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  • Nature Publishing Group (NPG)
  • Irkutsk : Ross. Akad. Nauk, Sibirskoe Otd., Inst. Zemnoj Kory
  • 2005-2009  (9)
  • 2007  (9)
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  • 2005-2009  (9)
Year
  • 1
    Publication Date: 2007
    Description: Electrical microstimulation can establish causal links between the activity of groups of neurons and perceptual and cognitive functions. However, the number and identities of neurons microstimulated, as well as the number of action potentials evoked, are difficult to ascertain. To address these issues we introduced the light-gated algal channel channelrhodopsin-2 (ChR2) specifically into a small fraction of layer 2/3 neurons of the mouse primary somatosensory cortex. ChR2 photostimulation in vivo reliably generated stimulus-locked action potentials at frequencies up to 50 Hz. Here we show that naive mice readily learned to detect brief trains of action potentials (five light pulses, 1 ms, 20 Hz). After training, mice could detect a photostimulus firing a single action potential in approximately 300 neurons. Even fewer neurons (approximately 60) were required for longer stimuli (five action potentials, 250 ms). Our results show that perceptual decisions and learning can be driven by extremely brief epochs of cortical activity in a sparse subset of supragranular cortical pyramidal neurons.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3425380/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3425380/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Huber, Daniel -- Petreanu, Leopoldo -- Ghitani, Nima -- Ranade, Sachin -- Hromadka, Tomas -- Mainen, Zach -- Svoboda, Karel -- Howard Hughes Medical Institute/ -- England -- Nature. 2008 Jan 3;451(7174):61-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia 20147, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18094685" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials/physiology/radiation effects ; Algal Proteins/genetics/metabolism ; Animals ; Behavior, Animal/*physiology/*radiation effects ; Cerebral Cortex/cytology/*physiology/*radiation effects ; Electric Stimulation ; Learning/*physiology/radiation effects ; Mice ; Movement/*physiology ; Optics and Photonics ; Photic Stimulation ; Pyramidal Cells/metabolism/radiation effects ; Rhodopsins, Microbial/genetics/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2007
    Description: Biodegradation of crude oil in subsurface petroleum reservoirs has adversely affected the majority of the world's oil, making recovery and refining of that oil more costly. The prevalent occurrence of biodegradation in shallow subsurface petroleum reservoirs has been attributed to aerobic bacterial hydrocarbon degradation stimulated by surface recharge of oxygen-bearing meteoric waters. This hypothesis is empirically supported by the likelihood of encountering biodegraded oils at higher levels of degradation in reservoirs near the surface. More recent findings, however, suggest that anaerobic degradation processes dominate subsurface sedimentary environments, despite slow reaction kinetics and uncertainty as to the actual degradation pathways occurring in oil reservoirs. Here we use laboratory experiments in microcosms monitoring the hydrocarbon composition of degraded oils and generated gases, together with the carbon isotopic compositions of gas and oil samples taken at wellheads and a Rayleigh isotope fractionation box model, to elucidate the probable mechanisms of hydrocarbon degradation in reservoirs. We find that crude-oil hydrocarbon degradation under methanogenic conditions in the laboratory mimics the characteristic sequential removal of compound classes seen in reservoir-degraded petroleum. The initial preferential removal of n-alkanes generates close to stoichiometric amounts of methane, principally by hydrogenotrophic methanogenesis. Our data imply a common methanogenic biodegradation mechanism in subsurface degraded oil reservoirs, resulting in consistent patterns of hydrocarbon alteration, and the common association of dry gas with severely degraded oils observed worldwide. Energy recovery from oilfields in the form of methane, based on accelerating natural methanogenic biodegradation, may offer a route to economic production of difficult-to-recover energy from oilfields.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jones, D M -- Head, I M -- Gray, N D -- Adams, J J -- Rowan, A K -- Aitken, C M -- Bennett, B -- Huang, H -- Brown, A -- Bowler, B F J -- Oldenburg, T -- Erdmann, M -- Larter, S R -- England -- Nature. 2008 Jan 10;451(7175):176-80. Epub 2007 Dec 12.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Civil Engineering and Geosciences, University of Newcastle, Newcastle upon Tyne, NE1 7RU, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18075503" target="_blank"〉PubMed〈/a〉
    Keywords: Alkanes/chemistry/metabolism ; Anaerobiosis ; Archaea/genetics/metabolism ; Bacteria/genetics/metabolism ; Biodegradation, Environmental ; Canada ; Carbon Dioxide/chemistry/metabolism ; Carbon Isotopes/analysis ; Gases/analysis/chemistry/metabolism ; Methane/*biosynthesis/chemistry ; Petroleum/*metabolism
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2007
    Description: Mating in many species induces a dramatic switch in female reproductive behaviour. In most insects, this switch is triggered by factors present in the male's seminal fluid. How these factors exert such profound effects in females is unknown. Here we identify a receptor for the Drosophila melanogaster sex peptide (SP, also known as Acp70A), the primary trigger of post-mating responses in this species. Females that lack the sex peptide receptor (SPR, also known as CG16752), either entirely or only in the nervous system, fail to respond to SP and continue to show virgin behaviours even after mating. SPR is expressed in the female's reproductive tract and central nervous system. The behavioural functions of SPR map to the subset of neurons that also express the fruitless gene, a key determinant of sex-specific reproductive behaviour. SPR is highly conserved across insects, opening up the prospect of new strategies to control the reproductive and host-seeking behaviours of agricultural pests and human disease vectors.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yapici, Nilay -- Kim, Young-Joon -- Ribeiro, Carlos -- Dickson, Barry J -- England -- Nature. 2008 Jan 3;451(7174):33-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Research Institute of Molecular Pathology (IMP), Dr. Bohr-Gasse 7, A-1030 Vienna, Austria.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18066048" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Central Nervous System/metabolism ; Conserved Sequence ; Copulation/physiology ; Drosophila Proteins/chemistry/deficiency/genetics/*metabolism ; Drosophila melanogaster/cytology/*physiology ; Female ; Genitalia, Female/metabolism ; Male ; Nerve Tissue Proteins/metabolism ; Neurons/metabolism ; Peptides/chemistry/deficiency/genetics/*metabolism ; Sexual Behavior, Animal/*physiology ; Substrate Specificity ; Transcription Factors/metabolism
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  • 4
    Publication Date: 2007
    Description: Transposable elements and their remnants constitute a substantial fraction of eukaryotic genomes. Host genomes have evolved defence mechanisms, including chromatin modifications and RNA interference, to regulate transposable elements. Here we describe a genome surveillance mechanism for retrotransposons by transposase-derived centromeric protein CENP-B homologues of the fission yeast Schizosaccharomyces pombe. CENP-B homologues of S. pombe localize at and recruit histone deacetylases to silence Tf2 retrotransposons. CENP-Bs also repress solo long terminal repeats (LTRs) and LTR-associated genes. Tf2 elements are clustered into 'Tf' bodies, the organization of which depends on CENP-Bs that display discrete nuclear structures. Furthermore, CENP-Bs prevent an 'extinct' Tf1 retrotransposon from re-entering the host genome by blocking its recombination with extant Tf2, and silence and immobilize a Tf1 integrant that becomes sequestered into Tf bodies. Our results reveal a probable ancient retrotransposon surveillance pathway important for host genome integrity, and highlight potential conflicts between DNA transposons and retrotransposons, major transposable elements believed to have greatly moulded the evolution of genomes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cam, Hugh P -- Noma, Ken-ichi -- Ebina, Hirotaka -- Levin, Henry L -- Grewal, Shiv I S -- Intramural NIH HHS/ -- England -- Nature. 2008 Jan 24;451(7177):431-6. Epub 2007 Dec 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory of Biochemistry and Molecular Biology, National Cancer Institute, Bethesda, Maryland 20892, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18094683" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Cycle Proteins/metabolism ; Centromere Protein B/genetics/metabolism ; DNA Transposable Elements/*genetics ; DNA-Binding Proteins/genetics ; Evolution, Molecular ; Gene Expression Regulation, Fungal ; Gene Silencing ; Genes, Fungal/genetics ; Genes, Mating Type, Fungal/genetics ; Genome, Fungal/*genetics ; Genomic Instability/*genetics ; Heterochromatin/genetics/metabolism ; Histone Deacetylases/metabolism ; Oxidative Stress ; Protein Transport ; Retroelements/*genetics ; Schizosaccharomyces/enzymology/*genetics/*metabolism ; Schizosaccharomyces pombe Proteins/genetics/*metabolism ; Terminal Repeat Sequences/genetics
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2007
    Description: Genome-wide DNA rearrangements occur in many eukaryotes but are most exaggerated in ciliates, making them ideal model systems for epigenetic phenomena. During development of the somatic macronucleus, Oxytricha trifallax destroys 95% of its germ line, severely fragmenting its chromosomes, and then unscrambles hundreds of thousands of remaining fragments by permutation or inversion. Here we demonstrate that DNA or RNA templates can orchestrate these genome rearrangements in Oxytricha, supporting an epigenetic model for sequence-dependent comparison between germline and somatic genomes. A complete RNA cache of the maternal somatic genome may be available at a specific stage during development to provide a template for correct and precise DNA rearrangement. We show the existence of maternal RNA templates that could guide DNA assembly, and that disruption of specific RNA molecules disables rearrangement of the corresponding gene. Injection of artificial templates reprogrammes the DNA rearrangement pathway, suggesting that RNA molecules guide genome rearrangement.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2647009/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2647009/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nowacki, Mariusz -- Vijayan, Vikram -- Zhou, Yi -- Schotanus, Klaas -- Doak, Thomas G -- Landweber, Laura F -- R01 GM059708/GM/NIGMS NIH HHS/ -- R01 GM059708-05A1/GM/NIGMS NIH HHS/ -- R01 GM059708-06/GM/NIGMS NIH HHS/ -- R01 GM059708-06S1/GM/NIGMS NIH HHS/ -- R01 GM059708-07/GM/NIGMS NIH HHS/ -- R01 GM059708-08/GM/NIGMS NIH HHS/ -- England -- Nature. 2008 Jan 10;451(7175):153-8. Epub 2007 Nov 28.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology and Evolutionary Biology, Princeton University, Princeton, New Jersey 08544, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18046331" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antisense Elements (Genetics)/genetics ; DNA, Protozoan/genetics/metabolism ; *Epistasis, Genetic ; Gene Expression Regulation, Developmental/genetics ; Gene Rearrangement/*genetics ; Genome, Protozoan/*genetics ; Macronucleus/*genetics ; Microinjections ; Molecular Sequence Data ; Nucleotides/genetics/metabolism ; Oxytricha/cytology/*genetics/growth & development ; RNA Interference ; RNA, Protozoan/*genetics/metabolism ; Templates, Genetic
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  • 6
    Publication Date: 2007
    Description: An unambiguous determination of the three-dimensional structure of nanoparticles is challenging. Electron tomography requires a series of images taken for many different specimen orientations. This approach is ideal for stable and stationary structures. But ultrasmall nanoparticles are intrinsically structurally unstable and may interact with the incident electron beam, constraining the electron beam density that can be used and the duration of the observation. Here we use aberration-corrected scanning transmission electron microscopy, coupled with simple imaging simulation, to determine with atomic resolution the size, three-dimensional shape, orientation and atomic arrangement of size-selected gold nanoclusters that are preformed in the gas phase and soft-landed on an amorphous carbon substrate. The structures of gold nanoclusters containing 3096 atoms can be identified with either Ino-decahedral, cuboctahedral or icosahedral geometries. Comparison with theoretical modelling of the system suggests that the structures are consistent with energetic considerations. The discovery that nanoscale gold particles function as active and selective catalysts for a variety of important chemical reactions has provoked much research interest in recent years. We believe that the detailed structure information we provide will help to unravel the role of these nanoclusters in size- and structure-specific catalytic reactions. We note that the technique will be of use in investigations of other supported ultrasmall metal cluster systems.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Li, Z Y -- Young, N P -- Di Vece, M -- Palomba, S -- Palmer, R E -- Bleloch, A L -- Curley, B C -- Johnston, R L -- Jiang, J -- Yuan, J -- England -- Nature. 2008 Jan 3;451(7174):46-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Nanoscale Physics Research Laboratory, School of Physics and Astronomy, University of Birmingham, Birmingham B15 2TT, UK. ziyouli@nprl.ph.bham.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18066049" target="_blank"〉PubMed〈/a〉
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  • 7
    Publication Date: 2007
    Description: Pluripotency pertains to the cells of early embryos that can generate all of the tissues in the organism. Embryonic stem cells are embryo-derived cell lines that retain pluripotency and represent invaluable tools for research into the mechanisms of tissue formation. Recently, murine fibroblasts have been reprogrammed directly to pluripotency by ectopic expression of four transcription factors (Oct4, Sox2, Klf4 and Myc) to yield induced pluripotent stem (iPS) cells. Using these same factors, we have derived iPS cells from fetal, neonatal and adult human primary cells, including dermal fibroblasts isolated from a skin biopsy of a healthy research subject. Human iPS cells resemble embryonic stem cells in morphology and gene expression and in the capacity to form teratomas in immune-deficient mice. These data demonstrate that defined factors can reprogramme human cells to pluripotency, and establish a method whereby patient-specific cells might be established in culture.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Park, In-Hyun -- Zhao, Rui -- West, Jason A -- Yabuuchi, Akiko -- Huo, Hongguang -- Ince, Tan A -- Lerou, Paul H -- Lensch, M William -- Daley, George Q -- England -- Nature. 2008 Jan 10;451(7175):141-6. Epub 2007 Dec 23.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Pediatric Hematology/Oncology, Children's Hospital Boston and Dana Farber Cancer Institute, Boston, Massachusetts 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18157115" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Animals ; Cell Differentiation ; Cell Shape ; Cells, Cultured ; DNA Methylation ; DNA-Binding Proteins/genetics ; Embryonic Stem Cells/cytology/metabolism ; Fetus/cytology ; Fibroblasts/cytology ; Gene Expression Profiling ; HMGB Proteins/genetics/*metabolism ; Homeodomain Proteins/genetics ; Humans ; Infant, Newborn ; Kruppel-Like Transcription Factors/genetics/*metabolism ; Mice ; Octamer Transcription Factor-3/genetics/*metabolism ; Pluripotent Stem Cells/*cytology/*metabolism/transplantation ; Promoter Regions, Genetic/genetics ; Proto-Oncogene Proteins c-myc/genetics/*metabolism ; SOXB1 Transcription Factors ; Teratoma/pathology ; Transcription Factors/genetics/*metabolism ; Transplantation, Heterologous
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  • 8
    Publication Date: 2007
    Description: Understanding how neural activity in sensory cortices relates to perception is a central theme of neuroscience. Action potentials of sensory cortical neurons can be strongly correlated to properties of sensory stimuli and reflect the subjective judgements of an individual about stimuli. Microstimulation experiments have established a direct link from sensory activity to behaviour, suggesting that small neuronal populations can influence sensory decisions. However, microstimulation does not allow identification and quantification of the stimulated cellular elements. The sensory impact of individual cortical neurons therefore remains unknown. Here we show that stimulation of single neurons in somatosensory cortex affects behavioural responses in a detection task. We trained rats to respond to microstimulation of barrel cortex at low current intensities. We then initiated short trains of action potentials in single neurons by juxtacellular stimulation. Animals responded significantly more often in single-cell stimulation trials than in catch trials without stimulation. Stimulation effects varied greatly between cells, and on average in 5% of trials a response was induced. Whereas stimulation of putative excitatory neurons led to weak biases towards responding, stimulation of putative inhibitory neurons led to more variable and stronger sensory effects. Reaction times for single-cell stimulation were long and variable. Our results demonstrate that single neuron activity can cause a change in the animal's detection behaviour, suggesting a much sparser cortical code for sensations than previously anticipated.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Houweling, Arthur R -- Brecht, Michael -- England -- Nature. 2008 Jan 3;451(7174):65-8. Epub 2007 Dec 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Bernstein Center for Computational Neuroscience and Humboldt University Berlin, Philippstrasse 13, House 6, 10115 Berlin, Germany. arthur.houweling@bccn-berlin.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18094684" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Animals ; Behavior, Animal/*physiology ; Electric Stimulation ; Neurons/*physiology ; Pyramidal Cells/metabolism ; Rats ; Reaction Time ; Somatosensory Cortex/*cytology/*physiology ; Touch/physiology
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  • 9
    Map available for loan
    Map available for loan
    Irkutsk : Ross. Akad. Nauk, Sibirskoe Otd., Inst. Zemnoj Kory
    Call number: K 08.0362 / Fach 29
    Type of Medium: Map available for loan
    Pages: 1 Kt. : mehrfarb. 77 x 69 cm, gefaltet 21 x 30 cm
    Language: Russian
    Location: Upper compact magazine
    Branch Library: GFZ Library
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