ALBERT

Description: Leg 6 of CHAIN Cruise 115 began in Rio de Janeiro on 22 April 1974, and terminated in Recife on 18 May 1974. A multi-disciplinary scientific program was carried out within the Vema Channel and on the northern flanks of the Rio Grande Rise (see Figure 1). Personnel and scientific programs representing several institutions (W.H.O.I., Scripps, Lamont-Doherty) were included in the project; Brazilian observers representing PETROBRAS and the National Research Council also participated in the program.

Description: Prepared for the National Science Foundation under Grant GA-41186. Financial support for shipboard operations and most of the scientific programs during Leg 6 of CHAIN Cruise 115 was provided under National Science Foundation grant GA-41185. Seismic profiling and bathymetry were supported under O.N.R. Contract N00014-66-C-0241. Bottom current measurements received support under N.S.F. Grant No. GA-41285 to W. Patzert and to J.L. Reid (Scripps). Support for the Lamont-Doherty nephelometer program was provided under O.N.R. Contract N00014-67-A-0108-0004 and N.S.F. Grant GA-27281. Supplementary equipment items required for the transponder navigation system were provided by the Woods Hole Ocean Industry Program.

Description: Of all the socio-economic changes caused by the Covid-19 pandemic, the disruption to workforce organizations will probably leave the largest indelible mark. The way work will be organized in the future will be closely linked to the experience of work-ing under the same institution’s response to the pandemic. This paper aims to fill the gap in knowledge about smart working (SW) in public organizations, with a focus on the experience of the employees of two Italian research organizations, CNR and INGV. Analysing primary data, it explored and assessed how SW had been experi-enced following the implementation of governmental measures aimed at limiting the spread of COVID-19

Description: Published

Description: 815–833

Description: 2TM. Divulgazione Scientifica

Description: JCR Journal

Description: Data visualization, and to a lesser extent data sonification, are classic tools to the scientific community. However, these two approaches are very rarely combined, although they are highly complementary: our visual system is good at recognizing spatial patterns, whereas our auditory system is better tuned for temporal patterns. In this article, data representation methods are proposed that combine visualization, sonification, and spatial audio techniques, in order to optimize the user’s perception of spatial and temporal patterns in a single display, to increase the feeling of immersion, and to take advantage of multimodal integration mechanisms. Three seismic data sets are used to illustrate the methods, covering different physical phenomena, time scales, spatial distributions, and spatio-temporal dynamics. The methods are adapted to the specificities of each data set, and to the amount of information that the designer wants to display. This leads to further developments, namely the use of audification with two time scales, the switch from pure audification to time-modulated noise, and the switch from pure audification to sonic icons. First user feedback from live demonstrations indicates that the methods presented in this article seem to enhance the perception of spatio-temporal patterns, which is a key parameter to the understanding of seismically active systems, and a step towards apprehending the processes that drive this activity.

Description: Published

Description: 125–142

Description: 7T. Variazioni delle caratteristiche crostali e "precursori"

Description: JCR Journal

Description: Short-term earthquake clustering properties in the Eastern Aegean Sea (Greece) area investigated through the application of an epidemic type stochastic model (Epidemic Type Earthquake Sequence; ETES). The computations are performed in an earthquake catalog covering the period 2008 to 2020 and including 2332 events with a completeness threshold of Mc = 3.1 and separated into two subcatalogs. The first subcatalog is employed for the learning period, which is between 2008/01/01 and 2016/12/31 (N = 1197 earthquakes), and used for the model’s parameters estimation. The second subcatalog from 2017/01/01 to 2020/11/10 (1135 earthquakes), in which the sequences of 2017 Mw = 6.4 Lesvos, 2017 Mw = 6.6 Kos and 2020 Mw = 7.0 Samos main shocks are included, and used for a retrospective forecast testing based on the constructed model. The estimated model parameters imply a swarm like behavior, indicating the ability of earthquakes of small to moderate magnitude above Mc to produce their own offsprings, along with the stronger earthquakes. The retrospective evaluation of the model is examined in the three aftershock sequences, where lack of foreshocks resulted in low predictability of the mainshocks, with estimated daily probabilities around 10– 5. Immediately after the mainshocks occurrence the model adjusts with notable resemblance between the expected and observed aftershock rates, particularly for earthquakes with M ≥ 3.5.

Description: Published

Description: 1085–1099

Description: 6T. Studi di pericolosità sismica e da maremoto

Description: JCR Journal

Description: This work presents an up-to-date model for the simulation of non-stationary ground motions, including several novelties compared to the original study of Sabetta and Pugliese (Bull Seism Soc Am 86:337–352, 1996). The selection of the input motion in the framework of earthquake engineering has become progressively more important with the growing use of nonlinear dynamic analyses. Regardless of the increasing availability of large strong motion databases, ground motion records are not always available for a given earthquake scenario and site condition, requiring the adoption of simulated time series. Among the different techniques for the generation of ground motion records, we focused on the methods based on stochastic simulations, considering the time- frequency decomposition of the seismic ground motion. We updated the non-stationary stochastic model initially developed in Sabetta and Pugliese (Bull Seism Soc Am 86:337–352, 1996) and later modified by Pousse et al. (Bull Seism Soc Am 96:2103–2117, 2006) and Laurendeau et al. (Nonstationary stochastic simulation of strong ground-motion time histories: application to the Japanese database. 15 WCEE Lisbon, 2012). The model is based on the S-transform that implicitly considers both the amplitude and frequency modulation. The four model parameters required for the simulation are: Arias intensity, significant duration, central frequency, and frequency bandwidth. They were obtained from an empirical ground motion model calibrated using the accelerometric records included in the updated Italian strong-motion database ITACA. The simulated accelerograms show a good match with the ground motion model prediction of several amplitude and frequency measures, such as Arias intensity, peak acceleration, peak velocity, Fourier spectra, and response spectra.

Description: Published

Description: 3287–3315

Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica

Description: JCR Journal

Description: Probabilistic earthquake locations provide confidence intervals for the hypocentre solutions such as errors encountered in the position, the origin time, and in magnitude. If the relationship of the parameters relative to the local arrangement of the seismic network is considered, such as the node distance, the number of stations, the seismic gap, and the quality of phase readings), the uncertainties can then provide insights on the location capability of the network. In this paper, we collect the earthquake data recorded from the Italian Seismic Network for a time span of 5 years. The data pertain to three different catalogues according to the progressive refinement phases of the location procedure: automatic location, revised location, and published location. By means of spatial analysis,we assess the distribution of the location-related and network-related estimators across the study area. These estimators are subsequently combined to assess the existence of spatial correlations at a local scale. The results indicate that the Italian network is generally able to provide robust locations at the national scale and for smaller earthquakes, and the elongated shape of Italy (and of its network) does not cause systematic bias in the locations. However, we highlight the existence of subregions in which the performance of the network is weaker. At present, a unique 2D, 3-layer velocity model is used for the earthquake location procedure, and this could represent the main limitation for the improvement of the locations. Therefore, the assessment of locally optimized velocity models is the priority for the homogenization and the improvement of the Italian Seismic Network performance.

Description: Published

Description: 1061–1076

Description: 1IT. Reti di monitoraggio e sorveglianza

Description: JCR Journal

Description: This paper provides a new contribution to the construction of the complex and fragmentary mosaic of the Late Holocene earthquakes history of the İznik segment of the central strand of the North Anatolian Fault (CNAF) in Turkey. The CNAF clearly displays lower dextral slip rates with respect to the northern strand however, surface rupturing and large damaging earthquakes (M 〉 7) occurred in the past, leaving clear signatures in the built and natural environments. The association of these historical events to specific earthquake sources (e.g., Gemlik, İznik, or Geyve fault segments) is still a matter of debate. We excavated two trenches across the İznik fault trace near Mustafali, a village about 10 km WSW of İznik where the morphological fault scarp was visible although modified by agricultural activities. Radiocarbon and TL dating on samples collected from the trenches show that the displaced deposits are very recent and span the past 2 millennia at most. Evidence for four surface faulting events was found in the Mustafali trenches. The integration of these results with historical data and previous paleoseismological data yields an updated Late Holocene history of surface-rupturing earthquakes along the İznik Fault in 1855, 740 (715), 362, and 121 CE. Evidence for the large M7 + historical earthquake dated 1419 CE generally attributed to this fault, was not found at any trench site along the İznik fault nor in the subaqueous record. This unfit between paleoseismological, stratigraphic, and historical data highlights one more time the urge for extensive paleoseismological trenching and offshore campaigns because of the high potential to solve the uncertainties on the seismogenic history (age, earthquake location, extent of the rupture and size) of this portion of NAFZ and especially on the attribution of historical earthquakes to the causative fault.

Description: Published

Description: 115–128

Description: 2T. Deformazione crostale attiva

Description: N/A or not JCR

Description: In this paper the site categorization criteria and the corresponding site amplification factors proposed in the 2021 draft of Part 1 of Eurocode 8 (2021-draft, CEN/TC250/SC8 Working Draft N1017) are first introduced and compared with the current version of Eurocode 8, as well as with site amplification factors from recent empirical ground motion prediction equations. Afterwards, these values are checked by two approaches. First, a wide dataset of strong motion records is built, where recording stations are classified according to 2021-draft, and the spectral amplifications are empirically estimated computing the site-to-site residuals from regional and global ground motion models for reference rock conditions. Second, a comprehensive parametric numerical study of one-dimensional (1D) site amplification is carried out, based on randomly generated shear-wave velocity profiles, classified according to the new criteria. A reasonably good agreement is found by both approaches. The most relevant discrepancies occur for the shallow soft soil conditions (soil category E) that, owing to the complex interaction of shear wave velocity, soil deposit thickness and frequency range of the excitation, show the largest scatter both in terms of records and of 1D numerical simulations. Furthermore, 1D numerical simulations for soft soil conditions tend to provide lower site amplification factors than 2021-draft, as well as lower than the corresponding site-to-site residuals from records, because of higher impact of non-linear (NL) site effects in the simulations. A site-specific study on NL effects at three KiK-net stations with a significantly large amount of high-intensity recorded ground motions gives support to the 2021-draft NL reduction factors, although the very limited number of recording stations allowing such analysis prevents deriving more general implications. In the presence of such controversial arguments, it is reasonable that a standard should adopt a prudent solution, with a limited reduction of the site amplification factors to account for NL soil response, while leaving the possibility to carry out site-specific estimations of such factors when sufficient information is available to model the ground strain dependency of local soil properties.

Description: Published

Description: 4199–4234

Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica

Description: JCR Journal

Description: ShakeMap is the tool to evaluate the ground motion effect of earthquakes in vast areas. It is useful to delimit the zones where the shaking is expected to have been most significant, for civil defense rapid response. From the earthquake engineering point of view, it can be used to infer the seismic actions on the built environment to calibrate vulnerability models or to define the reconstruction policies based on observed damage vs shaking. In the case of long-lasting seismic sequences, it can be useful to develop ShakeMap envelopes, that is, maps of the largest ground intensity among those from the ShakeMap of (selected) events of a seismic sequence, to delimit areas where the effects of the whole sequence have been of structural engineering relevance. This study introduces ShakeMap envelopes and discusses them for the central Italy 2016–2017 seismic sequence. The specific goals of the study are: (i) to compare the envelopes and the ShakeMap of the main events of the sequence to make the case for sequence-based maps; (ii) to quantify the exceedance of design seismic actions based on the envelopes; (iii) to make envelopes available for further studies and the reconstruction planning; (iv) to gather insights on the (repeated) exceedance of design seismic actions at some sites. Results, which include considerations of uncertainty in ShakeMap, show that the sequence caused exceedance of design hazard in thousands of square kilometers. The most relevant effects of the sequence are, as expected, due to the mainshock, yet seismic actions larger than those enforced by the code for structural design are found also around the epicenters of the smaller magnitude events. At some locations, the succession of ground-shaking that has excited structures, provides insights on structural damage accumulation that has likely taken place; something that is not accounted for explicitly in modern seismic design. The envelopes developed are available as supplemental material.

Description: Published

Description: 5391–5414

Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica

Description: JCR Journal

Description: Analyzing seismic data to get information about earthquakes has always been a major task for seismologists and, more in general, for geophysicists. Recently, thanks to the technological development of observation systems, more and more data are available to perform such tasks. However, this data “grow up” makes “human possibility” of data processing more complex in terms of required efforts and time demanding. That is why new technological approaches such as artificial intelligence are becoming very popular and more and more exploited. In this paper, we explore the possibility of interpreting seismic waveform segments by means of pre-trained deep learning. More specifically, we apply convolutional networks to seismological waveforms recorded at local or regional distances without any pre-elaboration or filtering. We show that such an approach can be very successful in determining if an earthquake is “included” in the seismic wave image and in estimating the distance between the earthquake epicenter and the recording station.

Description: Published

Description: 1347–1359

Description: 1T. Struttura della Terra

Description: 3T. Fisica dei terremoti e Sorgente Sismica

Description: JCR Journal

Description: Themain climatological features of the ionospheric equivalent slab thickness (τ ) for the Northern hemispheremidlatitudes are analyzed. F2-layer peak electron density values recorded at three midlatitude ionospheric stations (Chilton 51.5° N, 0.6° W, U.K.; Roquetes 40.8° N, 0.5° E, Spain;Wallops Island 37.9° N, 75.5°W, USA) and vertical total electron content values from colocated ground-based Global Navigation Satellite System receivers are used to calculate a dataset of τ values for the last two solar cycles, considering only magnetically quiet periods. Results are presented both as grids of binned medians and as boxplots as a function of local time and month of the year, for different solar activity levels. Corresponding trends are first compared to those output by the midlatitude empirical model developed by Fox et al. (Radio Sci 26:429–438, 1991) and then discussed in the light of what is known so far. From this investigation, the strong need to implement an improved empirical model of τ has emerged. Both Space Weather and Space Geodesy applications might benefit from such model. Therefore, both the dataset and the methodology described in the paper represent a first fundamental step aimed at implementing an empirical climatological model of the ionospheric equivalent slab thickness. The study highlighted also that at midlatitudes τ shows the following main patterns: daytime values considerably smaller than nighttime ones (except in summer); well-defined maxima at solar terminator hours; a greater dispersion during nighttime and solar terminator hours; no clear and evident solar activity dependence.

Description: Published

Description: 124

Description: 2A. Fisica dell'alta atmosfera

Description: JCR Journal

Description: The eruption of basaltic magmas dominates explosive volcanism on Earth and other planets within the Solar System. The mechanism through which continuous magma fragments into volcanic particles is central in governing eruption dynamics and the ensuing hazards. However, the mechanism of fragmentation of basaltic magmas is still disputed, with both viscous and brittle mechanisms having been proposed. Here we carry out textural analysis of the products of ten eruptions from seven volcanoes by scanning electron microscopy. We find broken crystals surrounded by intact glass that testify to the brittle fragmentation of basaltic magmas during explosive activity worldwide. We then replicated the natural textures of broken crystals in laboratory experiments where variably crystallized basaltic melt was fragmented by rapid deformation. The experiments reveal that crystals are broken by the propagation of a network of fractures through magma, and that afterwards the fractures heal by viscous flow of the melt. Fracturing and healing affect gas mobility, stress distribution, and bubble and crystal size distributions in magma. Our results challenge the idea that the grain size distribution of basaltic eruption products reflects the density of fractures that initially fragmented the magma and ultimately indicate that brittle fracturing and viscous healing of magma may underlie basaltic explosive eruptions globally.

Description: Published

Description: 248–254

Description: 4V. Processi pre-eruttivi

Description: 5V. Processi eruttivi e post-eruttivi

Description: JCR Journal

Description: This book serves as a guide to discovering the most interesting volcano sites in Italy. Accompanied by some extraordinary contemporary images of active Neapolitan volcanoes, it explains the main volcanic processes that have been shaping the landscape of the Campania region and influencing human settlements in this area since Greek and Roman times and that have prompted leading international scientists to visit and study this natural volcanology laboratory. While volcanology is the central topic, the book also addresses other aspects related to the area’s volcanism and is divided into three sections: 1) Neapolitan volcanic activity and processes (with a general introduction to volcanology and its development around Naples together with descriptions of the landscape and the main sites worth visiting); 2) Volcanoes and their interactions with local human settlements since the Bronze Age, recent population growth and the transformation of the territory; 3) The risks posed by Neapolitan Volcanoes, their recent activity and the problem of forecasting any future eruption.

Description: Published

Description: 2TM. Divulgazione Scientifica

Description: High-precision vertebral bomb radiocarbon measurements likely track philopatric movements in oceanic whitetip shark Carcharhinus longimanus.

Description: This work was made possible by a Graduate Student Fellowship from the National Ocean Sciences Accelerator Mass Spectrometry (NOSAMS) lab at Woods Hole Oceanographic Institution.

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Babbin, A. R., Tamasi, T., Dumit, D., Weber, L., Rodríguez, M. V. I., Schwartz, S. L., Armenteros, M., Wankel, S. D., & Apprill, A. Discovery and quantification of anaerobic nitrogen metabolisms among oxygenated tropical Cuban stony corals. ISME Journal, (2020), doi:10.1038/s41396-020-00845-2.

Description: Coral reef health depends on an intricate relationship among the coral animal, photosynthetic algae, and a complex microbial community. The holobiont can impact the nutrient balance of their hosts amid an otherwise oligotrophic environment, including by cycling physiologically important nitrogen compounds. Here we use 15N-tracer experiments to produce the first simultaneous measurements of ammonium oxidation, nitrate reduction, and nitrous oxide (N2O) production among five iconic species of reef-building corals (Acropora palmata, Diploria labyrinthiformis, Orbicella faveolata, Porites astreoides, and Porites porites) in the highly protected Jardines de la Reina reefs of Cuba. Nitrate reduction is present in most species, but ammonium oxidation is low potentially due to photoinhibition and assimilatory competition. Coral-associated rates of N2O production indicate a widespread potential for denitrification, especially among D. labyrinthiformis, at rates of ~1 nmol cm−2 d−1. In contrast, A. palmata displays minimal active nitrogen metabolism. Enhanced rates of nitrate reduction and N2O production are observed coincident with dark net respiration periods. Genomes of bacterial cultures isolated from multiple coral species confirm that microorganisms with the ability to respire nitrate anaerobically to either dinitrogen gas or ammonium exist within the holobiont. This confirmation of anaerobic nitrogen metabolisms by coral-associated microorganisms sheds new light on coral and reef productivity.

Description: Research was conducted in the Gardens of the Queen, Cuba in accordance with the requirements of the Republic of Cuba, conducted under permit NV2370 and NV2568 issued by the Ministerio de Relaciones Exteriores. We gratefully acknowledge funding for this research by MIT Sea Grant award #2018-DOH-49-LEV, Simons Foundation award #622065, and MIT ESI seed funding to ARB, the MIT Montrym, Ferry, and mTerra Seed Grant Funds, and the generous contributions by Dr Bruce L. Heflinger.

Description: The Northwest Tropical Atlantic Station (NTAS) was established to address the need for accurate air-sea flux estimates and upper ocean measurements in a region with strong sea surface temperature anomalies and the likelihood of significant local air–sea interaction on interannual to decadal timescales. The approach is to maintain a surface mooring outfitted for meteorological and oceanographic measurements at a site near 15°N, 51°W by successive mooring turnarounds. These observations are used to investigate air–sea interaction processes related to climate variability. The NTAS Ocean Reference Station (ORS NTAS) is supported by the National Oceanic and Atmospheric Administration’s (NOAA) Global Ocean Monitoring and Observing (GOMO) Program (formerly Ocean Observing and Monitoring Division). This report documents recovery of the NTAS-17 mooring and deployment of the NTAS-18 mooring at the same site. Both moorings used Surlyn foam buoys as the surface element. These buoys were outfitted with two Air–Sea Interaction Meteorology (ASIMET) systems. Each system measures, records, and transmits via satellite the surface meteorological variables necessary to compute air–sea fluxes of heat, moisture and momentum. The upper 160 m of the mooring line were outfitted with oceanographic sensors for the measurement of temperature, salinity and velocity. The mooring turnaround was done by the Upper Ocean Processes Group of the Woods Hole Oceanographic Institution (WHOI), onboard R/V Ron Brown, Cruise RB-20-01. The cruise took place between January 6 and 26 2020. The NTAS-18 mooring was deployed on January 10, and the NTAS-17 mooring was recovered on January 15. Inter-comparison between ship and buoys were performed on this cruise. This report describes these operations, as well as other work done on the cruise and some of the pre-cruise buoy preparations. Other operations during RB-20-01 consisted in the acoustic communications with the Meridional Overturning Variability Experiment (MOVE) subsurface mooring array MOVE 1-13 and acoustic downloads of data from Pressure Inverted Echo Sounders (PIES) was also conducted at MOVE 1. MOVE is designed to monitor the integrated deep meridional flow in the tropical North Atlantic. Two ARGO floats were also deployed on behalf of the WHOI ARGO group. During the cruise, atmospheric measurements of aerosols, as well as radar, Lidar, radiosondes were made as part of the ATOMIC campaign. 3

Description: Funding was provided by the National Oceanic and Atmospheric Administration under Grant No. NA14OAR4320158

Description: R/V Knorr Voyage 134-15, Naples to Cagliari August 11, 1988 - August 18, 1988, science navigation log, part 1

Description: R/V Knorr Voyage 134-15 Naples to Cagliari 11 August to 18 August 1988 Science Navigation Log, Part 2

Description: The following lists actual and relative positions for 2 critical pieces in the AMPHORA Site - the WRECK and the BROKEN AMPHORA. First some comments. All LAT/LON positional data are referenced to GPS. The actual positions froM the STARELLA 88 data are reliable. The actual position (only located the broken AMPHORA on that trip) from the KNORR 88 data is not reliable for reasons which are detailed in a separate note to Tom Crook. In which case, the relative positions are important. From the relative positions of the 2 wreck locations, one can safely say that there is only one wreck in that area. The broken AMPHORA is the only tie between the two coordinate systems. This is assuming that there is only one, unique broken amphora. Uchupi believes this is the case. However, the possibility that there is more than one has not been completely ruled out. Considering the proximity of the wreck to the broken amphora based on the STARELLA 88 data, it seems implausible that you would have Missed the wreck completely once you found the broken amphora. This is what preserves the possibility of more than one, at least for the Moment. More careful and detailed examination of the KNORR 88 data tracks should indicate if you indeed went through an area located relative to the broken amphora where the wreck should have been. I haven't had time to examine the data myself yet.

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Seyler, L. M., Trembath-Reichert, E., Tully, B. J., & Huber, J. A. Time-series transcriptomics from cold, oxic subseafloor crustal fluids reveals a motile, mixotrophic microbial community. Isme Journal, (2020), doi:10.1038/s41396-020-00843-4.

Description: The oceanic crustal aquifer is one of the largest habitable volumes on Earth, and it harbors a reservoir of microbial life that influences global-scale biogeochemical cycles. Here, we use time series metagenomic and metatranscriptomic data from a low-temperature, ridge flank environment representative of the majority of global hydrothermal fluid circulation in the ocean to reconstruct microbial metabolic potential, transcript abundance, and community dynamics. We also present metagenome-assembled genomes from recently collected fluids that are furthest removed from drilling disturbances. Our results suggest that the microbial community in the North Pond aquifer plays an important role in the oxidation of organic carbon within the crust. This community is motile and metabolically flexible, with the ability to use both autotrophic and organotrophic pathways, as well as function under low oxygen conditions by using alternative electron acceptors such as nitrate and thiosulfate. Anaerobic processes are most abundant in subseafloor horizons deepest in the aquifer, furthest from connectivity with the deep ocean, and there was little overlap in the active microbial populations between sampling horizons. This work highlights the heterogeneity of microbial life in the subseafloor aquifer and provides new insights into biogeochemical cycling in ocean crust.

Description: The Gordon and Betty Moore Foundation sponsored most of the observatory components at North Pond through grant GBMF1609. This work was supported by NSF OCE-1062006, OCE-1745589 and OCE-1635208 to J.A.H. E.T.R. was supported by a NASA Postdoctoral Fellowship with the NASA Astrobiology Institute and a L’Oréal USA For Women in Science Fellowship. The Center for Dark Energy Biosphere Investigations (C-DEBI OCE-0939564) also supported the participation of J.A.H. and B.T. This is C-DEBI contribution number 548.

Description: Equations 1-4 summarize the rotor calibration used at Woods Hole Oceanographic Institution for the VACM. A discussion of the instrumental and test details used to derive these equations follows. A list of other VACM documents and related bibliography is included.

Description: Prepared for the Office of Naval Research under Contract N00014-66-C0241; NR 083-004; N00014- 74-C0262; NR 083-004; and IDOE/NSF Grant GX-29054.

Description: The 2017 Geophysical Fluid Dynamics Summer Study Program theme was Ice-Ocean Interactions. Three principal lecturers, Andrew Fowler (Oxford), Adrian Jenkins (British Antarctic Survey) and Fiamma Straneo (WHOI/Scripps Institution of Oceanography) were our expert guides for the first two weeks. Their captivating lectures covered topics ranging from the theoretical underpinnings of ice-sheet dynamics, to models and observations of ice-ocean interactions and high-latitude ocean circulation, to the role of the cryosphere in climate change. These icy topics did not end after the first two weeks. Several of the Fellows' projects related to ice-ocean dynamics and thermodynamics, and many visitors gave talks on these themes.

Description: Funding was provided by the National Science Foundation under Grant No. OCE-1829864.

Description: The WHOI ASIT Tower station located approximately 2 miles southeast of Martha’s Vineyard. The met tower platform sits approximately 11m above the water line, depending on tide level. Site is accessed using a vessel provided by WHOI (Woods Hole Oceanographic Institution). Tower is maintained by WHOI and WHOI personnel are needed to access tower.

Description: This technical manual guides the user through the process of creating a data table for the submission of taxonomic and morphological information for plankton and other particles from images to a repository. Guidance is provided to produce documentation that should accompany the submission of plankton and other particle data to a repository, describes data collection and processing techniques, and outlines the creation of a data file. Field names include scientificName that represents the lowest level taxonomic classification (e.g., genus if not certain of species, family if not certain of genus) and scientificNameID, the unique identifier from a reference database such as the World Register of Marine Species or AlgaeBase. The data table described here includes the field names associatedMedia, scientificName/ scientificNameID for both automated and manual identification, biovolume, area_cross_section, length_representation and width_representation. Additional steps that instruct the user on how to format their data for a submission to the Ocean Biodiversity Information System (OBIS) are also included. Examples of documentation and data files are provided for the user to follow. The documentation requirements and data table format are approved by both NASA’s SeaWiFS Bio-optical Archive and Storage System (SeaBASS) and the National Science Foundation’s Biological and Chemical Oceanography Data Management Office (BCO-DMO).

Description: This report was an outcome of a working group supported by the Ocean Carbon and Biogeochemistry (OCB) project office, which is funded by the US National Science Foundation (OCE1558412) and the National Aeronautics and Space Administration (NNX17AB17G). AN, SB, and CP conceived and drafted the document. IC, IST, JF and HS contributed to the main body of the document as well as the example files. All members of the working group contributed to the content of the document, including the conceptualization of the data table and metadata format. We would also like thank the external reviewers Cecile Rousseaux (NASA GSFC), Susanne Menden-Deuer (URI) Frank Muller-Karger (USF), and Abigail Benson (USGS) for their valuable feedback.

Description: When filling out the publication agreement forms for a manuscript to be published what license should I choose? Studies continue to show favorable impact of Open Access on the scholarly literature through increased dissemination and re-use.

Description: Information is presented on the structural and functional properties of phosphates in "biochemical systems. Phosphates follow four structural formation principles: (1) linkage of phosphate units via oxygen co-ordinated metal ion polyhedra, (2) establishment of chains, (3) cross linkages of chains resulting in corrugated layers, and (4) cross linkages of layers resulting in distinct three-dimensional molecular networks. One Iinkage type does not require nor exclude another Iinkage type. On the basis of this concept on the associations of phosphate tetrahedra and metal ion oxygen polyhedra, a revised molecular model for DNA is proposed. Metal ion oxygen polyhedra excercise control on the shape of the DNA, and thus may introduce the stretching of the polymer chains This can be considered the ultimate reason why a single stranded DNA will associate itself readily with another single stranded DNA resulting in a double helix. In contrast, the coupling of a single stranded DNA by itself in making a sharp bend (loop) will not take place due to the stabilization of the structure by means of the metal ion oxygen polyhedra backbone. This model also explains thefunctional properties of the nucleic acids, for instance, the oxide chains and layers will favor proton jumps, and in the presence of a differential potential, they will form proton conduction bands. The molecular organization, as introduced by the association of metal ion coordination polyhedra with the PO4 groups, plays also a significant role in membrane dynamics. Analogous to the ion co-ordination interactions of polyphosphoric acids, the fixation of metal ions at the P-O surface and of membranes will result in a distinct molecular geometry as a whole. In this way, the membranes will act as dynamic molecular sieves, whereby the mesh size and the functional characteristics of these molecular sieves is determined by the flexible interplay of metals and the individual phospholipid compounds contained in the membranes. TP (111-P) is characterized for its ability to form a co-ordination polyhedron with polyvalent cations. In this way it resembles polyphosphates and differs from 1-P and 11-P. Triphosphate exhibits two significant properties: (1) terminal chain degradation, i.e. the release of terminal PO4 groups and formation of PO3 radicals which is controlled by external electrical forces,and (2) affinity to all cations by means of metal ion oxygen polyhedra and the establishment of an exchange affinity series for all metal ions. Concerning the biosynthesis of polysaccharides, proteins, and the nucleic acids, three conditions have to be fulfilled;. (1) acitvation of the react ion partner, (2) maximum efficiency and minimum error, and (3) well-defined control of the reactions in terms of kinetics and transportation mechanism. All three requirements are most effectively executed by triphosphates. The controlled formation of the reactive P03 radicaI not only activates the reaction partner, but also eliminates by means of the phosphate formation, the OH and O groups from the reaction system and this with extraordinary efficiency and elegance. In biochemical reactions, this role is commonly exercised by ATP.

Description: Submitted to the National Aeronautics and Space Administration under Contract NSR-22-014-001. and to the American Chemical Society under Contract PRF 1943-A2.

Description: The objectives of R/V Neil Armstrong cruise AR35-04 (Fig. 1) were to survey the flanks of the Reykjanes Ridge and determine the timing, geometry and associated geophysical characteristics of the large-scale tectonic reorganizations that occurred there in the Paleogene and continue to the present (Fig. 2). The North Atlantic plate boundary between what is today the Bight Fracture Zone and Iceland, a distance of nearly 1000 km, was originally a linear orthogonally-spreading ridge that became abruptly fragmented in a stair-step fashion following a change in plate motion [Smallwood and White, 2002]. Its subsequent evolution involved the systematic and progressive removal of offsets from north to south to re-establish its original linear configuration [Hey et al., 2016; Martinez and Hey, 2017], even though this required the ridge to then spread obliquely, since the new spreading direction remained stable. These tectonic reorganizations took place within the region of influence of the Iceland “hotspot” which creates a strong gradient in mantle melting along the ridge, increasing crustal thicknesses by ~3-4 km and decreasing ridge axis depths by ~ 3000 m between the Bight Fracture Zone and Iceland [Louden et al., 2004]. A mantle gradient in melting properties (compositional and/or thermal) is presumably what results in the regional residual basement depth anomaly that extends throughout this region of the North Atlantic from the Greenland-Iceland-Faroe Ridge to south of the Bight Fracture Zone. This gradient in mantle properties with distance from the Iceland hotspot apparently had strong modulating effects on the tectonic reorganizations: the initial segment lengths and offsets appear in regional magnetic anomaly and satellite-derived gravity maps to be smaller toward Iceland and the segments evolved to re-establish the linear ridge configuration more quickly to the north [Hey et al., 2016]. As both kinematic and “hotspot” effects influence their development, the Reykjanes ridge flanks are key areas for investigating lithospheric and mantle controls on ridge segmentation, formation and elimination of transform faults and the mechanisms controlling their evolution.

Description: This work was funded by NSF grant OCE-1756760. The Marine Advanced Technology and Education program supported the participation of the MATE interns. An InterRidge Cruise Bursary supported the participation of Dr. Dominik Palgan.

Description: Following an order of Massachusetts Clean Energy Center a calibration of a LiDAR of the type WindCube V2 by Leosphere (WLS7-436) against a met mast has been performed at a test site in the US. In this report the measurement results of the LiDAR device are compared to those from calibrated cup anemometers mounted on a met mast. The aim of this comparative assessment is to convey traceability to international standards of this particular LiDAR unit. The evaluation process is based on the IEC 61400-12-1 Ed. 2 Annex L [2]. This standard describes the calibration procedure of remote sensing devices in the frame of power curve measurements on wind turbines. However, this approach generally also applies in the field of wind resource assessment, under the recommendations of MEASNET [4]. The data of the LiDAR measurement (130 m, 125 m, 95 m and 60 m) have been compared with the measured met mast data at 4 different heights (130 m, 125 m, 94 m and 58 m) during a period of 36 days (2019.08.20 – 2019.09.25) for wind speed bins between 4 – 16 m/s and for the wind direction sector 67 – 354°. In addition, measurement results of the met mast and LiDAR unit have been compared in terms of turbulence intensity, wind direction and wind shear. UL was not involved in the installation of the instruments on the mast but has gathered all relevant information. However, UL was responsible for the installation of the LiDAR unit close to the mast. It is ensured that the results presented in this report have been measured in an unbiased manner, following the best practices and to the best knowledge of the participating persons.

Description: Performance Verification Certificate for Renewable NRG Systems reference Lidar: WLS7-94 on July 2020.

Description: AWS Truepower (AWST) has been engaged by the Massachusetts Clean Energy Center (MassCEC) to develop monitoring campaign guidance in support of MassCEC’s “Metocean Initiative”. The goal of the Initiative is to “advance planning and permitting and reduce the costs of offshore wind energy in the Bureau of Ocean Energy Management’s (BOEM) designated Massachusetts Wind Energy Area (MAWEA) and the Rhode Island/Massachusetts (RI/MA) Wind Energy Area (together, the ‘WEAs’).”[1] The data collected and developed during this campaign are planned to support characterization of the WEAs’ long-term wind resource and metocean design conditions. The body of this report presents a recommended monitoring campaign framework.. The content of this document is based upon the information presented in the MassCEC Metocean Data Needs Assessment report [1], the MassCEC Metocean Initiative RFP [2], and subsequent discussions with the campaign team. The metocean campaign described here is expected to form the cornerstone of new observed public data sets developed specifically to support regional offshore wind energy development.

Description: Lidar is deployed on the Air Sea Interaction Tower (ASIT) offshore structure owned and operated by Woods Hole Oceanographic Institution (WHOI); Tower is approximately 2 miles south of Martha’s Vineyard, MA. Station has a walking platform at approximately 11 m MSL, with a section of lattice mast that extends from the platform to approximately 21 m MSL. The walking platform has a “diving board” extension oriented southwest, on which the lidar is deployed. The lidar sits upon a work bench mounted outboard of the southeast side of the diving board. Figure 1 illustrates the site configuration Aside from the immediate structure, the closest obstruction is Martha’s vineyard. Open ocean fetch for the southern half of the compass; Site access controlled by WHOI; additional site details attached separately.

Description: On Aug 16-17, 2018 a rhodamine dye experiment was conducted in the coastal ocean south of Martha’s Vineyard, MA. One of the experiment’s aims was to investigate the exchanges, or the absence of such, between the mixed layer and the ocean underneath over a time scale of about a day.

Description: NSF EAR-1520825

Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Coskun, O. K., Vuillemin, A., Schubotz, F., Klein, F., Sichel, S. E., Eisenreich, W., & Orsi, W. D. Quantifying the effects of hydrogen on carbon assimilation in a seafloor microbial community associated with ultramafic rocks. Isme Journal. (2021), https://doi.org/10.1038/s41396-021-01066-x.

Description: Thermodynamic models predict that H2 is energetically favorable for seafloor microbial life, but how H2 affects anabolic processes in seafloor-associated communities is poorly understood. Here, we used quantitative 13C DNA stable isotope probing (qSIP) to quantify the effect of H2 on carbon assimilation by microbial taxa synthesizing 13C-labeled DNA that are associated with partially serpentinized peridotite rocks from the equatorial Mid-Atlantic Ridge. The rock-hosted seafloor community was an order of magnitude more diverse compared to the seawater community directly above the rocks. With added H2, peridotite-associated taxa increased assimilation of 13C-bicarbonate and 13C-acetate into 16S rRNA genes of operational taxonomic units by 146% (±29%) and 55% (±34%), respectively, which correlated with enrichment of H2-oxidizing NiFe-hydrogenases encoded in peridotite-associated metagenomes. The effect of H2 on anabolism was phylogenetically organized, with taxa affiliated with Atribacteria, Nitrospira, and Thaumarchaeota exhibiting the most significant increases in 13C-substrate assimilation in the presence of H2. In SIP incubations with added H2, an order of magnitude higher number of peridotite rock-associated taxa assimilated 13C-bicarbonate, 13C-acetate, and 13C-formate compared to taxa that were not associated with peridotites. Collectively, these findings indicate that the unique geochemical nature of the peridotite-hosted ecosystem has selected for H2-metabolizing, rock-associated taxa that can increase anabolism under high H2 concentrations. Because ultramafic rocks are widespread in slow-, and ultraslow-spreading oceanic lithosphere, continental margins, and subduction zones where H2 is formed in copious amounts, the link between H2 and carbon assimilation demonstrated here may be widespread within these geological settings.

Description: This work was supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—Project-ID 364653263—TRR 235 to WDO and WE, and under Germany’s Excellence Strategy—EXC 2077-390741603. The work was also supported by the Dalio Explore Fund and LMU Mentoring Program. Open Access funding enabled and organized by Projekt DEAL.

Description: We recount here a series of attempts to tag and track whales at sea without catching them. Radio transmitters of 140 Mc were attached to the backs of whales from helicopters. Tracking the tagged whales was attempted by ship and by airplane receiving systems.

Description: Submitted to the Office of Naval Research under Contract Nonr-4446.

Description: Sound sources are designed to provide subsea tracking and re‐location of RAFOS floats and other Lagrangian drifters listening at 260Hz. More recently sweeps have been added to support FishChip tracking at 262Hz. These sources must be tuned to the water properties where they are to be deployed as they have a fairly narrow bandwidth. The high‐Q resonator’s bandwidth is about 4Hz. This report documents the tuning, and provides an overview of the sound source assembly.

Description: Funding was provided by the National Science Foundation under Grant No. OCE01756361

Description: This collection includes scientific instruments and equipment and instrument manuals, catalogs, and other material that are being maintained in conjunction with the collection of oceanographic instruments and equipment presently stored in the Falmouth Technology Park offsite storage facility. Also included in the collection are a video and photographs of a traveling exhibit by the U.S. Navy on historical oceanographic instruments, The Briny Deep Discovered, that included a number of instruments loaned to the Navy by WHOI. The exhibit made its final stop at WHOI to coincide with the Institution's 75th Anniversary, and was located in the lobby of the Clark building. This collection includes scientific equipment and instrument manuals, catalogs, reports, designs, drawings and other material. List of Series: Subject Files Equipment Manuals U.S. Navy Historical Instrument Exhibit WHOI Historical Instrument collection Instrument Development Photographs Oversized Design Drawings

Description: Performance Verification Certificate for Renewable NRG Systems reference Lidar: WLS7-94 on August 2016.

Description: The lidar is re-deployed on the south shelf of the ASIT diving board platform. The site is a three legged fixed tower situated 1 NL south of Martha’s Vineyard in 17 m of water.

Description: The MBLWHOI Library’s Institutional Repository (IR) is a CoreTrustSeal certified repository. We chose to go through this process to demonstrate our commitment to quality stewardship and to be a trusted option for our researchers facing funder and publisher requirements that data be accessible, and more recently, also citable with a DOI. The Library always recommends that researchers deposit data in an appropriate subject or community repository, but there are many cases where the dataset needing a DOI does not fit that scenario. The ability to quickly and easily deposit data in a certified repository is a value added service for our users. Some funders now mandate the data must be deposited in a FAIR repository. Being a CoreTrustSeal certified repository ensures that the MBLWHOI Library’s Institutional Repository practices FAIR principles. This lighting talk will show the steps we went through to become certified, some of the hurdles and benefits, as well our current status as an application reviewer. This process enabled us to review our internal process and procedures and re-examine any outdated practices. It shined a light on places we could improve our documentation and more clearly state our policies. The importance of demonstrating our commitment to quality and the Library’s continued efforts with the repository to remain on the forefront of technology with linked open data, schema.org, etc.

Description: The Ocean Reference Station at 20°S, 85°W under the stratus clouds west of northern Chile is being maintained to provide ongoing climate-quality records of surface meteorology, air-sea fluxes of heat, freshwater, and momentum, and of upper ocean temperature, salinity, and velocity variability. The Stratus Ocean Reference Station (ORS Stratus) is supported by the National Oceanic and Atmospheric Administration’s (NOAA) Climate Observation Program. It is recovered and redeployed annually, with past cruises that have come between October and May. This cruise was conducted on the NOAA research vessel Ronald H. Brown. During the 2017 cruise on the Ronald H. Brown to the ORS Stratus site, the primary activities were the recovery of the previous (Stratus 15) WHOI surface mooring, deployment of the new Stratus 16 WHOI surface mooring, in-situ calibration of the buoy meteorological sensors by comparison with instrumentation installed on the ship, CTD casts near the moorings. Surface drifters and ARGO floats were also launched along the track.

Description: Funding was provided by the National Oceanic and Atmospheric Administration under Grant No. NA14OAR4320158

Description: The Surface Ocean – Lower Atmosphere Study (SOLAS) (http://www.solas-int.org/) is an international research initiative focused on understanding the key biogeochemical-physical interactions and feedbacks between the ocean and atmosphere that are critical elements of climate and global biogeochemical cycles. Following the release of the SOLAS Decadal Science Plan (2015-2025) (Brévière et al., 2016), the Ocean-Atmosphere Interaction Committee (OAIC) was formed as a subcommittee of the Ocean Carbon and Biogeochemistry (OCB) Scientific Steering Committee to coordinate US SOLAS efforts and activities, facilitate interactions among atmospheric and ocean scientists, and strengthen US contributions to international SOLAS. In October 2019, with support from OCB, the OAIC convened an open community workshop, Ocean-Atmosphere Interactions: Scoping directions for new research with the goal of fostering new collaborations and identifying knowledge gaps and high-priority science questions to formulate a US SOLAS Science Plan. Based on presentations and discussions at the workshop, the OAIC and workshop participants have developed this US SOLAS Science Plan. The first part of the workshop and this Science Plan were purposefully designed around the five themes of the SOLAS Decadal Science Plan (2015-2025) (Brévière et al., 2016) to provide a common set of research priorities and ensure a more cohesive US contribution to international SOLAS.

Description: This report was developed with federal support of NSF (OCE-1558412) and NASA (NNX17AB17G).

Description: This data was collected by a team led by Kirincich as part of a Metocean monitoring campaign sponsored by the Massachusetts Clean Energy Center (MassCEC). The campaign was designed to observe key atmospheric and ocean parameters at an existing offshore platform in the proximity of the Massachusetts and Rhode Island Wind Energy Areas. The campaign supported the purchase and installation of a LIDAR wind profiler, two cup anemometers and a wind direction vane at the MVCO Air-Sea Interaction Tower (ASIT). These instruments were installed and operated by WHOI and validated by UL-AWS Truepower following a MetOcean Measurement Plan created by UL-AWST, WHOI, and the MassCEC. All instruments were installed on WHOI's offshore tower in the fall of 2016 and operated continuously, as possible, through the end of 2020. After this time the project transitioned to become the MetOcean Reference Site (MORS-1), supported by the National Offshore Wind Research and Development Consortium (NOWRDC).

Description: This zipped content contains Lidar summary data: Daily 10-minute average files from 53-200m amsl for 2021.

Description: This data was collected by a team led by Kirincich as part of a Metocean monitoring campaign sponsored by the Massachusetts Clean Energy Center (MassCEC). The campaign was designed to observe key atmospheric and ocean parameters at an existing offshore platform in the proximity of the Massachusetts and Rhode Island Wind Energy Areas. The campaign supported the purchase and installation of a LIDAR wind profiler, two cup anemometers and a wind direction vane at the MVCO Air-Sea Interaction Tower (ASIT). These instruments were installed and operated by WHOI and validated by UL-AWS Truepower following a MetOcean Measurement Plan created by UL-AWST, WHOI, and the MassCEC. All instruments were installed on WHOI's offshore tower in the fall of 2016 and operated continuously, as possible, through the end of 2020. After this time the project transitioned to become the MetOcean Reference Site (MORS-1), supported by the National Offshore Wind Research and Development Consortium (NOWRDC).

Description: Data Workup From AMPHORA Site This is a list of the work to be done on the data from the AMPHORA Site. All these data are from STARELLA Leg DSL88-02. No data from Starella Leg 1 or the Knorr cruise are included in this list.

Description: R/V Knorr Voyage 134-15 Fiber Optic Mangus Lowering Observations August 1988

Description: The following lists actual and relative positions for 2 critical pieces in the AMPHORA Site- the WRECK and the BROKEN AMPHORA. First, some comments. All LAT/LON positional data are referenced to GPS. The actual positions from the STARELLA 88 data are reliable. The actual position (only located the broken AMPHORA on that trip) from the KNORR 88 data is not reliable for reasons which are detailed in a separate note to Tom Crook. In which case, the relative positions are important.

Description: Navigation Log for MV Carolyn Chouest Skerki Bank June 1997

Description: Argo data log Jason I Jaspro 88

Description: These are the observational data collected in 2017 from the North River estuary. Data files include the long-term (LT) CTD and Aquadopp measurements from April to July, the short-term (STI from April to May and STII in late July) CTD measurements, eight shipboard CTD and ADCP surveys in April, May and July, the ADV measurements in late July, the North River mid-estuary region bathymetry, and the North River discharge (from USGS measurements).

Description: National Science Foundation#1634480

Description: A collection of documentation, memos, notes and log files relating to Long Baseline Acoustic Navigation, SHARPS navigation, vehicle control and JASON ROV general information.

Description: This is a list of the work to be done on the data from the AMPHORA site. All these data are from STARELLA Leg DSLBB-02. No data from Starella Leg 1 or the Knorr cruise are included in this list.

Description: The goals of this cruise are to test the dynamic positioning system, including all sensors and interfaces. We hope to gather data under a variety of sea conditions and quantify performance. The following control configurations will be tested: 1. Automatic heading. 2. Open-loop position keeping with wind compensation . 3. Automatic track following : ARGONAV , forward cycloid only. 4. Automatic position control: ARGONAV, both cycloids. 5. Automatic track following: ARGONAV, both cyc l oi ds. 6. Automatic position control : GPS. 7. Automatic track following: GPS.

Description: Marsili Seamount Louise Jone's data log

Description: The Northwest Tropical Atlantic Station (NTAS) was established to address the need for accurate air-sea flux estimates and upper ocean measurements in a region with strong sea surface temperature anomalies and the likelihood of significant local air–sea interaction on interannual to decadal timescales. The approach is to maintain a surface mooring outfitted for meteorological and oceanographic measurements at a site near 15°N, 51°W by successive mooring turnarounds. These observations will be used to investigate air–sea interaction processes related to climate variability. This report documents recovery of the NTAS-18 mooring and deployment of the NTAS-19 mooring at the same site. Both moorings used Surlyn foam buoys as the surface element. These buoys were outfitted with two Air–Sea Interaction Meteorology (ASIMET) systems. Each system measures, records, and transmits via Argos satellite the surface meteorological variables necessary to compute air–sea fluxes of heat, moisture and momentum. The upper 160 m of the mooring line were outfitted with oceanographic sensors for the measurement of temperature, salinity and velocity. Deep ocean temperature and salinity are measured at approximately 38 m above the bottom. The mooring turnaround was done on the National Oceanic and Atmospheric Administration (NOAA) Ship Ronald H. Brown, Cruise RB-20-06, by the Upper Ocean Processes Group of the Woods Hole Oceanographic Institution. The cruise took place between 14 October and 1 November 2020. The NTAS-19 mooring was deployed on 22 October, with an anchor position of about 14° 49.48° N, 51° 00.96° W in 4985 m of water. A 31-hour intercomparison period followed, during which satellite telemetry data from the NTAS-19 buoy and the ship’s meteorological sensors were monitored. The NTAS-18 buoy, which had gone adrift on 28 April 2020, was recovered on 20 October near 13° 41.96° N, 58° 38.67° W. This report describes these operations, as well as other work done on the cruise and some of the pre-cruise buoy preparations.

Description: Funding was provided by the National Oceanic and Atmospheric Administration under Grant No. NA19OAR4320074.

Description: The purpose of the Brazil Basin Tracer Release Experiment is to measure diapycnal (across isopycnal) mixing and epipycnal (along-isopycnal) mixing and stirring in the deep ocean. This cruise is the fourth in the overall experiment. In the first cruise in early 1996, 110 kg of sulfur hexafluoride (SF6) were released on an isopycnal surface near 4000 meters depth in the eastern part of the basin on the flanks of the Mid-Atlantic Ridge (MAR). The location of the release was near 21.7 S, 18.4 W. The release site was over a zonal valley that leads to the MAR and is about 5000 m deep. The isopycnal surface of the release was defined as the surface on which the potential density anomaly, referenced to 4000 dbar pressure, was 45.9408 kg/m3. The release streaks and results of initial sampling in 1996 are described in Polzin et al. [1997].

Description: © The Author(s), 2004. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hayes, J. M. (2004). An Introduction to Isotopic Calculations. Woods Hole Oceanographic Institution, https://doi.org/10.1575/1912/27058.

Description: These notes provide an introduction to: • Methods for the expression of isotopic abundances, • Isotopic mass balances, and • Isotope effects and their consequences in open and closed systems.

Description: Figures 1, 2, 6, and 9 were prepared by Steve Studley. These notes derive from teaching materials prepared for classes at Indiana University, Bloomington, and at Harvard University, Cambridge, Massachusetts. I am grateful to the students in those classes and for support provided by those institutions and by the National Science Foundation (OCE-0228996).

Description: Performance Verification Certificate for Renewable NRG Systems reference Lidar: WLS7-94 on July 2019.

Description: The Ocean Reference Station at 20°S, 85°W under the stratus clouds west of northern Chile is being maintained to provide ongoing climate-quality records of surface meteorology, air-sea fluxes of heat, freshwater, and momentum, and of upper ocean temperature, salinity, and velocity variability. The Stratus Ocean Reference Station (ORS Stratus) is supported by the National Oceanic and Atmospheric Administration’s (NOAA) Climate Observation Program. It is recovered and redeployed annually, with past cruises that have come between October and May. This cruise was conducted on the Chilean research vessel Cabo de Hornos. During the 2018 cruise on the Cabo de Hornos to the ORS Stratus site, the primary activities were the recovery of the previous (Stratus 16) WHOI surface mooring, deployment of the new Stratus 17 WHOI surface mooring, in-situ calibration of the buoy meteorological sensors by comparison with instrumentation installed on the ship, CTD casts near the moorings. The Stratus 17 had parted from its anchor site on January 4 2018, so its recovery was done in two separate operations: first the drifting buoy with mooring line under it, then the bottom part still attached to the anchor. Surface drifters and ARGO floats were also launched along the track.

Description: Funding was provided by the National Oceanic and Atmospheric Administration under Grant No. NA14OAR4320158.

Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Castro, S. P., Borton, M. A., Regan, K., de Angelis, I. H., Wrighton, K. C., Teske, A. P., Strous, M., & Ruff, S. E. Degradation of biological macromolecules supports uncultured microbial populations in Guaymas Basin hydrothermal sediments. Isme Journal. (2021), https://doi.org/10.1038/s41396-021-01026-5.

Description: Hydrothermal sediments contain large numbers of uncultured heterotrophic microbial lineages. Here, we amended Guaymas Basin sediments with proteins, polysaccharides, nucleic acids or lipids under different redox conditions and cultivated heterotrophic thermophiles with the genomic potential for macromolecule degradation. We reconstructed 20 metagenome-assembled genomes (MAGs) of uncultured lineages affiliating with known archaeal and bacterial phyla, including endospore-forming Bacilli and candidate phylum Marinisomatota. One Marinisomatota MAG had 35 different glycoside hydrolases often in multiple copies, seven extracellular CAZymes, six polysaccharide lyases, and multiple sugar transporters. This population has the potential to degrade a broad spectrum of polysaccharides including chitin, cellulose, pectin, alginate, chondroitin, and carrageenan. We also describe thermophiles affiliating with the genera Thermosyntropha, Thermovirga, and Kosmotoga with the capability to make a living on nucleic acids, lipids, or multiple macromolecule classes, respectively. Several populations seemed to lack extracellular enzyme machinery and thus likely scavenged oligo- or monomers (e.g., MAGs affiliating with Archaeoglobus) or metabolic products like hydrogen (e.g., MAGs affiliating with Thermodesulfobacterium or Desulforudaceae). The growth of methanogens or the production of methane was not observed in any condition, indicating that the tested macromolecules are not degraded into substrates for methanogenesis in hydrothermal sediments. We provide new insights into the niches, and genomes of microorganisms that actively degrade abundant necromass macromolecules under oxic, sulfate-reducing, and fermentative thermophilic conditions. These findings improve our understanding of the carbon flow across trophic levels and indicate how primary produced biomass sustains complex and productive ecosystems.

Description: We are grateful to the captain and crew of the R/V Atlantis AT37-06 as well as the crew of the human occupied vehicle Alvin for their tireless support. Sampling at Guaymas Basin was supported by NSF (OCE-1357238).

Description: This collection of brief "summaries of investigations" has been prepared by the members of the research staff of the Woods Hole Oceanographic Institution and this volume is a continuation of our early traditions. For the first decade or so reports of progress by individual investigators were included as an appendix to each annual report. There were only fourteen such summaries occupying less than seven pages in the 1931 Annual Report; there were but thirteen persons on the research staff at that time. With the expansion of the Institution during the World War II years it became impractical to include a comprehensive report of progress for each investigator, but the Annual Reports did continue to describe very briefly the work being done by each. With the continued expansion of the Institution the printed annual report has become more and more impersonal and the lack of a comprehensive summary of current investigations has been apparent to all. The Collected Reprints of the Institution have continued to provide a record of the scientific results obtained by our staff members, but publication delays make these at least a year out-of-date before they appear. This report is the sixth in the series of Summaries of Investigations. They are similar in style to the reports of progress included as appendices to earlier Annual Reports and a limited number of copies is available. This collection of summaries is intended not only to supplement the limited information about the scientific investigations included in the Annual Report for 1967, but also to let our friends and associates know what each individual staff member is currently studying. These summaries have been reviewed by the department chairmen but typed, insofar as possible, without editorial change, adhering strictly to the original manuscript in most cases.

Description: A very large part of the support of our research programs came from the agencies and departments of the Federal Government listed below. We wish to express our thanks to these organizations as a whole and to the executives and administrators in them who have been so helpful to us during the past year. Acknowledgment of Support Atomic Energy Commission Coast and Geodetic Survey U. S. Coast Guard Office of Naval Research Fish and Wildlife Service, Bureau of Commerical Fisheries U. S. Geological Survey National Science Foundation Naval Ship Systems Command Naval Air Systems Command National Institutes of Health National Aeronautics and Space Administration The support for our research programs provided by private foundations and organizations, individuals and the Associates of the Woods Hole Oceanographic Institution is also very much appreciated, for it enabled us to initiate projects for research or education which could not be funded through Federal agencies.

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bayer, B., Saito, M. A., McIlvin, M. R., Lucker, S., Moran, D. M., Lankiewicz, T. S., Dupont, C. L., & Santoro, A. E. (2020). Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions. Isme Journal, doi:10.1038/s41396-020-00828-3.

Description: The genus Nitrospira is the most widespread group of nitrite-oxidizing bacteria and thrives in diverse natural and engineered ecosystems. Nitrospira marina Nb-295T was isolated from the ocean over 30 years ago; however, its genome has not yet been analyzed. Here, we investigated the metabolic potential of N. marina based on its complete genome sequence and performed physiological experiments to test genome-derived hypotheses. Our data confirm that N. marina benefits from additions of undefined organic carbon substrates, has adaptations to resist oxidative, osmotic, and UV light-induced stress and low dissolved pCO2, and requires exogenous vitamin B12. In addition, N. marina is able to grow chemoorganotrophically on formate, and is thus not an obligate chemolithoautotroph. We further investigated the proteomic response of N. marina to low (∼5.6 µM) O2 concentrations. The abundance of a potentially more efficient CO2-fixing pyruvate:ferredoxin oxidoreductase (POR) complex and a high-affinity cbb3-type terminal oxidase increased under O2 limitation, suggesting a role in sustaining nitrite oxidation-driven autotrophy. This putatively more O2-sensitive POR complex might be protected from oxidative damage by Cu/Zn-binding superoxide dismutase, which also increased in abundance under low O2 conditions. Furthermore, the upregulation of proteins involved in alternative energy metabolisms, including Group 3b [NiFe] hydrogenase and formate dehydrogenase, indicate a high metabolic versatility to survive conditions unfavorable for aerobic nitrite oxidation. In summary, the genome and proteome of the first marine Nitrospira isolate identifies adaptations to life in the oxic ocean and provides insights into the metabolic diversity and niche differentiation of NOB in marine environments.

Description: We thank John B. Waterbury and Frederica Valois for providing the culture of Nitrospira marina Nb-295T and for continued advice about cultivation. The N. marina genome was sequenced as part of US Department of Energy Joint Genome Institute Community Sequencing Project 1337 to CLD, AES, and MAS in collaboration with the user community. We thank Claus Pelikan for bioinformatic assistance. This research was supported by a Simons Foundation Early Career Investigator in Marine Microbiology and Evolution Award (345889) and US National Science Foundation (NSF) award OCE-1924512 to AES. Proteomics analysis was supported by NSF awards OCE-1924554 and OCE-1850719, and NIH award R01GM135709 to MAS. BB was supported by the Austrian Science Fund (FWF) Project Number: J4426-B (“The influence of nitrifiers on the oceanic carbon cycle”), SL by the Netherlands Organization for Scientific Research (NWO) grant 016.Vidi.189.050, and CLD by NSF award OCE-125999.

Description: The following lists actual and relative positions for 2 critical pieces in the AMPHORA Site- the WRECK and the BROKEN AMPHORA. First, some comments. All LAT/LON positional data are referenced to GPS. The actual positions from the STARELLA 88 data are reliable. The actual position (only located the broken AMPHORA on that trip) from the KNORR 88 data is not reliable for reasons which are detailed in a separate note to Tom Crook. In which case, the relative positions are important.

Description: We have developed a hollow core fiber optic sensor capable of measuring dissolved methane gas in liquids using only nanoliters of sample gas. The sensor is based on an anti-resonant hollow core fiber combined with a permeable capillary membrane inlet which extracts gas from the liquid for analysis.

Description: Woods Hole Oceanographic Institution Innovative Technology Award Schmidt Marine Technology Partners G-2004-59353 NOAA Office of Ocean Exploration and ResearchNA18OAR0110354

Description: Dissociation of methane hydrates due to ocean warming releases methane, a powerful greenhouse gas, to the atmosphere. Dissociation of gas hydrates may have led to rapid and dramatic environmental changes in the past. Thus, understanding the impact of those events requires information about their timing and magnitudes. While the foraminiferal fossil record provides a powerful tool to understand past environmental conditions, seep-endemic foraminifera are unknown, which limits evaluation of seep-specific information. However, geographically widespread benthic foraminifera do inhabit seep sites, as documented widely in the literature, and may provide information useful to the understanding of past methane releases. In an effort to better understand how benthic foraminifera inhabit this chemosynthesis-based ecosystem, and if they faithfully record the methane emissions, we conducted a multipronged analysis of foraminifera associated with a gas hydrate emission site in the Arctic. Our goal was to simultaneously assess, in single representative calcareous benthic foraminiferal individuals, the cell biology, test stable carbon isotope ratio, and carbonate microstructure (e.g., wall thickness, survey for authigenic overgrowths), from samples collected south of Svalbard, or on Vestnesa Ridge, west of Svalbard). Serially, each specimen was scanned with microCT (computerized tomography) to assess test characteristics, then the test dissolved by acidification while capturing gas to measure stable carbon isotope ratio via continuous-flow mass spectrometry, and finally the remaining soft parts embedded and examined for cell ultrastructure with a Transmission Electron Microscope (TEM). TEM). Data from isotopic analyses, microCT scans and TEM imaging are presented here.

Description: This project was funded by NSF (WHOI)OCE-1634469 NSF (UFL)OCE-1634248 Norwegian Research Council223259

Description: High-frequency radar-based observations of surface currents along the east coast of Taiwan, obtained over a 50-day period in early 2017, are used to examine the occurrence, generation, and downstream advection of submesoscale eddies in the Kuroshio. Measured at an effective depth of 2 m and radial resolution of 3 km from four land-based HF radar systems spanning an 250-km along-stream distance, the surface current observations reveal the instantaneous position of the Kuroshio on hourly time scales as well as the occurrence of numerous high relative vorticity features. Vortex features with spatial scales of 5-20 km were concentrated in the first 30 km offshore, with many created at the southern tip of Taiwan on tidal timescales. Most features, with relative vorticities approaching zeta/f=1, translated northward along the coast at the speed of the Kuroshio itself and were coherent over the 250-km length of the Taiwanese coastline. Both tides and regional winds appear to influence when long-lived features form, and the offshore advection of surface waters by the vortices are observable in intermittent Satellite images of surface chlorophyll. While most features are advected northward with the current, a submarine ridge acts to impede the flow, scattering northward moving features and causing occasional southward-migrating vortices. Data Description: DESCRIPTION; The surface current observations used here were obtained from four long-range (4 MHz transmit frequency) land-based coastal radar systems, operated by the Taiwan Ocean Research Institute (TORI) and the National Taiwan University (NTU). All systems were Codar Ocean Sensors SeaSondes, with the three southern stations operated by TORI, and the northern-most station by NTU. Collected over the time period spanning February 1st to March 26th, 2017, the hourly observations of Doppler cross-spectra had a radial resolution of 3 km. Horizontal resolution was dependent on both the resolution of the measured antenna patterns (1 degree in azimuth) as well as the inherent azimuthal resolution of the radar returns themselves. DATA_PREPARATION_DESCRIPTION; Observed Doppler cross-spectra were reprocessed following Kirincich et al. (2012) using adjusted measured antenna patterns and advanced quality control metrics to estimate the radial surface currents observed at each site. Measured antenna response patterns were adjusted iteratively to reduce radar-to-radar inconsistencies defined using synthetic radials estimated from adjacent radars as well as systematic biases in mean vorticity and divergence patterns. Vector combinations of the radial surface currents, representative of the average currents over the top 2 m of the water column (StewartJoy, 1974) were estimated using power-weighed least-squares methods (Kirincich et al. 2012, Kaplan et al 2005) with a fixed horizontal averaging length-scale of 3 km, and masked for errors due to the geometric dilution of precision (GDOP) greater than 2 (Barrack, 2002). Acquisition Description: SENSOR_INFORMATION; Radio frequency interference from the ionosphere is a particular problem for the TORI and NTU radars, due to a combination of latitude and transmit frequency, causing elevated background noise during local nighttime. Returns at ranges of 90 km, the distance to the primary scattering layer within the ionosphere, are especially affected. SNR was used as an effective screening tool to isolate and eliminate data contaminated by ionospheric radio noise common in the region, adding further improvements to the radial velocity results. However, data from a 50x50 km region directly offshore of the radar site near 23deg 30' N 121deg 30' E was excised during the hours of 11 to 17 UTC each day during the observational period due to poor data returns during times of high ionospheric reflections and radio noise that resulted in poorly resolved and inaccurate vector current estimates. Using synthetic radials from adjacent HFR sites (Emery et al 2019), surface current uncertainties are estimated to be 5-10 cm/s. the west of the 2018-2019 mooring locations. The surface mooring was located at 41.0706degN 70.8177degW in 40 m of water and sampled surface vector winds, air temperature, air pressure, and relative humidity using a Vaisala WXT520 located at 2 m above mean sea level at 10 min ensemble averages, of 1 Hz data. The 2020 surface mooring also had 5 temperature-conductivity sensors (SBE37s) that sampled the oceanic water column at fixed depths below the surface of 0.6,4,6.5,10, and 20-m at 2 min increments. Finally the 2020 subsurface mooring was deployed at 41.0706degN 70.8177degW and contained a sub-surface float at 8-m below sea level in 40 m of water. The float held an upward looking Nortek Signature 1000 AD2CP that collected 2048 pings @4Hz every 20 min at 0.25 m bin depths.

Description: HF Radar observations used here were funded by Taiwan's National Applied Research Laboratories as well as the National Taiwan University. A. Kirincich was funded by the U.S. Office of Naval Research under contract #N000141712761.

Description: Time series of current velocity, water temperature, and salinity profiles, and near-bottom water depth from the 7-m, 12-m, 17-m, and 27-m site of an inner-shelf array deployed as part of the Stratification, Wind, and Waves on the Inner shelf of Martha’s Vineyard (SWWIM) study. There were 6 deployments of an array of four sites across the inner-shelf south of Martha's Vineyard, Massachusetts. The four sites are designated by nominal depth 7-m, 12-m (MVCO node), 17-m and 27-m. Each site consisted of an upwarded looking ADCP mounted on a bottom frame and a surface mooring spanning the water column with temperature and temperature/conductivity instruments. Gaps between deployments varied from 1 to 2 months. Each site was off the south coast of Martha's Vineyard, Massachusetts and the time series span for all four sites was 11 October 2006 – 5 February 2010. Sites: 7-m site was at 41.347°N 70.556°W, 0.4 km offshore in 7 - 8 m of water 12-m site was at 41.337°N 70.556°W, 1.5 km offshore in 12 m of water 17-m site was at 41.319°N 70.570W, 3.8 km offshore in 17.5 m of water 27-m site was at 41.254°N 70.592°W, 11.1 km offshore in 27.5 m of water

Description: National Science Foundation: OCE-0548961

Description: Presented at Fall AGU (ESIP Data Helpdesk), New Orleans, 11-17, December 2021

Description: BCO-DMO curates a database of research-ready data spanning the full range of marine ecosystem related measurements including in-situ and remotely sensed observations, experimental and model results, and synthesis products. We work closely with investigators to publish data and information from research projects supported by the National Science Foundation (NSF), as well as those supported by state, private, and other funding sources. BCO-DMO supports all phases of the data life cycle and ensures open access of well-curated project data and information. We employ F.A.I.R. Principles that comprise a set of values intended to guide data producers and publishers in establishing good data management practices that will enable effective reuse.

Description: Award(s): NSF #1924618