ALBERT

Description: Polynoidae contains ~900 species within 18 subfamilies, some of them restricted to the deep sea. Macellicephalinae is the most diverse among these deep-sea subfamilies. In the abyssal Equatorial Pacific Ocean, the biodiversity of benthic communities is at stake in the Clarion-Clipperton Fracture Zone (CCFZ) owing to increased industrial interest in polymetallic nodules. The records of polychaetes in this region are scarce. Data gathered during the JPI Oceans cruise SO239 made a significant contribution to fill this gap, with five different localities sampled between 4000 and 5000 m depth. Benthic samples collected using an epibenthic sledge or a remotely operated vehicle resulted in a large collection of polynoids. The aims of this study are as follows: (1) to describe new species of deep-sea polynoids using morphology and molecular data (COI, 16S and 18S); and (2) to evaluate the monophyly of Macellicephalinae. Based on molecular and morphological phylogenetic analyses, ten subfamilies are synonymized with Macellicephalinae in order to create a homogeneous clade determined by the absence of lateral antennae. Within this clade, the Anantennata clade was well supported, being determined by the absence of a median antenna. Furthermore, 17 new species and four new genera are described, highlighting the high diversity hidden in the deep. A taxonomic key for the 37 valid genera of the subfamily Macellicephalinae is provided.

Description: Metabolites give us a window into the chemistry of microbes and are split into two subclasses: primary and secondary. Primary metabolites are required for life whereas secondary metabolites have historically been classified as those appearing after exponential growth and are not necessarily needed for survival. Many microbial species are estimated to produce hundreds of metabolites and can be affected by differing nutrients. Using various analytical techniques, metabolites can be directly detected in order to elucidate their biological significance. Currently, a single experiment can produce anywhere from megabytes to terabytes of data. This big data has motivated scientists to develop informatics tools to help target specific metabolites or sets of metabolites. Broadly, it is imperative to identify clear biological questions before embarking on a study of metabolites (metabolomics). For instance, studying the effect of a transposon insertion on phenazine biosynthesis in Pseudomonas is a very different from asking what molecules are present in a specific banana-derived strain of Pseudomonas. This review is meant to serve as a primer for a ‘choose your own adventure’ approach for microbiologists with limited mass spectrometry expertise, with a strong focus on liquid chromatography mass spectrometry based workflows developed or optimized within the past five years.

Description: The distribution of the main water masses in the Atlantic Ocean are investigated with the Optimal Multi-Parameter (OMP) method. The properties of the main water masses in the Atlantic Ocean are described in a companion article; here these definitions are used to map out the general distribution of those water masses. Six key properties, including conservative (potential temperature and salinity) and non-conservative (oxygen, silicate, phosphate and nitrate), are incorporated into the OMP analysis to determine the contribution of the water masses in the Atlantic Ocean based on the GLODAP v2 observational data. To facilitate the analysis the Atlantic Ocean is divided into four vertical layers based on potential density. Due to the high seasonal variability in the mixed layer, this layer is excluded from the analysis. Central waters are the main water masses in the upper/central layer, generally featuring high potential temperature and salinity and low nutrient concentrations and are easily distinguished from the intermediate water masses. In the intermediate layer, the Antarctic Intermediate Water (AAIW) from the south can be detected to ~30°N, whereas the Subarctic Intermediate Water (SAIW), having similarly low salinity to the AAIW flows from the north. Mediterranean Overflow Water (MOW) flows from the Strait of Gibraltar as a high salinity water. NADW dominates the deep and overflow layer both in the North and South Atlantic. In the bottom layer, AABW is the only natural water mass with high silicate signature spreading from the Antarctic to the North Atlantic. Due to the change of water mass properties, in this work we renamed to North East Antarctic Bottom Water NEABW north of the equator. Similarly, the distributions of Labrador Sea Water (LSW), Iceland Scotland Overflow Water (ISOW), and Denmark Strait Overflow Water (DSOW) forms upper and lower portion of NADW, respectively roughly south of the Grand Banks between ~50 and 66°N. In the far south the distributions of Circumpolar Deep Water (CDW) and Weddell Sea Bottom Water (WSBW) are of significance to understand the formation of the AABW.

Description: The northeast Atlantic encompasses archetypal examples of volcanic rifted margins. Twenty-five years after the last ODP (Ocean Drilling Program) leg on these volcanic margins, the reasons for excess melting are still disputed with at least three competing hypotheses being discussed. We are proposing a new drilling campaign that will constrain the timing, rates of volcanism, and vertical movements of rifted margins. This will allow us to parameterise geodynamic models that can distinguish between the hypotheses. Furthermore, the drilling-derived data will help us to understand the role of breakup magmatism as a potential driver for the Palaeocene–Eocene thermal maximum (PETM) and its influence on the oceanographic circulation in the earliest phase of the northeast Atlantic Ocean formation. Tackling these questions with a new drilling campaign in the northeast Atlantic region will advance our understanding of the long-term interactions between tectonics, volcanism, oceanography, and climate and the functioning of subpolar northern ecosystems and climate during intervals of extreme warmth.

Description: The El Niño Southern Oscillation (ENSO) with its warm (El Niño) and cold (La Niña) phase has strong impacts on marine ecosystems off Peru. This influence extends from changes in nutrient availability to productivity and oxygen levels. While several studies have demonstrated the influence of ENSO events on biological productivity, less is known about their impact on oxygen concentrations. In situ observations along the Peruvian and Chilean coast have shown a strong water column oxygenation during the 1997/1998 strong El Niño event. These observations suggest a deepening of the oxygen minimum zone (OMZ) along the continental shelf. However, due to reduced spatial coverage of the existing in situ observations, no studies have yet demonstrated the OMZ response to El Niño events in the whole Eastern Tropical South Pacific (ETSP). Furthermore, most studies have focused on El Niño events. Much less attention was given to the oxygen dynamics under La Niña influence. Here, we provide a comprehensive analysis of the ENSO influence on OMZ dynamics. Interannual variability of the OMZ during the period 1990–2010 is derived from a regional coupled physical-biogeochemical model forced with realistic atmospheric and lateral boundary conditions. Our results show a reduction of the vertical extent and a deepening of suboxic waters (SW) during the El Niño phase. During the La Niña phase, there is a vertical expansion of SW. These fluctuations in OMZ extent are due to changes in oxygen supply into its core depth mainly from lateral margins. During the El Niño phase, the enhanced lateral oxygen supply from the subtropics is the main reason for the reduction of SW in both coastal and offshore regions. During the La Niña phase, the oxygenated subtropical waters are blocked by the poleward transport along the southern margin of the OMZ. Consequently, oxygen concentrations within the OMZ are reduced and suboxic conditions expand during La Niña. The detailed analysis of transport pathways presented here provides new insights into how ENSO variability affects the oxygen-sensitive marine biogeochemistry of the ETSP.

Description: Oxygen minimum zones (OMZs) in the open ocean occur below the surface in regions of weak ventilation and high biological productivity. Very low levels of dissolved oxygen affect marine life and alter biogeochemical cycles. One of the most intense but least understood OMZs in the world is located in the Arabian Sea in a depth range between 300 to 1000 m. Within the last decades observations suggest a decreasing oxygen trend. Thus, an improved understanding of the crucial processes is necessary for a reliable assessment of the future development of the Arabian Sea OMZ. This study uses a combination of observational data as well as reanalysis velocity fields from the ocean model Hycom (Hybrid Coordinate Ocean Model) to explore the ventilation dynamics of the Arabian Sea OMZ. Our results show that the OMZ features a strong seasonal cycle with regional differences that is correlated with the monsoon system: In the eastern basin, the OMZ is strongest during the winter monsoon with a core thickness of 1000 m depth and oxygen values of less than 5 µmol/kg. Ventilation during that phase is dominated by Persian Gulf water, that clockwise circles the perimeter of the basin and enters the OMZ from the north. During the summer monsoon ventilation from the southeast leads to higher oxygen values indicating a reverse flow along the Indian coast in the intermediate layer compared to the southeastward surface currents. The seasonal cycle in the western basin has the same seasonality as the one in the eastern basin with a core thickness of 900 m during the winter monsoon. The oxygen supply during the summer monsoon is weaker compared to the eastern basin and correlates with the ventilation of Persian Gulf (Red Sea) water during the summer monsoon (autumn inter-monsoon) phase. As the interior exchange between the eastern and western basin is weak, the more pronounced OMZ in the eastern basin is explained by prolonged ventilation time scales. For the eastern (western) basin Persian Gulf water needs 2–3 (1–2) years and Red Sea water 7–8 (3–4) years to ventilate the OMZ.

Description: Marine prey and predators will respond to future climate through physiological and behavioral adjustments. However, our understanding of how such direct effects may shift the outcome of predator–prey interactions is still limited. Here, we investigate the effects of ocean warming and acidification on foraging behavior and biomass of a common prey (shrimps, Palaemon spp.) tested in large mesocosms harboring natural resources and habitats. Acidification did not alter foraging behavior in prey. Under warming, however, prey showed riskier behavior by foraging more actively and for longer time periods, even in the presence of a live predator. No effects of longer-term exposure to climate stressors were detected on prey biomass. Our findings suggest that ocean warming may increase the availability of some prey to predators via a behavioral pathway (i.e., increased risk-taking by prey), likely by elevating metabolic demand of prey species.

Description: Ice sheet numerical modeling is an important tool to estimate the dynamic contribution of the Antarctic ice sheet to sea level rise over the coming centuries. The influence of initial conditions on ice sheet model simulations, however, is still unclear. To better understand this influence, an initial state intercomparison exercise (initMIP) has been developed to compare, evaluate, and improve initialization procedures and estimate their impact on century-scale simulations. initMIP is the first set of experiments of the Ice Sheet Model Intercomparison Project for CMIP6 (ISMIP6), which is the primary Coupled Model Intercomparison Project Phase 6 (CMIP6) activity focusing on the Greenland and Antarctic ice sheets. Following initMIP-Greenland, initMIP-Antarctica has been designed to explore uncertainties associated with model initialization and spin-up and to evaluate the impact of changes in external forcings. Starting from the state of the Antarctic ice sheet at the end of the initialization procedure, three forward experiments are each run for 100 years: a control run, a run with a surface mass balance anomaly, and a run with a basal melting anomaly beneath floating ice. This study presents the results of initMIP-Antarctica from 25 simulations performed by 16 international modeling groups. The submitted results use different initial conditions and initialization methods, as well as ice flow model parameters and reference external forcings. We find a good agreement among model responses to the surface mass balance anomaly but large variations in responses to the basal melting anomaly. These variations can be attributed to differences in the extent of ice shelves and their upstream tributaries, the numerical treatment of grounding line, and the initial ocean conditions applied, suggesting that ongoing efforts to better represent ice shelves in continental-scale models should continue.

Description: Climate change influences the Baltic Sea ecosystem via its effects on oceanography and biogeochemistry. Sea surface temperature has been projected to increase by 2 to 4 °C until 2100 due to global warming; the changes will be more significant in the northern areas and less so in the south. The warming up will also diminish the annual sea ice cover by 57% to 71%, and ice season will be one to three months shorter than in the early 21st century, depending on latitude. A significant decrease in sea surface salinity has been projected because of an increase in rainfall and decrease of saline inflows into the Baltic Sea. The increasing surface flow has, in turn, been projected to increase leaching of nutrients from the soil to the watershed and eventually into the Baltic Sea. Also, acidification of the seawater and sea-level rise have been predicted. Increasing seawater temperature speeds up metabolic processes and increases growth rates of many secondary producers. Species associated with sea ice, from salt brine microbes to seals, will suffer. Due to the specific salinity tolerances, species’ geographical ranges may shift by tens or hundreds of kilometres with decreasing salinity. A decrease in pH will slow down calcification of bivalve shells, and higher temperatures also alleviate establishment of non-indigenous species originating from more southern sea areas. Many uncertainties still remain in predicting the couplings between atmosphere, oceanography and ecosystem. Especially projections of many oceanographic parameters, such as wind speeds and directions, the mean salinity level, and density stratification, are still ambiguous. Also, the effects of simultaneous changes in multiple environmental factors on species with variable preferences to temperature, salinity, and nutrient conditions are difficult to project. There is, however, enough evidence to claim that due to increasing runoff of nutrients from land and warming up of water, primary production and sedimentation of organic matter will increase; this will probably enhance anoxia and release of phosphorus from sediments. Such changes may keep the Baltic Sea in an eutrophicated state for a long time, unless strong measures to decrease nutrient runoff from land are taken. Changes in the pelagic and benthic communities are anticipated. Benthic communities will change from marine to relatively more euryhaline communities and will suffer from hypoxic events. The projected temperature increase and salinity decline will contribute to maintain the pelagic ecosystem of the Central Baltic and the Gulf of Finland in a state dominated by cyanobacteria, flagellates, small-sized zooplankton and sprat, instead of diatoms, large marine copepods, herring, and cod. Effects vary from area to area, however. In particular the Bothnian Sea, where hypoxia is less common and rivers carry a lot of dissolved organic carbon, primary production will probably not increase as much as in the other basins. The coupled oceanography-biogeochemistry ecosystem models have greatly advanced our understanding of the effects of climate change on marine ecosystems. Also, studies on climate associated “regime shifts” and cascading effects from top predators to plankton have been fundamental for understanding of the response of the Baltic Sea ecosystem to anthropogenic and climatic stress. In the future, modeling efforts should be focusing on coupling of biogeochemical processes and lower trophic levels to the top predators. Also, fine resolution species distribution models should be developed and combined with 3-D modelling, to describe how the species and communities are responding to climate-induced changes in environmental variables.

Description: We present here the first results, for the preindustrial and mid-Holocene climatological periods, of the newly developed isotope-enhanced version of the fully coupled Earth system model MPI-ESM, called hereafter MPI-ESM-wiso. The water stable isotopes H162O, H182O and HDO have been implemented into all components of the coupled model setup. The mid-Holocene provides the opportunity to evaluate the model response to changes in the seasonal and latitudinal distribution of insolation induced by different orbital forcing conditions. The results of our equilibrium simulations allow us to evaluate the performance of the isotopic model in simulating the spatial and temporal variations of water isotopes in the different compartments of the hydrological system for warm climates. For the preindustrial climate, MPI-ESM-wiso reproduces very well the observed spatial distribution of the isotopic content in precipitation linked to the spatial variations in temperature and precipitation rate. We also find a good model–data agreement with the observed distribution of isotopic composition in surface seawater but a bias with the presence of surface seawater that is too 18O-depleted in the Arctic Ocean. All these results are improved compared to the previous model version ECHAM5/MPIOM. The spatial relationships of water isotopic composition with temperature, precipitation rate and salinity are consistent with observational data. For the preindustrial climate, the interannual relationships of water isotopes with temperature and salinity are globally lower than the spatial ones, consistent with previous studies. Simulated results under mid-Holocene conditions are in fair agreement with the isotopic measurements from ice cores and continental speleothems. MPI-ESM-wiso simulates a decrease in the isotopic composition of precipitation from North Africa to the Tibetan Plateau via India due to the enhanced monsoons during the mid-Holocene. Over Greenland, our simulation indicates a higher isotopic composition of precipitation linked to higher summer temperature and a reduction in sea ice, shown by positive isotope–temperature gradient. For the Antarctic continent, the model simulates lower isotopic values over the East Antarctic plateau, linked to the lower temperatures during the mid-Holocene period, while similar or higher isotopic values are modeled over the rest of the continent. While variations of isotopic contents in precipitation over West Antarctica between mid-Holocene and preindustrial periods are partly controlled by changes in temperature, the transport of relatively 18O-rich water vapor near the coast to the western ice core sites could play a role in the final isotopic composition. So, more caution has to be taken about the reconstruction of past temperature variations during warm periods over this area. The coupling of such a model with an ice sheet model or the use of a zoomed grid centered on this region could help to better describe the role of the water vapor transport and sea ice around West Antarctica. The reconstruction of past salinity through isotopic content in sea surface waters can be complicated for regions with strong ocean dynamics, variations in sea ice regimes or significant changes in freshwater budget, giving an extremely variable relationship between the isotopic content and salinity of ocean surface waters over small spatial scales. These complicating factors demonstrate the complexity of interpreting water isotopes as past climate signals of warm periods like the mid-Holocene. A systematic isotope model intercomparison study for further insights on the model dependency of these results would be beneficial.