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  • Oxford University Press  (45,475)
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  • 2020-2024
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  • 1
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    Scaling-up permafrost thermal measurements in western Alaska using an ecotype approach (2016)
    Copernicus
    In:  EPIC3The Cryosphere, Copernicus, 10(5), pp. 2517-2532, ISSN: 1994-0424
    Details
    Publication Date: 2020-09-06
    Description: Permafrost temperatures are increasing in Alaska due to climate change and in some cases permafrost is thawing and degrading. In areas where degradation has already occurred the effects can be dramatic, resulting in changing ecosystems, carbon release, and damage to infrastructure. However, in many areas we lack baseline data, such as subsurface temperatures, needed to assess future changes and potential risk areas. Besides climate, the physical properties of the vegetation cover and subsurface material have a major influence on the thermal state of permafrost. These properties are often directly related to the type of ecosystem overlaying permafrost. In this paper we demonstrate that classifying the landscape into general ecotypes is an effective way to scale up permafrost thermal data collected from field monitoring sites. Additionally, we find that within some ecotypes the absence of a moss layer is indicative of the absence of near-surface permafrost. As a proof of concept, we used the ground temperature data collected from the field sites to recode an ecotype land cover map into a map of mean annual ground temperature ranges at 1 m depth based on analysis and clustering of observed thermal regimes. The map should be useful for decision making with respect to land use and understanding how the landscape might change under future climate scenarios.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 2
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    Presence of rapidly degrading permafrost plateaus in south-central Alaska (2016)
    Copernicus
    In:  EPIC3The Cryosphere, Copernicus, 10(6), pp. 2673-2692, ISSN: 1994-0424
    Details
    Publication Date: 2016-11-16
    Description: Permafrost presence is determined by a complex interaction of climatic, topographic, and ecological conditions operating over long time scales. In particular, vegetation and organic layer characteristics may act to protect permafrost in regions with a mean annual air temperature (MAAT) above 0°C. In this study, we document the presence of residual permafrost plateaus in the western Kenai Peninsula lowlands of south-central Alaska, a region with a MAAT of 1.5+/-1 °C (1981–2010). Continuous ground temperature measurements between 16 September 2012 and 15 September 2015, using calibrated thermistor strings, documented the presence of warm permafrost (-0.04 to -0.08 °C). Field measurements (probing) on several plateau features during the fall of 2015 showed that the depth to the permafrost table averaged 1.48m but at some locations was as shallow as 0.53 m. Late winter surveys (augering, coring, and GPR) in 2016 showed that the average seasonally frozen ground thickness was 0.45 m, overlying a talik above the permafrost table. Measured permafrost thickness ranged from 0.33 to 〉6.90 m. Manual interpretation of historic aerial photography acquired in 1950 indicates that residual permafrost plateaus covered 920 ha as mapped across portions of four wetland complexes encompassing 4810 ha. However, between 1950 and ca. 2010, permafrost plateau extent decreased by 60.0 %, with lateral feature degradation accounting for 85.0% of the reduction in area. Permafrost loss on the Kenai Peninsula is likely associated with a warming climate, wildfires that remove the protective forest and organic layer cover, groundwater flow at depth, and lateral heat transfer from wetland surface waters in the summer. Better understanding the resilience and vulnerability of ecosystem-protected permafrost is critical for mapping and predicting future permafrost extent and degradation across all permafrost regions that are currently warming. Further work should focus on reconstructing permafrost history in south-central Alaska as well as additional contemporary observations of these ecosystem-protected permafrost sites south of the regions with relatively stable permafrost.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 3
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    Reddish Metagranites from the Gennargentu Igneous Complex (Sardinia, Italy): insight into metasomatism induced by magma mingling (2015)
    Oxford University Press
    Details
    Publication Date: 2017-04-04
    Description: The mineralogy of thermometamorphic granites is relatively simple, making it possible to track the spatial distribution of chemical and mineralogical variations in these rocks and investigate the processes that underpin these metamorphic reactions.We have undertaken a detailed investigation of metagranites from the contact aureole that fringes a quartz diorite intrusion of Late Permian age, emplaced into Carboniferous peraluminous granites of the Gennargentu Igneous Complex (Sardinia, Italy). New data are presented including the petrography of metagranites within a 500 m zone adjacent to the quartz diorite intrusion, the compositions of minerals and bulk-rocks, and the oxygen isotope compositions of separated minerals. We have used these data to assess the mobility of elements, expressed as oxide, in the aureole, and the physical conditions of fluid-assisted thermometamorphism. Modal variations and the oscillatory zoning of plagioclase demonstrate that the shallow (P 200MPa) quartz diorite intrusion was emplaced through a number of magmatic injections.The border zone of the quartz diorite intrusion presents evidence of two main processes: hybridization between andesite and rhyolite magmas and volatile saturation of the mingled magma. Modal differences in the contact zone with respect to the protolith (i.e. peraluminous granite), variations in mineral composition, temperature constraints and K2O, Na2O, SiO2 and Al2O3 indicate that a relatively large volume of the host granite (up to 400 m from the contact) was metasomatized by high-temperature (650^3508C) fluids derived from the mingled zone of the quartz diorite intrusion. In detail, the metasomatic K2O-rich fluid reacted with albite to form K-feldspar, and triggered the recrystallization of quartz and plagioclase to higher calcium concentrations. The progressive increase in the MgO/(MgOþFeO) of chlorite closer to the contact indicates that this phase also recrystallized. The iron released during chlorite recrystallization was buffered by hematite formation in the pores of metasomatic K-feldspar. The Gennargentu metagranites provide evidence that metasomatic fluids can play a major role in driving metamorphic reactions in contact aureoles. For instance, the expected increase of Ca in plagioclase owing to thermal equilibration was not achieved in the high-T zone of the aureole because of fluid-assisted removal of cations.We conclude that caution should be taken when interpreting the processes that underpin contact metamorphism in terms of thermally driven, ionic diffusion alone, because the role of fluids may be significant, if not overwhelming, in the domains closest to the magmatic source.
    Description: Published
    Description: 839-859
    Description: 3V. Dinamiche e scenari eruttivi
    Description: JCR Journal
    Description: restricted
    Keywords: contact metamorphism ; metasomatism ; red metagranites ; oxygen isotopes ; Gennargentu Igneous Complex ; 04. Solid Earth::04.04. Geology::04.04.05. Mineralogy and petrology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 4
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    Reply to ‘Comments on the paper “Are the source models of the M 7.1 1908 Messina Straits earthquake reliable? Insights from a novel inversion and sensitivity analysis of levelling data” by Aloisi et al. (2012)’ (2015)
    Oxford University Press
    Details
    Publication Date: 2017-04-04
    Description: We reply to the comments of De Natale and Pino (2013) on the paper “Are the source models of the M 7.1 1908 Messina Straits earthquake reliable? Insights from a novel inversion and sensitivity analysis of levelling data” by Aloisi et al. (2012). We entirely reject their speculative comments and confirm our viewpoint about the impossibility of discriminating between the two oppositely dipping fault models on the basis of the levelling data alone; we state again that their role as a keystone for modellers is untenable. The comment of De Natale and Pino (2013) are welcomed insofar they give us the possibility to improve our previous analysis, and to criticize the mainstream hypothesis favoring to a low-angle East dipping fault in the Sicilian side of the Messina Straits as responsible of the 1908 destructive earthquake.
    Description: Published
    Description: 1403–1409
    Description: 2T. Tettonica attiva
    Description: JCR Journal
    Description: restricted
    Keywords: Transient deformation ; Earthquake dynamics ; Earthquake source observations ; 04. Solid Earth::04.03. Geodesy::04.03.01. Crustal deformations ; 04. Solid Earth::04.06. Seismology::04.06.01. Earthquake faults: properties and evolution ; 04. Solid Earth::04.06. Seismology::04.06.03. Earthquake source and dynamics ; 04. Solid Earth::04.06. Seismology::04.06.04. Ground motion
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 5
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    Radon transport: laboratory and model study (2015)
    Oxford University Press
    Details
    Publication Date: 2017-04-04
    Description: In order to exploit radon profiles for geophysical purposes and also to estimate its entry indoors, it is necessary to study its transport through porous soils. The great number of involved parameters and processes affecting the emanation of radon from the soil grains and its transport in the source medium has led to many theoretical and/or laboratory studies. The authors report the first results of a laboratory study carried out at the Radioactivity Laboratory of the Department of Physics and Astronomy (University of Catania) by means of a facility for measuring radon concentrations in the sample pores at various depths under well-defined and controlled conditions of physical parameters. In particular, radon concentration vertical profiles extracted in low-moisture samples for different advective fluxes and temperatures were compared with expected concentrations, according to a three-phase transport model developed by Andersen (Risø National Laboratory, Denmark), showing, in general, a good agreement between measurements and model calculations.
    Description: Published
    Description: 575-581
    Description: 4V. Vulcani e ambiente
    Description: JCR Journal
    Description: reserved
    Keywords: Radon ; profile ; geophysic ; porous ; 01. Atmosphere::01.01. Atmosphere::01.01.05. Radiation
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 6
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    The new release of the Italian contemporary stress map (2016)
    Oxford University Press
    Details
    Publication Date: 2017-04-04
    Description: We provide an updated present-day stress map for the Italian territory. Following the World Stress Map (WSM) Project guidelines, we list the different stress indicators, explaining the criteria used to select data. We discuss the data, which will also be included in the 2016 release of the WSM, highlighting the areas for which we have added stress information. Our map displays the minimum horizontal stress orientations inferred from crustal stress indicators down to 40 km depth using data of A–C quality, updated for earthquakes until December 2015. We have completely reviewed all data, and the data set now contains 855 entries, in contrast to the previous 715. The number of data with A–C quality of 630 corresponds to an increase of 26 per cent relative to the previous data set. In particular, the new data set contains the results of the analysis of borehole breakouts, critically reviewed data from earthquake focal mechanisms, data concerning active faults, formal inversions of focal mechanisms of seismic sequences or of restricted areas and one stress determination from overcoring. The new data set defines the stress field in areas not well covered by the previous data: the region north to the Po Plain and the central Adriatic sea, both characterized by a thrust- and strike-faulting regime, the northern Sicilian belt with a prevailing normal-faulting regime, and the Ionian sea with a strike-slip regime.
    Description: Published
    Description: 1525-1531
    Description: 2T. Tettonica attiva
    Description: JCR Journal
    Description: restricted
    Keywords: Seismicity and tectonics ; Dynamics: seismotectonics ; Crustal structure ; Europe ; 04. Solid Earth::04.07. Tectonophysics::04.07.05. Stress
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 7
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    Revealing the hidden faults in the SE flank of Mt. Etna using radon in-soil gas measurement (2016)
    Oxford University Press
    Details
    Publication Date: 2017-04-04
    Description: Although there are many methods for investigating tectonic structures, many faults remain hidden, and they can endanger the life and property of people living along them. The slopes of volcanoes are covered with such hidden faults, near which strong earthquakes and gas releases can appear. Revealing hidden faults can therefore contribute significantly to the protection of people living in volcanic areas. In the study, seven different techniques were used for making measurements of in-soil radon concentrations in order to search for hidden faults on the SE flank of the Mt. Etna volcano. These reported methods had previously been proved to be useful tools for investigating fault structures. The main aim of the experiment presented here was to evaluate the usability of these methods in the geological conditions of the Mt. Etna region, and to find the best place for continual radon monitoring using a permanent station in the near future.
    Description: Published
    Description: 70-73
    Description: 5V. Sorveglianza vulcanica ed emergenze
    Description: JCR Journal
    Description: restricted
    Keywords: Mt. Etna ; soil gas ; hidden faults ; radon ; 04. Solid Earth::04.02. Exploration geophysics::04.02.01. Geochemical exploration
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 8
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    Presence of rapidly degrading permafrost plateaus in southcentral Alaska (2016)
    Copernicus
    In:  EPIC3The Cryosphere Discussions, Copernicus
    Details
    Publication Date: 2016-05-26
    Description: Permafrost presence is determined by a complex interaction of climatic, topographic, and ecological conditions operating over long time scales. In particular, vegetation and organic layer characteristics may act to protect permafrost in regions with a mean annual air temperature (MAAT) above 0 °C. In this study, we document the presence of residual permafrost plateaus on the western Kenai Peninsula lowlands of southcentral Alaska, a region with a MAAT of 1.5 ± 1 °C (1981 to 2010). Continuous ground temperature measurements between 16 September 2012 and 15 September 2015, using calibrated thermistor strings, documented the presence of warm permafrost (−0.04 to −0.08 °C). Field measurements (probing) on several plateau features during the fall of 2015 showed that the depth to the permafrost table averaged 1.48 m but was as shallow as 0.53 m. Late winter surveys (drilling, coring, and GPR) in 2016 showed that the average seasonally frozen ground thickness was 0.45 m, overlying a talik above the permafrost table. Measured permafrost thickness ranged from 0.33 to 〉 6.90 m. Manual interpretation of historic aerial photography acquired in 1950 indicates that residual permafrost plateaus covered 920 ha as mapped across portions of four wetland complexes encompassing 4810 ha. However, between 1950 and ca. 2010, permafrost plateau extent decreased by 60 %, with lateral feature degradation accounting for 85 % of the reduction in area. Permafrost loss on the Kenai Peninsula is likely associated with a warming climate, wildfires that remove the protective forest and organic layer cover, groundwater flow at depth, and lateral heat transfer from wetland surface waters in the summer. Better understanding the resilience and vulnerability of ecosystem-protected permafrost is critical for mapping and predicting future permafrost extent and degradation across all permafrost regions that are currently warming. Further work should focus on reconstructing permafrost history in southcentral Alaska as well as additional contemporary observations of these ecosystem-protected permafrost sites lying south of the regions with relatively stable permafrost.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , notRev
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  • 9
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    On the occurrence of annual layers in Dome Fuji ice core early Holocene ice (2015)
    Copernicus
    In:  EPIC3Climate of the Past, Copernicus, 11(9), pp. 1127-1137, ISSN: 1814-9332
    Details
    Publication Date: 2015-12-22
    Description: Whereas ice cores from high-accumulation sites in coastal Antarctica clearly demonstrate annual layering, it is debated whether a seasonal signal is also preserved in ice cores from lower-accumulation sites further inland and particularly on the East Antarctic Plateau. In this study, we examine 5 m of early Holocene ice from the Dome Fuji (DF) ice core at a high temporal resolution by continuous flow analysis. The ice was continuously analysed for concentrations of dust, sodium, ammonium, liquid conductivity, and water isotopic composition. Furthermore, a dielectric profiling was performed on the solid ice. In most of the analysed ice, the multi-parameter impurity data set appears to resolve the seasonal variability although the identification of annual layers is not always unambiguous. The study thus provides information on the snow accumulation process in central East Antarctica. A layer counting based on the same principles as those previously applied to the NGRIP (North Greenland Ice core Project) and the Antarctic EPICA (European Project for Ice Coring in Antarctica) Dronning Maud Land (EDML) ice cores leads to a mean annual layer thickness for the DF ice of 3.0 ± 0.3 cm that compares well to existing estimates. The measured DF section is linked to the EDML ice core through a characteristic pattern of three significant acidity peaks that are present in both cores. The corresponding section of the EDML ice core has recently been dated by annual layer counting and the number of years identified independently in the two cores agree within error estimates. We therefore conclude that, to first order, the annual signal is preserved in this section of the DF core. This case study demonstrates the feasibility of determining annually deposited strata on the central East Antarctic Plateau. It also opens the possibility of resolving annual layers in the Eemian section of Antarctic ice cores where the accumulation is estimated to have been greater than in the Holocene. © Author(s) 2015.
    Repository Name: EPIC Alfred Wegener Institut
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  • 10
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    9. Nutrition and digestion (2015)
    Oxford University Press
    In:  EPIC3The Natural History of Crustacea, Physiology (Vol. 4), New York, Oxford University Press, 35 p., pp. 285-319, ISBN: 9780199832415
    Details
    Publication Date: 2015-03-23
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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  • 11
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    Verification of the multi-layer SNOWPACK model with different water transport schemes (2015)
    Copernicus
    In:  EPIC3The Cryosphere, Copernicus, 9, pp. 2271-2293
    Details
    Publication Date: 2015-12-14
    Description: The widely used detailed SNOWPACK model has undergone constant development over the years. A notable recent extension is the introduction of a Richards equation (RE) solver as an alternative for the bucket-type approach for describing water transport in the snow and soil layers. In addition, continuous updates of snow settling and new snow density parameterizations have changed model behavior. This study presents a detailed evaluation of model performance against a comprehensive multiyear data set from Weissfluhjoch near Davos, Switzerland. The data set is collected by automatic meteorological and snowpack measurements and manual snow profiles. During the main winter season, snow height (RMSE: 〈 4.2 cm), snow water equivalent (SWE, RMSE: 〈 40 mm w.e.), snow temperature distributions (typical deviation with measurements: 〈 1.0 °C) and snow density (typical deviation with observations: 〈 50 kg m−3) as well as their temporal evolution are well simulated in the model and the influence of the two water transport schemes is small. The RE approach reproduces internal differences over capillary barriers but fails to predict enough grain growth since the growth routines have been calibrated using the bucket scheme in the original SNOWPACK model. However, the agreement in both density and grain size is sufficient to parameterize the hydraulic properties successfully. In the melt season, a pronounced underestimation of typically 200 mm w.e. in SWE is found. The discrepancies between the simulations and the field data are generally larger than the differences between the two water transport schemes. Nevertheless, the detailed comparison of the internal snowpack structure shows that the timing of internal temperature and water dynamics is adequately and better represented with the new RE approach when compared to the conventional bucket scheme. On the contrary, the progress of the meltwater front in the snowpack as detected by radar and the temporal evolution of the vertical distribution of melt forms in manually observed snow profiles do not support this conclusion. This discrepancy suggests that the implementation of RE partly mimics preferential flow effects.
    Repository Name: EPIC Alfred Wegener Institut
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  • 12
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    State dependency of the equilibrium climate sensitivity during the last 5 million years (2015)
    Copernicus
    In:  EPIC3EGU General Assembly 2015, Vienna, Austria, 2015-04-12-2015-04-17Geophysical Research Abstracts Vol. 17, EGU2015-4520, 2015, Copernicus
    Details
    Publication Date: 2015-04-20
    Description: A still open question is how equilibrium warming in response to increasing radiative forcing (equilibrium climate sensitivity S) is depending on background climate. We here bring paleo-data based evidence on the state-dependency of S by using CO2 proxy data together with model-based reconstruction of land ice albedo over the last 5 million years. We find that the land-ice albedo forcing depends non-linearly on the background climate, while any non-linearity of CO2 radiative forcings depends on the CO2 data set used. Over the last 2 million years the combined S_[CO2,LI] from CO2 and land-ice albedo forcing is state-dependent and during interglacials at least twice as high as during glacials, thus CO2 doubling leads to an interglacial warming of 5 K. In the Pliocene data uncertainties prevents a well-supported calculation, but our analysis suggests that S_[CO2,LI] during a land-ice free northern hemisphere was smaller than during interglacials of the Pleistocene.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Conference , notRev
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  • 13
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    Stable isotope and fatty acid markers in plankton assemblages of a saline lake: seasonal trends and future scenario (2015)
    Oxford University Press
    In:  EPIC3Journal of Plankton Research, Oxford University Press, 37(3), pp. 584-595, ISSN: 0142-7873
    Details
    Publication Date: 2015-08-22
    Description: Plankton fractions from a saline lake in Argentina were studied using a combined trophic marker approach. A strong seasonality of biomarkers was characteristic for the different fractions, particularly the variations in the 18:4(n 2 3) and 20:4(n 2 3) fatty acids and the d13C values. The primary production in the lake was mainly driven by diatoms, reflected by the close relation of d13C, chlorophyll a and diatom fatty acid markers. The combined approach of d13C and 20:4(n 2 3) enabled processes in the lipid metabolism of the copepod Boeckella poopoensis to be inferred. The polyunsaturated fatty acid 22:6(n 2 3) and the d15N separated the trophic levels in this food web with copepods at higher trophic level. Nutritional stress and omnivory of B. poopoensis partially explained the d15N variations in mesozooplankton. The d15N signature was probably driven by cyanobacteria in the microplankton and by microbial processes in the nanoplankton fraction. Warmer temperatures may favour the saturation of microalgae fatty acids and the abundance of plankton groups richer in saturated fatty acids. The tendency to unsaturation in mesozooplankton at colder temperatures was probably influenced by diet and metabolic requirements. Future temperature increase and eutrophication-like processes may increase the importance of cyanobacterial and bacterial markers under climate change scenarios.
    Repository Name: EPIC Alfred Wegener Institut
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  • 14
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    Thermal processes of thermokarst lakes in the continuous permafrost zone of northern Siberia – observations and modeling (Lena River Delta, Siberia) (2015)
    Copernicus
    In:  EPIC3Biogeosciences, Copernicus, 12(20), pp. 5941-5965, ISSN: 1726-4189
    Details
    Publication Date: 2021-07-19
    Description: Thermokarst lakes are typical features of the northern permafrost ecosystems, and play an important role in the thermal exchange between atmosphere and subsurface. The objective of this study is to describe the main thermal processes of the lakes and to quantify the heat exchange with the underlying sediments. The thermal regimes of five lakes located within the continuous permafrost zone of northern Siberia (Lena River Delta) were investigated using hourly water temperature and water level records covering a 3-year period (2009–2012), together with bathymetric survey data. The lakes included thermokarst lakes located on Holocene river terraces that may be connected to Lena River water during spring flooding, and a thermokarst lake located on deposits of the Pleistocene Ice Complex. Lakes were covered by ice up to 2 m thick that persisted for more than 7 months of the year, from October until about mid-June. Lake-bottom temperatures increased at the start of the ice-covered period due to upward-directed heat flux from the underlying thawed sediment. Prior to ice break-up, solar radiation effectively warmed the water beneath the ice cover and induced convective mixing. Ice break-up started at the beginning of June and lasted until the middle or end of June. Mixing occurred within the entire water column from the start of ice break-up and continued during the ice-free periods, as confirmed by the Wedderburn numbers, a quantitative measure of the balance between wind mixing and stratification that is important for describing the biogeochemical cycles of lakes. The lake thermal regime was modeled numerically using the FLake model. The model demonstrated good agreement with observations with regard to the mean lake temperature, with a good reproduction of the summer stratification during the ice-free period, but poor agreement during the ice-covered period. Modeled sensitivity to lake depth demonstrated that lakes in this climatic zone with mean depths 〉 5 m develop continuous stratification in summer for at least 1 month. The modeled vertical heat flux across the bottom sediment tends towards an annual mean of zero, with maximum downward fluxes of about 5 W m−2 in summer and with heat released back into the water column at a rate of less than 1 W m−2 during the ice-covered period. The lakes are shown to be efficient heat absorbers and effectively distribute the heat through mixing. Monthly bottom water temperatures during the ice-free period range up to 15 °C and are therefore higher than the associated monthly air or ground temperatures in the surrounding frozen permafrost landscape. The investigated lakes remain unfrozen at depth, with mean annual lake-bottom temperatures of between 2.7 and 4 °C.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
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  • 15
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    Effects of high CO2 and warming on a Baltic Sea microzooplankton community (2016)
    Oxford University Press
    In:  EPIC3ICES Journal of Marine Science, Oxford University Press, 73, pp. 772-782, ISSN: 1054-3139
    Details
    Publication Date: 2016-11-30
    Description: Global warming and ocean acidification are among the most important stressors for aquatic ecosystems in the future. To investigate their direct and indirect effects on a near-natural plankton community, a multiple-stressor approach is needed. Hence, we set up mesocosms in a full-factorial design to study the effects of both warming and high CO2 on a Baltic Sea autumn plankton community, concentrating on the impacts on microzooplankton (MZP). MZP abundance, biomass, and species composition were analysed over the course of the experiment. We observed that warming led to a reduced time-lag between the phytoplankton bloom and an MZP biomass maximum. MZP showed a significantly higher growth rate and an earlier biomass peak in the warm treatments while the biomass maximum was not affected. Increased pCO2 did not result in any significant effects on MZP biomass, growth rate, or species composition irrespective of the temperature, nor did we observe any significant interactions between CO2 and temperature. We attribute this to the high tolerance of this estuarine plankton community to fluctuations in pCO2, often resulting in CO2 concentrations higher than the predicted end-of-century concentration for open oceans. In contrast, warming can be expected to directly affect MZP and strengthen its coupling with phytoplankton by enhancing its grazing pressure.
    Repository Name: EPIC Alfred Wegener Institut
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  • 16
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    Seismic velocities within the sedimentary succession of the Canada Basin and southern Alpha-Mendeleev Ridge, Arctic Ocean : evidence for accelerated porosity reduction? (2016)
    Oxford University Press
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Crown Copyright, 2015. This article is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 204 (2016): 1-20, doi:10.1093/gji/ggv416.
    Description: The Canada Basin and the southern Alpha-Mendeleev ridge complex underlie a significant proportion of the Arctic Ocean, but the geology of this undrilled and mostly ice-covered frontier is poorly known. New information is encoded in seismic wide-angle reflections and refractions recorded with expendable sonobuoys between 2007 and 2011. Velocity–depth samples within the sedimentary succession are extracted from published analyses for 142 of these records obtained at irregularly spaced stations across an area of 1.9E + 06 km2. The samples are modelled at regional, subregional and station-specific scales using an exponential function of inverse velocity versus depth with regionally representative parameters determined through numerical regression. With this approach, smooth, non-oscillatory velocity–depth profiles can be generated for any desired location in the study area, even where the measurement density is low. Practical application is demonstrated with a map of sedimentary thickness, derived from seismic reflection horizons interpreted in the time domain and depth converted using the velocity–depth profiles for each seismic trace. A thickness of 12–13 km is present beneath both the upper Mackenzie fan and the middle slope off of Alaska, but the sedimentary prism thins more gradually outboard of the latter region. Mapping of the observed-to-predicted velocities reveals coherent geospatial trends associated with five subregions: the Mackenzie fan; the continental slopes beyond the Mackenzie fan; the abyssal plain; the southwestern Canada Basin; and, the Alpha-Mendeleev magnetic domain. Comparison of the subregional velocity–depth models with published borehole data, and interpretation of the station-specific best-fitting model parameters, suggests that sandstone is not a predominant lithology in any of the five subregions. However, the bulk sand-to-shale ratio likely increases towards the Mackenzie fan, and the model for this subregion compares favourably with borehole data for Miocene turbidites in the eastern Gulf of Mexico. The station-specific results also indicate that Quaternary sediments coarsen towards the Beaufort-Mackenzie and Banks Island margins in a manner that is consistent with the variable history of Laurentide Ice Sheet advance documented for these margins. Lithological factors do not fully account for the elevated velocity–depth trends that are associated with the southwestern Canada Basin and the Alpha-Mendeleev magnetic domain. Accelerated porosity reduction due to elevated palaeo-heat flow is inferred for these regions, which may be related to the underlying crustal types or possibly volcanic intrusion of the sedimentary succession. Beyond exploring the variation of an important physical property in the Arctic Ocean basin, this study provides comparative reference for global studies of seismic velocity, burial history, sedimentary compaction, seismic inversion and overpressure prediction, particularly in mudrock-dominated successions.
    Keywords: Numerical approximations and analysis ; Spatial analysis ; Controlled source seismology ; Acoustic properties ; Sedimentary basin processes ; Large igneous provinces ; Crustal structure ; Arctic region
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    A note about Gaussian statistics on a sphere (2015)
    Oxford University Press
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author, 2015. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 203 (2015): 893-895, doi:10.1093/gji/ggv324.
    Description: The statistics of directional data on a sphere can be modelled either using the Fisher distribution that is conditioned on the magnitude being unity, in which case the sample space is confined to the unit sphere, or using the latitude–longitude marginal distribution derived from a trivariate Gaussian model that places no constraint on the magnitude. These two distributions are derived from first principles and compared. The Fisher distribution more closely approximates the uniform distribution on a sphere for a given small value of the concentration parameter, while the latitude–longitude marginal distribution is always slightly larger than the Fisher distribution at small off-axis angles for large values of the concentration parameter. Asymptotic analysis shows that the two distributions only become equivalent in the limit of large concentration parameter and very small off-axis angle.
    Keywords: Numerical approximations and analysis ; Probability distributions ; Marine magnetics and palaeomagnetics
    Repository Name: Woods Hole Open Access Server
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  • 18
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    Predicting RAD-seq marker numbers across the eukaryotic tree of life (2016)
    Oxford University Press
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Genome Biology and Evolution 7 (2015): 3207-3225, doi:10.1093/gbe/evv210.
    Description: High-throughput sequencing of reduced representation libraries obtained through digestion with restriction enzymes—generically known as restriction site associated DNA sequencing (RAD-seq)—is a common strategy to generate genome-wide genotypic and sequence data from eukaryotes. A critical design element of any RAD-seq study is knowledge of the approximate number of genetic markers that can be obtained for a taxon using different restriction enzymes, as this number determines the scope of a project, and ultimately defines its success. This number can only be directly determined if a reference genome sequence is available, or it can be estimated if the genome size and restriction recognition sequence probabilities are known. However, both scenarios are uncommon for nonmodel species. Here, we performed systematic in silico surveys of recognition sequences, for diverse and commonly used type II restriction enzymes across the eukaryotic tree of life. Our observations reveal that recognition sequence frequencies for a given restriction enzyme are strikingly variable among broad eukaryotic taxonomic groups, being largely determined by phylogenetic relatedness. We demonstrate that genome sizes can be predicted from cleavage frequency data obtained with restriction enzymes targeting “neutral” elements. Models based on genomic compositions are also effective tools to accurately calculate probabilities of recognition sequences across taxa, and can be applied to species for which reduced representation data are available (including transcriptomes and neutral RAD-seq data sets). The analytical pipeline developed in this study, PredRAD (https://github.com/phrh/PredRAD), and the resulting databases constitute valuable resources that will help guide the design of any study using RAD-seq or related methods.
    Description: This research was supported by the Office of Ocean Exploration and Research of the National Oceanic and Atmospheric Administration (NA09OAR4320129 to T.S.); the Division of Ocean Sciences of the National Science Foundation (OCE-1131620 to T.S.); the Astrobiology Science and Technology for Exploring Planets program of the National Aeronautics and Space Administration (NNX09AB76G to T.S.); and the Academic Programs Office (Ocean Ventures Fund to S.H.), the Ocean Exploration Institute (Fellowship support to T.M.S.), and the Ocean Life Institute of the Woods Hole Oceanographic Institution (internal grant to T.M.S. and S.H.).
    Keywords: RAD-seq ; Reduced representation sequencing ; PredRAD ; Experimental design ; Genome size prediction ; Restriction recognition sequence probability
    Repository Name: Woods Hole Open Access Server
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  • 19
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    Distribution of melt along the East Pacific Rise from 9°30′ to 10°N from an amplitude variation with angle of incidence (AVA) technique (2015)
    Oxford University Press
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2015. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 203 (2015): 1-21, doi:10.1093/gji/ggv251.
    Description: We examine along-axis variations in melt content of the axial magma lens (AML) beneath the fast-spreading East Pacific Rise (EPR) using an amplitude variation with angle of incidence (AVA) crossplotting method applied to multichannel seismic data acquired in 2008. The AVA crossplotting method, which has been developed for and, so far, applied for hydrocarbon prospection in sediments, is for the first time applied to a hardrock environment. We focus our analysis on 2-D data collected along the EPR axis from 9°29.8′N to 9°58.4′N, a region which encompasses the sites of two well-documented submarine volcanic eruptions (1991–1992 and 2005–2006). AVA crossplotting is performed for a ∼53 km length of the EPR spanning nine individual AML segments (ranging in length from ∼3.2 to 8.5 km) previously identified from the geometry of the AML and disruptions in continuity. Our detailed analyses conducted at 62.5 m interval show that within most of the analysed segments melt content varies at spatial scales much smaller (a few hundred of metres) than the length of the fine-scale AML segments, suggesting high heterogeneity in melt concentration. At the time of our survey, about 2 yr after the eruption, our results indicate that the three AML segments that directly underlie the 2005–2006 lava flow are on average mostly molten. However, detailed analysis at finer-scale intervals for these three segments reveals AML pockets (from 〉62.5 to 812.5 m long) with a low melt fraction. The longest such mushy section is centred beneath the main eruption site at ∼9°50.4′N, possibly reflecting a region of primary melt drainage during the 2005–2006 event. The complex geometry of fluid flow pathways within the crust above the AML and the different response times of fluid flow and venting to eruption and magma reservoir replenishment may contribute to the poor spatial correlation between incidence of hydrothermal vents and presence of highly molten AML. The presented results are an important step forward in our ability to resolve small-scale characteristics of the AML and recommend the AVA crossplotting as a tool for examining mid-ocean ridge magma-systems elsewhere.
    Description: This research was supported by NSF awards OCE0327872 to J.C.M. and S.M.C., OCE-0327885 to J.P.C., and OCE0624401 to M.R.N.
    Keywords: Mid-ocean ridge processes ; Submarine tectonics and volcanism ; Crustal structure ; Physics of magma and magma bodies
    Repository Name: Woods Hole Open Access Server
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    An efficient system for selectively altering genetic information within mRNAs (2016)
    Oxford University Press
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nucleic Acids Research 44 (2016): e157, doi:10.1093/nar/gkw738.
    Description: Site-directed RNA editing (SDRE) is a strategy to precisely alter genetic information within mRNAs. By linking the catalytic domain of the RNA editing enzyme ADAR to an antisense guide RNA, specific adenosines can be converted to inosines, biological mimics for guanosine. Previously, we showed that a genetically encoded iteration of SDRE could target adenosines expressed in human cells, but not efficiently. Here we developed a reporter assay to quantify editing, and used it to improve our strategy. By enhancing the linkage between ADAR's catalytic domain and the guide RNA, and by introducing a mutation in the catalytic domain, the efficiency of converting a UAG premature termination codon (PTC) to tryptophan (UGG) was improved from ∼11% to ∼70%. Other PTCs were edited, but less efficiently. Numerous off-target edits were identified in the targeted mRNA, but not in randomly selected endogenous messages. Off-target edits could be eliminated by reducing the amount of guide RNA with a reduction in on-target editing. The catalytic rate of SDRE was compared with those for human ADARs on various substrates and found to be within an order of magnitude of most. These data underscore the promise of site-directed RNA editing as a therapeutic or experimental tool.
    Description: National Institutes of Health [1R0111223855, 1R01NS64259]; Cystic Fibrosis Foundation Therapeutics [Rosent14XXO]; Infrastructural support was provided by the National Institutes of Health [NIGMS 1P20GM103642, NIMHD 8G12-MD007600]; National Science Foundation [DBI 0115825, DBI 1337284]; Department of Defense [52680-RT-ISP].
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    Identifying deformation mechanisms in the NEEM ice core using EBSD measurements (2015)
    Copernicus
    In:  EPIC3EGU General Assembly 2015, Vienna, 2015-04-13-2015-04-17Copernicus
    Details
    Publication Date: 2015-05-11
    Description: Deformation of ice in continental sized ice sheets determines the flow behavior of ice towards the sea. Basal dislocation glide is assumed to be the dominant deformation mechanism in the creep deformation of natural ice, but non-basal glide is active as well. Knowledge of what types of deformation mechanisms are active in polar ice is critical in predicting the response of ice sheets in future warmer climates and its contribution to sea level rise, because the activity of deformation mechanisms depends critically on deformation conditions (such as temperature) as well as on the material properties (such as grain size). One of the methods to study the deformation mechanisms in natural materials is Electron Backscattered Diffraction (EBSD). We obtained ca. 50 EBSD maps of five different depths from a Greenlandic ice core (NEEM). The step size varied between 8 and 25 micron depending on the size of the deformation features. The size of the maps varied from 2000 to 10000 grid point. Indexing rates were up to 95%, partially by saving and reanalyzing the EBSP patterns. With this method we can characterize subgrain boundaries and determine the lattice rotation configurations of each individual subgrain. Combining these observations with arrangement/geometry of subgrain boundaries the dislocation types can be determined, which form these boundaries. Three main types of subgrain boundaries have been recognized in Antarctic (EDML) ice core (Weikusat et al. 2010, 2011). Here, we present the first results obtained from EBSD measurements performed on the NEEM ice core samples from the last glacial period, focusing on the relevance of dislocation activity of the possible slip systems. Preliminary results show that all three subgrain types, recognized in the EDML core, occur in the NEEM samples. In addition to the classical boundaries made up of basal dislocations, subgrain boundaries made of non-basal dislocations are also common.
    Repository Name: EPIC Alfred Wegener Institut
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    Computational analysis of dynamic recrystallization of ice aggregates during viscoplastic deformation (2015)
    Copernicus
    In:  EPIC3EGU General Assembly 2015, Vienna, 2015-04-13-2015-04-17Vienna, Copernicus
    Details
    Publication Date: 2015-05-11
    Description: Ice is a common mineral at the Earth’s surface. How much ice is stored in the Greenland and Antarctic ice sheets depends on its mechanical properties. Therefore properties of ice directly impact on human society through its role in controlling sea level. The bulk behaviour of large ice masses is the result of the behaviour of the ensemble of individual ice grains. This is strongly influenced by the viscoplastic anisotropy of these grains and their lattice orientation. Numerical modelling provides a better insight into the mechanics of ice from the micro to the ice sheet scale. We present numerical simulations that predict the microstructural evolution of an aggregate of pure ice grains at different strain rates. We simulate co-axial deformation and dynamic recrystallization up to large strain using a full-field approach. The crystal plasticity code (Lebensohn et al., 2009) is used to calculate the response of a polycrystalline aggregate that deforms by purely dislocation glide, applying a Fast Fourier Transform (FFT). This code is coupled with the ELLE microstructural modelling platform to include intracrystalline recovery, as well as grain boundary migration driven by the reduction of surface and strain energies. The results show a strong effect of recrystallization on the final microstructure, producing larger and more equiaxed grains, with smooth boundaries. This effect does not significantly modify the single-maximum pattern of c-axes that are distributed at a low angle to the shortening direction. However, in experiments with significant recrystallization the a-axes rotate towards the elongation axis at the same time as the c-axes rotate towards the compression axis. If slip systems on prismatic and/or pyramidal planes are active, it is thought that a-axes gradually concentrate with depth (Miyamoto, 2005). The bulk activity of the slip systems is different depending on the relative activity of deformation versus recrystallization: the non-basal slip systems are more active at high strain in experiments with dynamic recrystallization compared to those experiments with low recrystallization activity.
    Repository Name: EPIC Alfred Wegener Institut
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  • 23
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    Numerical modelling of polyphase deformation and recrystallization in polar firn and ice (2015)
    Copernicus
    In:  EPIC3EGU General Assembly 2015, Vienna, 2015-04-13-2015-04-17Copernicus
    Details
    Publication Date: 2015-05-11
    Description: The ice sheets in Greenland and Antarctica contain a significant amount of air within their upper approximately thousand meters and air hydrates below. While this air is still in exchange with the atmosphere in the permeable firn, the gas is entrapped at the firn-ice transition at 60 – 120 m depth. Understanding the dominant deformation mechanisms is essential to interpret paleo-atmosphere records and to allow a more realistic model of ice sheet dynamics. Recent research shows how the presence of air bubbles can significantly influence microdynamical processes such as grain growth and grain boundary migration (Azuma et al., 2012, Roessiger et al., 2014). Therefore, numerical modelling was performed focussing on the mechanical properties of ice with air inclusions and the implications of the presence of bubbles on recrystallisation. The full-field crystal plasticity code of Lebensohn (2001), using a Fast Fourier Transform (FFT), was coupled to the 2D numerical microstructural modelling platform Elle, following the approach by Griera et al. (2013), and used to simulate dynamic recrystallization of pure ice (Montagnat et al., 2013). FFT calculates the viscoplastic response of polycrystalline and polyphase materials that deform by dislocation glide, takes into account the mechanical anisotropy of ice and calculates dislocation densities using the local gradient of the strain-rate field. Incorporating a code for polyphase grain boundary migration driven by surface and internal strain energy reduction, based on the methodology of Becker et al. (2008) and Roessiger et al. (2014), now also enables us to model deformation of ice with air bubbles. The presence of bubbles leads to an increase in strain localization, which reduces the bulk strength of the bubbly ice. In the absence of dynamic recrystallisation, air bubbles quickly collapse at low strains and spherical to elliptical bubble shapes are only maintained when recrystallisation is activated. Our modelling confirms that strain-induced grain boundary migration already occurs in the uppermost levels of ice sheets (Kipfstuhl et al. 2009, Weikusat et al. 2009).
    Repository Name: EPIC Alfred Wegener Institut
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    Raman tomography of natural air hydrates (2015)
    Copernicus
    In:  EPIC3EGU General Assembly 2015, Vienna, Austria, 2015-04-12-2015-04-17Copernicus
    Details
    Publication Date: 2015-05-11
    Description: Ice cores are the only climate archives incorporating paleo-atmosphere as individual gas inclusions, enabling the extraction and analysis of the contained gasses. A firm understanding of the processes involved is mandatory for a reliable interpretation of the gas records. One prominent process is the transition from air bubbles to crystalline air hydrates, which is known to influence, at least temporarily, the gas mixing ratios by diffusion and fractionation. This transition is still not understood completely and the existing theories do not explain the large diversity of observed hydrate morphologies. Raman tomographic measurements using the AWI cryo-Raman system provide 3D reconstructions of air hydrate morphologies. The results show complex growth structures that emphasize the importance of crystallography, microstructure and ice rheology for the hydrate formation process. Accurate hydrate volumes can be calculated from the 3D objects, improving the estimates of total gas contents.
    Repository Name: EPIC Alfred Wegener Institut
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    Non-linear regime shifts in Holocene Asian monsoon variability: potential impacts on cultural change and migratory patterns (2015)
    Copernicus
    In:  EPIC3Climate of the Past, Copernicus, (11), pp. 709-741
    Details
    Publication Date: 2015-05-11
    Description: The Asian monsoon system is an important tipping element in Earth's climate with a large impact on human societies in the past and present. In light of the potentially severe impacts of present and future anthropogenic climate change on Asian hydrology, it is vital to understand the forcing mechanisms of past climatic regime shifts in the Asian monsoon domain. Here we use novel recurrence network analysis techniques for detecting episodes with pronounced non-linear changes in Holocene Asian monsoon dynamics recorded in speleothems from caves distributed throughout the major branches of the Asian monsoon system. A newly developed multi-proxy methodology explicitly considers dating uncertainties with the COPRA (COnstructing Proxy Records from Age models) approach and allows for detection of continental-scale regime shifts in the complexity of monsoon dynamics. Several epochs are characterised by non-linear regime shifts in Asian monsoon variability, including the periods around 8.5–7.9, 5.7–5.0, 4.1–3.7, and 3.0–2.4 ka BP. The timing of these regime shifts is consistent with known episodes of Holocene rapid climate change (RCC) and high-latitude Bond events. Additionally, we observe a previously rarely reported non-linear regime shift around 7.3 ka BP, a timing that matches the typical 1.0–1.5 ky return intervals of Bond events. A detailed review of previously suggested links between Holocene climatic changes in the Asian monsoon domain and the archaeological record indicates that, in addition to previously considered longer-term changes in mean monsoon intensity and other climatic parameters, regime shifts in monsoon complexity might have played an important role as drivers of migration, pronounced cultural changes, and the collapse of ancient human societies.
    Repository Name: EPIC Alfred Wegener Institut
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  • 26
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    Detecting methane ebullition on thermokarst lake ice using high resolution optical aerial imagery (2015)
    Copernicus
    In:  EPIC3Biogeosciences Discussions, Copernicus, 12(10), pp. 7449-7490, ISSN: 1810-6285
    Details
    Publication Date: 2015-05-28
    Description: Thermokarst lakes are important emitters of methane, a potent greenhouse gas. However, accurate estimation of methane flux from thermokarst lakes is difficult due to their remoteness and observational challenges associated with the heterogeneous nature of ebullition (bubbling). We used multi-temporal high-resolution (9–11 cm) aerial images of an interior Alaskan thermokarst lake, Goldstream Lake, acquired 2 and 4 days following freeze-up in 2011 and 2012, respectively, to characterize methane ebullition seeps and to estimate whole-lake ebullition. Bubbles impeded by the lake ice sheet form distinct white patches as a function of bubbling rate vs. time as ice thickens. Our aerial imagery thus captured in a single snapshot the ebullition events that occurred before the image acquisition. Image analysis showed that low-flux A- and B-type seeps are associated with low brightness patches and are statistically distinct from high-flux C-type and Hotspot seeps associated with high brightness patches. Mean whole-lake ebullition based on optical image analysis in combination with bubble-trap flux measurements was estimated to be 174 ± 28 and 216 ± 33 mL gas m−2 d−1 for the years 2011 and 2012, respectively. A large number of seeps demonstrated spatio-temporal stability over our two-year study period. A strong inverse exponential relationship (R2 ≥ 0.79) was found between percent surface area of lake ice covered with bubble patches and distance from the active thermokarst lake margin. Our study shows that optical remote sensing is a powerful tool to map ebullition seeps on lake ice, to identify their relative strength of ebullition and to assess their spatio-temporal variability.
    Repository Name: EPIC Alfred Wegener Institut
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    ENVIRONMENTS and EOL : identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life (2015)
    Oxford University Press
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bioinformatics 31 (2015): 1872-1874, doi:10.1093/bioinformatics/btv045.
    Description: The association of organisms to their environments is a key issue in exploring biodiversity patterns. This knowledge has traditionally been scattered, but textual descriptions of taxa and their habitats are now being consolidated in centralized resources. However, structured annotations are needed to facilitate large-scale analyses. Therefore, we developed ENVIRONMENTS, a fast dictionary-based tagger capable of identifying Environment Ontology (ENVO) terms in text. We evaluate the accuracy of the tagger on a new manually curated corpus of 600 Encyclopedia of Life (EOL) species pages. We use the tagger to associate taxa with environments by tagging EOL text content monthly, and integrate the results into the EOL to disseminate them to a broad audience of users.
    Description: The Encyclopedia Of Life Rubenstein Fellows Program [CRDF EOL-33066-13/E33066], the LifeWatchGreece Research Infrastructure [384676-94/GSRT/ NSRF(C&E)] and the Novo Nordisk Foundation Center for Protein Research [NNF14CC0001].
    Repository Name: Woods Hole Open Access Server
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    The role of elasticity in simulating long-term tectonic extension (2016)
    Oxford University Press
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © Oxford University Press, 2016. This article is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 205 (2016): 728-743, doi:10.1093/gji/ggw044.
    Description: While elasticity is a defining characteristic of the Earth's lithosphere, it is often ignored in numerical models of long-term tectonic processes in favour of a simpler viscoplastic description. Here we assess the consequences of this assumption on a well-studied geodynamic problem: the growth of normal faults at an extensional plate boundary. We conduct 2-D numerical simulations of extension in elastoplastic and viscoplastic layers using a finite difference, particle-in-cell numerical approach. Our models simulate a range of faulted layer thicknesses and extension rates, allowing us to quantify the role of elasticity on three key observables: fault-induced topography, fault rotation, and fault life span. In agreement with earlier studies, simulations carried out in elastoplastic layers produce rate-independent lithospheric flexure accompanied by rapid fault rotation and an inverse relationship between fault life span and faulted layer thickness. By contrast, models carried out with a viscoplastic lithosphere produce results that may qualitatively resemble the elastoplastic case, but depend strongly on the product of extension rate and layer viscosity U × ηL. When this product is high, fault growth initially generates little deformation of the footwall and hanging wall blocks, resulting in unrealistic, rigid block-offset in topography across the fault. This configuration progressively transitions into a regime where topographic decay associated with flexure is fully accommodated within the numerical domain. In addition, high U × ηL favours the sequential growth of multiple short-offset faults as opposed to a large-offset detachment. We interpret these results by comparing them to an analytical model for the fault-induced flexure of a thin viscous plate. The key to understanding the viscoplastic model results lies in the rate-dependence of the flexural wavelength of a viscous plate, and the strain rate dependence of the force increase associated with footwall and hanging wall bending. This behaviour produces unrealistic deformation patterns that can hinder the geological relevance of long-term rifting models that assume a viscoplastic rheology.
    Description: This work was supported by NSF grants OCE-11-54238 (JAO, MDB), EAR-10-10432 (MDB) and OCE-11-55098 (GI), as well as a WHOI Deep Exploration Institute grant and start-up support from the University of Idaho (EM).
    Keywords: Mid-ocean ridge processes ; Continental tectonics: extensional ; Lithospheric flexure ; Mechanics, theory, and modelling
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    Longitudinal progesterone profiles in baleen from female North Atlantic right whales (Eubalaena glacialis) match known calving history (2016)
    Oxford University Press
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Conservation Physiology 4 (2016): cow014, doi:10.1093/conphys/cow014.
    Description: Reproduction of mysticete whales is difficult to monitor, and basic parameters, such as pregnancy rate and inter-calving interval, remain unknown for many populations. We hypothesized that baleen plates (keratinous strips that grow downward from the palate of mysticete whales) might record previous pregnancies, in the form of high-progesterone regions in the sections of baleen that grew while the whale was pregnant. To test this hypothesis, longitudinal baleen progesterone profiles from two adult female North Atlantic right whales (Eubalaena glacialis) that died as a result of ship strike were compared with dates of known pregnancies inferred from calf sightings and post-mortem data. We sampled a full-length baleen plate from each female at 4 cm intervals from base (newest baleen) to tip (oldest baleen), each interval representing ∼60 days of baleen growth, with high-progesterone areas then sampled at 2 or 1 cm intervals. Pulverized baleen powder was assayed for progesterone using enzyme immunoassay. The date of growth of each sampling location on the baleen plate was estimated based on the distance from the base of the plate and baleen growth rates derived from annual cycles of stable isotope ratios. Baleen progesterone profiles from both whales showed dramatic elevations (two orders of magnitude higher than baseline) in areas corresponding to known pregnancies. Baleen hormone analysis shows great potential for estimation of recent reproductive history, inter-calving interval and general reproductive biology in this species and, possibly, in other mysticete whales.
    Description: This work was supported by the Eppley Foundation for Research, the National Oceanographic and Atmospheric Administration Marine Mammal Health and Stranding Program and the Woods Hole Oceanographic Institution Ocean Life Institute.
    Keywords: Baleen ; Cetacea ; Marine mammals ; Pregnancy ; Progesterone ; Reproduction
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    Basal gnathostomes provide unique insights into the evolution of vitamin B12 binders (2015)
    Oxford University Press
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Genome Biology and Evolution 7 (2015): 457-464, doi:10.1093/gbe/evu289.
    Description: The uptake and transport of vitamin B12 (cobalamin; Cbl) in mammals involves a refined system with three evolutionarily related transporters: transcobalamin 1 (Tcn1), transcobalamin 2 (Tcn2), and the gastric intrinsic factor (Gif). Teleosts have a single documented binder with intermediate features to the human counterparts. Consequently, it has been proposed that the expansion of Cbl binders occurred after the separation of Actinopterygians. Here, we demonstrate that the diversification of this gene family took place earlier in gnathostome ancestry. Our data indicates the presence of single copy orthologs of the Sarcopterygii/Tetrapoda duplicates Tcn1 and Gif, and Tcn2, in Chondrichthyes. In addition, a highly divergent Cbl binder was found in the Elasmobranchii. We unveil a complex scenario forged by genome, tandem duplications and lineage-specific gene loss. Our findings suggest that from an ancestral transporter, exhibiting large spectrum and high affinity binding, highly specific Cbl transporters emerged through gene duplication and mutations at the binding pocket.
    Description: This work was funded by the Fundação para a Ciência e a Tecnologia (FCT) project PEst-C/MAR/LA0015/2013. PhD grant SFRH/BD/84238/2012 awarded to M.L-.M. Postdoctoral grant SFRH/BPD/72519/2010 awarded to R.R.
    Keywords: Cobalamin transport ; Genome duplications ; Gnathostomes
    Repository Name: Woods Hole Open Access Server
    Type: Article
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    Ice shelf structure derived from dispersion curve analysis of ambient seismic noise, Ross Ice Shelf, Antarctica (2016)
    Oxford University Press
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2016. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 205 (2016): 785-795, doi:10.1093/gji/ggw036.
    Description: An L-configured, three-component short period seismic array was deployed on the Ross Ice Shelf, Antarctica during November 2014. Polarization analysis of ambient noise data from these stations shows linearly polarized waves for frequency bands between 0.2 and 2 Hz. A spectral peak at about 1.6 Hz is interpreted as the resonance frequency of the water column and is used to estimate the water layer thickness below the ice shelf. The frequency band from 4 to 18 Hz is dominated by Rayleigh and Love waves propagating from the north that, based on daily temporal variations, we conclude were generated by field camp activity. Frequency–slowness plots were calculated using beamforming. Resulting Love and Rayleigh wave dispersion curves were inverted for the shear wave velocity profile within the firn and ice to ∼150 m depth. The derived density profile allows estimation of the pore close-off depth and the firn–air content thickness. Separate inversions of Rayleigh and Love wave dispersion curves give different shear wave velocity profiles within the firn. We attribute this difference to an effective anisotropy due to fine layering. The layered structure of firn, ice, water and the seafloor results in a characteristic dispersion curve below 7 Hz. Forward modelling the observed Rayleigh wave dispersion curves using representative firn, ice, water and sediment structures indicates that Rayleigh waves are observed when wavelengths are long enough to span the distance from the ice shelf surface to the seafloor. The forward modelling shows that analysis of seismic data from an ice shelf provides the possibility of resolving ice shelf thickness, water column thickness and the physical properties of the ice shelf and underlying seafloor using passive-source seismic data.
    Description: PDB, AD and PG were supported by NSF Grant PLR 1246151. RAS was supported by NSF Grant PLR-1246416. DAW, RA and AN were supported under NSF Grants PLR-1142518, 1141916 and 1142126, respectively. PDB also received support from the California Department of Parks and Recreation, Division of Boating and Waterways under contract 11-106-107.
    Keywords: Glaciology ; Surface waves and free oscillations ; Seismic anisotropy ; Antarctica
    Repository Name: Woods Hole Open Access Server
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    Seascapes as a new vernacular for pelagic ocean monitoring, management and conservation (2016)
    Oxford University Press
    Details
    Publication Date: 2022-05-26
    Description: © International Council for the Exploration of the Sea, 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in ICES Journal of Marine Science 73 (2016): 1839-1850, doi: 10.1093/icesjms/fsw086.
    Description: For terrestrial and marine benthic ecologists, landscape ecology provides a framework to address issues of complexity, patchiness, and scale—providing theory and context for ecosystem based management in a changing climate. Marine pelagic ecosystems are likewise changing in response to warming, changing chemistry, and resource exploitation. However, unlike spatial landscapes that migrate slowly with time, pelagic seascapes are embedded in a turbulent, advective ocean. Adaptations from landscape ecology to marine pelagic ecosystem management must consider the nature and scale of biophysical interactions associated with organisms ranging from microbes to whales, a hierarchical organization shaped by physical processes, and our limited capacity to observe and monitor these phenomena across global oceans. High frequency, multiscale, and synoptic characterization of the 4-D variability of seascapes are now available through improved classification methods, a maturing array of satellite remote sensing products, advances in autonomous sampling of multiple levels of biological complexity, and emergence of observational networks. Merging of oceanographic and ecological paradigms will be necessary to observe, manage, and conserve species embedded in a dynamic seascape mosaic, where the boundaries, extent, and location of features change with time.
    Description: This work was supported by NASA grant NNX14AP62A “National Marine Sanctuaries as Sentinel Sites for a Demonstration Marine Biodiversity Observation Network (MBON)” funded under the National Ocean Partnership Program (NOPP RFP NOAA-NOS-IOOS-2014-2003803 in partnership between NOAA, BOEM, and NASA), the NOAA Integrated Ocean Observing System (IOOS) Program Office, and the LenFest Ocean Program.
    Keywords: Biodiversity ; Conservation ; Landscape ; Ocean observations ; Pelagic ; Phytoplankton ; Seascape
    Repository Name: Woods Hole Open Access Server
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    Coastal dynamics and submarine permafrost in shallow water of the central Laptev Sea, East Siberia (2016)
    Copernicus
    In:  EPIC3The Cryosphere, Copernicus, 9(4), pp. 1449-1462, ISSN: 1994-0416
    Details
    Publication Date: 2024-04-29
    Description: Coastal erosion and flooding transform terrestrial landscapes into marine environments. In the Arctic, these processes inundate terrestrial permafrost with seawater and create submarine permafrost. Permafrost begins to warm under marine conditions, which can destabilize the sea floor and may release greenhouse gases. We report on the transition of terrestrial to submarine permafrost at a site where the timing of inundation can be inferred from the rate of coastline retreat. On Muostakh Island in the central Laptev Sea, East Siberia, changes in annual coastline position have been measured for decades and vary highly spatially. We hypothesize that these rates are inversely related to the inclination of the upper surface of submarine ice-bonded permafrost (IBP) based on the consequent duration of inundation with increasing distance from the shoreline. We compared rapidly eroding and stable coastal sections of Muostakh Island and find permafrost-table inclinations, determined using direct current resistivity, of 1 and 5 %, respectively. Determinations of submarine IBP depth from a drilling transect in the early 1980s were compared to resistivity profiles from 2011. Based on borehole observations, the thickness of unfrozen sediment overlying the IBP increased from 0 to 14m below sea level with increasing distance from the shoreline. The geoelectrical profiles showed thickening of the unfrozen sediment overlying ice-bonded permafrost over the 28 years since drilling took place. We use geoelectrical estimates of IBP depth to estimate permafrost degradation rates since inundation. Degradation rates decreased from over 0.4ma-1 following inundation to around 0.1ma-1 at the latest after 60 to 110 years and remained constant at this level as the duration of inundation increased to 250 years. We suggest that long-term rates are lower than these values, as the depth to the IBP increases and thermal and porewater solute concentration gradients over depth decrease. For the study region, recent increases in coastal erosion rate and changes in benthic temperature and salinity regimes are expected to affect the depth to submarine permafrost, leading to coastal regions with shallower IBP.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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    Modelling the ocean site effect on seismic noise body waves (2015)
    Oxford University Press | Wiley-Blackwell
    Details
    Publication Date: 2024-04-05
    Description: Secondary microseismic noise is generated by non-linear interactions between ocean waves at the ocean surface. We present here the theory for computing the site effect of the ocean layer upon body waves generated by noise sources distributed along the ocean surface. By defining the wavefield as the superposition of plane waves, we show that the ocean site effect can be described as the constructive interference of multiply reflected P waves in the ocean that are then converted to either P or SV waves at the ocean–crust interface. We observe that the site effect varies strongly with period and ocean depth, although in a different way for body waves than for Rayleigh waves. We also show that the ocean site effect is stronger for P waves than for S waves. We validate our computation by comparing the theoretical noise body wave sources with the sources inferred from beamforming analysis of the three seismogram components recorded by the Southern California Seismic Network. We use rotated traces for the beamforming analysis, and we show that we clearly detect P waves generated by ocean gravity wave interactions along the track of typhoon Ioke (2006 September). We do not detect the corresponding SV waves, and we demonstrate that this is because their amplitude is too weak.
    Description: Published
    Description: 1096-1106
    Description: 1T. Geodinamica e interno della Terra
    Description: JCR Journal
    Description: restricted
    Keywords: Body waves ; Site effects ; Theoretical Seismology ; 04. Solid Earth::04.06. Seismology::04.06.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Policy ideas and policy learning about 'basic research' in South Korea (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-08
    Description: ‘Basic research’ is based on epistemological and intentional criteria. In terms of science policy, however, these criteria imply contradictory views on investment in ‘basic research’. The former espouses the linear model of innovation and encourages policy-makers concerned with economic problems to expand investment on basic research. However, the latter can collide with the policy norm of policy-makers and discourage investment in ‘basic research’ in an institutional setting where the nation-state prevails over scientists, as in South Korea. Emphasizing policy ideas and policy learning, this paper empirically shows that changes in investment priority and the emergence of new concepts about ‘basic research’ are co-products of a policy paradigm of the linear model and a policy norm of industrial competitiveness in Korea. Specifically, emphasis was placed on the balance between pure and oriented basic research, but moved on to ‘oriented basic research’, ‘basic engineering’, and to ‘basic research’ coupled with ‘woncheon-technology’.
    Print ISSN: 0302-3427
    Electronic ISSN: 1471-5430
    Topics: Nature of Science, Research, Systems of Higher Education, Museum Science
    Published by Oxford University Press
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    Collaborative research for academic knowledge creation: How team characteristics, motivation, and processes influence research impact (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-08
    Description: Contending that collaboration management practices and interpersonal relationships are the main factors in successful collaboration in R&D, scholars have turned their attention to the relationships between collaborators. Internal factors in research collaboration activities are not yet understood at the team level. They are the so-called black box of collaboration study. The purpose of this paper is to empirically demonstrate how factors relating to team characteristics, motivation, and processes influence research impact. The study works from a multi-theoretical perspective, extending from behavioral science to general management study, and seeks to answer the question: How should we organize and manage a collaborative team to improve its research impact? The empirical results show that, along with previously identified qualitative and quantitative factors, input factors such as: project motivation, transformational leadership, frequent face-to-face communication, more outsourcing, more attentional resource, and more evenly distributed workload improve research impact.
    Print ISSN: 0302-3427
    Electronic ISSN: 1471-5430
    Topics: Nature of Science, Research, Systems of Higher Education, Museum Science
    Published by Oxford University Press
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    Cover Page (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-11
    Print ISSN: 2040-5790
    Electronic ISSN: 2040-5804
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
    Published by Oxford University Press
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    Too Busy to Eat with the Kids? Parental Work and Children's Eating (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-11
    Description: Parents influence their children's eating behavior by providing access to certain types of food, creating enjoyable mealtimes and associations with food, and by role modeling. In this study we investigate the association between parental employment and parental time spent eating with their children. Using data from the 2001/02 German Time Budget Survey, we explore associations between time spent eating with children and labor force participation in Germany. We find that parental labor force participation is negatively associated with time spent eating with children. Each additional hour of work per day by the mother is associated with a 2.4 minute decrease in the amount of time the mother spends eating with her children. For paternal hours of work, we find that the more time a father spends working, the less time the child spends eating with the father or with both parents. Overall, we find evidence of mother inter-gender time substitution and some amount of time/food away from home substitution. Understanding how parents allocate their time, where they are most likely to eat, and what drives these decisions is an important endeavor since parents play a critical role in shaping and reinforcing their children's eating practices.
    Keywords: D13 - Household Production and Intrahousehold Allocation
    Print ISSN: 2040-5790
    Electronic ISSN: 2040-5804
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
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    Exploring the Role of Incentives in Agricultural Extension Programs (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-11
    Description: While many governments subsidize extension programs, financial incentives for participation in extension programs are rare and little is known about such initiatives. This article assesses whether a financial incentive for an agricultural extension program for dairy farmers in Ireland has an impact on the type of farmer that participates in extension services. The findings reveal that financial incentives encourage participation, especially with cohorts of farmers that previously eschewed such programs. Several aspects of the overall economic effectiveness of the extension program are discussed and policy recommendations are outlined.
    Keywords: Q12 - Micro Analysis of Farm Firms, Farm Households, and Farm Input Markets, Q16 - R&D ; Agricultural Technology ; Agricultural Extension Services
    Print ISSN: 2040-5790
    Electronic ISSN: 2040-5804
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
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    Trade Liberalization versus Climate Change Policy for Reducing Greenhouse Gas Emissions in Agriculture: Some Insights from Norway (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-11
    Description: Using a mathematical programming model of Norwegian agriculture, we explore interconnections between trade liberalization and reductions in greenhouse gas (GHG) emissions. We show that the Doha Round proposals for a new agreement on agriculture through the World Trade Organization would not generate significant reductions in emissions. Further trade liberalization would reduce emissions by cutting agricultural production but would not change production methods. Imposing a carbon tax would lead both to a reduction in output and the extensification of production. In contrast, if farmers are allowed to claim a credit for carbon sequestration the effect is to intensify agricultural production.
    Keywords: F18 - Trade and Environment, Q17 - Agriculture in International Trade, Q54 - Climate ; Natural Disasters ; Global Warming
    Print ISSN: 2040-5790
    Electronic ISSN: 2040-5804
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
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    A Wicked Problem? Cost Containment in the Women, Infants and Children Program (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-11
    Description: The Special Supplemental Nutrition Program for Women, Infants and Children (WIC) Program is a key part of America's safety net, but its structure fails to incentivize participants to be cost-conscious in their purchases and may cause retailers to attach excessive markups to WIC products. We investigate cost containment in the WIC Program, with a focus on California. Results show that smaller vendors often charge considerably higher prices for WIC foods than their larger counterparts. However, larger vendors do not mark up WIC foods more or promote them less than comparable control products. Cost containment can be improved by targeting WIC Program sales to larger vendors when it is possible to do so without compromising participant access, and using large-vendor prices as a benchmark to limit prices set by smaller vendors.
    Keywords: D12 - Consumer Economics: Empirical Analysis, I38 - Government Policy ; Provision and Effects of Welfare Programs, Q18 - Agricultural Policy ; Food Policy
    Print ISSN: 2040-5790
    Electronic ISSN: 2040-5804
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
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    Crop Prices, Agricultural Revenues, and the Rural Economy1 (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-11
    Description: Policy makers in the United States often justify agricultural subsidies by stressing that agriculture is the engine of the rural economy. We use the increase in crop prices in the late 2000s to estimate the marginal effect of increased agricultural revenues on local economies in the U.S. Heartland. We find that $1 more in crop revenue generated 64¢ in personal income, with most going to farm proprietors and workers (59%) or nonfarmers who own farm assets (36%). The evidence suggests a weak link between revenues and nonfarm income or employment, or on population. Cuts to agricultural subsidies are therefore likely to have little effect on the broader rural economy in regions like the Heartland.
    Keywords: J43 - Agricultural Labor Markets, O13 - Agriculture ; Natural Resources ; Energy ; Environment ; Other Primary Products
    Print ISSN: 2040-5790
    Electronic ISSN: 2040-5804
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
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    A Chat about Insurance: Experimental Results from Rural Bangladesh (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-11
    Description: Farmers throughout the developing world face multiple sources of uninsured risk to agricultural production and household assets. In this paper, we present results from an experimental demand-elicitation exercise in rural Bangladesh to shed light on smallholder farmers' interest in formal insurance products. We propose a suite of insurance and savings products, and we randomly vary the price of one insurance option (area-yield insurance) and the presence of one of the savings options (group savings). Consistent with economic theory, farmers buy more of the insurance products that cover the risks they primarily face. However, because farmers are subject to a variety of risks, they do not focus on only one type of insurance; instead, they evenly split their endowment between life and disability insurance and agricultural insurance. Demand for area-yield insurance falls with price; we also observe important cross-price elasticities with other insurance products. The presence of group savings does not alter demand for insurance, though group savings is found to be a particularly popular risk management tool, especially when decisions are made in groups.
    Keywords: C93 - Field Experiments, G22 - Insurance ; Insurance Companies, O13 - Agriculture ; Natural Resources ; Energy ; Environment ; Other Primary Products, O16 - Economic Development: Financial Markets ; Saving and Capital Investment ; Corporate Finance and, Q14 - Agricultural Finance
    Print ISSN: 2040-5790
    Electronic ISSN: 2040-5804
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
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    Source attribution and process analysis for atmospheric mercury in eastern China simulated by CMAQ-Hg (2015)
    Copernicus
    Details
    Publication Date: 2015-08-11
    Description: Source attribution and process analysis for atmospheric mercury in eastern China simulated by CMAQ-Hg Atmospheric Chemistry and Physics, 15, 8767-8779, 2015 Author(s): J. Zhu, T. Wang, J. Bieser, and V. Matthias The contribution from different emission sources and atmospheric processes to gaseous elemental mercury (GEM), gaseous oxidized mercury (GOM), particulate bound mercury (PBM) and mercury deposition in eastern China were quantified using the Community Multi-scale Air Quality (CMAQ-Hg) modeling system run with a nested domain. Natural sources (NAT) and six categories of anthropogenic mercury sources (ANTH) including cement production (CEM), domestic life (DOM), industrial boilers (IND), metal production (MET), coal-fired power plants (PP) and traffic (TRA) were considered for source apportionment. NAT were responsible for 36.6 % of annual averaged GEM concentration, which was regarded as the most important source for GEM in spite of obvious seasonal variation. Among ANTH, the influence of MET and PP on GEM were most evident especially in winter. ANTH dominated the variations of GOM and PBM concentrations with contributions of 86.7 and 79.1 %, respectively. Among ANTH, IND were the largest contributor for GOM (57.5 %) and PBM (34.4 %) so that most mercury deposition came from IND. The effect of mercury emitted from out of China was indicated by a 〉 30 % contribution to GEM concentration and wet deposition. The contributions from nine processes – consisting of emissions (EMIS), gas-phase chemical production/loss (CHEM), horizontal advection (HADV), vertical advection (ZADV), horizontal advection (HDIF), vertical diffusion (VDIF), dry deposition (DDEP), cloud processes (CLDS) and aerosol processes (AERO) – were calculated for process analysis with their comparison in urban and non-urban regions of the Yangtze River delta (YRD). EMIS and VDIF affected surface GEM and PBM concentrations most and tended to compensate each other all the time in both urban and non-urban areas. However, DDEP was the most important removal process for GOM with 7.3 and 2.9 ng m −3 reduced in the surface of urban and non-urban areas, respectively, in 1 day. The diurnal profile variation of processes revealed the transportation of GOM from urban area to non-urban areas and the importance of CHEM/AERO in higher altitudes which partly caused diffusion of GOM downwards to non-urban areas. Most of the anthropogenic mercury was transported and diffused away from urban areas by HADV and VDIF and increased mercury concentrations in non-urban areas by HADV. Natural emissions only influenced CHEM and AERO more significantly than anthropogenic. Local emissions in the YRD contributed 8.5 % more to GEM and ~ 30 % more to GOM and PBM in urban areas compared to non-urban areas.
    Print ISSN: 1680-7316
    Electronic ISSN: 1680-7324
    Topics: Geosciences
    Published by Copernicus on behalf of The European Geosciences Union (EGU).
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    Seasonal variation of secondary organic aerosol tracers in Central Tibetan Plateau (2015)
    Copernicus
    Details
    Publication Date: 2015-08-11
    Description: Seasonal variation of secondary organic aerosol tracers in Central Tibetan Plateau Atmospheric Chemistry and Physics, 15, 8781-8793, 2015 Author(s): R.-Q. Shen, X. Ding, Q.-F. He, Z.-Y. Cong, Q.-Q. Yu, and X.-M. Wang Secondary organic aerosol (SOA) affects the earth's radiation balance and global climate. High-elevation areas are sensitive to global climate change. However, at present, SOA origins and seasonal variations are understudied in remote high-elevation areas. In this study, particulate samples were collected from July 2012 to July 2013 at the remote Nam Co (NC) site, Central Tibetan Plateau and analyzed for SOA tracers from biogenic (isoprene, monoterpenes and β-caryophyllene) and anthropogenic (aromatics) precursors. Among these compounds, isoprene SOA (SOA I ) tracers represented the majority (26.6 ± 44.2 ng m −3 ), followed by monoterpene SOA (SOA M ) tracers (0.97 ± 0.57 ng m −3 ), aromatic SOA (SOA A ) tracer (2,3-dihydroxy-4-oxopentanoic acid, DHOPA, 0.25 ± 0.18 ng m −3 ) and β-caryophyllene SOA tracer (β-caryophyllenic acid, 0.09 ± 0.10 ng m −3 ). SOA I tracers exhibited high concentrations in the summer and low levels in the winter. The similar temperature dependence of SOA I tracers and isoprene emission suggested that the seasonal variation of SOA I tracers at the NC site was mainly influenced by the isoprene emission. The ratio of high-NO x to low-NO x products of SOA I (2-methylglyceric acid to 2-methyltetrols) was highest in the winter and lowest in the summer, due to the influence of temperature and relative humidity. The seasonal variation of SOA M tracers was impacted by monoterpenes emission and gas-particle partitioning. During the summer to the fall, temperature effect on partitioning was the dominant process influencing SOA M tracers' variation; while the temperature effect on emission was the dominant process influencing SOA M tracers' variation during the winter to the spring. SOA M tracer levels did not elevate with increased temperature in the summer, probably resulting from the counteraction of temperature effects on emission and partitioning. The concentrations of DHOPA were 1–2 orders of magnitude lower than those reported in the urban regions of the world. Due to the transport of air pollutants from the adjacent Bangladesh and northeastern India, DHOPA presented relatively higher levels in the summer. In the winter when air masses mainly came from northwestern India, mass fractions of DHOPA in total tracers increased, although its concentrations declined. The SOA-tracer method was applied to estimate secondary organic carbon (SOC) from these four precursors. The annual average of SOC was 0.22 ± 0.29 μgC m −3 , with the biogenic SOC (sum of isoprene, monoterpenes and β-caryophyllene) accounting for 75 %. In the summer, isoprene was the major precursor with its SOC contributions of 81 %. In the winter when the emission of biogenic precursors largely dropped, the contributions of aromatic SOC increased. Our study implies that anthropogenic pollutants emitted in the Indian subcontinent could be transported to the TP and have an impact on SOC over the remote NC.
    Print ISSN: 1680-7316
    Electronic ISSN: 1680-7324
    Topics: Geosciences
    Published by Copernicus on behalf of The European Geosciences Union (EGU).
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    Influence of biomass burning on CCN number and hygroscopicity during summertime in the eastern Mediterranean (2015)
    Copernicus
    Details
    Publication Date: 2015-08-11
    Description: Influence of biomass burning on CCN number and hygroscopicity during summertime in the eastern Mediterranean Atmospheric Chemistry and Physics Discussions, 15, 21539-21582, 2015 Author(s): A. Bougiatioti, S. Bezantakos, I. Stavroulas, N. Kalivitis, P. Kokkalis, G. Biskos, N. Mihalopoulos, A. Papayannis, and A. Nenes This study investigates the CCN activity and hygroscopic properties of particles influenced by biomass burning in the eastern Mediterranean. Air masses sampled were subject to a range of atmospheric processing (several hours up to 3 days). Values of the hygroscopicity parameter, κ, were derived from cloud condensation nuclei (CCN) measurements and a Hygroscopic Tandem Differential Mobility Analyzer (HTDMA). An Aerosol Chemical Speciation Monitor (ACSM) was also used to determine the chemical composition and mass concentration of non-refractory components of the submicron aerosol fraction. During fire events, the increased organic content (and lower inorganic fraction) of the aerosol decreases the hygroscopicity parameter, κ, for all particle sizes. The reason, however, for this decrease was not the same for all size modes; smaller particle sizes appeared to be richer in less hygroscopic, less CCN-active components due to coagulation processes while larger particles become less hygroscopic during the biomass burning events due to condensation of less hygroscopic gaseous compounds. In addition, smaller particles exhibited considerable chemical dispersion (where hygroscopicity varied up to 100 % for particles of same size); larger particles, however, exhibited considerably less dispersion owing to the effects of aging and retained high levels of CCN activity. These conclusions are further supported by the observed mixing state determined by the HTDMA measurements. ACSM measurements indicate that the bulk composition reflects the hygroscopicity and chemical nature of the largest particles and a large fraction of the CCN concentrations sampled. Based on Positive Matrix Factorization (PMF) analysis of the organic ACSM spectra, CCN concentrations follow a similar trend with the BBOA component, with enhancements of CCN in biomass burning plumes ranging between 65 and 150 %, for supersaturations ranging between 0.2 and 0.7 %. Using multilinear regression, we determine the hygroscopicity of the prime organic aerosol components (BBOA, OOA-BB and OOA); it is found that the total organic hygroscopicity is very close to the inferred hygroscopicity of the oxygenated organic aerosol components. Finally, the transformation of freshly-emitted biomass burning (BBOA) to more oxidized organic aerosol (OOA-BB) can result in a two-fold increase of the inferred organic hygroscopicity. Almost 10 % of the total aerosol hygroscopicity is related to the two biomass burning components (BBOA and OOA-BB), which in turn contribute almost 35 % to the fine-particle organic water of the aerosol. This is important as organic water can contribute to the atmospheric chemistry and the direct radiative forcing.
    Print ISSN: 1680-7367
    Electronic ISSN: 1680-7375
    Topics: Geosciences
    Published by Copernicus on behalf of The European Geosciences Union (EGU).
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    Measurement-based direct radiative effect by brown carbon over Indo-Gangetic Plain (2015)
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    Publication Date: 2015-08-11
    Description: Measurement-based direct radiative effect by brown carbon over Indo-Gangetic Plain Atmospheric Chemistry and Physics Discussions, 15, 21583-21606, 2015 Author(s): A. Arola, G. L. Schuster, M. R. A. Pitkänen, O. Dubovik, H. Kokkola, A. V. Lindfors, T. Mielonen, T. Raatikainen, S. Romakkaniemi, S. N. Tripathi, and H. Lihavainen The importance of light absorbing organic aerosols, often called brown carbon (BrC), has become evident in recent years. However, there are relatively few measurement-based estimates for the direct radiative effect of BrC so far. In those earlier studies, the AErosol RObotic NETwork (AERONET) measured Aerosol Absorption Optical Depth (AAOD) and Absorption Angstrom Exponent (AAE) have been exploited. However, these two pieces of information are clearly not sufficient to separate properly carbonaceous aerosols from dust, while imaginary indices of refraction would contain more and better justified information for this purpose. This is first time that the direct radiative effect (DRE) of BrC is estimated by exploiting the AERONET-retrieved imaginary indices. We estimated it for four sites in Indo-Gangetic Plain (IGP), Karachi, Lahore, Kanpur and Gandhi College. We found a distinct seasonality, which was generally similar among all the sites, but with slightly different strengths. The monthly warming effect up to 0.5 W m -2 takes place during spring season. On the other hand, BrC results in overall cooling effect in the winter season, which can reach levels close to −1W m -2 . We then estimated similarly also DRE of black carbon and total aerosol, in order to assess the relative significance of BrC radiative effect in the radiative effects of other components. Even though BrC impact seems minor in this context, we demonstrated that it is not insignificant and moreover that it is crucial to perform spectrally resolved radiative transfer calculations to obtain good estimates for DRE of BrC.
    Print ISSN: 1680-7367
    Electronic ISSN: 1680-7375
    Topics: Geosciences
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    Contrail life cycle and properties from 1 year of MSG/SEVIRI rapid-scan images (2015)
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    Publication Date: 2015-08-11
    Description: Contrail life cycle and properties from 1 year of MSG/SEVIRI rapid-scan images Atmospheric Chemistry and Physics, 15, 8739-8749, 2015 Author(s): M. Vázquez-Navarro, H. Mannstein, and S. Kox The automatic contrail tracking algorithm (ACTA) – developed to automatically follow contrails as they age, drift and spread – enables the study of a large number of contrails and the evolution of contrail properties with time. In this paper we present a year's worth of tracked contrails, from August 2008 to July 2009 in order to derive statistically significant mean values. The tracking is performed using the 5 min rapid-scan mode of the Spinning Enhanced Visible and Infrared Imager (SEVIRI) on board the Meteosat Second Generation (MSG) satellites. The detection is based on the high spatial resolution of the images provided by the Moderate Resolution Imaging Spectroradiometer on board the Terra satellite (Terra/MODIS), where a contrail detection algorithm (CDA) is applied. The results show the satellite-derived average lifetimes of contrails and contrail-cirrus along with the probability density function (PDF) of other geometric characteristics such as mean coverage, distribution and width. In combination with specifically developed algorithms (RRUMS; Rapid Retrieval of Upwelling irradiance from MSG/SEVIRI and COCS (Cirrus Optical properties derived from CALIOP and SEVIRI), explained below) it is possible to derive the radiative forcing (RF), energy forcing (EF), optical thickness (τ) and altitude of the tracked contrails. Mean values here retrieved are duration, 1 h; length, 130 km; width, 8 km; altitude, 11.7 km; optical thickness, 0.34. Radiative forcing and energy forcing are shown for land/water backgrounds in day/night situations.
    Print ISSN: 1680-7316
    Electronic ISSN: 1680-7324
    Topics: Geosciences
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    Accounting for the effects of sastrugi in the CERES clear-sky Antarctic shortwave angular distribution models (2015)
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    Publication Date: 2015-08-11
    Description: Accounting for the effects of sastrugi in the CERES clear-sky Antarctic shortwave angular distribution models Atmospheric Measurement Techniques, 8, 3163-3175, 2015 Author(s): J. Corbett and W. Su The Cloud and the Earth's Radiant Energy System (CERES) instruments on NASA's Terra, Aqua and Soumi NPP satellites are used to provide a long-term measurement of Earth's energy budget. To accomplish this, the radiances measured by the instruments must be inverted to fluxes by the use of a scene-type-dependent angular distribution model (ADM). For permanent snow scenes over Antarctica, shortwave (SW) ADMs are created by compositing radiance measurements over the full viewing zenith and azimuth range. However, the presence of small-scale wind blown roughness features called sastrugi cause the BRDF (bidirectional reflectance distribution function) of the snow to vary significantly based upon the solar azimuth angle and location. This can result in monthly regional biases between −12 and 7.5 Wm −2 in the inverted TOA (top-of-atmosphere) SW flux. The bias is assessed by comparing the CERES shortwave fluxes derived from nadir observations with those from all viewing zenith angles, as the sastrugi affect fluxes inverted from the oblique viewing angles more than for the nadir viewing angles. In this paper we further describe the clear-sky Antarctic ADMs from Su et al. (2015). These ADMs account for the sastrugi effect by using measurements from the Multi-Angle Imaging Spectro-Radiometer (MISR) instrument to derive statistical relationships between radiance from different viewing angles. We show here that these ADMs reduce the bias and artifacts in the CERES SW flux caused by sastrugi, both locally and Antarctic-wide. The regional monthly biases from sastrugi are reduced to between −5 and 7 Wm −2 , and the monthly-mean biases over Antarctica are reduced by up to 0.64 Wm −2 , a decrease of 74 %. These improved ADMs are used as part of the Edition 4 CERES SSF (Single Scanner Footprint) data.
    Print ISSN: 1867-1381
    Electronic ISSN: 1867-8548
    Topics: Geosciences
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    Space-borne observation of methane from atmospheric infrared sounder version 6: validation and implications for data analysis (2015)
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    Publication Date: 2015-08-11
    Description: Space-borne observation of methane from atmospheric infrared sounder version 6: validation and implications for data analysis Atmospheric Measurement Techniques Discussions, 8, 8563-8597, 2015 Author(s): X. Xiong, F. Weng, Q. Liu, and E. Olsen Atmospheric Methane (CH 4 ) is generated as a standard product in recent version of the hyperspectral Atmospheric Infrared Sounder (AIRS-V6) aboard NASA's Aqua satellite at the NASA Goddard Earth Sciences Data and Information Services Center (NASA/GES/DISC). Significant improvements in AIRS-V6 was expected but without a thorough validation. This paper first introduced the improvements of CH 4 retrieval in AIRS-V6 and some characterizations, then presented the results of validation using ~ 1000 aircraft profiles from several campaigns spread over a couple of years and in different regions. It was found the mean biases of AIRS CH 4 at layers 343–441 and 441–575 hPa are −0.76 and −0.05 % and the RMS errors are 1.56 and 1.16 %, respectively. Further analysis demonstrates that the errors in the spring and in the high northern latitudes are larger than in other seasons or regions. The error is correlated with Degree of Freedoms (DOFs), particularly in the tropics or in the summer, and cloud amount, suggesting that the "observed" spatiotemporal variation of CH 4 by AIRS is imbedded with some artificial impact from the retrieval sensitivity in addition to its variation in reality, so the variation of information content in the retrievals needs to be taken into account in data analysis of the retrieval products. Some additional filtering (i.e. rejection of profiles with obvious oscillation as well as those deviating greatly from the norm) for quality control is recommended for the users to better utilize AIRS-V6 CH 4 , and their implementation in the future versions of the AIRS retrieval algorithm is under consideration.
    Electronic ISSN: 1867-8610
    Topics: Geosciences
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    Impact of aerosols on the OMI tropospheric NO 2 retrievals over industrialized regions: how accurate is the aerosol correction of cloud-free scenes via a simple cloud model? (2015)
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    Publication Date: 2015-08-11
    Description: Impact of aerosols on the OMI tropospheric NO 2 retrievals over industrialized regions: how accurate is the aerosol correction of cloud-free scenes via a simple cloud model? Atmospheric Measurement Techniques Discussions, 8, 8385-8437, 2015 Author(s): J. Chimot, T. Vlemmix, J. P. Veefkind, J. F. de Haan, and P. F. Levelt The Ozone Monitoring Instrument (OMI) instrument has provided daily global measurements of tropospheric NO 2 for more than a decade. Numerous studies have drawn attention to the complexities related to measurements of tropospheric NO 2 in the presence of aerosols. Fine particles affect the OMI spectral measurements and the length of the average light path followed by the photons. However, they are not explicitly taken into account in the current OMI tropospheric NO 2 retrieval chain. Instead, the operational OMI O 2 -O 2 cloud retrieval algorithm is applied both to cloudy scenes and to cloud free scenes with aerosols present. This paper describes in detail the complex interplay between the spectral effects of aerosols, the OMI O 2 -O 2 cloud retrieval algorithm and the impact on the accuracy of the tropospheric NO 2 retrievals through the computed Air Mass Factor (AMF) over cloud-free scenes. Collocated OMI NO 2 and MODIS Aqua aerosol products are analysed over East China, in industrialized area. In addition, aerosol effects on the tropospheric NO 2 AMF and the retrieval of OMI cloud parameters are simulated. Both the observation-based and the simulation-based approach demonstrate that the retrieved cloud fraction linearly increases with increasing Aerosol Optical Thickness (AOT), but the magnitude of this increase depends on the aerosol properties and surface albedo. This increase is induced by the additional scattering effects of aerosols which enhance the scene brightness. The decreasing effective cloud pressure with increasing AOT represents primarily the absorbing effects of aerosols. The study cases show that the actual aerosol correction based on the implemented OMI cloud model results in biases between −20 and −40 % for the DOMINO tropospheric NO 2 product in cases of high aerosol pollution (AOT ≥ 0.6) and elevated particles. On the contrary, when aerosols are relatively close to the surface or mixed with NO 2 , aerosol correction based on the cloud model results in overestimation of the DOMINO tropospheric NO 2 product, between 10 and 20 %. These numbers are in line with comparison studies between ground-based and OMI tropospheric NO 2 measurements under conditions with high aerosol pollution and elevated particles. This highlights the need to implement an improved aerosol correction in the computation of tropospheric NO 2 AMFs.
    Electronic ISSN: 1867-8610
    Topics: Geosciences
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    Sensitivity of thermal infrared sounders to the chemical and micro-physical properties of UTLS secondary sulphate aerosols (2015)
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    Publication Date: 2015-08-11
    Description: Sensitivity of thermal infrared sounders to the chemical and micro-physical properties of UTLS secondary sulphate aerosols Atmospheric Measurement Techniques Discussions, 8, 8439-8481, 2015 Author(s): P. Sellitto and B. Legras Monitoring upper tropospheric-lower stratospheric (UTLS) secondary sulphate aerosols and their chemical and micro-physical properties from satellite nadir observations is crucial to better understand their formation and evolution processes and then to estimate their impact to the UTLS chemistry, and on regional and global radiative balance. Here we present a study aimed at the evaluation of the sensitivity of thermal infrared (TIR) satellite nadir observations to the chemical composition and the size distribution of idealized UTLS sulphate aerosol layers. The extinction properties of sulphuric acid/water droplets, for different sulphuric acid mixing ratios and temperatures, are systematically analysed. The extinction coefficients are derived by means of a Mie code, using refractive indexes taken from the GEISA (Gestion et Étude des Informations Spectroscopiques Atmosphériques: Management and Study of Spectroscopic Information) spectroscopic database and log-normal size distributions with different effective radii and number concentrations. IASI (Infrared Atmospheric Sounding Interferometer) pseudo-observations are generated using forward radiative transfer calculations performed with the 4A (Automatized Atmospheric Absorption Atlas) radiative transfer model, to estimate the impact of the extinction of idealized aerosol layers, at typical UTLS conditions, on the brightness temperature spectra observed by this satellite instrument. We found a marked and typical spectral signature of these aerosol layers between 700 and 1200 cm −1 , due to the absorption bands of the sulphate and bi-sulphate ions and the undissociated sulphuric acid, with the main absorption peaks at 1170 and 905 cm −1 . The dependence of the aerosol spectral signature to the sulphuric acid mixing ratio, and effective number concentration and radius, as well as the role of interferring parameters like the ozone, sulphur dioxide, carbon dioxide and ash absorption, and temperature and water vapour profile uncertainties, are analyzed and critically discussed.
    Electronic ISSN: 1867-8610
    Topics: Geosciences
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    Global cloud top height retrieval using SCIAMACHY limb spectra: model studies and first results (2015)
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    Publication Date: 2015-08-11
    Description: Global cloud top height retrieval using SCIAMACHY limb spectra: model studies and first results Atmospheric Measurement Techniques Discussions, 8, 8295-8352, 2015 Author(s): K.-U. Eichmann, L. Lelli, C. von Savigny, H. Sembhi, and J. P. Burrows Cloud top heights (CTH) were retrieved for the period 1 January 2003 to 7 April 2012 using height-resolved limb spectra measured with the Scanning Imaging Absorption spectroMeter for Atmospheric CHartographY (SCIAMACHY) on board ENVISAT (ENVIronmental SATellite). In this study, we tested the sensitivity of the colour index method used in the retrieval code SCODA (SCIAMACHY Cloud Detection Algorithm) and the accuracy of the retrieved CTHs in comparison to other methods. Sensitivity studies using the radiative transfer model SCIATRAN showed that the method is capable of generally detecting cloud tops down to about 5 km and very thin cirrus clouds even up to the tropopause. Volcanic particles can also be detected that occasionally reach the lower stratosphere. Low clouds at 2–3 km can only be retrieved under very clean atmospheric conditions, as light scattering of aerosols interferes with the cloud retrieval. Upper tropospheric ice clouds are detectable for cloud optical depths down to about τ N = 0.005, which is in the subvisual range. The detection sensitivity decreases towards the surface. An optical thickness of roughly 0.1 was the lower detection limit for water cloud top heights at 5 km. This value is much lower than thresholds reported for the passive cloud detection in nadir viewing direction. Comparisons with SCIAMACHY nadir cloud top heights, calculated with the Semi-Analytical CloUd Retrieval Algorithm (SACURA), showed a good agreement in the global cloud field distribution. But only opaque clouds (τ N 〉 5) are detectable with the nadir passive retrieval technique in the UV-visible and infrared wavelength range. So due to the frequent occurrence of thin and sub-visual cirrus clouds in the tropics, large cloud top height deviations were detected between both viewing geometries. Also the land/sea contrast seen in nadir retrievals was not detected in limb mode. Co-located cloud top height measurements of the limb viewing Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) on ENVISAT for the period from January 2008 to March 2012 were compared, showing good agreement to within 1 km, which is smaller than the vertical field of view of both instruments. Lower stratospheric aerosols from volcanic eruptions occasionally interfered with the cloud retrieval and inhibited detection of tropospheric clouds. Examples of the impact of these events are shown for the volcanoes Kasatochi in August 2008, Sarychev Peak in June 2009, and Nabro in June 2010. Long-lasting aerosol layers were detected after these events in the Northern Hemisphere down to the tropics. Particle top heights up to about 22 km were retrieved in 2009, when the enhanced lower stratospheric aerosol layer persisted for about 7 months. Up to about 82 % of the Northern hemispheric lower stratosphere between 30° and 70° was covered by scattering particles in August 2009 and nearly half in October 2008.
    Electronic ISSN: 1867-8610
    Topics: Geosciences
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    Operation of the Airmodus A11 nano Condensation Nucleus Counter at various inlet pressures, various operation temperatures and design of a new inlet system (2015)
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    Publication Date: 2015-08-11
    Description: Operation of the Airmodus A11 nano Condensation Nucleus Counter at various inlet pressures, various operation temperatures and design of a new inlet system Atmospheric Measurement Techniques Discussions, 8, 8483-8508, 2015 Author(s): J. Kangasluoma, A. Franchin, J. Duplissy, L. Ahonen, F. Korhonen, M. Attoui, J. Mikkilä, K. Lehtipalo, J. Vanhanen, M. Kulmala, and T. Petäjä Measuring sub-3 nm particles outside of controlled laboratory conditions is a challenging task, as many of the instruments are operated at their limits and are subjected to changing ambient conditions. In this study, we advance the current understanding on the operation of Airmodus A11 nano Condensation Nucleus Counter (nCNC), which consists of a A10 Particle Size Magnifier (PSM) and A20 condensation particle counter (CPC). We explore the effect of the inlet line pressure on the measured particle concentration. We identify two different regions inside the instrument where supersaturation of working fluid can take place. We show the possibility of varying the cut-off of the instrument from 1 to 6 nm, a wider size range than the one usually covered by the PSM. We also present a new inlet system, which allows automated measurements of the background, minimizes the diffusion losses in the sampling line and is equipped with an electrostatic filter to remove ions. Finally, our view of the guidelines for optimal use of the Airmodus nCNC are provided.
    Electronic ISSN: 1867-8610
    Topics: Geosciences
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    Looking beyond stratification: a model-based analysis of the biological drivers of oxygen depletion in the North Sea (2015)
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    Publication Date: 2015-08-11
    Description: Looking beyond stratification: a model-based analysis of the biological drivers of oxygen depletion in the North Sea Biogeosciences Discussions, 12, 12543-12610, 2015 Author(s): F. Große, N. Greenwood, M. Kreus, H. J. Lenhart, D. Machoczek, J. Pätsch, L. A. Salt, and H. Thomas The problem of low oxygen conditions, often referred to as hypoxia, occurs regularly in the North Sea, a temperate European shelf sea. Stratification represents a major process regulating the seasonal dynamics of bottom oxygen. However, lowest oxygen conditions in the North Sea do not occur in the regions of strongest stratification. This suggests that stratification is an important prerequisite for hypoxia, but that the complex interaction between hydrodynamics and the biological processes drives its development. In this study we use the ecosystem model HAMSOM-ECOHAM5 to provide a general characteristic of the different North Sea oxygen regimes, and to quantify the impact of the different physical and biological factors driving the oxygen dynamics below the thermocline and in the bottom layer. We show that the North Sea can be subdivided into three different regimes in terms of oxygen dynamics: (1) a highly productive, non-stratified coastal regime, (2) a productive, seasonally stratified regime with a small sub-thermocline volume, and (3) a productive, seasonally stratified regime with a large sub-thermocline volume, with regime 2 being highly susceptible to hypoxic conditions. Our analysis of the different processes driving the oxygen development reveals that inter-annual variations in the oxygen conditions are caused by variations in primary production, while spatial differences can be attributed to differences in stratification and water depth. In addition, we show that benthic bacteria represent the main oxygen consumers in the bottom layer, consistently accounting for more than 50 % of the overall consumption. By providing these valuable insights, we show that ecosystem models can be a useful tool for the interpretation of observations and the estimation of the impact of anthropogenic drivers on the North Sea oxygen conditions.
    Print ISSN: 1810-6277
    Electronic ISSN: 1810-6285
    Topics: Biology , Geosciences
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    Impact of the oceanic geothermal heat flux on a glacial ocean state (2015)
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    Publication Date: 2015-08-11
    Description: Impact of the oceanic geothermal heat flux on a glacial ocean state Climate of the Past Discussions, 11, 3597-3624, 2015 Author(s): M. Ballarotta, F. Roquet, S. Falahat, Q. Zhang, and G. Madec The oceanic geothermal heating (OGH) has a significant impact on the present-day ocean state, but its role during glacial periods, when the ocean circulation and stratification were different from those of today, remains poorly known. In the present study, we analyzed the response of the glacial ocean to OGH, by comparing ocean simulations of the Last Glacial Maximum (LGM, ∼ 21 ka ago) including or not geothermal heating. We found that applying the OGH warmed the Antarctic Bottom Waters (AABW) by ∼ 0.4 °C and increased the abyssal circulation by 15 to 30 % north of 30° S in the deep Pacific and Atlantic basins. The geothermally heated deep waters were then advected toward the Southern Ocean where they upwelled to the surface due to the Ekman transport. The extra heat transport towards Antarctica acted to reduce the amount of sea ice contributing to the freshening of the whole AABW overturning cell. The global amount of salt being conserved, this bottom freshening induced a salinification of the North Atlantic and North Pacific surface and intermediate waters, contributing to the deepening of the North Atlantic Deep Water. This indirect mechanism is responsible for the largest observed warming, found in the North Atlantic deep western boundary current between 2000 and 3000 m (up to 2 °C). The characteristic time scale of the ocean response to the OGH corresponds to an advective time scale (associated with the overturning of the AABW cell) rather than a diffusive time scale. The OGH might facilitate the transition from a glacial to an inter-glacial state but its effect on the deep stratification seems insufficient to drive alone an abrupt climate change.
    Print ISSN: 1814-9340
    Electronic ISSN: 1814-9359
    Topics: Geosciences
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    Woodland Survey of Great Britain 1971–2001 (2015)
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    Publication Date: 2015-08-11
    Description: Woodland Survey of Great Britain 1971–2001 Earth System Science Data, 7, 203-214, 2015 Author(s): C. M. Wood, S. M. Smart, and R. G. H. Bunce The Woodland Survey of Great Britain is a unique data set, consisting of a detailed range of ecological measurements at a national scale, covering a time span of 30 years. A set of 103 woods spread across Britain were first surveyed in 1971, which were again surveyed in 2000–2003 (for convenience referred to subsequently as the "2001 survey"). Standardised methods of describing the trees, shrubs, ground flora, soils and general habitats present were used for both sets of surveys. The sample of 1648 plots spread through 103 woodland sites located across Britain makes it probably the most extensive quantitative ecological woodland survey undertaken in Britain; it is also notable for the range of sites that have been revisited after such a long interval. The data set provides a unique opportunity to explore the effects of a range of potential drivers of woodland change that operated between 1971 and 2001. The data set is available in four discrete parts, which have been assigned the following DOIs: doi:10.5285/4d93f9ac-68e3-49cf-8a41-4d02a7ead81a (Kirby et al., 2013b), doi:10.5285/d6409d40-58fe-4fa7-b7c8-71a105b965b4 (Kirby et al., 2013d), doi:10.5285/fb1e474d-456b-42a9-9a10-a02c35af10d2 (Kirby et al., 2013c), doi:10.5285/2d023ce9-6dbe-4b4f-a0cd-34768e1455ae (Kirby et al., 2013a).
    Print ISSN: 1866-3508
    Electronic ISSN: 1866-3516
    Topics: Geosciences
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    Estimating greenhouse gas emissions from travel – a GIS-based study (2015)
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    Publication Date: 2015-08-11
    Description: Estimating greenhouse gas emissions from travel – a GIS-based study Geographica Helvetica, 70, 185-192, 2015 Author(s): S. Kuonen Conferences, meetings and congresses are an important part of today's economic and scientific world. But the environmental impact, especially from greenhouse gas emissions associated with travel, can be extensive. Anthropogenic greenhouse gas (GHG) emissions account for the warming of the atmosphere and oceans. This study draws on the need to quantify and reduce greenhouse gas emissions associated with travel activities and aims to give suggestions for organizers and participants on possible ways to reduce greenhouse gas emissions, demonstrated on the example of the European Geography Association (EGEA) Annual Congress 2013 in Wasilkow, Poland. The lack of a comprehensive methodology for the estimation of greenhouse gas emissions from travel led to an outline of a methodology that uses geographic information systems (GIS) to calculate travel distances. The calculation of travel distances in GIS is adapted from actual transportation infrastructure, derived from the open-source platform OpenStreetMap. The methodology also aims to assess the possibilities to reduce GHG emissions by choosing different means of transportation and a more central conference location. The results of the participants of the EGEA congress, who shared their travel data for this study, show that the total travel distance adds up to 238 000 km, with average travel distance of 2429 km per participant. The travel activities of the participants in the study result in total GHG emissions of 39 300 kg CO 2 -eq including both outward and return trip. On average a participant caused GHG emissions of 401 kg CO 2 -eq. In addition, the analysis of the travel data showed differences in travel behaviour depending on the distance between conference site and point of origin. The findings on travel behaviour have then been used to give an estimation of total greenhouse gas emissions from travel for all participants of the conference, which result in a total amount of 79 711 kg CO 2 -eq. The potential for reducing greenhouse gas emissions by substituting short flights with train rides and car rides with bus and train rides is limited. Only 6 % of greenhouse gas emissions could be saved by applying these measures. Further considerable savings could only be made by substituting longer flights (32.6 %) or choosing a more central conference location (26.3 %).
    Print ISSN: 0016-7312
    Electronic ISSN: 2194-8798
    Topics: Ethnic Sciences , Geography
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    Singular vector based targeted observations of chemical constituents: description and first application of the EURAD-IM-SVA (2015)
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    Publication Date: 2015-08-11
    Description: Singular vector based targeted observations of chemical constituents: description and first application of the EURAD-IM-SVA Geoscientific Model Development Discussions, 8, 6267-6307, 2015 Author(s): N. Goris and H. Elbern Measurements of the large dimensional chemical state of the atmosphere provide only sparse snapshots of the state of the system due to their typically insufficient temporal and spatial density. In order to optimize the measurement configurations despite those limitations, the present work describes the identification of sensitive states of the chemical system as optimal target areas for adaptive observations. For this purpose, the technique of singular vector analysis (SVA), which has been proved effective for targeted observations in numerical weather predication, is implemented into the chemical transport model EURAD-IM (EURopean Air pollution and Dispersion – Inverse Model) yielding the EURAD-IM-SVA. Besides initial values, emissions are investigated as critical simulation controlling targeting variables. For both variants, singular vectors are applied to determine the optimal placement for observations and moreover to quantify which chemical compounds have to be observed with preference. Based on measurements of the airship based ZEPTER-2 campaign, the EURAD-IM-SVA has been evaluated by conducting a comprehensive set of model runs involving different initial states and simulation lengths. Since the considered cases are restricted in terms of considered chemical compounds and selected areas, they allow for a retracing of the results and a confirmation of their correctness. Our analysis shows that the optimal placement for observations of chemical species is not entirely determined by mere transport and mixing processes. Rather, a combination of initial chemical concentrations, chemical conversions, and meteorological processes determine the influence of chemical compounds and regions. We furthermore demonstrate that the optimal placement of observations of emission strengths is highly dependent on the location of emission sources and that the benefit of including emissions as target variables outperforms the value of initial value optimisation with growing simulation length. The obtained results confirm the benefit of considering both initial values and emission strengths as target variables and of applying the EURAD-IM-SVA for measurement decision guidance with respect to chemical compounds.
    Print ISSN: 1991-9611
    Electronic ISSN: 1991-962X
    Topics: Geosciences
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    A global scale mechanistic model of the photosynthetic capacity (2015)
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    Publication Date: 2015-08-11
    Description: A global scale mechanistic model of the photosynthetic capacity Geoscientific Model Development Discussions, 8, 6217-6266, 2015 Author(s): A. A. Ali, C. Xu, A. Rogers, R. A. Fisher, S. D. Wullschleger, N. G. McDowell, E. C. Massoud, J. A. Vrugt, J. D. Muss, J. B. Fisher, P. B. Reich, and C. J. Wilson Although plant photosynthetic capacity as determined by the maximum carboxylation rate (i.e., V c, max25 ) and the maximum electron transport rate (i.e., J max25 ) at a reference temperature (generally 25 °C) is known to vary substantially in space and time in response to environmental conditions, it is typically parameterized in Earth system models (ESMs) with tabulated values associated to plant functional types. In this study, we developed a mechanistic model of leaf utilization of nitrogen for assimilation (LUNA V1.0) to predict the photosynthetic capacity at the global scale under different environmental conditions, based on the optimization of nitrogen allocated among light capture, electron transport, carboxylation, and respiration. The LUNA model was able to reasonably well capture the observed patterns of photosynthetic capacity in view that it explained approximately 55 % of the variation in observed V c, max25 and 65 % of the variation in observed J max25 across the globe. Our model simulations under current and future climate conditions indicated that V c, max25 could be most affected in high-latitude regions under a warming climate and that ESMs using a fixed V c, max25 or J max25 by plant functional types were likely to substantially overestimate future global photosynthesis.
    Print ISSN: 1991-9611
    Electronic ISSN: 1991-962X
    Topics: Geosciences
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    Uncertainties in calculating precipitation climatology in East Asia (2015)
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    Publication Date: 2015-08-11
    Description: Uncertainties in calculating precipitation climatology in East Asia Hydrology and Earth System Sciences Discussions, 12, 7765-7783, 2015 Author(s): J. Kim and S. K. Park This study examines the uncertainty in calculating the fundamental climatological characteristics of precipitation in the East Asia region from multiple fine-resolution gridded analysis datasets based on in-situ rain gauge observations. Five observation-based gridded precipitation datasets are used to derive the long-term means, standard deviations in lieu of interannual variability and linear trends over the 28-year period from 1980 to 2007. Both the annual and summer (June–July–August) mean precipitation is examined. The agreement amongst these precipitation datasets are examined using multiple metrics including the signal-to-noise ratio (SNR) defined as the ratio between long-term means and the corresponding standard deviations, and Taylor diagrams which allows examinations of the pattern correlation, the standard deviation, and the centered root mean square error. It is found that the five gauge-based precipitation analysis datasets agree well in the long-term mean and interannual variability in most of the East Asia region including eastern China, Manchuria, South Korea, and Japan, which are densely populated and have fairly high density observation networks. The regions of large inter-dataset variations include Tibetan Plateau, Mongolia, northern Indo-China, and North Korea. The regions of large uncertainties are typically lightly populated and are characterized by severe terrain and/or extreme high elevations. Unlike the long-term mean and interannual variability, agreements between datasets in the linear trend is weak, both for the annual and summer mean values. In most of the East Asia region, the SNR for the linear trend is below 0.5, i.e., the inter-dataset variability exceeds the multi-data ensemble mean. The uncertainty in the spatial distribution of long-term means among these datasets occurs both in the spatial pattern and variability, but the uncertainty for the interannual variability and time trend is much larger in the variability than in the pattern correlation. Thus, care must be taken in using long-term trends calculated from gridded precipitation analysis data for climate studies over the East Asia region.
    Print ISSN: 1812-2108
    Electronic ISSN: 1812-2116
    Topics: Geography , Geosciences
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    Qualitative soil moisture assessment in semi-arid Africa – the role of experience and training on inter-rater reliability (2015)
    Copernicus
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    Publication Date: 2015-08-11
    Description: Qualitative soil moisture assessment in semi-arid Africa – the role of experience and training on inter-rater reliability Hydrology and Earth System Sciences, 19, 3505-3516, 2015 Author(s): M. Rinderer, H. C. Komakech, D. Müller, G. L. B. Wiesenberg, and J. Seibert Soil and water management is particularly relevant in semi-arid regions to enhance agricultural productivity. During periods of water scarcity, soil moisture differences are important indicators of the soil water deficit and are traditionally used for allocating water resources among farmers of a village community. Here we present a simple, inexpensive soil wetness classification scheme based on qualitative indicators which one can see or touch on the soil surface. It incorporates the local farmers' knowledge on the best soil moisture conditions for seeding and brick making in the semi-arid environment of the study site near Arusha, Tanzania. The scheme was tested twice in 2014 with farmers, students and experts (April: 40 persons, June: 25 persons) for inter-rater reliability, bias of individuals and functional relation between qualitative and quantitative soil moisture values. During the test in April farmers assigned the same wetness class in 46 % of all cases, while students and experts agreed on about 60 % of all cases. Students who had been trained in how to apply the method gained higher inter-rater reliability than their colleagues with only a basic introduction. When repeating the test in June, participants were given improved instructions, organized in small subgroups, which resulted in a higher inter-rater reliability among farmers. In 66 % of all classifications, farmers assigned the same wetness class and the spread of class assignments was smaller. This study demonstrates that a wetness classification scheme based on qualitative indicators is a robust tool and can be applied successfully regardless of experience in crop growing and education level when an in-depth introduction and training is provided. The use of a simple and clear layout of the assessment form is important for reliable wetness class assignments.
    Print ISSN: 1027-5606
    Electronic ISSN: 1607-7938
    Topics: Geography , Geosciences
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    Nonlinear effects of locally heterogeneous hydraulic conductivity fields on regional stream–aquifer exchanges (2015)
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    Publication Date: 2015-08-11
    Description: Nonlinear effects of locally heterogeneous hydraulic conductivity fields on regional stream–aquifer exchanges Hydrology and Earth System Sciences Discussions, 12, 7727-7764, 2015 Author(s): J. Zhu, C. L. Winter, and Z. Wang Computational experiments are performed to evaluate the effects of locally heterogeneous conductivity fields on regional exchanges of water between stream and aquifer systems in the Middle Heihe River Basin (MHRB) of northwestern China. The effects are found to be nonlinear in the sense that simulated discharges from aquifers to streams are systematically lower than discharges produced by a base model parameterized with relatively coarse effective conductivity. A similar, but weaker, effect is observed for stream leakage. The study is organized around three hypotheses: (H1) small-scale spatial variations of conductivity significantly affect regional exchanges of water between streams and aquifers in river basins, (H2) aggregating small-scale heterogeneities into regional effective parameters systematically biases estimates of stream–aquifer exchanges, and (H3) the biases result from slow-paths in groundwater flow that emerge due to small-scale heterogeneities. The hypotheses are evaluated by comparing stream–aquifer fluxes produced by the base model to fluxes simulated using realizations of the MHRB characterized by local (grid-scale) heterogeneity. Levels of local heterogeneity are manipulated as control variables by adjusting coefficients of variation. All models are implemented using the MODFLOW simulation environment, and the PEST tool is used to calibrate effective conductivities defined over 16 zones within the MHRB. The effective parameters are also used as expected values to develop log-normally distributed conductivity ( K ) fields on local grid scales. Stream-aquifer exchanges are simulated with K fields at both scales and then compared. Results show that the effects of small-scale heterogeneities significantly influence exchanges with simulations based on local-scale heterogeneities always producing discharges that are less than those produced by the base model. Although aquifer heterogeneities are uncorrelated at local scales, they appear to induce coherent slow-paths in groundwater fluxes that in turn reduce aquifer–stream exchanges. Since surface water–groundwater exchanges are critical hydrologic processes in basin-scale water budgets, these results also have implications for water resources management.
    Print ISSN: 1812-2108
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    Topics: Geography , Geosciences
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    Near–surface air temperature and snow skin temperature comparison from CREST-SAFE station data with MODIS land surface temperature data (2015)
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    Publication Date: 2015-08-11
    Description: Near–surface air temperature and snow skin temperature comparison from CREST-SAFE station data with MODIS land surface temperature data Hydrology and Earth System Sciences Discussions, 12, 7665-7687, 2015 Author(s): C. L. Pérez Díaz, T. Lakhankar, P. Romanov, J. Muñoz, R. Khanbilvardi, and Y. Yu Land Surface Temperature (LST) is a key variable (commonly studied to understand the hydrological cycle) that helps drive the energy balance and water exchange between the Earth's surface and its atmosphere. One observable constituent of much importance in the land surface water balance model is snow. Snow cover plays a critical role in the regional to global scale hydrological cycle because rain-on-snow with warm air temperatures accelerates rapid snow-melt, which is responsible for the majority of the spring floods. Accurate information on near-surface air temperature ( T -air) and snow skin temperature ( T -skin) helps us comprehend the energy and water balances in the Earth's hydrological cycle. T -skin is critical in estimating latent and sensible heat fluxes over snow covered areas because incoming and outgoing radiation fluxes from the snow mass and the air temperature above make it different from the average snowpack temperature. This study investigates the correlation between MODerate resolution Imaging Spectroradiometer (MODIS) LST data and observed T -air and T -skin data from NOAA-CREST-Snow Analysis and Field Experiment (CREST-SAFE) for the winters of 2013 and 2014. LST satellite validation is imperative because high-latitude regions are significantly affected by climate warming and there is a need to aid existing meteorological station networks with the spatially continuous measurements provided by satellites. Results indicate that near-surface air temperature correlates better than snow skin temperature with MODIS LST data. Additional findings show that there is a negative trend demonstrating that the air minus snow skin temperature difference is inversely proportional to cloud cover. To a lesser extent, it will be examined whether the surface properties at the site are representative for the LST properties within the instrument field of view.
    Print ISSN: 1812-2108
    Electronic ISSN: 1812-2116
    Topics: Geography , Geosciences
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    Does drought alter hydrological functions in forest soils? An infiltration experiment (2015)
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    Publication Date: 2015-08-11
    Description: Does drought alter hydrological functions in forest soils? An infiltration experiment Hydrology and Earth System Sciences Discussions, 12, 7689-7725, 2015 Author(s): K. F. Gimbel, H. Puhlmann, and M. Weiler The water cycle is expected to change in future and severely affect precipitation patterns across central Europe and in other parts of the world, leading to more frequent and severe droughts. Usually, it is assumed that system properties, like soil properties, remain stable and will not be affected by drought events. To study if this assumption is appropriate, we address the effects of drought on the infiltration behavior of forest soils using dye tracer experiments on six sites in three regions across Germany, which were forced into drought conditions. The sites cover clayey, loamy and sandy textured soils. In each region, we compared a deciduous and a coniferous forest stand to address differences between the main tree species. The results of the dye tracer experiments show clear evidence for changes in infiltration behavior at the sites. The infiltration changed at the clayey plots from regular and homogeneous flow to fast preferential flow. Similar behavior was observed at the loamy plots, where large areas in the upper layers remained dry, displaying signs of strong water repellency. This was confirmed by WDPT tests, which revealed, in all except one plot, moderate to severe water repellency. Water repellency was also accountable for the change of regular infiltration to fingered flow in the sandy soils. The results of this study suggest that the "drought-history" or generally the climatic conditions in the past of a soil are more important than the actual antecedent soil moisture status regarding hydrophobicity and infiltration behavior; and also, that drought effects on infiltration need to be considered in hydrological models to obtain realistic predictions concerning water quality and quantity in runoff and groundwater recharge.
    Print ISSN: 1812-2108
    Electronic ISSN: 1812-2116
    Topics: Geography , Geosciences
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    State determination of catalytic converters based on an ultra-wideband communication system (2015)
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    Publication Date: 2015-08-11
    Description: State determination of catalytic converters based on an ultra-wideband communication system Journal of Sensors and Sensor Systems, 4, 255-262, 2015 Author(s): I. Motroniuk, R. Stöber, and G. Fischerauer A novel microwave-based approach for monitoring the state of aftertreatment systems such as diesel particulate filters (DPFs), three-way catalytic converters (TWCs), and selective catalytic reduction (SCR) catalysts is proposed. The volume inside the metallic housing of the DPF, TWC, or SCR is considered as a wireless communication channel between two terminals of a communication system. It is shown that, depending on the transmission channel characteristics, the properties of the catalyst, such as the catalyst state, can be inferred. This is done by means of an ultra-wideband (UWB) measurement and the subsequent evaluation and processing of the waveform in the time and frequency domains.
    Print ISSN: 2194-8771
    Electronic ISSN: 2194-878X
    Topics: Electrical Engineering, Measurement and Control Technology
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    Subscription Page (2015)
    Oxford University Press
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    Publication Date: 2015-08-11
    Print ISSN: 2040-5790
    Electronic ISSN: 2040-5804
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
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    Revisiting the Supplemental Nutrition Assistance Program cycle of food intake: Investigating heterogeneity, diet quality, and a large boost in benefit amounts (2015)
    Oxford University Press
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    Publication Date: 2015-08-11
    Description: The monthly cycle of daily food intake among adult participants in the Supplemental Nutrition Assistance Program is examined using data from the 2007–10 National Health and Nutrition Examination Survey. Exogenous variation in interview and benefit receipt dates provides means for identification, and a difference-in-differences specification is used to account for the large boost in benefits that began in April 2009 via the American Recovery and Reinvestment Act (ARRA). Caloric intake declined as much as 25% at the end of the month prior to ARRA, but not after implementation. Few differences were observed for diet quality measures or among subgroups. Increases in SNAP benefit amounts may help smooth food intake over the benefit month.
    Keywords: D12 - Consumer Economics: Empirical Analysis, E21 - Consumption ; Saving ; Wealth, I38 - Government Policy ; Provision and Effects of Welfare Programs
    Print ISSN: 2040-5790
    Electronic ISSN: 2040-5804
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
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    Deception in Experiments: Towards Guidelines on use in Applied Economics Research (2015)
    Oxford University Press
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    Publication Date: 2015-08-11
    Description: Many applied economics journals ban the use of deception in experiments, which contrasts with the policies in other academic disciplines. We examine the cases for and against deception, and describe the ways deception can be employed in applied economics experiments. We create a general ranking of harms from deception in experiments and present evidence from a survey (conducted in summer 2014) of agricultural and applied economists eliciting attitudes towards ten different deceptive practices. Survey respondents view inflicting physical or psychological harm on participants and not making promised payments as the most severe forms of deception. Less severe forms of deception include providing participants with incomplete product information and conducting an experiment using participants who are not aware they are part of an experiment. Finally, we provide recommendations for policies addressing deception in experiments.
    Keywords: C80 - General, C81 - Methodology for Collecting, Estimating, and Organizing Microeconomic Data, C90 - General
    Print ISSN: 2040-5790
    Electronic ISSN: 2040-5804
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
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    Supply Response, Marginal Cost, and Soil Erosion Implications of Stover-based Biofuels (2015)
    Oxford University Press
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    Publication Date: 2015-08-11
    Description: Existing economic analysis of corn stover as an energy feedstock has not considered potential changes in land use associated with different stover prices. We estimate the response of corn stover supply density to its price driven by changes in land use and examine its implications for a processing plant's pricing strategy and marginal cost, as well as associated changes in soil erosion. We find that plants will exploit the intensive margin as well as the extensive margin to secure additional amounts of stover. Our results show, counterintuitively, that a market for stover may result in lower soil erosion due to reallocations of land to continuous corn with removal, which, combined with no-till farming, results in lower soil erosion than the baseline without stover removal. Also contrary to expectations, using cover crops with stover removal may result in higher soil erosion due to land use changes within the fuel shed associated with optimal pricing.
    Keywords: Q15 - Land Ownership and Tenure ; Land Reform ; Land Use ; Irrigation, Q24 - Land, Q42 - Alternative Energy Sources
    Print ISSN: 2040-5790
    Electronic ISSN: 2040-5804
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
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    A comparison of chemical mechanisms using tagged ozone production potential (TOPP) analysis (2015)
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    Publication Date: 2015-08-11
    Description: A comparison of chemical mechanisms using tagged ozone production potential (TOPP) analysis Atmospheric Chemistry and Physics, 15, 8795-8808, 2015 Author(s): J. Coates and T. M. Butler Ground-level ozone is a secondary pollutant produced photochemically from reactions of NO x with peroxy radicals produced during volatile organic compound (VOC) degradation. Chemical transport models use simplified representations of this complex gas-phase chemistry to predict O 3 levels and inform emission control strategies. Accurate representation of O 3 production chemistry is vital for effective prediction. In this study, VOC degradation chemistry in simplified mechanisms is compared to that in the near-explicit Master Chemical Mechanism (MCM) using a box model and by "tagging" all organic degradation products over multi-day runs, thus calculating the tagged ozone production potential (TOPP) for a selection of VOCs representative of urban air masses. Simplified mechanisms that aggregate VOC degradation products instead of aggregating emitted VOCs produce comparable amounts of O 3 from VOC degradation to the MCM. First-day TOPP values are similar across mechanisms for most VOCs, with larger discrepancies arising over the course of the model run. Aromatic and unsaturated aliphatic VOCs have the largest inter-mechanism differences on the first day, while alkanes show largest differences on the second day. Simplified mechanisms break VOCs down into smaller-sized degradation products on the first day faster than the MCM, impacting the total amount of O 3 produced on subsequent days due to secondary chemistry.
    Print ISSN: 1680-7316
    Electronic ISSN: 1680-7324
    Topics: Geosciences
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    Size distribution and optical properties of mineral dust aerosols transported in the western Mediterranean (2015)
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    Publication Date: 2015-08-11
    Description: Size distribution and optical properties of mineral dust aerosols transported in the western Mediterranean Atmospheric Chemistry and Physics Discussions, 15, 21607-21669, 2015 Author(s): C. Denjean, F. Cassola, A. Mazzino, S. Triquet, S. Chevaillier, N. Grand, T. Bourrianne, G. Momboisse, K. Sellegri, A. Schwarzenbock, E. Freney, M. Mallet, and P. Formenti This study presents in situ aircraft measurements of Saharan mineral dust transported over the western Mediterranean basin in June–July 2013 during the ChArMEx/ADRIMED (the Chemistry-Aerosol Mediterranean Experiment/Aerosol Direct Radiative Impact on the regional climate in the MEDiterranean region) airborne campaign. Dust events differing in terms of source region (Algeria, Tunisia and Morocco), time of tranport (1–5 days) and height of transport were sampled. Mineral dust were transported above the marine boundary layer, which conversely was dominated by pollution and marine aerosols. The dust vertical structure was extremely variable and characterized by either a single layer or a more complex and stratified structure with layers originating from different source regions. Mixing of mineral dust with pollution particles was observed depending on the height of transport of the dust layers. Dust layers carried higher concentration of pollution particles at intermediate altitude (1–3 km) than at elevated altitude (〉 3 km), resulting in scattering Angstrom exponent up to 2.2 within the intermediate altitude. However, the optical properties of the dust plumes remained practically unchanged with respect to values previously measured over source regions, regardless of the altitude. Moderate light absorption of the dust plumes was observed with values of aerosol single scattering albedo at 530 nm ranging from 0.90 to 1.00 ± 0.04. Concurrent calculations from the aerosol chemical composition revealed a negligible contribution of pollution particles to the absorption properties of the dust plumes that was due to a low contribution of refractory black carbon in regards to the fraction of dust and sulfate particles. This suggests that, even in the presence of moderate pollution, likely a persistent feature in the Mediterranean, the optical properties of the dust plumes could be assimilated to those of native dust in radiative transfer simulations, modeling studies and satellite retrievals over the Mediterranean. Measurements also showed that the coarse mode of mineral dust was conserved even after 5 days of transport in the Mediterranean, which contrasts with the gravitational depletion of large particles observed during the transport of dust plumes over the Atlantic. Simulations with the WRF mesoscale meteorological model highlighted a strong vertical turbulence within the dust layers that could prevent deposition of large particles during their atmospheric transport. This has important implications for the dust radiative effects due to surface dimming, atmospheric heating and cloud formation. The results presented here add to the observational dataset necessary for evaluating the role of mineral dust on the regional climate and rainfall patterns in the western Mediterranean basin.
    Print ISSN: 1680-7367
    Electronic ISSN: 1680-7375
    Topics: Geosciences
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    Identification of particulate organosulfates in three megacities at the middle and lower reaches of the Yangtze River (2015)
    Copernicus
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    Publication Date: 2015-08-11
    Description: Identification of particulate organosulfates in three megacities at the middle and lower reaches of the Yangtze River Atmospheric Chemistry and Physics Discussions, 15, 21415-21448, 2015 Author(s): X. K. Wang, S. Rossignol, Y. Ma, L. Yao, M. Y. Wang, J. M. Chen, C. George, and L. Wang PM 2.5 filter samples have been collected in three megacities i.e., Wuhan (WH), Nanjing (NJ), and Shanghai (SH) at the middle and lower reaches of the Yangtze River, respectively. Analysis of those samples using an ultra-high performance liquid chromatography (UHPLC) coupled to an orbitrap mass spectrometer (MS) allowed detection of about two hundred particulate organosulfates (OSs), including dozens of nitrooxy-organosulfates, at each location. While aliphatic OSs represented more than 78 % of the detected OSs at the three locations, aromatic OSs were much less abundant. OSs with two to four isomers accounted for about 50 % of the total OSs on average in these megacities, and the percentage of OSs with six and more isomers in WH was more significant than those in SH and NJ. The average molecular weight, and the degrees of oxidation and saturation of OSs in the WH summer samples were greater than those in WH winter samples. In SH, the average molecular weight and the degree of oxidation of OSs in summer samples were greater than those in winter samples, but the degree of saturation was similar between the two seasons. In summer, the average molecular weight, and the degrees of oxidation and unsaturation of OSs were smallest in WH among the three cities. Between NJ and SH, the average molecular weight and the degree of saturation of OSs were close and the degree of oxidation of OSs in NJ was smaller. Kendrick mass defect diagrams and Van Krevelen diagrams indicated that the characteristics of identified OSs between in NJ and in SH shared better similarity. In addition, the identity and abundance of OSs in SH showed clear seasonal and diurnal variations. OSs in summer were more abundant than they were in winter due to stronger photochemical reactions in summer. The relative abundance of OSs at night was greater than that in the daytime and more nitrooxy-OSs existed at night, probably because of active NO 3 radical chemistry at night. In SH summer samples, OSs with 5 and 10 carbons (C 5 and C 10 ) were the most abundant, indicating the importance of isoprene and monoterpenes as precursors of OSs, whereas the relative abundances of OSs with 8, 9, and more than 14 carbons (C 8 , C 9 , and C 14+ ) were also high in SH winter samples, urging the need to further understand the precursors of OSs.
    Print ISSN: 1680-7367
    Electronic ISSN: 1680-7375
    Topics: Geosciences
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    Trace metal characterization of aerosol particles and cloud water during HCCT 2010 (2015)
    Copernicus
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    Publication Date: 2015-08-11
    Description: Trace metal characterization of aerosol particles and cloud water during HCCT 2010 Atmospheric Chemistry and Physics, 15, 8751-8765, 2015 Author(s): K. W. Fomba, D. van Pinxteren, K. Müller, Y. Iinuma, T. Lee, J. L. Collett Jr., and H. Herrmann Trace metal characterization of bulk and size-resolved aerosol and cloud water samples were performed during the Hill Cap Cloud Thuringia (HCCT) campaign. Cloud water was collected at the top of Mt. Schmücke while aerosol samples were collected at two stations upwind and downwind of Mt. Schmücke. Fourteen trace metals including Ti, V, Fe, Mn, Co, Zn, Ni, Cu, As, Sr, Rb, Pb, Cr, and Se were investigated during four full cloud events (FCEs) that fulfilled the conditions of a continuous air mass flow through the three stations. Aerosol particle trace metal concentrations were found to be lower than those observed in the same region during previous field experiments but were within a similar range to those observed in other rural regions in Europe. Fe and Zn were the most abundant elements with concentration ranges of 0.2–111.6 and 1.1–32.1 ng m −3 , respectively. Fe, Mn, and Ti were mainly found in coarse mode aerosols while Zn, Pb, and As were mostly found in the fine mode. Correlation and enrichment factor analysis of trace metals revealed that trace metals such as Ti and Rb were mostly of crustal origin while trace metals such as Zn, Pb, As, Cr, Ni, V, and Cu were of anthropogenic origin. Trace metals such as Fe and Mn were of mixed origins including crustal and combustion sources. Trace metal cloud water concentration decreased from Ti, Mn, Cr, to Co with average concentrations of 9.18, 5.59, 5.54, and 0.46 μg L −1 , respectively. A non-uniform distribution of soluble Fe, Cu, and Mn was observed across the cloud drop sizes. Soluble Fe and Cu were found mainly in cloud droplets with diameters between 16 and 22 μm, while Mn was found mostly in larger drops greater than 22 μm. Fe(III) was the main form of soluble Fe especially in the small and larger drops with concentrations ranging from 2.2 to 37.1 μg L −1 . In contrast to other studies, Fe(II) was observed mainly in the evening hours, implying its presence was not directly related to photochemical processes. Aerosol–cloud interaction did not lead to a marked increase in soluble trace metal concentrations; rather it led to differences in the chemical composition of the aerosol due to preferential loss of aerosol particles through physical processes including cloud drop deposition to vegetative surfaces.
    Print ISSN: 1680-7316
    Electronic ISSN: 1680-7324
    Topics: Geosciences
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    Known and unknown unknowns: the application of ensemble techniques to uncertainty estimation in satellite remote sensing data (2015)
    Copernicus
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    Publication Date: 2015-08-11
    Description: Known and unknown unknowns: the application of ensemble techniques to uncertainty estimation in satellite remote sensing data Atmospheric Measurement Techniques Discussions, 8, 8509-8562, 2015 Author(s): A. C. Povey and R. G. Grainger This paper discusses a best-practice representation of uncertainty in satellite remote sensing data. An estimate of uncertainty is necessary to make appropriate use of the information conveyed by a measurement. Traditional error propagation quantifies the uncertainty in a measurement due to well-understood perturbations in a measurement and auxiliary data – known, quantified "unknowns". The underconstrained nature of most satellite remote sensing observations requires the use of various approximations and assumptions that produce non-linear systematic errors that are not readily assessed – known, unquantifiable "unknowns". Additional errors result from the inability to resolve all scales of variation in the measured quantity – unknown "unknowns". The latter two categories of error are dominant in underconstrained remote sensing retrievals and the difficulty of their quantification limits the utility of existing uncertainty estimates, degrading confidence in such data. This paper proposes the use of ensemble techniques to present multiple self-consistent realisations of a data set as a means of depicting unquantified uncertainties. These are generated using various systems (different algorithms or forward models) believed to be appropriate to the conditions observed. Benefiting from the experience of the climate modelling community, an ensemble provides a user with a more complete representation of the uncertainty as understood by the data producer and greater freedom to consider different realisations of the data.
    Electronic ISSN: 1867-8610
    Topics: Geosciences
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    Improved stratospheric aerosol extinction profiles from SCIAMACHY: validation and sample results (2015)
    Copernicus
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    Publication Date: 2015-08-11
    Description: Improved stratospheric aerosol extinction profiles from SCIAMACHY: validation and sample results Atmospheric Measurement Techniques Discussions, 8, 8353-8383, 2015 Author(s): C. von Savigny, F. Ernst, A. Rozanov, R. Hommel, K.-U. Eichmann, V. Rozanov, J. P. Burrows, and L. W. Thomason Stratospheric aerosol extinction profiles have been retrieved from SCIAMACHY/Envisat measurements of limb-scattered solar radiation. The retrieval is an improved version of an algorithm presented earlier. The retrieved aerosol extinction profiles are compared to co-located aerosol profile measurements with the SAGE II solar occultation instrument at a wavelength of 525 nm. Comparisons were carried out with two versions of the SAGE II data set (version 6.2 and the new version 7.0). In a global average sense the SCIAMACHY and the SAGE II version 7.0 extinction profiles agree to within about 10 % for altitudes above 15 km. Larger relative differences (up to 40 %) are observed at specific latitudes and altitudes. We also find differences between the two SAGE II data versions of up to 40 % for specific latitudes and altitudes. Sample results on the latitudinal and temporal variability of stratospheric aerosol extinction and optical depth during the SCIAMACHY mission period are presented. The results indicate that a series of volcanic eruptions is responsible for the increase in stratospheric aerosol optical depth from 2002 to 2012. Above about 28 km altitude volcanic eruptions are found to have negligible impact in the period 2002 to 2012.
    Electronic ISSN: 1867-8610
    Topics: Geosciences
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    The tropopause inversion layer in baroclinic life cycles experiments: the role of diabatic and mixing processes (2015)
    Copernicus
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    Publication Date: 2015-08-11
    Description: The tropopause inversion layer in baroclinic life cycles experiments: the role of diabatic and mixing processes Atmospheric Chemistry and Physics Discussions, 15, 21495-21537, 2015 Author(s): D. Kunkel, P. Hoor, and V. Wirth Recent studies on the formation of a quasi-permanent layer of enhanced static stability above the thermal tropopause revealed the contributions of dynamical and radiative processes. Dry dynamics lead to the evolution of a tropopause inversion layer (TIL) which is, however, too weak compared to observations and thus diabatic contributions are required. In this study we aim to assess the importance of diabatic as well as mixing processes in the understanding of TIL formation at midlatitudes. The non-hydrostatic model COSMO is applied in an idealized mid-latitude channel configuration to simulate baroclinic life cycles. The effect of individual diabatic, i.e. related to humidity and radiation, and turbulent processes is studied first to estimate the additional contribution of these processes to dry dynamics. In a second step these processes are stepwise included in the model to increase the complexity and finally estimate the relative importance of each process. The results suggest that including turbulence leads to a weaker TIL than in a dry reference simulation. In contrast, the TIL evolves stronger when radiation is included but the temporal occurrence is still comparable to the reference. Using various cloud schemes in the model shows that latent heat release and consecutive increased vertical motions foster an earlier and stronger appearance of the TIL than in all other life cycles. Furthermore, updrafts moisten the upper troposphere and as such increase the radiative effect from water vapor. Particularly, this process becomes more relevant for maintaining the TIL during later stages of the life cycles. Increased convergence of the vertical wind induced by updrafts and by propagating and potentially dissipating inertia-gravity waves further contributes to the enhanced stability of the lower stratosphere. Furthermore, radiative feedback of ice clouds reaching up to the tropopause is identified to potentially further affect the strength of the TIL in the region of the cloud.
    Print ISSN: 1680-7367
    Electronic ISSN: 1680-7375
    Topics: Geosciences
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    AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes (2015)
    Oxford University Press
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    Publication Date: 2015-08-08
    Description: : As sequencing becomes cheaper and more widely available, there is a greater need to quickly and effectively analyze large-scale genomic data. While the functionality of AVIA v1.0, whose implementation was based on ANNOVAR, was comparable with other annotation web servers, AVIA v2.0 represents an enhanced web-based server that extends genomic annotations to cell-specific transcripts and protein-level functional annotations. With AVIA’s improved interface, users can better visualize their data, perform comprehensive searches and categorize both coding and non-coding variants. Availability and implementation : AVIA is freely available through the web at http://avia.abcc.ncifcrf.gov . Contact : Hue.Vuong@fnlcr.nih.gov Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
    Published by Oxford University Press
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    MultiMeta: an R package for meta-analyzing multi-phenotype genome-wide association studies (2015)
    Oxford University Press
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    Publication Date: 2015-08-08
    Description: : As new methods for multivariate analysis of genome wide association studies become available, it is important to be able to combine results from different cohorts in a meta-analysis. The R package MultiMeta provides an implementation of the inverse-variance-based method for meta-analysis, generalized to an n -dimensional setting. Availability and implementation: The R package MultiMeta can be downloaded from CRAN. Contact: dragana.vuckovic@burlo.trieste.it ; vi1@sanger.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
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    Impact of model developments on present and future simulations of permafrost in a global land-surface model (2015)
    Copernicus
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    Publication Date: 2015-08-08
    Description: Impact of model developments on present and future simulations of permafrost in a global land-surface model The Cryosphere, 9, 1505-1521, 2015 Author(s): S. E. Chadburn, E. J. Burke, R. L. H. Essery, J. Boike, M. Langer, M. Heikenfeld, P. M. Cox, and P. Friedlingstein There is a large amount of organic carbon stored in permafrost in the northern high latitudes, which may become vulnerable to microbial decomposition under future climate warming. In order to estimate this potential carbon–climate feedback it is necessary to correctly simulate the physical dynamics of permafrost within global Earth system models (ESMs) and to determine the rate at which it will thaw. Additional new processes within JULES, the land-surface scheme of the UK ESM (UKESM), include a representation of organic soils, moss and bedrock and a modification to the snow scheme; the sensitivity of permafrost to these new developments is investigated in this study. The impact of a higher vertical soil resolution and deeper soil column is also considered. Evaluation against a large group of sites shows the annual cycle of soil temperatures is approximately 25 % too large in the standard JULES version, but this error is corrected by the model improvements, in particular by deeper soil, organic soils, moss and the modified snow scheme. A comparison with active layer monitoring sites shows that the active layer is on average just over 1 m too deep in the standard model version, and this bias is reduced by 70 cm in the improved version. Increasing the soil vertical resolution allows the full range of active layer depths to be simulated; by contrast, with a poorly resolved soil at least 50 % of the permafrost area has a maximum thaw depth at the centre of the bottom soil layer. Thus all the model modifications are seen to improve the permafrost simulations. Historical permafrost area corresponds fairly well to observations in all simulations, covering an area between 14 and 19 million km 2 . Simulations under two future climate scenarios show a reduced sensitivity of permafrost degradation to temperature, with the near-surface permafrost loss per degree of warming reduced from 1.5 million km 2 °C −1 in the standard version of JULES to between 1.1 and 1.2 million km 2 °C −1 in the new model version. However, the near-surface permafrost area is still projected to approximately half by the end of the 21st century under the RCP8.5 scenario.
    Print ISSN: 1994-0416
    Electronic ISSN: 1994-0424
    Topics: Geography , Geosciences
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    Numerical simulations of the Cordilleran ice sheet through the last glacial cycle (2015)
    Copernicus
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    Publication Date: 2015-08-08
    Description: Numerical simulations of the Cordilleran ice sheet through the last glacial cycle The Cryosphere Discussions, 9, 4147-4203, 2015 Author(s): J. Seguinot, I. Rogozhina, A. P. Stroeven, M. Margold, and J. Kleman Despite more than a century of geological observations, the Cordilleran ice sheet of North America remains poorly understood in terms of its former extent, volume and dynamics. Although geomorphological evidence is abundant, its complexity is such that whole ice-sheet reconstructions of advance and retreat patterns are lacking. Here we use a numerical ice sheet model calibrated against field-based evidence to attempt a quantitative reconstruction of the Cordilleran ice sheet history through the last glacial cycle. A series of simulations is driven by time-dependent temperature offsets from six proxy records located around the globe. Although this approach reveals large variations in model response to evolving climate forcing, all simulations produce two major glaciations during marine oxygen isotope stages 4 (61.9–56.5 ka) and 2 (23.2–16.8 ka). The timing of glaciation is better reproduced using temperature reconstructions from Greenland and Antarctic ice cores than from regional oceanic sediment cores. During most of the last glacial cycle, the modelled ice cover is discontinuous and restricted to high mountain areas. However, widespread precipitation over the Skeena Mountains favours the persistence of a central ice dome throughout the glacial cycle. It acts as a nucleation centre before the Last Glacial Maximum and hosts the last remains of Cordilleran ice until the middle Holocene (6.6–6.2 ka).
    Print ISSN: 1994-0432
    Electronic ISSN: 1994-0440
    Topics: Geography , Geosciences
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    Stimulated Brillouin scattering during electron gyro-harmonic heating at EISCAT (2015)
    Copernicus
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    Publication Date: 2015-08-12
    Description: Stimulated Brillouin scattering during electron gyro-harmonic heating at EISCAT Annales Geophysicae, 33, 983-990, 2015 Author(s): H. Y. Fu, W. A. Scales, P. A. Bernhardt, S. J. Briczinski, M. J. Kosch, A. Senior, M. T. Rietveld, T. K. Yeoman, and J. M. Ruohoniemi Observations of secondary radiation, stimulated electromagnetic emission (SEE), produced during ionospheric modification experiments using ground-based, high-power, high-frequency (HF) radio waves are considered. The High Frequency Active Auroral Research Program (HAARP) facility is capable of generating narrowband SEE in the form of stimulated Brillouin scatter (SBS) and stimulated ion Bernstein scatter (SIBS) in the SEE spectrum. Such narrowband SEE spectral lines have not been reported using the European Incoherent Scatter (EISCAT) heater facility before. This work reports the first EISCAT results of narrowband SEE spectra and compares them to SEE previously observed at HAARP during electron gyro-harmonic heating. An analysis of experimental SEE data shows observations of emission lines within 100 Hz of the pump frequency, interpreted as SBS, during the 2012 July EISCAT campaign. Experimental results indicate that SBS strengthens as the pump frequency approaches the third electron gyro-harmonic. Also, for different heater antenna beam angles, the CUTLASS radar backscatter induced by HF radio pumping is suppressed near electron gyro-harmonics, whereas electron temperature enhancement weakens as measured by EISCAT/UHF radar. The main features of these new narrowband EISCAT observations are generally consistent with previous SBS measurements at HAARP.
    Print ISSN: 0992-7689
    Electronic ISSN: 1432-0576
    Topics: Geosciences , Physics
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    Optimizing the impact of temperature on bio-hydrogen production from food waste and its derivatives under no pH control using statistical modelling (2015)
    Copernicus
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    Publication Date: 2015-08-12
    Description: Optimizing the impact of temperature on bio-hydrogen production from food waste and its derivatives under no pH control using statistical modelling Biogeosciences Discussions, 12, 12823-12850, 2015 Author(s): A. Sattar, C. Arslan, C. Ji, S. Sattar, K. Yousaf, and S. Hashim The effect of temperature on bio-hydrogen production by co-digestion of sewerage sludge with food waste and its two derivatives, i.e. noodle waste and rice waste, was investigated by statistical modelling. Experimental results showed that increasing temperature from mesophilic (37 °C) to thermophilic (55 °C) was an effective mean for increasing bio-hydrogen production from food waste and noodle waste, but it caused a negative impact on bio-hydrogen production from rice waste. The maximum cumulative bio-hydrogen production of 650 mL was obtained from noodle waste under mesophilic temperature condition. Most of the production was observed during 48 h of incubation that continued till 72 h of incubation, and a decline in pH during this interval was 4.3 and 4.4 from a starting value of 7 under mesophilic and thermophilic conditions, respectively. Most of glucose consumption was also observed during 72 h of incubation and the maximum consumption was observed during the first 24 h, which was the same duration where the maximum pH drop occurred. The maximum hydrogen yields of 82.47 mL VS −1 , 131.38 mL COD −1 , and 44.90 mL glucose −1 were obtained from mesophilic food waste, thermophilic noodle waste and mesophilic rice waste respectively. The production of volatile fatty acids increased with an increase in time and temperature from food waste and noodle waste reactors whereas it decreased with temperature in rice waste reactors. The statistical modelling returned good results with high values of coefficient of determination ( R 2 ) for each waste type when it was opted for the study of cumulative hydrogen production, glucose consumption and volatile fatty acid production. The 3-D response surface plots developed by the statistical models helped a lot in developing better understanding of the impact of temperature and incubation time.
    Print ISSN: 1810-6277
    Electronic ISSN: 1810-6285
    Topics: Biology , Geosciences
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    Characterization and source apportionment of organic aerosol using offline aerosol mass spectrometry (2015)
    Copernicus
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    Publication Date: 2015-08-12
    Description: Characterization and source apportionment of organic aerosol using offline aerosol mass spectrometry Atmospheric Measurement Techniques Discussions, 8, 8599-8644, 2015 Author(s): K. R. Daellenbach, C. Bozzetti, A. Křepelová, F. Canonaco, R. Wolf, P. Zotter, P. Fermo, M. Crippa, J. G. Slowik, Y. Sosedova, Y. Zhang, R.-J. Huang, L. Poulain, S. Szidat, U. Baltensperger, A. S. H. Prévôt, and I. El Haddad Field deployments of the Aerodyne Aerosol Mass Spectrometer (AMS) have significantly advanced real-time measurements and source apportionment of non-refractory particulate matter. However, the cost and complex maintenance requirements of the AMS make impractical its deployment at sufficient sites to determine regional characteristics. Furthermore, the negligible transmission efficiency of the AMS inlet for supermicron particles significantly limits the characterization of their chemical nature and contributing sources. In this study, we utilize the AMS to characterize the water-soluble organic fingerprint of ambient particles collected onto conventional quartz filters, which are routinely sampled at many air quality sites. The method was applied to 256 particulate matter (PM) filter samples (PM 1 , PM 2.5 , PM 10 ) collected at 16 urban and rural sites during summer and winter. We show that the results obtained by the present technique compare well with those from co-located online measurements, e.g. AMS or Aerosol Chemical Speciation Monitor (ACSM). The bulk recoveries of organic aerosol (60–91 %) achieved using this technique, together with low detection limits (0.8 μg of organic aerosol on the analyzed filter fraction) allow its application to environmental samples. We will discuss the recovery variability of individual hydrocarbon, oxygen containing and other ions. The performance of such data in source apportionment is assessed in comparison to ACSM data. Recoveries of organic components related to different sources as traffic, wood burning and secondary organic aerosol are presented. This technique, while subjected to the limitations inherent to filter-based measurements (e.g. filter artifacts and limited time resolution) may be used to enhance the AMS capabilities in measuring size-fractionated, spatially-resolved long-term datasets.
    Electronic ISSN: 1867-8610
    Topics: Geosciences
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    Cover Page (2015)
    Oxford University Press
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    Publication Date: 2015-08-09
    Print ISSN: 0022-0744
    Electronic ISSN: 1477-9986
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Published by Oxford University Press on behalf of The Japanese Electron Microscopy Society.
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    Subscription Page (2015)
    Oxford University Press
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    Publication Date: 2015-08-09
    Print ISSN: 0022-0744
    Electronic ISSN: 1477-9986
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
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    Recent advancements in structured-illumination microscopy toward live-cell imaging (2015)
    Oxford University Press
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    Publication Date: 2015-08-09
    Description: Fluorescence microscopy allows us to observe fluorescently labeled molecules in diverse biological processes and organelle structures within living cells. However, the diffraction limit restricts its spatial resolution to about half of its wavelength, limiting the capability of biological observation at the molecular level. Structured-illumination microscopy (SIM), a type of super-resolution microscopy, doubles the spatial resolution in all three dimensions by illuminating the sample with a patterned excitation light, followed by computer reconstruction. SIM uses a relatively low illumination power compared with other methods of super-resolution microscopy and is easily available for multicolor imaging. SIM has great potential for meeting the requirements of live-cell imaging. Recent developments in diverse types of SIM have achieved higher spatial (~50 nm lateral) and temporal (~100 Hz) resolutions. Here, we review recent advancements in SIM and discuss its application in noninvasive live-cell imaging.
    Print ISSN: 0022-0744
    Electronic ISSN: 1477-9986
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
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    STED microscopy--super-resolution bio-imaging utilizing a stimulated emission depletion (2015)
    Oxford University Press
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    Publication Date: 2015-08-09
    Description: One of the most popular super-resolution microscopies that breaks the diffraction barrier is stimulated emission depletion (STED) microscopy. As the optical set-up of STED microscopy is based on a laser scanning microscopy (LSM) system, it potentially has several merits of LSM like confocal or two-photon excitation LSM. In this article, we first describe the principles of STED microscopy and then describe the features of our newly developed two-photon excitation STED microscopy. On the basis of our recent results and those of other researchers, we conclude by discussing future research and new technologies in this field.
    Print ISSN: 0022-0744
    Electronic ISSN: 1477-9986
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
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    For Microscopy special feature on 'super resolution microscopy' (2015)
    Oxford University Press
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    Publication Date: 2015-08-09
    Print ISSN: 0022-0744
    Electronic ISSN: 1477-9986
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
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    Ultrathin sectioning with DUV-pulsed laser ablation: development of a laser ablation nano tome (2015)
    Oxford University Press
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    Publication Date: 2015-08-09
    Description: The electrically automated ultrathin sectioning apparatus, which has been developed in recent years, can produce consecutive ultrathin sections with a diamond knife and a gallium ion beam. These newly developed apparatuses, however, have several shortcomings, such as the limited block cutting area, thermal damage to the sample by the focused ion beam and a sample electronic charge. To overcome these faults and for easier scanning electron microscopy three-dimensional fine structural reconstruction, we have developed a new cutting method using a deep ultraviolet laser, which we have named the ‘LANTome (Light Ablation Nanotome)’. Using this method, we confirmed the widening of sectioning areas, shortening of the sectioning time, automatic smoothing of rough surfaces, no sample electronic charge and minimal heat effects on the sample tissue, such as thermal denaturation.
    Print ISSN: 0022-0744
    Electronic ISSN: 1477-9986
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
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    A guide to use photocontrollable fluorescent proteins and synthetic smart fluorophores for nanoscopy (2015)
    Oxford University Press
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    Publication Date: 2015-08-09
    Description: Recent advances in nanoscopy, which breaks the diffraction barrier and can visualize structures smaller than the diffraction limit in cells, have encouraged biologists to investigate cellular processes at molecular resolution. Since nanoscopy depends not only on special optics but also on ‘smart’ photophysical properties of photocontrollable fluorescent probes, including photoactivatability, photoswitchability and repeated blinking, it is important for biologists to understand the advantages and disadvantages of fluorescent probes and to choose appropriate ones for their specific requirements. Here, we summarize the characteristics of currently available fluorescent probes based on both proteins and synthetic compounds applicable to nanoscopy and provide a guideline for selecting optimal probes for specific applications.
    Print ISSN: 0022-0744
    Electronic ISSN: 1477-9986
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
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    Aberrations and adaptive optics in super-resolution microscopy (2015)
    Oxford University Press
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    Publication Date: 2015-08-09
    Description: As one of the most powerful tools in the biological investigation of cellular structures and dynamic processes, fluorescence microscopy has undergone extraordinary developments in the past decades. The advent of super-resolution techniques has enabled fluorescence microscopy – or rather nanoscopy – to achieve nanoscale resolution in living specimens and unravelled the interior of cells with unprecedented detail. The methods employed in this expanding field of microscopy, however, are especially prone to the detrimental effects of optical aberrations. In this review, we discuss how super-resolution microscopy techniques based upon single-molecule switching, stimulated emission depletion and structured illumination each suffer from aberrations in different ways that are dependent upon intrinsic technical aspects. We discuss the use of adaptive optics as an effective means to overcome this problem.
    Print ISSN: 0022-0744
    Electronic ISSN: 1477-9986
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
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    Chemical abundances in the PN Wray16-423 in the Sagittarius dwarf spheroidal galaxy: constraining the dust composition (2015)
    Oxford University Press
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    Publication Date: 2015-08-12
    Description: We performed a detailed analysis of elemental abundances, dust features, and polycyclic aromatic hydrocarbons (PAHs) in the C-rich planetary nebula (PN) Wray16-423 in the Sagittarius dwarf spheroidal galaxy, based on a unique data set taken from the Subaru/HDS, MPG/ESO FEROS, HST /WFPC2, and Spitzer /IRS. We performed the first measurements of Kr, Fe, and recombination O abundance in this PN. The extremely small [Fe/H] implies that most Fe atoms are in the solid phase, considering into account the abundance of [Ar/H]. The Spitzer /IRS spectrum displays broad 16–24 μm and 30 μm features, as well as PAH bands at 6–9 and 10–14 μm. The unidentified broad 16–24 μm feature may not be related to iron sulphide (FeS), amorphous silicate, or PAHs. Using the spectral energy distribution model, we derived the luminosity and effective temperature of the central star, and the gas and dust masses. The observed elemental abundances and derived gas mass are in good agreement with asymptotic giant branch nucleosynthesis models for an initial mass of 1.90 M and a metallicity of Z  = 0.004. We infer that respectively about 80, 50, and 90 per cent of the Mg, S, and Fe atoms are in the solid phase. We also assessed the maximum possible magnesium sulphide (MgS) and iron-rich sulphide (Fe50S) masses and tested whether these species can produce the band flux of the observed 30 μm feature. Depending on what fraction of the sulphur is in sulphide molecules such as CS, we conclude that MgS and Fe50S could be possible carriers of the 30 μm feature in this PN.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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    Evolution of the H {beta} + [O III] and [O II] luminosity functions and the [O II] star formation history of the Universe up to z ~ 5 from HiZELS (2015)
    Oxford University Press
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    Publication Date: 2015-08-12
    Description: We investigate the evolution of the H β + [O iii ] and [O ii ] luminosity functions from z  ~ 0.8 to ~5 in four redshift slices per emission line using data from the High- z Emission Line Survey (HiZELS). This is the first time that the H β + [O iii ] and [O ii ] luminosity functions have been studied at these redshifts in a self-consistent analysis. This is also the largest sample of [O ii ] and H β + [O iii ] emitters (3475 and 3298 emitters, respectively) in this redshift range, with large comoving volumes ~1  x  10 6  Mpc –3 in two independent volumes (COSMOS and UDS), greatly reducing the effects of cosmic variance. The emitters were selected by a combination of photometric redshift and colour–colour selections, as well as spectroscopic follow-up, including recent spectroscopic observations using DEIMOS and MOSFIRE on the Keck Telescopes and FMOS on Subaru. We find a strong increase in L * and a decrease in * for both H β + [O iii ] and [O ii ] emitters. We derive the [O ii ] star formation history of the Universe since z  ~ 5 and find that the cosmic star formation rate density (SFRD) rises from z  ~ 5 to ~3 and then drops towards z  ~ 0. We also find that our star formation history is able to reproduce the evolution of the stellar mass density up to z  ~ 5 based only on a single tracer of star formation. When comparing the H β + [O iii ] SFRDs to the [O ii ] and H α SFRD measurements in the literature, we find that there is a remarkable agreement, suggesting that the H β + [O iii ] sample is dominated by star-forming galaxies at high- z rather than AGNs.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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    Smoothed particle hydrodynamics simulations of gas and dust mixtures (2015)
    Oxford University Press
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    Publication Date: 2015-08-12
    Description: We present a ‘two-fluid’ implementation of dust in smoothed particle hydrodynamics (SPH) in the test particle limit. The scheme is able to handle both short and long stopping times and reproduces the short friction time limit, which is not properly handled in other implementations. We apply novel tests to verify its accuracy and limitations, including multidimensional tests that have not been previously applied to the drag-coupled dust problem and which are particularly relevant to self-gravitating protoplanetary discs. Our tests demonstrate several key requirements for accurate simulations of gas–dust mixtures. First, in standard SPH particle jitter can degrade the dust solution, even when the gas density is well reproduced. The use of integral gradients, a Wendland kernel and a large number of neighbours can control this, albeit at a greater computational cost. Secondly, when it is necessary to limit the artificial viscosity we recommend using the Cullen & Dehnen switch, since the alternative, using α ~ 0.1, can generate a large velocity noise up to v   0.3 c s in the dust particles. Thirdly, we find that an accurate dust density estimate requires 〉400 neighbours, since, unlike the gas, the dust particles do not feel regularization forces. This density noise applies to all particle-based two-fluid implementations of dust, irrespective of the hydro solver and could lead to numerically induced fragmentation. Although our tests show accurate dusty gas simulations are possible, care must be taken to minimize the contribution from numerical noise.
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    A two-parameter matching scheme for massive galaxies and dark matter haloes (2015)
    Oxford University Press
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    Publication Date: 2015-08-12
    Description: Halo abundance matching has been used to construct a one-parameter mapping between galaxies and dark matter haloes by assuming that halo mass and galaxy luminosity (or stellar mass) are monotonically related. While this approach has been reasonably successful, it is known that galaxies must be described by at least two parameters, as can be seen from the two-parameter Fundamental Plane on which massive early-type galaxies lie. In this paper, we derive a connection between initial dark matter density perturbations in the early Universe and present-day virialized dark matter haloes by assuming simple spherical collapse combined with conservation of mass and energy. We find that z  = 0 halo concentration, or alternatively the inner slope of the halo density profile α, is monotonically and positively correlated with the collapse redshift of the halo. This is qualitatively similar to the findings of some previous works based on numerical simulations, with which we compare our results. We then describe how the halo mass and concentration (or inner slope α) can be used as two halo parameters in combination with two parameters of early-type galaxies to create an improved abundance matching scheme. In a forthcoming paper, we will show an application of this scheme to galaxies on the Fundamental Plane.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
    Published by Oxford University Press
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    Internal alignments of red versus blue discs in dark matter haloes (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-12
    Description: Large surveys have shown that red galaxies are preferentially aligned with their haloes, while blue galaxies have a more isotropic distribution. Since haloes generally align with their filaments, this introduces a bias in the measurement of the cosmic shear from weak lensing. It is therefore vitally important to understand why this difference arises. We explore the stability of different disc orientations within triaxial haloes. We show that, in the absence of gas, the disc orientation is most stable when its spin is along the minor axis of the halo. Instead when gas cools on to a disc, it is able to form in almost arbitrary orientation, including off the main planes of the halo (but avoiding an orientation perpendicular to the halo's intermediate axis). Substructure helps gasless galaxies reach alignment with the halo faster, but has less effect on galaxies when gas is cooling on to the disc. Our results provide a novel and natural interpretation for why red, gas poor galaxies are preferentially aligned with their halo, while blue, star-forming, galaxies have nearly random orientations, without requiring a connection between galaxies’ current star formation rate and their merger history.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
    Published by Oxford University Press
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  • 98
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    Statistical detection and modeling of the over-dispersion of winter storm occurrence (2015)
    Copernicus
    Details
    Publication Date: 2015-08-12
    Description: Statistical detection and modeling of the over-dispersion of winter storm occurrence Natural Hazards and Earth System Science, 15, 1757-1761, 2015 Author(s): M. Raschke In this communication, I improve the detection and modeling of the over-dispersion of winter storm occurrence. For this purpose, the generalized Poisson distribution and the Bayesian information criterion are introduced; the latter is used for statistical model selection. Moreover, I replace the frequently used dispersion statistics by an over-dispersion parameter which does not depend on the considered return period of storm events. These models and methods are applied in order to properly detect the over-dispersion in winter storm data for Germany, carrying out a joint estimation of the distribution models for different samples.
    Print ISSN: 1561-8633
    Electronic ISSN: 1684-9981
    Topics: Geography , Geosciences
    Published by Copernicus on behalf of The European Geosciences Union (EGU).
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  • 99
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    Collision and annihilation of relative equilibrium points around asteroids with a changing parameter (2015)
    Oxford University Press
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    Publication Date: 2015-08-09
    Description: In this work, we investigate the bifurcations of relative equilibria in the gravitational potential of asteroids. A theorem concerning a conserved quantity, which is about the eigenvalues and number of relative equilibria, is presented and proved. The conserved quantity can restrict the number of non-degenerate equilibria in the gravitational potential of an asteroid. It is concluded that the number of non-degenerate equilibria in the gravitational field of an asteroid varies in pairs and is an odd number. In addition, the conserved quantity can also restrict the kinds of bifurcations of relative equilibria in the gravitational potential of an asteroid when the parameter varies. Furthermore, studies have shown that there exist transcritical bifurcations, quasi-transcritical bifurcations, saddle–node bifurcations, saddle–saddle bifurcations, binary saddle–node bifurcations, supercritical pitchfork bifurcations, and subcritical pitchfork bifurcations for the relative equilibria in the gravitational potential of asteroids. It is found that for the asteroid 216 Kleopatra, when the rotation period varies as a parameter, the number of relative equilibria changes from 7 to 5 to 3 to 1, and the bifurcations for the relative equilibria are saddle–node bifurcations and saddle–saddle bifurcations.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
    Published by Oxford University Press
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    Herschel-ATLAS: the connection between star formation and AGN activity in radio-loud and radio-quiet active galaxies (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-09
    Description: We examine the relationship between star formation and active galactic nuclei (AGN) activity by constructing matched samples of local (0 〈  z  〈 0.6) radio-loud and radio-quiet AGN in the Herschel -Astrophysical Terahertz Large Area Survey fields. Radio-loud AGN are classified as high-excitation and low-excitation radio galaxies using their emission lines and WISE 22-μm luminosity. AGN accretion and jet powers in these active galaxies are traced by [O iii ] emission-line and radio luminosity, respectively. Star formation rates (SFRs) and specific star formation rates (SSFRs) were derived using Herschel 250-μm luminosity and stellar mass measurements from the Sloan Digital Sky Survey–Max Planck Institute for Astrophysics-John Hopkins University catalogue. In the past, star formation studies of AGN have mostly focused on high-redshift sources to observe the thermal dust emission that peaks in the far-infrared, which limited the samples to powerful objects. However, with Herschel we can expand this to low redshifts. Our stacking analyses show that SFRs and SSFRs of both radio-loud and radio-quiet AGN increase with increasing AGN power but that radio-loud AGN tend to have lower SFR. Additionally, radio-quiet AGN are found to have approximately an order of magnitude higher SSFRs than radio-loud AGN for a given level of AGN power. The difference between the star formation properties of radio-loud and -quiet AGN is also seen in samples matched in stellar mass.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
    Published by Oxford University Press
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