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  • Nature Publishing Group (NPG)
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  • 2010-2014  (10,069)
  • 1970-1974
  • 1955-1959
  • 2013  (10,069)
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  • 2010-2014  (10,069)
  • 1970-1974
  • 1955-1959
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  • 1
    Publication Date: 2022-11-29
    Description: Living microorganisms inhabit every environment of the biosphere but only in the last decades their importance governing biochemical cycles in deep sediments has been widely recognized. Most investigations have been accomplished in the marine realm whereas there is a clear paucity of comparable studies in lacustrine sediments. One of the main challenges is to define geomicrobiological proxies that can be used to identify different microbial signals in the sediments. Laguna Potrok Aike, a maar lake located in Southeastern Patagonia, has an annually not stratifying cold water column with temperatures ranging between 4 and 10 °C, and most probably an anoxic water/sediment interface. These unusual features make it a peculiar and interesting site for geomicrobiological studies. Living microbial activity within the sediments was inspected by the first time in a sedimentary core retrieved during an ICDP-sponsored drilling operation. The main goals to study this cold subsaline environment were to characterize the living microbial consortium; to detect early diagenetic signals triggered by active microbes; and to investigate plausible links between climate and microbial populations. Results from a meter long gravity core suggest that microbial activity in lacustrine sediments can be sustained deeper than previously thought due to their adaptation to both changing temperature and oxygen availability. A multi-proxy study of the same core allowed defining past water column conditions and further microbial reworking of the organic fraction within the sediments. Methane content shows a gradual increase with depth as a result of the fermentation of methylated substrates, first methanogenic pathway to take place in the shallow subsurface of freshwater and subsaline environments. Statistical analyses of DGGE microbial diversity profiles indicate four clusters for Bacteria reflecting layered communities linked to the oxidant type whereas three clusters characterize Archaea communities that can be linked to both denitrifiers and methanogens. Independent sedimentary and biological proxies suggest that organic matter production and/or preservation have been lower during the Medieval Climate Anomaly (MCA) coinciding with a low microbial colonization of the sediments. Conversely, a reversed trend with higher organic matter content and substantial microbial activity characterizes the sediments deposited during the Little Ice Age (LIA). Thus, the initial sediments deposited during distinctive time intervals under contrasting environmental conditions have to be taken into account to understand their impact on the development of microbial communities throughout the sediments and their further imprint on early diagenetic signals.
    Type: info:eu-repo/semantics/workingPaper
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  • 2
    Publication Date: 2022-11-29
    Description: Authigenic minerals can form in the water column and sediments of lakes, either abiotically or mediated by biological activity. Such minerals have been used as paleosalinity and paleoproductivity indicators and reflect trophic state and early diagenetic conditions. They are also considered potential indicators of past and perhaps ongoing microbial activity within sediments. Authigenic concretions, including vivianite, were described in late glacial sediments of Laguna Potrok Aike, a maar lake in southernmost Argentina. Occurrence of iron phosphate implies specific phosphorus sorption behavior and a reducing environment, with methane present. Because organic matter content in these sediments was generally low during glacial times, there must have been alternative sources of phosphorus and biogenic methane. Identifying these sources can help define past trophic state of the lake and diagenetic processes in the sediments. We used scanning electron microscopy, phosphorus speciation in bulk sediment, pore water analyses, in situ ATP measurements, microbial cell counts, and measurements of methane content and its carbon isotope composition (d13C CH4) to identify components of and processes in the sediment. The multiple approaches indicated that volcanic materials in the catchment are important suppliers of iron, sulfur and phosphorus. These elements influence primary productivity and play a role in microbial metabolism during early diagenesis. Authigenic processes led to the formation of pyrite framboids and revealed sulfate reduction. Anaerobic oxidation of methane and shifts in pore water ion concentration indicated microbial influence with depth. This study documents the presence of active microbes within the sediments and their relationship to changing environmental conditions. It also illustrates the substantial role played by microbes in the formation of Laguna Potrok Aike concretions. Thus, authigenic minerals can be used as biosignatures in these late Pleistocene maar sediments.
    Type: info:eu-repo/semantics/workingPaper
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  • 3
    Publication Date: 2013-12-18
    Description: How biological systems generate reproducible patterns with high precision is a central question in science. The shoot apical meristem (SAM), a specialized tissue producing plant aerial organs, is a developmental system of choice to address this question. Organs are periodically initiated at the SAM at specific spatial positions and this spatiotemporal pattern defines phyllotaxis. Accumulation of the plant hormone auxin triggers organ initiation, whereas auxin depletion around organs generates inhibitory fields that are thought to be sufficient to maintain these patterns and their dynamics. Here we show that another type of hormone-based inhibitory fields, generated directly downstream of auxin by intercellular movement of the cytokinin signalling inhibitor ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6 (AHP6), is involved in regulating phyllotactic patterns. We demonstrate that AHP6-based fields establish patterns of cytokinin signalling in the meristem that contribute to the robustness of phyllotaxis by imposing a temporal sequence on organ initiation. Our findings indicate that not one but two distinct hormone-based fields may be required for achieving temporal precision during formation of reiterative structures at the SAM, thus indicating an original mechanism for providing robustness to a dynamic developmental system.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Besnard, Fabrice -- Refahi, Yassin -- Morin, Valerie -- Marteaux, Benjamin -- Brunoud, Geraldine -- Chambrier, Pierre -- Rozier, Frederique -- Mirabet, Vincent -- Legrand, Jonathan -- Laine, Stephanie -- Thevenon, Emmanuel -- Farcot, Etienne -- Cellier, Coralie -- Das, Pradeep -- Bishopp, Anthony -- Dumas, Renaud -- Parcy, Francois -- Helariutta, Yka -- Boudaoud, Arezki -- Godin, Christophe -- Traas, Jan -- Guedon, Yann -- Vernoux, Teva -- England -- Nature. 2014 Jan 16;505(7483):417-21. doi: 10.1038/nature12791. Epub 2013 Dec 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Laboratoire de Reproduction et Developpement des Plantes, CNRS, INRA, ENS Lyon, UCBL, Universite de Lyon, 69364 Lyon, France [2] IBENS, ENS, 75005 Paris, France (F.B.); UMR CNRS 5534, Universite Claude Bernard Lyon I, Batiment Gregor Mendel, 16 rue Raphael Dubois, 69622 Villeurbanne, France (V.M.); University of Nottingham, University Park, Nottingham NG7 2RD, UK (E.F); University of Nottingham, Sutton Bonington LE12 5RD, UK (A.Bi.). ; Virtual Plants INRIA/CIRAD/INRA Project Team, UMR AGAP, Institut de Biologie Computationelle, 34095 Montpellier, France. ; 1] Laboratoire de Reproduction et Developpement des Plantes, CNRS, INRA, ENS Lyon, UCBL, Universite de Lyon, 69364 Lyon, France [2] IBENS, ENS, 75005 Paris, France (F.B.); UMR CNRS 5534, Universite Claude Bernard Lyon I, Batiment Gregor Mendel, 16 rue Raphael Dubois, 69622 Villeurbanne, France (V.M.); University of Nottingham, University Park, Nottingham NG7 2RD, UK (E.F); University of Nottingham, Sutton Bonington LE12 5RD, UK (A.Bi.). [3]. ; 1] Laboratoire de Reproduction et Developpement des Plantes, CNRS, INRA, ENS Lyon, UCBL, Universite de Lyon, 69364 Lyon, France [2]. ; Laboratoire de Reproduction et Developpement des Plantes, CNRS, INRA, ENS Lyon, UCBL, Universite de Lyon, 69364 Lyon, France. ; 1] Laboratoire de Reproduction et Developpement des Plantes, CNRS, INRA, ENS Lyon, UCBL, Universite de Lyon, 69364 Lyon, France [2] Laboratoire Joliot-Curie, CNRS, ENS Lyon, Universite de Lyon, 69364 Lyon, France. ; 1] Laboratoire de Reproduction et Developpement des Plantes, CNRS, INRA, ENS Lyon, UCBL, Universite de Lyon, 69364 Lyon, France [2] Virtual Plants INRIA/CIRAD/INRA Project Team, UMR AGAP, Institut de Biologie Computationelle, 34095 Montpellier, France [3] Laboratoire Joliot-Curie, CNRS, ENS Lyon, Universite de Lyon, 69364 Lyon, France. ; Laboratoire Physiologie Cellulaire et Vegetale, CEA, CNRS, INRA, UJF, 38041 Grenoble, France. ; 1] Virtual Plants INRIA/CIRAD/INRA Project Team, UMR AGAP, Institut de Biologie Computationelle, 34095 Montpellier, France [2] IBENS, ENS, 75005 Paris, France (F.B.); UMR CNRS 5534, Universite Claude Bernard Lyon I, Batiment Gregor Mendel, 16 rue Raphael Dubois, 69622 Villeurbanne, France (V.M.); University of Nottingham, University Park, Nottingham NG7 2RD, UK (E.F); University of Nottingham, Sutton Bonington LE12 5RD, UK (A.Bi.). ; 1] Institute of Biotechnology/Department of Biosciences, University of Helsinki, FIN-00014, Finland [2] IBENS, ENS, 75005 Paris, France (F.B.); UMR CNRS 5534, Universite Claude Bernard Lyon I, Batiment Gregor Mendel, 16 rue Raphael Dubois, 69622 Villeurbanne, France (V.M.); University of Nottingham, University Park, Nottingham NG7 2RD, UK (E.F); University of Nottingham, Sutton Bonington LE12 5RD, UK (A.Bi.). ; Institute of Biotechnology/Department of Biosciences, University of Helsinki, FIN-00014, Finland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24336201" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/anatomy & histology/cytology/*growth & development/*metabolism ; Arabidopsis Proteins/*metabolism ; *Biological Transport ; Cytokinins/*antagonists & inhibitors/metabolism ; Indoleacetic Acids/metabolism ; Meristem/metabolism ; Plant Growth Regulators/antagonists & inhibitors/metabolism ; Plant Shoots/metabolism ; *Signal Transduction
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2013-12-07
    Description: The objective of science is to advance knowledge, primarily in two interlinked ways: circulating ideas, and defending or criticizing the ideas of others. Peer review acts as the gatekeeper to these mechanisms. Given the increasing concern surrounding the reproducibility of much published research, it is critical to understand whether peer review is intrinsically susceptible to failure, or whether other extrinsic factors are responsible that distort scientists' decisions. Here we show that even when scientists are motivated to promote the truth, their behaviour may be influenced, and even dominated, by information gleaned from their peers' behaviour, rather than by their personal dispositions. This phenomenon, known as herding, subjects the scientific community to an inherent risk of converging on an incorrect answer and raises the possibility that, under certain conditions, science may not be self-correcting. We further demonstrate that exercising some subjectivity in reviewer decisions, which serves to curb the herding process, can be beneficial for the scientific community in processing available information to estimate truth more accurately. By examining the impact of different models of reviewer decisions on the dynamic process of publication, and thereby on eventual aggregation of knowledge, we provide a new perspective on the ongoing discussion of how the peer-review process may be improved.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Park, In-Uck -- Peacey, Mike W -- Munafo, Marcus R -- MC_UU_12013/6/Medical Research Council/United Kingdom -- Cancer Research UK/United Kingdom -- British Heart Foundation/United Kingdom -- Medical Research Council/United Kingdom -- England -- Nature. 2014 Feb 6;506(7486):93-6. doi: 10.1038/nature12786. Epub 2013 Dec 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Department of Economics, University of Bristol, Bristol BS8 1TN, UK [2] Department of Economics, Sungkyunkwan University, Seoul 110-745, South Korea. ; 1] Department of Economics, University of Bristol, Bristol BS8 1TN, UK [2] Department of Economics, University of Bath, Bath BA2 7AY, UK. ; 1] MRC Integrative Epidemiology Unit (IEU), University of Bristol, Bristol BS8 1BN, UK [2] UK Centre for Tobacco and Alcohol Studies, University of Bristol, Bristol BS8 1TU, UK [3] School of Experimental Psychology, University of Bristol, Bristol BS8 1TU, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24305052" target="_blank"〉PubMed〈/a〉
    Keywords: *Bias (Epidemiology) ; *Decision Making ; Empirical Research ; Humans ; *Models, Theoretical ; Peer Group ; *Peer Review, Research/standards ; Research Personnel/*psychology/standards
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
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  • 5
    Publication Date: 2013-12-10
    Description: Evolution drives, and is driven by, demography. A genotype moulds its phenotype's age patterns of mortality and fertility in an environment; these two patterns in turn determine the genotype's fitness in that environment. Hence, to understand the evolution of ageing, age patterns of mortality and reproduction need to be compared for species across the tree of life. However, few studies have done so and only for a limited range of taxa. Here we contrast standardized patterns over age for 11 mammals, 12 other vertebrates, 10 invertebrates, 12 vascular plants and a green alga. Although it has been predicted that evolution should inevitably lead to increasing mortality and declining fertility with age after maturity, there is great variation among these species, including increasing, constant, decreasing, humped and bowed trajectories for both long- and short-lived species. This diversity challenges theoreticians to develop broader perspectives on the evolution of ageing and empiricists to study the demography of more species.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157354/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157354/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jones, Owen R -- Scheuerlein, Alexander -- Salguero-Gomez, Roberto -- Camarda, Carlo Giovanni -- Schaible, Ralf -- Casper, Brenda B -- Dahlgren, Johan P -- Ehrlen, Johan -- Garcia, Maria B -- Menges, Eric S -- Quintana-Ascencio, Pedro F -- Caswell, Hal -- Baudisch, Annette -- Vaupel, James W -- P01 AG-031719/AG/NIA NIH HHS/ -- P01 AG031719/AG/NIA NIH HHS/ -- England -- Nature. 2014 Jan 9;505(7482):169-73. doi: 10.1038/nature12789. Epub 2013 Dec 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Max-Planck Odense Center on the Biodemography of Aging, Campusvej 55, 5230 Odense M, Denmark [2] Department of Biology, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark [3]. ; 1] Max Planck Institute for Demographic Research, Konrad-Zuse-Strasse 1, 18057 Rostock, Germany [2]. ; 1] Max Planck Institute for Demographic Research, Konrad-Zuse-Strasse 1, 18057 Rostock, Germany [2] School of Biological Sciences, Centre for Biodiversity and Conservation Science, University of Queensland, Brisbane QLD 4072, Australia. ; Institut National d'Etudes Demographiques, 133 Boulevard Davout, 75980 Paris Cedex 20, France. ; Max Planck Institute for Demographic Research, Konrad-Zuse-Strasse 1, 18057 Rostock, Germany. ; Department of Biology, University of Pennsylvania, 433 South University Avenue, Philadelphia, Pennsylvania 19104-6018, USA. ; 1] Max-Planck Odense Center on the Biodemography of Aging, Campusvej 55, 5230 Odense M, Denmark [2] Department of Biology, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark. ; Department of Ecology, Environment and Plant Sciences, Stockholm University, Lilla Frescativagen 5, 10691 Stockholm, Sweden. ; Pyrenean Institute of Ecology (CSIC), Avenida Montanana 1005, 50059 Zaragoza, Spain. ; Archbold Biological Station, 123 Main Drive, Venus, Florida 33960, USA. ; Department of Biology, University of Central Florida, 4110 Libra Drive, Orlando, Florida 32816-2368, USA. ; 1] Department of Biology, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark [2] Max Planck Institute for Demographic Research, Konrad-Zuse-Strasse 1, 18057 Rostock, Germany [3] Woods Hole Oceanographic Institution, Biology Department MS-34, Woods Hole, Massachusetts 02543 USA [4] Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, PO Box 94248, 1090GE Amsterdam, The Netherlands. ; 1] Max-Planck Odense Center on the Biodemography of Aging, Campusvej 55, 5230 Odense M, Denmark [2] Max Planck Institute for Demographic Research, Konrad-Zuse-Strasse 1, 18057 Rostock, Germany [3] Duke Population Research Institute, Duke University, Durham, North Carolina 27705, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24317695" target="_blank"〉PubMed〈/a〉
    Keywords: Aging/*physiology ; Animals ; Biological Evolution ; Chlorophyta ; Fertility/*physiology ; Longevity/*physiology ; *Phylogeny ; Plants ; Reproduction/physiology
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  • 6
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    Nature Publishing Group (NPG)
    Publication Date: 2013-01-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dusheck, Jennie -- England -- Nature. 2012 Nov 22;491(7425):S50-1.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23320286" target="_blank"〉PubMed〈/a〉
    Keywords: Biomechanical Phenomena ; Biomedical Research/economics/*trends ; Europe ; Humans ; Interdisciplinary Studies/*trends ; *Medical Oncology ; *Neoplasms/drug therapy/mortality/pathology ; *Physics ; United States
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  • 7
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    Nature Publishing Group (NPG)
    Publication Date: 2013-01-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2012 Dec 20;492(7429):311-2.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23281498" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Child ; Child Mortality ; Evidence-Based Medicine/methods ; Global Health/*statistics & numerical data/trends ; Health Care Surveys ; Health Policy/*trends ; *Health Status ; *Health Surveys ; Humans ; Life Expectancy ; Malaria/mortality ; Maternal Mortality
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    Electronic ISSN: 1476-4687
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  • 8
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    Nature Publishing Group (NPG)
    Publication Date: 2013-01-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2012 Dec 20;492(7429):311.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23281497" target="_blank"〉PubMed〈/a〉
    Keywords: 2-Pyridinylmethylsulfinylbenzimidazoles ; Clinical Trials as Topic/statistics & numerical data ; Drug Approval/legislation & jurisprudence ; Drug Industry/economics/ethics/*legislation & jurisprudence ; Drug Prescriptions/standards ; *Freedom ; Humans ; Marketing/*ethics/*legislation & jurisprudence ; Off-Label Use/*ethics/*legislation & jurisprudence ; Patient Advocacy/legislation & jurisprudence ; Reproducibility of Results ; Sodium Oxybate ; United States ; United States Food and Drug Administration/legislation & jurisprudence
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  • 9
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    Nature Publishing Group (NPG)
    Publication Date: 2013-01-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gatenby, Robert -- England -- Nature. 2012 Nov 22;491(7425):S55.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Departments of Radiology andIntegrated Mathematical Oncology at the H. Lee Moffitt CancerCenter in Tampa, Florida, USA.robert.gatenby@moffitt.org〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23320287" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biological Evolution ; Biomedical Research/*methods ; Caves ; Fishes/genetics/physiology ; Humans ; *Models, Biological ; Molecular Biology ; Molecular Targeted Therapy ; *Neoplasms/genetics/metabolism/pathology ; Physics/*methods
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  • 10
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    Nature Publishing Group (NPG)
    Publication Date: 2013-01-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bourzac, Katherine -- England -- Nature. 2012 Nov 22;491(7425):S58-60.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23320289" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antineoplastic Agents/*administration & dosage/adverse effects/*pharmacokinetics ; Cisplatin/adverse effects/pharmacokinetics ; Clinical Trials as Topic ; Doxorubicin/administration & dosage/pharmacokinetics ; Drug Carriers/administration & dosage/*chemistry/*pharmacokinetics ; Drug Resistance, Neoplasm ; Humans ; Leukemia/drug therapy/metabolism ; Logic ; Nanomedicine/*methods ; Nanoparticles/administration & dosage/*chemistry ; Neoplasm Metastasis ; Neoplasms/*drug therapy/genetics ; Pancreatic Neoplasms/drug therapy ; RNA Interference ; RNA, Small Interfering/administration & dosage/genetics/pharmacokinetics ; Robotics ; Substrate Specificity
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