ALBERT

All Library Books, journals and Electronic Records Telegrafenberg

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
Filter
  • Oxford University Press  (15,980)
  • American Society of Hematology  (6,927)
  • American Meteorological Society
  • 2010-2014  (24,900)
  • 2000-2004
  • 1995-1999
  • 2012  (24,900)
Collection
Publisher
Years
  • 2010-2014  (24,900)
  • 2000-2004
  • 1995-1999
Year
  • 1
    Publication Date: 2020-11-26
    Description: So far, the role of appendicularians in the biogeochemical cycling of organic matter has been largely overlooked. Appendicularians represent only a fraction of total mesozooplankton biomass, however these ubiquitous zooplankters have very high filtration and growth rates compared to copepods, and produce numerous fecal pellets and filtering houses contributing to export production by aggregating small marine particles. To study their quantitative impact on biogeochemical flux, we have included this group in the biogeochemical flux model, using a recently developed ecophysiological model. One-dimensional annual simulations of the pelagic ecosystem including appendicularians were conducted with realistic surface forcing for the year 2000, using data from the DyFAMed open ocean station. The appendicularian grazing impact was generally low, but appendicularians increased detritus production by 8% and export production by 55% compared to a simulation without appendicularians. Therefore, current biogeochemical models lacking appendicularians probably under, or misestimate the detritus and export production by omitting the pathway from small-sized plankton to fast sinking detritus. Detritus production and export rates are 60% lower than the estimates from mesotrophic sites, showing that appendicularians’ role is lower but still significant in oligotrophic environments. The simulated annual export at 200 m exceeds sediment trap values by 44%, suggesting an intense degradation during the sinking of appendicularian detritus, supported by observations made at other sites. Thus, degradation and grazing of appendicularian detritus need better quantification if we are to accurately assess the role of appendicularia in export flux.
    Description: EU-FP6 project SESAME GOCE-036949
    Description: Published
    Description: 855-872
    Description: 3.7. Dinamica del clima e dell'oceano
    Description: JCR Journal
    Description: reserved
    Keywords: BFM ; zooplankton ; 03. Hydrosphere::03.01. General::03.01.01. Analytical and numerical modeling ; 03. Hydrosphere::03.01. General::03.01.07. Physical and biogeochemical interactions ; 03. Hydrosphere::03.04. Chemical and biological::03.04.01. Biogeochemical cycles ; 03. Hydrosphere::03.04. Chemical and biological::03.04.04. Ecosystems
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 2
    Publication Date: 2017-04-04
    Description: Crystal-rich lithic clasts occurring in volcanic deposits are key tools to understand processes of storage, cooling, and fractionation of magmas in pre-eruptive volcanic systems. These clasts, indeed, represent snapshots of the magma-chamber/host-rock interface before eruptions and provide information on crystallization, differentiation, and degrees of interaction between magma and wall-rocks. In this study, with the aim to shed light on magma-carbonate interaction and CO2 emission in volcanic areas, we focused on the petrology of cumulate and skarn rocks by using as case study a suite of mafic and calcite-bearing lithic clasts from the Colli Albani Volcanic District. By means of phase relations, bulk rock chemistry, phase compositions, and stable isotope data we have recognized different types of cumulates and skarns. Cumulates containing either clinopyroxene±olivine associated with Cr-bearing spinel or glass+phlogopite have been divided in primitive and differentiated, respectively. Primitive cumulates originate at the interface between a relatively primitive magma and carbonate-bearing rocks and show evidences of olivine instability (i.e. heteradcumulate texture) due to carbonate assimilation. Differentiated cumulates, characterized by Ca-rich olivines, phlogopite, and glass containing calcite, form from a differentiated magma in a system open to CaO-contamination. Skarns has been divided in exoskarns, characterized by xenomorphic texture and abundant calcite, and endoskarns, characterized by hypidiomorphic texture, Ca-Tschermak-rich mineral phases, and interstitial glass. Exoskarns formed by means of solid state reactions in a dolostone protolith whereas endoskarns crystallized at subliquidus temperature from a silicate melt that experienced exoskarns assimilation. Our study evidences that magma-carbonate interaction can not be considered a one step process exhausting just after the formation of skarn shells. Magma and carbonate rocks, when in contact, continuously interact leading to the formation of exoskarns, endoskarns, cumulates (primitive and differentiated ones), and differentiated melts. Finally, by means of oxygen and carbon isotope compositions of calcite in equilibrium with skarns, we demonstrate that carbonate assimilation represents a source of massive CO2 degassing mechanism due to the consumption of calcite and removing of CO2 during the decarbonation process.
    Description: Sapienza Universita' di Roma INGV-DPC [Project V 3.1, Colli Albani].
    Description: Published
    Description: 2307-2332
    Description: 2.3. TTC - Laboratori di chimica e fisica delle rocce
    Description: JCR Journal
    Description: reserved
    Keywords: magma/carbonate interaction ; CO2 degassing ; c umulate and skarn ; Colli Albani ; 04. Solid Earth::04.04. Geology::04.04.05. Mineralogy and petrology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 3
    Publication Date: 2017-04-03
    Description: A global ocean three-dimensional variational data assimilation system was developed with the aim of assimilating along-track sea level anomaly observations, along with in situ observations from bathythermographs and conventional sea stations. All the available altimetric data within the period October 1992–January 2006 were used in this study. The sea level corrections were covariated with vertical profiles of temperature and salinity according to the bivariate definition of the background-error vertical covariances. Sea level anomaly observational error variance was carefully defined as a sum of instrumental, representativeness, observation operator, and mean dynamic topography error variances. The mean dynamic topography was computed from the model long-term mean sea surface height and adjusted through an optimal interpolation scheme to account for observation minus first-guess biases. Results show that the assimilation of sea level anomaly observations improves the model sea surface height skill scores as well as the subsurface temperature and salinity fields. Furthermore, the estimate of the tropical and subtropical surface circulation is clearly improved after assimilating altimetric data. Nonnegligible impacts of the mean dynamic topography used have also been found: compared to a gravimeter-based mean dynamic topography the use of the mean dynamic topography discussed in this paper improves both the consistency with sea level anomaly observations and the verification skill scores of temperature and salinity in the tropical regions. Furthermore, the use of a mean dynamic topography computed from the model long-term sea surface height mean without observation adjustments results in worsened verification skill scores and highlights the benefits of the current approach for deriving the mean dynamic topography.
    Description: European Commission WP4 Fondazione Cassa di Risparmio di Bologna Cnes
    Description: Published
    Description: 738-754
    Description: 3.7. Dinamica del clima e dell'oceano
    Description: 4.6. Oceanografia operativa per la valutazione dei rischi in aree marine
    Description: 5.4. Banche dati di geomagnetismo, aeronomia, clima e ambiente
    Description: JCR Journal
    Description: partially_open
    Keywords: Data assimilation ; Satellite observations ; Ocean models ; Sea level ; In situ observations ; Variational analysis ; 03. Hydrosphere::03.01. General::03.01.01. Analytical and numerical modeling ; 03. Hydrosphere::03.01. General::03.01.03. Global climate models ; 03. Hydrosphere::03.01. General::03.01.04. Ocean data assimilation and reanalysis
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 4
    facet.materialart.
    Unknown
    American Meteorological Society
    Publication Date: 2020-02-24
    Description: An aquaplanet model is used to study the nature of the highly persistent low-frequency waves that have been observed in models forced by zonally symmetric boundary conditions. Using the Hayashi spectral analysis of the extratropical waves, the authors find that a quasi-stationary wave 5 belongs to a wave packet obeying a well-defined dispersion relation with eastward group velocity. The components of the dispersion relation with k ≥ 5 baroclinically convert eddy available potential energy into eddy kinetic energy, whereas those with k 〈 5 are baroclinically neutral. In agreement with Green’s model of baroclinic instability, wave 5 is weakly unstable, and the inverse energy cascade, which had been previously proposed as a main forcing for this type of wave, only acts as a positive feedback on its predominantly baroclinic energetics. The quasi-stationary wave is reinforced by a phase lock to an analogous pattern in the tropical convection, which provides further amplification to the wave. It is also found that the Pedlosky bounds on the phase speed of unstable waves provide guidance in explaining the latitudinal structure of the energy conversion, which is shown to be more enhanced where the zonal westerly surface wind is weaker. The wave’s energy is then trapped in the waveguide created by the upper tropospheric jet stream. In agreement with Green’s theory, as the equator-to-pole SST difference is reduced, the stationary marginally stable component shifts toward higher wavenumbers, while wave 5 becomes neutral and westward propagating. Some properties of the aquaplanet quasi-stationary waves are found to be in interesting agreement with a low frequency wave observed by Salby during December–February in the Southern Hemisphere so that this perspective on low frequency variability, apart from its value in terms of basic geophysical fluid dynamics, might be of specific interest for studying the earth’s atmosphere.
    Description: Published
    Description: 1023–1040.
    Description: JCR Journal
    Description: restricted
    Keywords: Boundary conditions ; 03. Hydrosphere::03.02. Hydrology::03.02.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 5
    Publication Date: 2020-02-24
    Description: A simulation and two reanalyses from 1985 to 2007 have been produced for the Mediterranean Sea using different assimilation schemes: a reduced-order optimal interpolation [System for Ocean Forecast and Analysis (SOFA)] and a three-dimensional variational scheme (OceanVar). The observational dataset consists of vertical temperature and salinity in situ profiles and along-track satellite sea level anomalies; daily mean fields of satellite sea surface temperature are used for correcting the air–sea fluxes. This paper assesses the quality of the reanalyses with respect to observations and the simulation. Both the SOFA and OceanVar schemes give very similar root-mean-square errors and biases for temperature and salinity fields compared with the assimilated observations. The largest errors are at the thermocline level and in regions of large eddy field variability. However, OceanVar gives 20% better results for sea level anomaly root-mean-square error.
    Description: Published
    Description: 569-59
    Description: JCR Journal
    Description: open
    Keywords: Mediterranean Sea ; 03. Hydrosphere::03.01. General::03.01.05. Operational oceanography
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 6
    facet.materialart.
    Unknown
    American Meteorological Society
    In:  EPIC3Monthly Weather Review., American Meteorological Society, 140(5), pp. 1589-1602
    Publication Date: 2014-04-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 7
    facet.materialart.
    Unknown
    Oxford University Press
    In:  EPIC3Journal of Plankton Research, Oxford University Press, 34(5), pp. 399-415, ISSN: 0142-7873
    Publication Date: 2019-07-17
    Description: This study investigates the relationships between the spring phytoplankton community and environmental factors in the Brazil-Malvinas confluence region. Phytoplankton community composition was determined by the high performance liquid chromatography/CHEMTAX approach, complemented with microscopic examination. Abiotic factors included temperature, salinity, dissolved inorganic macronutrients (ammonium, nitrite, nitrate, phosphate and silicate), water column stability and upper mixed layer depth (UMLD). These environmental variables were reasonably informative to explain the variability of the phytoplankton communities (44% of variation explained). Cluster and canonical correspondence analyses allowed discrimination of four zones (coastal, Sub-Antarctic, tropical and intermediate zones), also identifiable in the T–S diagrams and in the nutrient spatial distribution patterns. The presence of nutrient-rich Sub-Antarctic waters was a major oceanographic feature, associated with diatoms and dinoflagellates. However, in the Sub-Antarctic zone, biomass was particularly low, probably as a result of grazing pressure, as suggested by chemical and biological indicators. In contrast, in oligotrophic tropical waters, phytoplankton was mainly composed by small nanoflagellates and cyanobacteria. A large intermediate zone was also dominated by nanoflagellates, mainly Phaeocystis antarctica, probably favored by strong water column stability. The coastal zone exhibited fairly similar conditions to those in the intermediate zone, but with deeper UMLD, a favorable condition for diatom growth. These results emphasize the importance of the properties of water masses and also biological processes such as grazing in structuring phytoplankton communities in the region.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 8
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2011. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 28 (2011): 1539–1553, doi:10.1175/JTECH-D-11-00001.1.
    Description: Turbulent Reynolds stresses are now routinely estimated from acoustic Doppler current profiler (ADCP) measurements in estuaries and tidal channels using the variance method, yet biases due to surface gravity waves limit its use in the coastal ocean. Recent modifications to this method, including spatially filtering velocities to isolate the turbulence from wave velocities and fitting a cospectral model to the below-wave band cospectra, have been used to remove this bias. Individually, each modification performed well for the published test datasets, but a comparative analysis over the range of conditions in the coastal ocean has not yet been performed. This work uses ADCP velocity measurements from five previously published coastal ocean and estuarine datasets, which span a range of wave and current conditions as well as instrument configurations, to directly compare methods for estimating stresses in the presence of waves. The computed stresses from each were compared to bottom stress estimates from a quadratic drag law and, where available, estimates of wind stress. These comparisons, along with an analysis of the cospectra, indicated that spectral fitting performs well when the wave climate is wide-banded and/or multidirectional as well as when instrument noise is high. In contrast, spatial filtering performs better when waves are narrow-banded, low frequency, and when wave orbital velocities are strong relative to currents. However, as spatial filtering uses vertically separated velocity bins to remove the wave bias, spectral fitting is able to resolve stresses over a larger fraction of the water column.
    Description: J. Rosman acknowledges funding from the National Science Foundation (OCE-1061108).
    Keywords: Coastal flows ; Momentum ; Ocean circulation ; Waves, oceanic ; In situ observations ; Instrumentation/sensors
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 9
    facet.materialart.
    Unknown
    American Meteorological Society
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 1012–1021, doi:10.1175/JPO-D-11-0184.1.
    Description: Pacific Water flows across the shallow Chukchi Sea before reaching the Arctic Ocean, where it is a source of heat, freshwater, nutrients, and carbon. A substantial portion of Pacific Water is routed through Barrow Canyon, located in the northeast corner of the Chukchi. Barrow Canyon is a region of complex geometry and forcing where a variety of water masses have been observed to coexist. These factors contribute to a dynamic physical environment, with the potential for significant water mass transformation. The measurements of turbulent kinetic energy dissipation presented here indicate diapycnal mixing is important in the upper canyon. Elevated dissipation rates were observed near the pycnocline, effectively mixing winter and summer water masses, as well as within the bottom boundary layer. The slopes of shear/stratification layers, combined with analysis of rotary spectra, suggest that near-inertial wave activity may be important in modulating dissipation near the bottom. Because the canyon is known to be a hotspot of productivity with an active benthic community, mixing may be an important factor in maintenance of the biological environment.
    Description: ELS was supported as a WHOI Postdoctoral Scholar through the WHOI Ocean and Climate Change Institute.
    Description: 2012-12-01
    Keywords: Arctic ; Continental shelf/slope ; Mixing ; Small scale processes
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 10
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 25 (2012): 5153–5172, doi:10.1175/JCLI-D-11-00463.1.
    Description: Atlantic meridional overturning circulation (AMOC) variability is documented in the Community Climate System Model, version 4 (CCSM4) preindustrial control simulation that uses nominal 1° horizontal resolution in all its components. AMOC shows a broad spectrum of low-frequency variability covering the 50–200-yr range, contrasting sharply with the multidecadal variability seen in the T85 × 1 resolution CCSM3 present-day control simulation. Furthermore, the amplitude of variability is much reduced in CCSM4 compared to that of CCSM3. Similarities as well as differences in AMOC variability mechanisms between CCSM3 and CCSM4 are discussed. As in CCSM3, the CCSM4 AMOC variability is primarily driven by the positive density anomalies at the Labrador Sea (LS) deep-water formation site, peaking 2 yr prior to an AMOC maximum. All processes, including parameterized mesoscale and submesoscale eddies, play a role in the creation of salinity anomalies that dominate these density anomalies. High Nordic Sea densities do not necessarily lead to increased overflow transports because the overflow physics is governed by source and interior region density differences. Increased overflow transports do not lead to a higher AMOC either but instead appear to be a precursor to lower AMOC transports through enhanced stratification in LS. This has important implications for decadal prediction studies. The North Atlantic Oscillation (NAO) is significantly correlated with the positive boundary layer depth and density anomalies prior to an AMOC maximum. This suggests a role for NAO through setting the surface flux anomalies in LS and affecting the subpolar gyre circulation strength.
    Description: The CCSM project is supported by NSF and the Office of Science (BER) of the U.S. Department of Energy. SGY and YOK were supported by the NOAA Climate Program Office under Climate Variability and Predictability Program Grants NA09OAR4310163 and NA10OAR4310202, respectively.
    Description: 2013-02-01
    Keywords: Meridional overturning circulation ; Coupled models ; Ocean models ; Oceanic variability
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 11
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 1524–1547, doi:10.1175/JPO-D-11-0117.1.
    Description: Evidence is presented for the transfer of energy from low-frequency inertial–diurnal internal waves to high-frequency waves in the band between 6 cpd and the buoyancy frequency. This transfer links the most energetic waves in the spectrum, those receiving energy directly from the winds, barotropic tides, and parametric subharmonic instability, with those most directly involved in the breaking process. Transfer estimates are based on month-long records of ocean velocity and temperature obtained continuously over 80–800 m from the research platform (R/P) Floating Instrument Platform (FLIP) in the Hawaii Ocean Mixing Experiment (HOME) Nearfield (2002) and Farfield (2001) experiments, in Hawaiian waters. Triple correlations between low-frequency vertical shears and high-frequency Reynolds stresses, uiw∂Ui/∂z, are used to estimate energy transfers. These are supported by bispectral analysis, which show significant energy transfers to pairs of waves with nearly identical frequency. Wavenumber bispectra indicate that the vertical scales of the high-frequency waves are unequal, with one wave of comparable scale to that of the low-frequency parent and the other of much longer scale. The scales of the high-frequency waves contrast with the classical pictures of induced diffusion and elastic scattering interactions and violates the scale-separation assumption of eikonal models of interaction. The possibility that the observed waves are Doppler shifted from intrinsic frequencies near f or N is explored. Peak transfer rates in the Nearfield, an energetic tidal conversion site, are on the order of 2 × 10−7 W kg−1 and are of similar magnitude to estimates of turbulent dissipation that were made near the ridge during HOME. Transfer rates in the Farfield are found to be about half the Nearfield values.
    Description: This work was supported by the National Science Foundation and the Office of Naval Research.
    Description: 2013-03-01
    Keywords: Diapycnal mixing ; Energy transport ; Internal waves ; Nonlinear dynamics ; Ship observations ; Spectral analysis/models/distribution
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 12
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 29 (2012): 1377–1390, doi:10.1175/JTECH-D-11-00160.1.
    Description: Estimates of surface currents over the continental shelf are now regularly made using high-frequency radar (HFR) systems along much of the U.S. coastline. The recently deployed HFR system at the Martha’s Vineyard Coastal Observatory (MVCO) is a unique addition to these systems, focusing on high spatial resolution over a relatively small coastal ocean domain with high accuracy. However, initial results from the system showed sizable errors and biased estimates of M2 tidal currents, prompting an examination of new methods to improve the quality of radar-based velocity data. The analysis described here utilizes the radial metric output of CODAR Ocean Systems’ version 7 release of the SeaSonde Radial Site Software Suite to examine both the characteristics of the received signal and the output of the direction-finding algorithm to provide data quality controls on the estimated radial currents that are independent of the estimated velocity. Additionally, the effect of weighting spatial averages of radials falling within the same range and azimuthal bin is examined to account for differences in signal quality. Applied to two month-long datasets from the MVCO high-resolution system, these new methods are found to improve the rms difference comparisons with in situ current measurements by up to 2 cm s−1, as well as reduce or eliminate observed biases of tidal ellipses estimated using standard methods.
    Description: 2013-03-01
    Keywords: Coastal flows ; Currents ; Data processing ; Data quality control ; In situ atmospheric observations ; Remote sensing
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 13
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2011. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 41 (2011): 2168–2186, doi:10.1175/JPO-D-11-08.1.
    Description: This paper studies the interaction of an Antarctic Circumpolar Current (ACC)–like wind-driven channel flow with a continental slope and a flat-bottomed bay-shaped shelf near the channel’s southern boundary. Interaction between the model ACC and the topography in the second layer induces local changes of the potential vorticity (PV) flux, which further causes the formation of a first-layer PV front near the base of the topography. Located between the ACC and the first-layer slope, the newly formed PV front is constantly perturbed by the ACC and in turn forces the first-layer slope with its own variability in an intermittent but persistent way. The volume transport of the slope water across the first-layer slope edge is mostly directly driven by eddies and meanders of the new front, and its magnitude is similar to the maximum Ekman transport in the channel. Near the bay’s opening, the effect of the topographic waves, excited by offshore variability, dominates the cross-isobath exchange and induces a mean clockwise shelf circulation. The waves’ propagation is only toward the west and tends to be blocked by the bay’s western boundary in the narrow-shelf region. The ensuing wave–coast interaction amplifies the wave amplitude and the cross-shelf transport. Because the interaction only occurs near the western boundary, the shelf water in the west of the bay is more readily carried offshore than that in the east and the mean shelf circulation is also intensified along the bay’s western boundary.
    Description: Y. Zhang acknowledges the support of the MIT-WHOI Joint Program in Physical Oceanography and NSF OCE-9901654 and OCE- 0451086. J. Pedlosky acknowledges the support of NSF OCE-9901654 and OCE-0451086.
    Keywords: Baroclinic flows ; Eddies ; Fronts ; Mass fluxes/transport ; Mesoscale processes ; Topographic effects
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 14
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 25 (2012): 343–349, doi:10.1175/JCLI-D-11-00059.1.
    Description: The Equatorial Undercurrent (EUC) is a major component of the tropical Pacific Ocean circulation. EUC velocity in most global climate models is sluggish relative to observations. Insufficient ocean resolution slows the EUC in the eastern Pacific where nonlinear terms should dominate the zonal momentum balance. A slow EUC in the east creates a bottleneck for the EUC to the west. However, this bottleneck does not impair other major components of the tropical circulation, including upwelling and poleward transport. In most models, upwelling velocity and poleward transport divergence fall within directly estimated uncertainties. Both of these transports play a critical role in a theory for how the tropical Pacific may change under increased radiative forcing, that is, the ocean dynamical thermostat mechanism. These findings suggest that, in the mean, global climate models may not underrepresent the role of equatorial ocean circulation, nor perhaps bias the balance between competing mechanisms for how the tropical Pacific might change in the future. Implications for model improvement under higher resolution are also discussed.
    Description: KBK gratefully acknowledges the J. Lamar Worzel Assistant Scientist Fund. GCJ is supported by NOAA’s Office of Oceanic and Atmospheric Research. RM gratefully acknowledges the generous support and hospitality of the Divecha Centre for Climate Change and CAOS at IISc, Bangalore, and partial support by NASA PO grants.
    Description: 2012-07-01
    Keywords: Tropics ; Ocean circulation ; Ocean dynamics ; Climate models ; Coupled models ; Ocean models
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 15
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 25 (2012): 1096–1115, doi:10.1175/2011JCLI4228.1.
    Description: Ventilation, including subduction and obduction, for the global oceans was examined using Simple Ocean Data Assimilation (SODA) outputs. The global subduction rate averaged over the period from 1959 to 2006 is estimated at 505.8 Sv (1 Sv ≡ 106 m3 s−1), while the corresponding global obduction rate is estimated at 482.1 Sv. The annual subduction/obduction rates vary greatly on the interannual and decadal time scales. The global subduction rate is estimated to have increased 7.6% over the past 50 years, while the obduction rate is estimated to have increased 9.8%. Such trends may be insignificant because errors associated with the data generated by ocean data assimilation could be as large as 10%. However, a major physical mechanism that induced these trends is primarily linked to changes in the Southern Ocean. While the Southern Ocean plays a key role in global subduction and obduction rates and their variability, both the Southern Ocean and equatorial regions are critically important sites of water mass formation/erosion.
    Description: This work was supported by the Key State Basic Research Program of China under Grant 2012CB417401, the National Natural Science Foundation of China (Grants 40906007, 40890152), and the Open Foundation of Physical Oceanography Laboratory, OUC, under Grant 200902.
    Description: 2012-08-15
    Keywords: Decadal variability ; Southern Ocean ; Trends ; Water masses ; Convergence ; Mixing
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 16
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 659–668, doi:10.1175/JPO-D-11-0125.1.
    Description: Ice-tethered profiler (ITP) measurements from the Arctic Ocean’s Canada Basin indicate an ocean surface layer beneath sea ice with significant horizontal density structure on scales of hundreds of kilometers to the order 1 km submesoscale. The observed horizontal gradients in density are dynamically important in that they are associated with restratification of the surface ocean when dense water flows under light water. Such restratification is prevalent in wintertime and competes with convective mixing upon buoyancy forcing (e.g., ice growth and brine rejection) and shear-driven mixing when the ice moves relative to the ocean. Frontal structure and estimates of the balanced Richardson number point to the likelihood of dynamical restratification by isopycnal tilt and submesoscale baroclinic instability. Based on the evidence here, it is likely that submesoscale processes play an important role in setting surface-layer properties and lateral density variability in the Arctic Ocean.
    Description: Funding was provided by the National Science Foundation Office of Polar Programs Arctic Sciences Section under Awards ARC-0519899, ARC-0856479, and ARC-0806306. Support was also provided by the Woods Hole Oceanographic Institution Arctic Research Initiative.
    Description: 2012-10-01
    Keywords: Arctic ; Ocean dynamics
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 17
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 25 (2012): 2622–2651, doi:10.1175/JCLI-D-11-00301.1.
    Description: This study presents an overview of the El Niño–Southern Oscillation (ENSO) phenomenon and Pacific decadal variability (PDV) simulated in a multicentury preindustrial control integration of the NCAR Community Climate System Model version 4 (CCSM4) at nominal 1° latitude–longitude resolution. Several aspects of ENSO are improved in CCSM4 compared to its predecessor CCSM3, including the lengthened period (3–6 yr), the larger range of amplitude and frequency of events, and the longer duration of La Niña compared to El Niño. However, the overall magnitude of ENSO in CCSM4 is overestimated by ~30%. The simulated ENSO exhibits characteristics consistent with the delayed/recharge oscillator paradigm, including correspondence between the lengthened period and increased latitudinal width of the anomalous equatorial zonal wind stress. Global seasonal atmospheric teleconnections with accompanying impacts on precipitation and temperature are generally well simulated, although the wintertime deepening of the Aleutian low erroneously persists into spring. The vertical structure of the upper-ocean temperature response to ENSO in the north and south Pacific displays a realistic seasonal evolution, with notable asymmetries between warm and cold events. The model shows evidence of atmospheric circulation precursors over the North Pacific associated with the “seasonal footprinting mechanism,” similar to observations. Simulated PDV exhibits a significant spectral peak around 15 yr, with generally realistic spatial pattern and magnitude. However, PDV linkages between the tropics and extratropics are weaker than observed.
    Description: M. Alexander, A. Capotondi, and J. Scott’s participation was supported by a grant from the NSF Climate and Large-scale Dynamics Program. Y.-O. Kwon gratefully acknowledges support from a WHOI Heyman fellowship and a grant from the NSF Climate and Largescale Dynamics Program. The CESM project is supported by the National Science Foundation and the Office of Science (BER) of the U.S. Department of Energy.
    Description: 2012-10-15
    Keywords: Atmosphere-ocean interaction ; El Nino ; ENSO ; La Nina ; Pacific decadal oscillation ; Climate models
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 18
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 25 (2012): 3515–3531, doi:10.1175/JCLI-D-11-00028.1.
    Description: The study examined global variability of air–sea sensible heat flux (SHF) from 1980 to 2009 and the large-scale atmospheric and ocean circulations that gave rise to this variability. The contribution of high-latitude wintertime SHF was identified, and the relative importance of the effect of the sea–air temperature difference versus the effect of wind on decadal SHF variability was analyzed using an empirical orthogonal function (EOF) approach. The study showed that global SHF anomalies are strongly modulated by SHF at high latitudes (poleward of 45°) during winter seasons. Decadal variability of global wintertime SHF can be reasonably represented by the sum of two leading EOF modes, namely, the boreal wintertime SHF in the northern oceans and the austral wintertime SHF in the southern oceans. The study also showed that global wintertime SHF is modulated by the prominent modes of the large-scale atmospheric circulation at high latitudes. The increase of global SHF in the 1990s is attributable to the strengthening of the Southern Hemisphere annular mode index, while the decrease of global SHF after 2000 is due primarily to the downward trend of the Arctic Oscillation index. This study identified the important effects of wind direction and speed on SHF variability. Changes in winds modify the sea–air temperature gradient by advecting cold and dry air from continents and by imposing changes in wind-driven oceanic processes that affect sea surface temperature (SST). The pattern of air temperature anomalies dominates over the pattern of SST anomalies and dictates the pattern of decadal SHF variability.
    Description: The study is supported by the NOAA Office of Climate Observations (OCO) and the WHOI Arctic Climate Initiative. X. Song acknowledges the support from the China Scholarship Council, National Natural Science Foundation of China (NSFC) (40930844, 40976004, and 40921004) and the Ministry of Education’s 111 Project (B07036).
    Description: 2012-11-15
    Keywords: Atmosphere-ocean interaction
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 19
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 1083–1098, doi:10.1175/JPO-D-11-015.1.
    Description: Here, the response of a coastally trapped buoyant plume to downwelling-favorable wind forcing is explored using a simplified two-dimensional numerical model and a prognostic theory for the resulting width, depth, and density anomaly and along-shelf transport of the plume. Consistent with the numerical simulations, the analytical model shows that the wind causes mixing of the plume water and that the forced cross-shelf circulation can also generate significant deepening and surface narrowing, as well as increased along-shelf transport. The response is due to a combination of the purely advective process that leads to the steepening of the isopycnals and the entrainment of ambient water into the plume. The advective component depends on the initial plume geometry: plumes that have a large fraction of their total width in contact with the bottom (“bottom trapped”) suffer relatively small depth and width changes compared to plumes that have a large fraction of their total width detached from the bottom (“surface trapped”). Key theoretical parameters are Wγ/Wα, the ratio of the width of the plume detached from the bottom to the width of the plume in contact with it, and the ratio of the wind-generated mixed layer δe to the initial plume depth hp, which determines the amount of water initially entrained into the plume. The model results also show that the cross-shelf circulation can be strongly influenced by the wind-driven response in combination with the geostrophic shear of the plume. The continuous entrainment into the plume, as well as transient events, is also discussed.
    Description: This work has been supported by FONDECYT Grant 1070501. S. Lentz received support by theNational Science Foundation GrantOCE-0751554. C. Moffat had additional support from the National Science Foundation Office of Polar Programs through U.S. Southern Ocean GLOBEC Grants OPP 99-10092 and 06- 23223.
    Description: 2013-01-01
    Keywords: Baroclinic flows ; Boundary currents ; Coastal flows ; Upwelling/downwelling ; Wind ; Ocean models
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 20
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 25 (2012): 3549–3565, doi:10.1175/JCLI-D-11-00320.1.
    Description: The recently released NCEP Climate Forecast System Reanalysis (CFSR) is used to examine the response to ENSO in the northeast tropical Pacific Ocean (NETP) during 1979–2009. The normally cool Pacific sea surface temperatures (SSTs) associated with wind jets through the gaps in the Central American mountains at Tehuantepec, Papagayo, and Panama are substantially warmer (colder) than the surrounding ocean during El Niño (La Niña) events. Ocean dynamics generate the ENSO-related SST anomalies in the gap wind regions as the surface fluxes damp the SSTs anomalies, while the Ekman heat transport is generally in quadrature with the anomalies. The ENSO-driven warming is associated with large-scale deepening of the thermocline; with the cold thermocline water at greater depths during El Niño in the NETP, it is less likely to be vertically mixed to the surface, particularly in the gap wind regions where the thermocline is normally very close to the surface. The thermocline deepening is enhanced to the south of the Costa Rica Dome in the Papagayo region, which contributes to the local ENSO-driven SST anomalies. The NETP thermocline changes are due to coastal Kelvin waves that initiate westward-propagating Rossby waves, and possibly ocean eddies, rather than by local Ekman pumping. These findings were confirmed with regional ocean model experiments: only integrations that included interannually varying ocean boundary conditions were able to simulate the thermocline deepening and localized warming in the NETP during El Niño events; the simulation with variable surface fluxes, but boundary conditions that repeated the seasonal cycle, did not.
    Description: This research was supported by grants from the NOAA office of Global Programs and the NSF Climate and Global Dynamics Division.
    Description: 2012-11-15
    Keywords: North Pacific Ocean ; Atmosphere-ocean interaction ; ENSO ; Thermocline circulation ; Waves, oceanic ; Ocean models
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 21
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 29 (2012): 1363–1376, doi:10.1175/JTECH-D-12-00060.1.
    Description: The design of a surface mooring for deployment in the Gulf Stream in the Mid-Atlantic Bight is described. The authors' goals were to observe the surface meteorology; upper-ocean variability; and air–sea exchanges of heat, freshwater, and momentum in and near the Gulf Stream during two successive 1-yr deployments. Of particular interest was quantifying these air–sea fluxes during wintertime events that carry cold, dry air from the land over the Gulf Stream. Historical current data and information about the surface waves were used to guide the design of the surface mooring. The surface buoy provided the platform for both bulk meteorological sensors and a direct covariance flux system. Redundancy in the meteorological sensors proved to be a largely successful strategy to obtain complete time series. Oceanographic instrumentation was limited in size by considerations of drag; and two current meters, three temperature–salinity recorders, and 15 temperature recorders were deployed. Deployment from a single-screw vessel in the Gulf Stream required a controlled-drift stern first over the anchor sites. The first deployment lasted the planned full year. The second deployment ended after 3 months when the mooring was cut by unknown means at a depth of about 3000 m. The mooring was at times in the core of the Gulf Stream, and a peak surface current of over 2.7 m s−1 was observed. The 15-month records of surface meteorology and air–sea fluxes captured the seasonal variability as well as several cold-air outbreaks; the peak observed heat loss was in excess of 1400 W m−2.
    Description: This work was funded by the National Science Foundation Grant OCE04-24536 as part of the CLIVAR Mode Water Dynamics Experiment (CLIMODE). The Vetlesen Foundation is also acknowledged for the early support of SB.
    Description: 2013-03-01
    Keywords: Buoy observations
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 22
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 1981–2000, doi:10.1175/JPO-D-12-028.1.
    Description: Packets of nonlinear internal waves (NLIWs) in a small area of the Mid-Atlantic Bight were 10 times more energetic during a local neap tide than during the preceding spring tide. This counterintuitive result cannot be explained if the waves are generated near the shelf break by the local barotropic tide since changes in shelfbreak stratification explain only a small fraction of the variability in barotropic to baroclinic conversion. Instead, this study suggests that the occurrence of strong NLIWs was caused by the shoaling of distantly generated internal tides with amplitudes that are uncorrelated with the local spring-neap cycle. An extensive set of moored observations show that NLIWs are correlated with the internal tide but uncorrelated with barotropic tide. Using harmonic analysis of a 40-day record, this study associates steady-phase motions at the shelf break with waves generated by the local barotropic tide and variable-phase motions with the shoaling of distantly generated internal tides. The dual sources of internal tide energy (local or remote) mean that shelf internal tides and NLIWs will be predictable with a local model only if the locally generated internal tides are significantly stronger than shoaling internal tides. Since the depth-integrated internal tide energy in the open ocean can greatly exceed that on the shelf, it is likely that shoaling internal tides control the energetics on shelves that are directly exposed to the open ocean.
    Description: This research was supported by ONR Grants N00014-05-1-0271, N00014-08-1-0991, N00014-04- 1-0146, and N00014-11-1-0194.
    Description: 2013-05-01
    Keywords: Internal waves ; Nonlinear dynamics ; Tides
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 23
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 329-351, doi:10.1175/JPO-D-11-026.1.
    Description: Data from a closely spaced array of moorings situated across the Beaufort Sea shelfbreak at 152°W are used to study the Western Arctic Shelfbreak Current, with emphasis on its configuration during the summer season. Two dynamically distinct states of the current are revealed in the absence of wind, with each lasting approximately one month. The first is a surface-intensified shelfbreak jet transporting warm and buoyant Alaskan Coastal Water in late summer. This is the eastward continuation of the Alaskan Coastal Current. It is both baroclinically and barotropically unstable and hence capable of forming the surface-intensified warm-core eddies observed in the southern Beaufort Sea. The second configuration, present during early summer, is a bottom-intensified shelfbreak current advecting weakly stratified Chukchi Summer Water. It is baroclinically unstable and likely forms the middepth warm-core eddies present in the interior basin. The mesoscale instabilities extract energy from the mean flow such that the surface-intensified jet should spin down over an e-folding distance of 300 km beyond the array site, whereas the bottom-intensified configuration should decay within 150 km. This implies that Pacific Summer Water does not extend far into the Canadian Beaufort Sea as a well-defined shelfbreak current. In contrast, the Pacific Winter Water configuration of the shelfbreak jet is estimated to decay over a much greater distance of approximately 1400 km, implying that it should reach the first entrance to the Canadian Arctic Archipelago.
    Description: This work was supported by National Science Foundation GrantsOCE-0726640,OPP-0731928, and OPP-0713250.
    Description: 2012-09-01
    Keywords: Arctic ; Continental shelf/slope ; Boundary currents
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 24
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 748–763, doi:10.1175/JPO-D-11-086.1.
    Description: Isohaline coordinate analysis is used to compare the exchange flow in two contrasting estuaries, the long (with respect to tidal excursion) Hudson River and the short Merrimack River, using validated numerical models. The isohaline analysis averages fluxes in salinity space rather than in physical space, yielding the isohaline exchange flow that incorporates both subtidal and tidal fluxes and precisely satisfies the Knudsen relation. The isohaline analysis can be consistently applied to both subtidally and tidally dominated estuaries. In the Hudson, the isohaline exchange flow is similar to results from the Eulerian analysis, and the conventional estuarine theory can be used to quantify the salt transport based on scaling with the baroclinic pressure gradient. In the Merrimack, the isohaline exchange flow is much larger than the Eulerian quantity, indicating the dominance of tidal salt flux. The exchange flow does not scale with the baroclinic pressure gradient but rather with tidal volume flux. This tidal exchange is driven by tidal pumping due to the jet–sink flow at the mouth constriction, leading to a linear dependence of exchange flow on tidal volume flux. Finally, a tidal conversion parameter Qin/Qprism, measuring the fraction of tidal inflow Qprism that is converted into net exchange Qin, is proposed to characterize the exchange processes among different systems. It is found that the length scale ratio between tidal excursion and salinity intrusion provides a characteristic to distinguish estuarine regimes.
    Description: SNC is supported by a WHOI postdoctoral scholarship, a NSF Grant OCE-0926427, and a Taiwan National Science Council Grant NSC 100- 2199-M-002-028.WRGis supported byNSFGrantOCE- 0926427. JAL is supported by NSF Grant OCE-0452054.
    Description: 2012-11-01
    Keywords: Coastal flows
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 25
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 855–868, doi:10.1175/JPO-D-10-05010.1.
    Description: Data from the Hudson River estuary demonstrate that the tidal variations in vertical salinity stratification are not consistent with the patterns associated with along-channel tidal straining. These observations result from three additional processes not accounted for in the traditional tidal straining model: 1) along-channel and 2) lateral advection of horizontal gradients in the vertical salinity gradient and 3) tidal asymmetries in the strength of vertical mixing. As a result, cross-sectionally averaged values of the vertical salinity gradient are shown to increase during the flood tide and decrease during the ebb. Only over a limited portion of the cross section does the observed stratification increase during the ebb and decrease during the flood. These observations highlight the three-dimensional nature of estuarine flows and demonstrate that lateral circulation provides an alternate mechanism that allows for the exchange of materials between surface and bottom waters, even when direct turbulent mixing through the pycnocline is prohibited by strong stratification.
    Description: The funding for this research was obtained from NSF Grant OCE-08-25226.
    Description: 2012-11-01
    Keywords: Mixing ; Ocean circulation ; Shear structure/flows ; Transport ; Turbulence
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 26
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2011. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 41 (2011): 2307–2327, doi:10.1175/JPO-D-10-05004.1.
    Description: Results from a high-resolution (~2 km) numerical simulation of the Irminger Basin during summer 2003 are presented. The focus is on the East Greenland Spill Jet, a recently discovered component of the circulation in the basin. The simulation compares well with observations of surface fields, the Denmark Strait overflow (DSO), and the hydrographic structure of typical sections in the basin. The model reveals new aspects of the circulation on scales of O(0.1–10) days and O(1–100) km. The model Spill Jet results from the cascade of dense waters over the East Greenland shelf. Spilling can occur in various locations southwest of the strait, and it is present throughout the simulation but exhibits large variations on periods of O(0.1–10) days. The Spill Jet sometimes cannot be distinguished in the velocity field from surface eddies or from the DSO. The vorticity structure of the jet confirms its unstable nature with peak relative and tilting vorticity terms reaching twice the planetary vorticity term. The average model Spill Jet transport is 4.9 ±1.7 Sv (1 Sv ≡ 106 m3 s−1) equatorward, about 2½ times larger than has been previously reported from a single ship transect in August 2001. Kinematic analysis of the model results suggests two different types of spilling events. In the first case (type I), a local perturbation results in dense waters descending over the shelf break into the Irminger Basin. In the second case (type II), surface cyclones associated with DSO deep domes initiate the spilling process. During summer 2003, more than half of the largest Spill Jet transport values are of type II.
    Description: The research is supported by the National Science Foundation Grants OCE-0726393 and OCI-0904640 (MGM and TWNH) and OCE-0726640 (RSP).
    Description: 2012-06-01
    Keywords: North Atlantic Ocean ; In situ observations ; Regional models
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 27
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 126–140, doi:10.1175/2011JPO4513.1.
    Description: A climatologically forced high-resolution model is used to examine variability of subtropical mode water (STMW) in the northwestern Pacific Ocean. Despite the use of annually repeating atmospheric forcing, significant interannual to decadal variability is evident in the volume, temperature, and age of STMW formed in the region. This long time-scale variability is intrinsic to the ocean. The formation and characteristics of STMW are comparable to those observed in nature. STMW is found to be cooler, denser, and shallower in the east than in the west, but time variations in these properties are generally correlated across the full water mass. Formation is found to occur south of the Kuroshio Extension, and after formation STMW is advected westward, as shown by the transport streamfunction. The ideal age and chlorofluorocarbon tracers are used to analyze the life cycle of STMW. Over the full model run, the average age of STMW is found to be 4.1 yr, but there is strong geographical variation in this, from an average age of 3.0 yr in the east to 4.9 yr in the west. This is further evidence that STMW is formed in the east and travels to the west. This is qualitatively confirmed through simulated dye experiments known as transit-time distributions. Changes in STMW formation are correlated with a large meander in the path of the Kuroshio south of Japan. In the model, the large meander inhibits STMW formation just south of Japan, but the export of water with low potential vorticity leads to formation of STMW in the east and an overall increase in volume. This is correlated with an increase in the outcrop area of STMW. Mixed layer depth, on the other hand, is found to be uncorrelated with the volume of STMW.
    Description: E.M.D. acknowledges support of the Doherty Foundation and National Science Foundation (OCE-0849808). S.R.J was sponsored by the National Science Foundation (OCE-0849808). Participation of S.P. and F.B. was supported by the National Science Foundation by its sponsorship of the National Center for Atmospheric Research.
    Description: 2012-07-01
    Keywords: Water masses ; Pacific Ocean ; Tracers ; Advection ; Forcing ; Interannual variuability
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 28
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2011. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 41 (2011): 2223–2241, doi:10.1175/2011JPO4344.1.
    Description: Results are presented from an observational study of stratified, turbulent flow in the bottom boundary layer on the outer southeast Florida shelf. Measurements of momentum and heat fluxes were made using an array of acoustic Doppler velocimeters and fast-response temperature sensors in the bottom 3 m over a rough reef slope. Direct estimates of flux Richardson number Rf confirm previous laboratory, numerical, and observational work, which find mixing efficiency not to be a constant but rather to vary with Frt, Reb, and Rig. These results depart from previous observations in that the highest levels of mixing efficiency occur for Frt 〈 1, suggesting that efficient mixing can also happen in regions of buoyancy-controlled turbulence. Generally, the authors find that turbulence in the reef bottom boundary layer is highly variable in time and modified by near-bed flow, shear, and stratification driven by shoaling internal waves.
    Description: Funding was provided by grants from the National Oceanic and Atmospheric Administration’s National Undersea Research Program, National Science Foundation Grants OCE-0622967 and OCE- 0824972 to SGM, and the Singapore Stanford Program. Kristen Davis was supported by a National Defense Science and Engineering Graduate Fellowship and an ARCS Foundation Fellowship.
    Keywords: Boundary layer ; Turbulence ; Bottom currents ; Mixing ; Internal waves
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 29
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 669–691, doi:10.1175/2011JPO4129.1.
    Description: The spectral energy density of the internal waves in the open ocean is considered. The Garrett and Munk spectrum and the resonant kinetic equation are used as the main tools of the study. Evaluations of a resonant kinetic equation that suggest the slow time evolution of the Garrett and Munk spectrum is not in fact slow are reported. Instead, nonlinear transfers lead to evolution time scales that are smaller than one wave period at high vertical wavenumber. Such values of the transfer rates are inconsistent with the viewpoint expressed in papers by C. H. McComas and P. Müller, and by P. Müller et al., which regards the Garrett and Munk spectrum as an approximate stationary state of the resonant kinetic equation. It also puts the self-consistency of a resonant kinetic equation at a serious risk. The possible reasons for and resolutions of this paradox are explored. Inclusion of near-resonant interactions decreases the rate at which the spectrum evolves. Consequently, this inclusion shows a tendency of improving of self-consistency of the kinetic equation approach.
    Description: YL is supported by NSF DMS Grant 0807871 and ONR Award N00014-09-1-0515.
    Description: 2012-11-01
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 30
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 25 (2012): 6743–6755, doi:10.1175/JCLI-D-11-00549.1.
    Description: From 1969 to 1971 convection in the Labrador Sea shut down, thus interrupting the formation of the intermediate/dense water masses. The shutdown has been attributed to the surface freshening induced by the Great Salinity Anomaly (GSA), a freshwater anomaly in the subpolar North Atlantic. The abrupt resumption of convection in 1972, in contrast, is attributed to the extreme atmospheric forcing of that winter. Here oceanic and atmospheric data collected in the Labrador Sea at Ocean Weather Station Bravo and a one-dimensional mixed layer model are used to examine the causes of the shutdown and resumption of convection in detail. These results highlight the tight coupling of the ocean and atmosphere in convection regions and the need to resolve both components to correctly represent convective processes in the ocean. They are also relevant to present-day conditions given the increased ice melt in the Arctic Ocean and from the Greenland Ice Sheet. The analysis herein shows that the shutdown was initiated by the GSA-induced freshening as well as the mild 1968/69 winter. After the shutdown had begun, however, the continuing lateral freshwater flux as well as two positive feedbacks [both associated with the sea surface temperature (SST) decrease due to lack of convective mixing with warmer subsurface water] further inhibited convection. First, the SST decrease reduced the heat flux to the atmosphere by reducing the air–sea temperature gradient. Second, it further reduced the surface buoyancy loss by reducing the thermal expansion coefficient of the surface water. In 1972 convection resumed because of both the extreme atmospheric forcing and advection of saltier waters into the convection region.
    Description: This research was funded by a grant from the NWO/SRON User Support Programme Space Research. FS acknowledges support from OCE- 0850416 and NOAA NA08OAR4310569.
    Description: 2013-04-01
    Keywords: Atmosphere-ocean interaction ; Intermediate waters ; Oceanic variability
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 31
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 1859–1881, doi:10.1175/JPO-D-11-0235.1.
    Description: In the 1970s and 1980s, there was considerable interest in near-equatorial variability at periods of days to weeks associated with oceanic equatorial inertia–gravity waves and mixed Rossby–gravity waves. At that time, the measurements available for studying these waves were much more limited than today: most of the available observations were from scattered island tide gauges and a handful of short mooring records. More than a decade of the extensive modern data record from the Tropical Atmosphere Ocean (TAO)/Triangle Trans-Ocean Buoy Network (TRITON) mooring array in the Pacific Ocean is used to reexamine the internal-wave climate in the equatorial Pacific, with a focus on interpretation of the zonal-wavenumber/frequency spectrum of surface dynamic height relative to 500 decibars at periods of 3–15 days and zonal wavelengths exceeding 30° of longitude. To facilitate interpretation of the dynamic height spectrum and identification of equatorial wave modes, the spectrum is decomposed into separate spectra associated with dynamic height fluctuations that are symmetric or antisymmetric about the equator. Many equatorial-wave meridional modes can be identified, for both the first and second baroclinic mode. Zonal-wavenumber/frequency spectra of the zonal and meridional wind stress components are also examined. The observed wind stress spectra are used with linear theory of forced equatorial waves to provide a tentative explanation for the zonal-wavenumber extent of the spectral peaks seen in dynamic height. Examination of the cross-equatorial symmetry properties of the wind stress suggests that virtually all of the large-scale equatorial inertia–gravity and mixed Rossby–gravity waves examined may be sensitive to both zonal and meridional wind stress.
    Description: This research was funded by NASA Grant NNX10AO93G.
    Description: 2013-05-01
    Keywords: Inertia-gravity waves
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 32
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 291–305, doi:10.1175/JPO-D-11-043.1.
    Description: A number of previous observational studies have found that the waters of the deep Pacific Ocean have an age, or elapsed time since contact with the surface, of 700–1000 yr. Numerical models suggest ages twice as old. Here, the authors present an inverse framework to determine the mean age and its upper and lower bounds given Global Ocean Data Analysis Project (GLODAP) radiocarbon observations, and they show that the potential range of ages increases with the number of constituents or sources that are included in the analysis. The inversion requires decomposing the World Ocean into source waters, which is obtained here using the total matrix intercomparison (TMI) method at up to 2° × 2° horizontal resolution with 11 113 surface sources. The authors find that the North Pacific at 2500-m depth can be no younger than 1100 yr old, which is older than some previous observational estimates. Accounting for the broadness of surface regions where waters originate leads to a reservoir-age correction of almost 100 yr smaller than would be estimated with a two or three water-mass decomposition and explains some of the discrepancy with previous observational studies. A best estimate of mean age is also presented using the mixing history along circulation pathways. Subject to the caveats that inference of the mixing history would benefit from further observations and that radiocarbon cannot rule out the presence of extremely old waters from exotic sources, the deep North Pacific waters are 1200–1500 yr old, which is more in line with existing numerical model results.
    Description: GG is supported by the J. Lamar Worzel Assistant Scientist Fund and the Penzance Endowed Fund in Support of Assistant Scientists. PJH is supported by NSF Award 0960787.
    Description: 2012-08-01
    Keywords: North Pacific Ocean ; Mass fluxes/transport ; Ocean circulation ; Tracers ; Optimization ; Variational analysis
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 33
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 25 (2012): 1361–1389, doi:10.1175/JCLI-D-11-00091.1.
    Description: The ocean component of the Community Climate System Model version 4 (CCSM4) is described, and its solutions from the twentieth-century (20C) simulations are documented in comparison with observations and those of CCSM3. The improvements to the ocean model physical processes include new parameterizations to represent previously missing physics and modifications of existing parameterizations to incorporate recent new developments. In comparison with CCSM3, the new solutions show some significant improvements that can be attributed to these model changes. These include a better equatorial current structure, a sharper thermocline, and elimination of the cold bias of the equatorial cold tongue all in the Pacific Ocean; reduced sea surface temperature (SST) and salinity biases along the North Atlantic Current path; and much smaller potential temperature and salinity biases in the near-surface Pacific Ocean. Other improvements include a global-mean SST that is more consistent with the present-day observations due to a different spinup procedure from that used in CCSM3. Despite these improvements, many of the biases present in CCSM3 still exist in CCSM4. A major concern continues to be the substantial heat content loss in the ocean during the preindustrial control simulation from which the 20C cases start. This heat loss largely reflects the top of the atmospheric model heat loss rate in the coupled system, and it essentially determines the abyssal ocean potential temperature biases in the 20C simulations. There is also a deep salty bias in all basins. As a result of this latter bias in the deep North Atlantic, the parameterized overflow waters cannot penetrate much deeper than in CCSM3.
    Description: NCAR is sponsored by the National Science Foundation. The CCSM is also sponsored by the Department of Energy. SGY was supported by the NOAA Climate Program Office under Climate Variability and Predictability Program Grant NA09OAR4310163.
    Description: 2012-09-01
    Keywords: Ocean circulation ; Climate models ; General circulation models ; Ocean models
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 34
    facet.materialart.
    Unknown
    American Meteorological Society
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 644–658, doi:10.1175/JPO-D-11-0143.1.
    Description: When steady flow in a stratified ocean passes between the continental slope and open ocean, its ability to cross isobaths is potentially limited by buoyancy arrest. If the bottom Ekman transport vanishes and there are no interior stresses, then steady linear flow on an f plane must be geostrophic and follow isobaths exactly. The influence of arrest on cross-shelf transport is investigated here to establish 1) whether there are substantial penetration asymmetries between cases with upwelling and downwelling in the bottom boundary layer; 2) over what spatial scales, hence in what parameter regime, buoyancy arrest is important; and 3) the effects of depth-dependent interior flow. The problem is approached using scalings and idealized numerical models. The results show that there is little or no asymmetry introduced by bottom boundary layer behavior. Further, if the stratification is weak or moderate, as measured by a slope Burger number s = αN/f (where α is the bottom slope, N is buoyancy frequency, and f is the Coriolis parameter), buoyancy arrest does not exert a strong constraint on cross-isobath exchange.
    Description: This research was supported by the National Science Foundation Physical Oceanography program through Grant OCE-0849498.
    Description: 2012-10-01
    Keywords: Coastal flows ; Ekman pumping/transport
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 35
    Publication Date: 2022-05-26
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nucleic Acids Research 40 (2012): 7132-7149, doi:10.1093/nar/gks467.
    Description: The capacity of microorganisms to respond to variable external conditions requires a coordination of environment-sensing mechanisms and decision-making regulatory circuits. Here, we seek to understand the interplay between these two processes by combining high-throughput measurement of time-dependent mRNA profiles with a novel computational approach that searches for key genetic triggers of transcriptional changes. Our approach helped us understand the regulatory strategies of a respiratorily versatile bacterium with promising bioenergy and bioremediation applications, Shewanella oneidensis, in minimal and rich media. By comparing expression profiles across these two conditions, we unveiled components of the transcriptional program that depend mainly on the growth phase. Conversely, by integrating our time-dependent data with a previously available large compendium of static perturbation responses, we identified transcriptional changes that cannot be explained solely by internal network dynamics, but are rather triggered by specific genes acting as key mediators of an environment-dependent response. These transcriptional triggers include known and novel regulators that respond to carbon, nitrogen and oxygen limitation. Our analysis suggests a sequence of physiological responses, including a coupling between nitrogen depletion and glycogen storage, partially recapitulated through dynamic flux balance analysis, and experimentally confirmed by metabolite measurements. Our approach is broadly applicable to other systems.
    Description: Office of Science (BER), U.S. Department of Energy [DE-FG02-07ER64388 to D.S. and DE-FG02- 08ER64511 to M.H.S.]; National Aeronautics and Space Administration, NASA Astrobiology Institute [NNA08CN84A to D.S.].
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Format: application/vnd.ms-excel
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 36
    facet.materialart.
    Unknown
    American Meteorological Society
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 1684–1700, doi:10.1175/JPO-D-11-0230.1.
    Description: The influences of precipitation on water mass transformation and the strength of the meridional overturning circulation in marginal seas are studied using theoretical and idealized numerical models. Nondimensional equations are developed for the temperature and salinity anomalies of deep convective water masses, making explicit their dependence on both geometric parameters such as basin area, sill depth, and latitude, as well as on the strength of atmospheric forcing. In addition to the properties of the convective water, the theory also predicts the magnitude of precipitation required to shut down deep convection and switch the circulation into the haline mode. High-resolution numerical model calculations compare well with the theory for the properties of the convective water mass, the strength of the meridional overturning circulation, and also the shutdown of deep convection. However, the numerical model also shows that, for precipitation levels that exceed this critical threshold, the circulation retains downwelling and northward heat transport, even in the absence of deep convection.
    Description: This study was supported by the National Science Foundation underGrantsOCE-0850416, OCE-0959381, andOCE-0859381.
    Description: 2013-04-01
    Keywords: Boundary currents ; Deep convection ; Eddies ; Meridional overturning circulation ; Ocean dynamics ; Stability
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 37
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 1834–1858, doi:10.1175/JPO-D-11-0234.1.
    Description: The theoretical resonant excitation of equatorial inertia–gravity waves and mixed Rossby–gravity waves is examined. Contrary to occasionally published expectations, solutions show that winds that are broadband in both zonal wavenumber and frequency do not in general produce peaks in the wavenumber–frequency spectrum of sea surface height (SSH) at wavenumbers associated with vanishing zonal group velocity. Excitation of total wave energy in inertia–gravity modes by broadband zonal winds is virtually wavenumber independent when the meridional structure of the winds does not impose a bias toward negative or positive zonal wavenumbers. With increasing wavenumber magnitude |k|, inertia–gravity waves asymptote toward zonally propagating pure gravity waves, in which the magnitude of meridional velocity υ becomes progressively smaller relative to the magnitude of zonal velocity u and pressure p. When the total wave energy is independent of wavenumber, this effect produces a peak in |υ|2 near the wavenumber where group velocity vanishes, but a trough in |p|2 (or SSH variance). Another consequence of the shift toward pure gravity wave structure is that broadband meridional winds excite inertia–gravity modes progressively less efficiently as |k| increases and υ becomes less important to the wave structure. Broadband meridional winds produce a low-wavenumber peak in total wave energy leading to a subtle elevation of |p|2 at low wavenumbers, but this is due entirely to the decrease in the forcing efficiency of meridional winds with increasing |k|, rather than to the vanishing of the group velocity. Physical conditions that might alter the above conclusions are discussed.
    Description: This research was funded by NASA Grant NNX10AO93G.
    Description: 2013-05-01
    Keywords: Inertia-gravity waves ; Ocean dynamics
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 38
    Publication Date: 2012-03-09
    Description: The role played by the required level of statistical significance in the scientific method should not be seen as analogous to that played by the standard of proof in the legal process.
    Print ISSN: 1470-8396
    Electronic ISSN: 1470-840X
    Topics: Mathematics , Law
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 39
    Publication Date: 2012-03-09
    Description: The Supreme Court ruled in Matrixx that statistical significance is not necessary to show that a drug caused an adverse reaction. Five circuit court decisions holding otherwise preceded this decision. This paper examines the extent to which the Supreme Court’s reasoning differed from those of the circuit courts.
    Print ISSN: 1470-8396
    Electronic ISSN: 1470-840X
    Topics: Mathematics , Law
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 40
    Publication Date: 2012-03-09
    Description: Unlike the evaluation of single items of scientific evidence, the formal study and analysis of the joint evaluation of several distinct items of forensic evidence has to date received some punctual, rather than systematic, attention. Questions about the (i) relationships among a set of (usually unobservable) propositions and a set of (observable) items of scientific evidence, (ii) the joint probative value of a collection of distinct items of evidence as well as (iii) the contribution of each individual item within a given group of pieces of evidence still represent fundamental areas of research. To some degree, this is remarkable since both, forensic science theory and practice, yet many daily inference tasks, require the consideration of multiple items if not masses of evidence. A recurrent and particular complication that arises in such settings is that the application of probability theory, i.e. the reference method for reasoning under uncertainty, becomes increasingly demanding. The present paper takes this as a starting point and discusses graphical probability models, i.e. Bayesian networks, as framework within which the joint evaluation of scientific evidence can be approached in some viable way. Based on a review of existing main contributions in this area, the article here aims at presenting instances of real case studies from the author’s institution in order to point out the usefulness and capacities of Bayesian networks for the probabilistic assessment of the probative value of multiple and interrelated items of evidence. A main emphasis is placed on underlying general patterns of inference, their representation as well as their graphical probabilistic analysis. Attention is also drawn to inferential interactions, such as redundancy, synergy and directional change. These distinguish the joint evaluation of evidence from assessments of isolated items of evidence. Together, these topics present aspects of interest to both, domain experts and recipients of expert information, because they have bearing on how multiple items of evidence are meaningfully and appropriately set into context.
    Print ISSN: 1470-8396
    Electronic ISSN: 1470-840X
    Topics: Mathematics , Law
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 41
    Publication Date: 2012-03-09
    Print ISSN: 1470-8396
    Electronic ISSN: 1470-840X
    Topics: Mathematics , Law
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 42
    Publication Date: 2012-03-09
    Description: In its first foray into the labyrinth that causation in personal injury has become, the U.K. Supreme Court recently held obiter that statistical evidence alone could not establish causation. But in an earlier toxic tort case, the High Court had relied on epidemiological evidence to identify a cluster of birth defects arising in the vicinity of a contaminated land site. This recent British experience is then discussed within the wider context of the forensic role of ‘naked statistics’.
    Print ISSN: 1470-8396
    Electronic ISSN: 1470-840X
    Topics: Mathematics , Law
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 43
    Publication Date: 2012-03-09
    Description: Scales of conclusion in forensic interpretation play an important role in the interface between scientific work at a forensic laboratory and different bodies of the jurisdictional system of a country. Of particular importance is the use of a unified scale that allows interpretation of different kinds of evidence in one common framework. The logical approach to forensic interpretation comprises the use of the likelihood ratio as a measure of evidentiary strength. While fully understood by forensic scientists, the likelihood ratio may be hard to interpret for a person not trained in natural sciences or mathematics. Translation of likelihood ratios to an ordinal scale including verbal counterparts of the levels is therefore a necessary procedure for communicating evidence values to the police and in the courtroom. In this paper, we present a method to develop an ordinal scale for the value of evidence that can be applied to any type of forensic findings. The method is built on probabilistic reasoning about the interpretation of findings and the number of scale levels chosen is a compromise between a pragmatic limit and mathematically well-defined distances between levels. The application of the unified scale is illustrated by a number of case studies.
    Print ISSN: 1470-8396
    Electronic ISSN: 1470-840X
    Topics: Mathematics , Law
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 44
    Publication Date: 2012-03-09
    Description: In personal injury litigation, claimants may seek their compensation for future losses or expenses as a lump sum that is determined by the product of a multiplicand and a multiplier. The multiplicand represents the annual loss in earnings and other benefits, as assessed at the trial date, while the multiplier discounts future pecuniary values into a single present-day lump sum amount. At present, multipliers in the UK are calculated using actuarial methods and based on assumed mortality and interest rates. However, it is entirely possible that these assumptions are incorrect, and if they are, then all claimants who rely on the same set of actuarial multipliers will be affected. In this article, we investigate how the uncertainty surrounding mortality and interest rate assumptions affects the precision of actuarial multipliers. With the aid of stochastic models, we estimate the possible range of values that an actuarial multiplier can take.
    Print ISSN: 1470-8396
    Electronic ISSN: 1470-840X
    Topics: Mathematics , Law
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 45
    Publication Date: 2012-03-10
    Description: In this article we report and discuss a contextual problem solving task that was proposed to a class of 8th grade (13–14-year-old) students. These students had been developing a reasonable experience in the use of the spreadsheet to model relations within contextual problems and chose to use this tool to solve the mentioned problem, engaging in the process of translating relations between variables and combining them in chained models, while working with fractions, multiples and expressions. We intend to highlight the role of the spreadsheet in students’ processes of variable identification and translation of the problem conditions, their numerical approaches to algebraic models and their experimental forms of finding solutions to equations.
    Print ISSN: 0268-3679
    Electronic ISSN: 1471-6976
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 46
    Publication Date: 2012-03-10
    Print ISSN: 0268-3679
    Electronic ISSN: 1471-6976
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 47
    Publication Date: 2012-03-10
    Description: This theoretical study is an attempt to explore the potential of the dynamic and interactive mathematics learning environments (DIMLE) in relation to the technological pedagogical content knowledge (TPACK) framework. DIMLE are developed with intent to support learning mathematics through free exploration in a less constrained environment. A typical DIMLE software package has interactivity and dynamism as key affordances; these are especially suitable for enhancing learning and teaching with technology of the essentially dynamic mathematics concepts. Moreover, we propose that DIMLE and their affordances should be studied under the TPACK framework because this framework is explicit in considering technology-supported mathematics learning as a qualitative add-on as contrasted to what would be a simple totalling of technological, pedagogical and mathematical knowledge. As an example, we focus in our discussion on using a DIMLE in order to support learner in development of the limit concept.
    Print ISSN: 0268-3679
    Electronic ISSN: 1471-6976
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 48
    Publication Date: 2012-03-10
    Description: The present article reports a study concerning the analysis of 19 activity plans (we call them ‘scenarios’) developed by mathematics teacher educators-in-training for the pedagogical use of digital tools. The development of these scenarios took place during their training program and was designed as an activity for increasing reflection, for expressing creative pedagogical ideas and for an active engagement in the design of curricula enriched with the use of technology. Our analysis showed that the trainee teacher educators deconstructed and reconstructed respective parts of the formal curriculum regarding the mathematical concepts they chose to embody in their scenarios.
    Print ISSN: 0268-3679
    Electronic ISSN: 1471-6976
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 49
    Publication Date: 2012-03-10
    Description: In this research we present the use of some technologies in problem solving activities (at different secondary school grades), aimed at finding a model for a geometric configuration, and representing this model in various ways: through a construction, through a Cartesian graph, etc. The task is part of a teaching experiment, in which students used paper and pencil, and technological tools: a sensor and a calculator (at a lower grade), GeoGebra and TI-Nspire (at a higher grade). We show results in terms of the passage from static to dynamic representations and back, to observe how technology may foster dynamic thinking for students solving mathematical problems. Data suggest that the dynamic features of technology support the genesis of conjectures, and their validation or refutation, along with the choice of independent and dependent variables. Results are used to prepare materials for teacher training in an e-learning Moodle platform (Comenius EdUmatics Project).
    Print ISSN: 0268-3679
    Electronic ISSN: 1471-6976
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 50
    Publication Date: 2012-02-22
    Description: SUMMARY In the absence of seismological measurements, observations of the topography and gravity fields of solid planets are the primary constraints on their internal structure. To compute the synthetic geoid and topography induced by the dynamics of planetary interiors, we introduce a 3-D numerical tool describing mantle convection beneath an elastic lithosphere. Although the energy conservation is treated in the whole spherical domain, the deformation aspect is solved using a hybrid technique (finite volume method for the viscous flow, spectral method for elastic deformation). The mechanical coupling is achieved via the imposition of the traction at the surface of the viscous flow as a basal boundary condition for the elastic deformation. We present both response functions and full thermal convection cases computed with our new method for planetary bodies of varying dimensions: the filtering effect of the lithosphere on the dynamic topography and geoid is specific for each planetary body, justifying the importance of such a tool. Furthermore, since our approach specifically focuses on the mechanical coupling at the base of the lithosphere, it will permit future, more elaborate, rheological treatments. It also enables to discriminate between the radial and tangential components of the viscous traction. The latter is found to have a significant influence on the elastic deformation. The effect on geoid is prominent. More specifically, while a thin elastic lithosphere is usually considered to play little role on the dynamic topography and geoid of Venus, a ∼35 per cent reduction is obtained for geoid height in the numerical example we propose. On a planet with thicker elastic lithosphere such as Mars, the consequence of this filtering effect is to rule out the possibility of a dynamical support for the Tharsis Rise, even for the lowest admissible values of elastic thickness in this region.
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 51
    Publication Date: 2012-02-22
    Description: SUMMARY The Central Iran plateau appears aseismic during the last few millenniums based on instrumental and historical seismic records. Nevertheless, it is sliced by several strike-slip faults that are hundreds of kilometres long. These faults display along-strike, horizontal offsets of intermittent gullies that suggest the occurrence of earthquakes in the Holocene. Establishing this is crucial for accurately assessing the regional seismic hazard. The first palaeoseismic study performed on the 200-km long, NS striking Anar fault shows that this right-lateral fault hosted three large ( M w ≈ 7) earthquakes during the Holocene or possibly Uppermost Pleistocene for the older one. These three seismic events are recorded within a sedimentary succession, which is not older than 15 ka, suggesting an average recurrence of at most 5 ka. The six optically stimulated luminescence ages available provide additional constraints and allow estimating that the three earthquakes have occurred within the following time intervals: 4.4 ± 0.8, 6.8 ± 1 and 9.8 ± 2 ka. The preferred age of the more recent event, ranging between 3600 and 5200 yr, suggests that the fault is approaching the end of its seismic cycle and the city of Anar could be under the threat of a destructive earthquake in the near future. In addition, our results confirm a previous minimum slip rate estimate of 0.8 ± 0.1 mm yr −1 for the Anar fault indicating that the westernmost prominent right-lateral faults of the Central Iran plateau are characterized by slip rates close to 1 mm yr −1 . These faults, which have repeatedly produced destructive earthquakes with large magnitudes and long recurrence interval of several thousands of years during the Holocene, show that the Central Iran plateau does not behave totally as a rigid block and that its moderate internal deformation is nonetheless responsible for a significant seismic hazard.
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 52
    Publication Date: 2012-03-13
    Description: SUMMARY Passive seismic interferometry is a new promising methodology for seismic exploration. Interferometry allows information about the subsurface structure to be extracted from ambient seismic noise. In this study, we apply the cross-correlation technique to approximately 25 hr of recordings of ambient seismic noise at the Ketzin experimental CO 2 storage site, Germany. Common source gathers were generated from the ambient noise for all available receivers along two seismic lines by cross-correlation of noise records. This methodology isolates the interstation Green's functions that can be directly compared to active source gathers. We show that the retrieved response includes surface waves, refracted waves and reflected waves. We use the dispersive behaviour of the retrieved surface waves to infer geological properties in the shallow subsurface and perform passive seismic imaging of the subsurface structure by processing the retrieved reflected waves.
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 53
    Publication Date: 2012-03-13
    Print ISSN: 1471-678X
    Electronic ISSN: 1471-6798
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 54
    Publication Date: 2012-03-14
    Description: SUMMARY Normal mode observations play an important role in studying broad-scale lateral variations in the Earth. Such studies require the calculation of accurate synthetic spectra in realistic earth models, and this remains a computationally challenging problem. Here, we describe a new implementation of the direct solution method for calculating normal mode spectra in laterally heterogeneous earth models. In this iterative direct solution method , the mode-coupling equations are solved in the frequency-domain using the preconditioned biconjugate gradient algorithm, and the time-domain solution is recovered using a numerical inverse Fourier transform. A number of example calculations are presented to demonstrate the accuracy and efficiency of the method for performing large ‘full coupling’ calculations as compared to methods based on matrix diagonalization and the traditional direct solution method.
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 55
    Publication Date: 2012-03-14
    Description: Telomeres, the ends of linear chromosomes, safeguard against genome instability. The enzyme responsible for extension of the telomere 3' terminus is the ribonucleoprotein telomerase. Whereas telomerase activity can be reconstituted in vitro with only the telomerase RNA (hTR) and telomerase reverse transcriptase (TERT), additional components are required in vivo for enzyme assembly, stability and telomere extension activity. One such associated protein, dyskerin, promotes hTR stability in vivo and is the only component to co-purify with active, endogenous human telomerase. We used oligonucleotide-based affinity purification of hTR followed by native gel electrophoresis and in-gel telomerase activity detection to query the composition of telomerase at different purification stringencies. At low salt concentrations (0.1 M NaCl), affinity-purified telomerase was ‘supershifted’ with an anti-dyskerin antibody, however the association with dyskerin was lost after purification at 0.6 M NaCl, despite the retention of telomerase activity and a comparable yield of hTR. The interaction of purified hTR and dyskerin in vitro displayed a similar salt-sensitive interaction. These results demonstrate that endogenous human telomerase, once assembled and active, does not require dyskerin for catalytic activity. Native gel electrophoresis may prove useful in the characterization of telomerase complexes under various physiological conditions.
    Keywords: Protein-nucleic acid interaction, Miscellaneous/other
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 56
    Publication Date: 2012-03-14
    Description: We describe an inexpensive and efficient method for generating functional pools of Dicer-substrate small interfering RNAs (siRNAs) in a single reaction tube. The method exploits a highly active form of the enzyme Dicer from Giardia lamblia , which is capable of accurately processing double-stranded RNA (dsRNA) into 25–27 nt RNA pools during in vitro transcription. The small RNAs produced function as substrates of human Dicer in vitro and induce gene silencing with potency equivalent to traditional siRNAs when introduced into mammalian cells. The overall reaction is simple, can be carried out in any laboratory with access to a PCR machine, and is amenable to high-throughput processes.
    Keywords: Microarray Technology, Nucleic Acid Enzymology
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 57
    Publication Date: 2012-03-14
    Description: Microglial cells are the main HIV-1 targets in the central nervous system (CNS) and constitute an important reservoir of latently infected cells. Establishment and persistence of these reservoirs rely on the chromatin structure of the integrated proviruses. We have previously demonstrated that the cellular cofactor CTIP2 forces heterochromatin formation and HIV-1 gene silencing by recruiting HDAC and HMT activities at the integrated viral promoter. In the present work, we report that the histone demethylase LSD1 represses HIV-1 transcription and viral expression in a synergistic manner with CTIP2. We show that recruitment of LSD1 at the HIV-1 proximal promoter is associated with both H3K4me3 and H3K9me3 epigenetic marks. Finally, our data suggest that LSD1-induced H3K4 trimethylation is linked to hSET1 recruitment at the integrated provirus.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 58
    Publication Date: 2012-03-14
    Description: This short review aims at presenting some recent illustrative examples of spontaneous nucleolipids self-assembly. High-resolution structural investigations reveal the diversity and complexity of assemblies formed by these bioinspired amphiphiles, resulting from the interplay between aggregation of the lipid chains and base–base interactions. Nucleolipids supramolecular assemblies are promising soft drug delivery systems, particularly for nucleic acids. Regarding prodrugs, squalenoylation is an innovative concept for improving efficacy and delivery of nucleosidic drugs.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 59
    Publication Date: 2012-03-14
    Description: Determining the underlying haplotypes of individual human genomes is an essential, but currently difficult, step toward a complete understanding of genome function. Fosmid pool-based next-generation sequencing allows genome-wide generation of 40-kb haploid DNA segments, which can be phased into contiguous molecular haplotypes computationally by Single Individual Haplotyping (SIH). Many SIH algorithms have been proposed, but the accuracy of such methods has been difficult to assess due to the lack of real benchmark data. To address this problem, we generated whole genome fosmid sequence data from a HapMap trio child, NA12878, for which reliable haplotypes have already been produced. We assembled haplotypes using eight algorithms for SIH and carried out direct comparisons of their accuracy, completeness and efficiency. Our comparisons indicate that fosmid-based haplotyping can deliver highly accurate results even at low coverage and that our SIH algorithm, ReFHap, is able to efficiently produce high-quality haplotypes. We expanded the haplotypes for NA12878 by combining the current haplotypes with our fosmid-based haplotypes, producing near-to-complete new gold-standard haplotypes containing almost 98% of heterozygous SNPs. This improvement includes notable fractions of disease-related and GWA SNPs. Integrated with other molecular biological data sets, this phase information will advance the emerging field of diploid genomics.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 60
    Publication Date: 2012-03-14
    Description: RNA tetraloops can recognize receptors to mediate long-range interactions in stable natural RNAs. In vitro selected GNRA tetraloop/receptor interactions are usually more ‘G/C-rich’ than their ‘A/U-rich’ natural counterparts. They are not as widespread in nature despite comparable biophysical and chemical properties. Moreover, while AA, AC and GU dinucleotide platforms occur in natural GAAA/11 nt receptors, the AA platform is somewhat preferred to the others. The apparent preference for ‘A/U-rich’ GNRA/receptor interactions in nature might stem from an evolutionary adaptation to avoid folding traps at the level of the larger molecular context. To provide evidences in favor of this hypothesis, several riboswitches based on natural and artificial GNRA receptors were investigated in vitro for their ability to prevent inter-molecular GNRA/receptor interactions by trapping the receptor sequence into an alternative intra-molecular pseudoknot. Extent of attenuation determined by native gel-shift assays and co-transcriptional assembly is correlated to the G/C content of the GNRA receptor. Our results shed light on the structural evolution of natural long-range interactions and provide design principles for RNA-based attenuator devices to be used in synthetic biology and RNA nanobiotechnology.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 61
    Publication Date: 2012-03-14
    Description: Many types of DNA structures are generated in response to DNA damage, repair and recombination that require processing via specialized nucleases. DNA hairpins represent one such class of structures formed during V(D)J recombination, palindrome extrusion, DNA transposition and some types of double-strand breaks. Here we present biochemical and genetic evidence to suggest that Pso2 is a robust DNA hairpin opening nuclease in budding yeast. Pso2 (SNM1A in mammals) belongs to a small group of proteins thought to function predominantly during interstrand crosslink (ICL) repair. In this study, we characterized the nuclease activity of Pso2 toward a variety of DNA substrates. Unexpectedly, Pso2 was found to be an efficient, structure-specific DNA hairpin opening endonuclease. This activity was further shown to be required in vivo for repair of chromosomal breaks harboring closed hairpin ends. These findings provide the first evidence that Pso2 may function outside ICL repair and open the possibility that Pso2 may function at least in part during ICL repair by processing DNA intermediates including DNA hairpins or hairpin-like structures.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 62
    Publication Date: 2012-03-14
    Description: The mom gene of bacteriophage Mu encodes an enzyme that converts adenine to N 6 -(1-acetamido)-adenine in the phage DNA and thereby protects the viral genome from cleavage by a wide variety of restriction endonucleases. Mu-like prophage sequences present in Haemophilus influenzae Rd (FluMu), Neisseria meningitidis type A strain Z2491 (Pnme1) and H. influenzae biotype aegyptius ATCC 11116 do not possess a Mom-encoding gene. Instead, at the position occupied by mom in Mu they carry an unrelated gene that encodes a protein with homology to DNA adenine N 6 -methyltransferases ( hin1523 , nma1821 , hia5 , respectively). Products of the hin1523 , hia5 and nma1821 genes modify adenine residues to N 6 -methyladenine, both in vitro and in vivo . All of these enzymes catalyzed extensive DNA methylation; most notably the Hia5 protein caused the methylation of 61% of the adenines in DNA. Kinetic analysis of oligonucleotide methylation suggests that all adenine residues in DNA, with the possible exception of poly(A)-tracts, constitute substrates for the Hia5 and Hin1523 enzymes. Their potential ‘sequence specificity’ could be summarized as AB or BA (where B = C, G or T). Plasmid DNA isolated from Escherichia coli cells overexpressing these novel DNA methyltransferases was resistant to cleavage by many restriction enzymes sensitive to adenine methylation.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 63
    Publication Date: 2012-03-14
    Description: The influenza A virus genome consists of eight viral RNAs (vRNAs) that form viral ribonucleoproteins (vRNPs). Even though evidence supporting segment-specific packaging of vRNAs is accumulating, the mechanism ensuring selective packaging of one copy of each vRNA into the viral particles remains largely unknown. We used electron tomography to show that the eight vRNPs emerge from a common ‘transition zone’ located underneath the matrix layer at the budding tip of the virions, where they appear to be interconnected and often form a star-like structure. This zone appears as a platform in 3D surface rendering and is thick enough to contain all known packaging signals. In vitro , all vRNA segments are involved in a single network of intermolecular interactions. The regions involved in the strongest interactions were identified and correspond to known packaging signals. A limited set of nucleotides in the 5' region of vRNA 7 was shown to interact with vRNA 6 and to be crucial for packaging of the former vRNA. Collectively, our findings support a model in which the eight genomic RNA segments are selected and packaged as an organized supramolecular complex held together by direct base pairing of the packaging signals.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 64
    Publication Date: 2012-03-14
    Description: Anti-miRs are oligonucleotide inhibitors complementary to miRNAs that have been used extensively as tools to gain understanding of specific miRNA functions and as potential therapeutics. We showed previously that peptide nucleic acid (PNA) anti-miRs containing a few attached Lys residues were potent miRNA inhibitors. Using miR-122 as an example, we report here the PNA sequence and attached amino acid requirements for efficient miRNA targeting and show that anti-miR activity is enhanced substantially by the presence of a terminal-free thiol group, such as a Cys residue, primarily due to better cellular uptake. We show that anti-miR activity of a Cys-containing PNA is achieved by cell uptake through both clathrin-dependent and independent routes. With the aid of two PNA analogues having intrinsic fluorescence, thiazole orange (TO)-PNA and [bis- o -(aminoethoxy)phenyl]pyrrolocytosine (BoPhpC)-PNA, we explored the subcellular localization of PNA anti-miRs and our data suggest that anti-miR targeting of miR-122 may take place in or associated with endosomal compartments. Our findings are valuable for further design of PNAs and other oligonucleotides as potent anti-miR agents.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 65
    Publication Date: 2012-03-14
    Description: Translation initiation factor eIF3 acts as the key orchestrator of the canonical initiation pathway in eukaryotes, yet its structure is greatly unexplored. We report the 2.2 Å resolution crystal structure of the complex between the yeast seven-bladed β-propeller eIF3i/TIF34 and a C-terminal α-helix of eIF3b/PRT1, which reveals universally conserved interactions. Mutating these interactions displays severe growth defects and eliminates association of eIF3i/TIF34 and strikingly also eIF3g/TIF35 with eIF3 and 40S subunits in vivo . Unexpectedly, 40S-association of the remaining eIF3 subcomplex and eIF5 is likewise destabilized resulting in formation of aberrant pre-initiation complexes (PICs) containing eIF2 and eIF1, which critically compromises scanning arrest on mRNA at its AUG start codon suggesting that the contacts between mRNA and ribosomal decoding site are impaired. Remarkably, overexpression of eIF3g/TIF35 suppresses the leaky scanning and growth defects most probably by preventing these aberrant PICs to form. Leaky scanning is also partially suppressed by eIF1, one of the key regulators of AUG recognition, and its mutant sui1 G107R but the mechanism differs. We conclude that the C-terminus of eIF3b/PRT1 orchestrates co-operative recruitment of eIF3i/TIF34 and eIF3g/TIF35 to the 40S subunit for a stable and proper assembly of 48S pre-initiation complexes necessary for stringent AUG recognition on mRNAs.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 66
    Publication Date: 2012-03-14
    Description: The misreplication of damaged DNA is an important biological process that produces numerous adverse effects on human health. This report describes the synthesis and characterization of a non-natural nucleotide, designated 3-ethynyl-5-nitroindolyl-2'-deoxyriboside triphosphate (3-Eth-5-NITP), as a novel chemical reagent that can probe and quantify the misreplication of damaged DNA. We demonstrate that this non-natural nucleotide is efficiently inserted opposite an abasic site, a commonly formed and potentially mutagenic non-instructional DNA lesion. The strategic placement of the ethynyl moiety allows the incorporated nucleoside triphosphate to be selectively tagged with an azide-containing fluorophore using ‘click’ chemistry. This reaction provides a facile way to quantify the extent of nucleotide incorporation opposite non-instructional DNA lesions. In addition, the incorporation of 3-Eth-5-NITP is highly selective for an abasic site, and occurs even in the presence of a 50-fold molar excess of natural nucleotides. The biological applications of using 3-Eth-5-NITP as a chemical probe to monitor and quantify the misreplication of non-instructional DNA lesions are discussed.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 67
    Publication Date: 2012-03-16
    Description: SUMMARY We report on a unique set of infrasound observations from a single earthquake, the 2011 January 3 Circleville earthquake ( M w 4.7, depth of 8 km), which was recorded by nine infrasound arrays in Utah. Based on an analysis of the signal arrival times and backazimuths at each array, we find that the infrasound arrivals at six arrays can be associated to the same source and that the source location is consistent with the earthquake epicentre. Results of propagation modelling indicate that the lack of associated arrivals at the remaining three arrays is due to path effects. Based on these findings we form the working hypothesis that the infrasound is generated by body waves causing the epicentral region to pump the atmosphere, akin to a baffled piston. To test this hypothesis, we have developed a numerical seismoacoustic model to simulate the generation of epicentral infrasound from earthquakes. We model the generation of seismic waves using a 3-D finite difference algorithm that accounts for the earthquake moment tensor, source time function, depth and local geology. The resultant acceleration–time histories on a 2-D grid at the surface then provide the initial conditions for modelling the near-field infrasonic pressure wave using the Rayleigh integral. Finally, we propagate the near-field source pressure through the Ground-to-Space atmospheric model using a time-domain Parabolic Equation technique. By comparing the resultant predictions with the six epicentral infrasound observations from the 2011 January 3, Circleville earthquake, we show that the observations agree well with our predictions. The predicted and observed amplitudes are within a factor of 2 (on average, the synthetic amplitudes are a factor of 1.6 larger than the observed amplitudes). In addition, arrivals are predicted at all six arrays where signals are observed, and importantly not predicted at the remaining three arrays. Durations are typically predicted to within a factor of 2, and in some cases much better. These results suggest that measured infrasound from the Circleville earthquake is consistent with the generation of infrasound from body waves in the epicentral region.
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 68
    Publication Date: 2012-03-16
    Description: SUMMARY We present new dedicated core surface field models spanning the decade from 2000.0 to 2010.0. These models, called gufm-sat , are based on CHAMP, Ørsted and SAC-C satellite observations along with annual differences of processed observatory monthly means. A spatial parametrization of spherical harmonics up to degree and order 24 and a temporal parametrization of sixth-order B-splines with 0.25 yr knot spacing is employed. Models were constructed by minimizing an absolute deviation measure of misfit along with measures of spatial and temporal complexity at the core surface. We investigate traditional quadratic or maximum entropy regularization in space, and second or third time derivative regularization in time. Entropy regularization allows the construction of models with approximately constant spectral slope at the core surface, avoiding both the divergence characteristic of the crustal field and the unrealistic rapid decay typical of quadratic regularization at degrees above 12. We describe in detail aspects of the models that are relevant to core dynamics. Secular variation and secular acceleration are found to be of lower amplitude under the Pacific hemisphere where the core field is weaker. Rapid field evolution is observed under the eastern Indian Ocean associated with the growth and drift of an intense low latitude flux patch. We also find that the present axial dipole decay arises from a combination of subtle changes in the southern hemisphere field morphology.
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 69
    Publication Date: 2012-03-16
    Description: SUMMARY We present a novel frequency-domain inverse solution to recover the 3-D electrical conductivity distribution in the mantle. The solution is based on analysis of local C -responses. It exploits an iterative gradient-type method—limited-memory quasi-Newton method—for minimizing the penalty function consisting of data misfit and regularization terms. The integral equation code is used as a forward engine to calculate responses and data misfit gradients during inversion. An adjoint approach is implemented to compute misfit gradients efficiently. Further improvements in computational load come from parallelizing the scheme with respect to frequencies, and from setting the most time-consuming part of the forward calculations—calculation of Green’s tensors—apart from the inversion loop. Convergence, performance, and accuracy of our 3-D inverse solution are demonstrated with a synthetic numerical example. A companion paper applies the strategy set forth here to real data.
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 70
    Publication Date: 2012-02-02
    Description: This paper presents a benchmarking, performance analysis and optimization study of the OP2 ‘active’ library, which provides an abstraction framework for the parallel execution of unstructured mesh applications. OP2 aims to decouple the scientific specification of the application from its parallel implementation, and thereby achieve code longevity and near-optimal performance through re-targeting the application to execute on different multi-core/many-core hardware. Runtime performance results are presented for a representative unstructured mesh application on a variety of many-core processor systems, including traditional X86 architectures from Intel (Xeon based on the older Penryn and current Nehalem micro-architectures) and GPU offerings from NVIDIA (GTX260, Tesla C2050). Our analysis demonstrates the contrasting performance between the use of CPU (OpenMP) and GPU (CUDA) parallel implementations for the solution of an industrial-sized unstructured mesh consisting of about 1.5 million edges. Results show the significance of choosing the correct partition and thread-block configuration, the factors limiting the GPU performance and insights into optimizations for improved performance.
    Print ISSN: 0010-4620
    Electronic ISSN: 1460-2067
    Topics: Computer Science
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 71
    Publication Date: 2012-02-02
    Description: In this paper, we describe the integrated power, area and thermal modeling framework in the structural simulation toolkit (SST) for large-scale high performance computer simulation. It integrates various power and thermal modeling tools and computes run-time energy dissipation for core, network on chip, memory controller and shared cache. It also provides functionality to update the leakage power as temperature changes. We illustrate the utilization of the framework by applying it to explore interconnect options in manycore systems with consideration of temperature variation and leakage feedback. We compare power, energy-delay-area product (EDAP) and energy-delay product (EDP) of four manycore configurations-1 core, 2 cores, 4 cores and 8 cores per cluster. Results from simulation with or without consideration of temperature variation both show that the 4-core per cluster configuration has the best EDAP and EDP. Even so, considering that temperature variation increases total power dissipation, we demonstrate the importance of considering temperature variation in the design flow. With this power, area and thermal modeling capability, the SST can be used for hardware/software co-design of future exascale systems.
    Print ISSN: 0010-4620
    Electronic ISSN: 1460-2067
    Topics: Computer Science
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 72
    Publication Date: 2012-02-02
    Description: With the advent of heterogeneous computing systems consisting of multi-core central processing units (CPUs) and many-core graphics processing units (GPUs), robust methods are needed to facilitate fair benchmark comparisons between different systems. In this paper, we present a benchmarking methodology for measuring a number of performance metrics for heterogeneous systems. Methods for comparing performance and energy efficiency are included. Consideration is given to further metrics, such as associated running costs and carbon emissions. We give a case study for these metrics applied to Bristol University Docking engine, a molecular mechanics-based docking application that has been ported to open computing language at the University of Bristol. Results are included for both AMD and NVIDIA GPUs, and for a highly optimized code on the latest x86 CPUs.
    Print ISSN: 0010-4620
    Electronic ISSN: 1460-2067
    Topics: Computer Science
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 73
    Publication Date: 2012-02-02
    Description: Java embedded systems often include Java middleware classes installed on the client device. For higher performance, they can be compiled into machine code before runtime using an ahead-of-time compiler (AOTC). There are many approaches to AOTC, yet a bytecode-to-C (b-to-C) AOTC which translates the bytecode into the C code and then compiles it using an existing optimizing compiler such as gcc would be the most straightforward one. This paper explores a few important design and optimization issues of a b-to-C AOTC, including the compilation form for the translated C code, the call interfaces among translated and interpreted Java methods, and Java-specific optimizations by the AOTC that can complement the gcc optimizations. We evaluate these issues with our b-to-C AOTC implemented on the MIPS platform for the Sun's CDC VM to understand their performance impact.
    Print ISSN: 0010-4620
    Electronic ISSN: 1460-2067
    Topics: Computer Science
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 74
    Publication Date: 2012-02-02
    Print ISSN: 0010-4620
    Electronic ISSN: 1460-2067
    Topics: Computer Science
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 75
    Publication Date: 2012-02-07
    Print ISSN: 0272-4960
    Electronic ISSN: 1464-3634
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 76
    Publication Date: 2012-02-08
    Description: Let K be a convex body in R n . We introduce a new affine invariant, which we call K , that can be found in three different ways: as a limit of normalized L p -affine surface areas; as the relative entropy of the cone measure of K and the cone measure of K °; as the limit of the volume difference of K and L p -centroid bodies. We investigate properties of K and of related new invariant quantities. In particular, we show new affine isoperimetric inequalities and we show an ‘information inequality’ for convex bodies.
    Print ISSN: 0024-6115
    Electronic ISSN: 1460-244X
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 77
    Publication Date: 2012-02-08
    Description: We establish the precise bounds for the amount of determinacy provable in second-order arithmetic. We show that, for every natural number n , second-order arithmetic can prove that determinacy holds for Boolean combinations of n many classes, but it cannot prove that all finite Boolean combinations of classes are determined. More specifically, we prove that , but that , where is the n th level in the difference hierarchy of classes. We also show some conservativity results that imply that reversals for the theorems above are not possible. We prove that, for every true 1 4 sentence T (as, for instance, -DET) and every and .
    Print ISSN: 0024-6115
    Electronic ISSN: 1460-244X
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 78
    Publication Date: 2012-02-11
    Description: Longitudinal or hierarchical data are often observed in forestry, which can pose both challenges and opportunities when performing statistical analyses. The current standard approach for analysing these types of data is mixed-effects models under the frequentist paradigm. Bayesian techniques have several advantages when compared with traditional approaches, but their use in forestry has been relatively limited. In this paper, we propose a Bayesian solution to non-linear mixed-effects models for longitudinal data in forestry. We demonstrate the Bayesian modelling process using individual tree height–age data for balsam fir ( Abies balsamea (L.)) collected from eastern Maine. Due to its frequent utilization in modelling dominant tree height growth over time, we choose to examine models based on the Chapman–Richards function. We established four different model formulations, each having varying subject-specific parameters, which we estimated using both frequentist and Bayesian approaches. We found the estimation results to be quite close between the two methods. In addition, an important feature of the Bayesian method is the unified manner in which estimation and prediction are handled. Specifically, local parameters can be predicted for a new dataset after setting the posterior distributions from the estimation stage as new priors in the prediction phase.
    Print ISSN: 0015-752X
    Electronic ISSN: 1464-3626
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 79
    Publication Date: 2012-02-11
    Description: This study compares the financial return of converting old-growth boreal stands into even-aged stands to that of two approaches of selection cutting in Quebec (Canada). In this region, old-growth stands are usually harvested by completely removing the canopy while protecting the abundant advance regeneration, an approach known as careful logging around advance growth (CLAAG). These approaches were compared using a time frame of over 200 years. Consideration is given to the majority of the operating costs leading to end products. The financial analysis integrates Monte Carlo simulations, making it possible to consider the uncertainty associated with variables. The net present values (NPVs) are then associated with a distribution of probabilities. The results show that the probabilities of obtaining positive NPVs are high for all treatments, suggesting that selection cutting approaches can be appropriate alternatives to CLAAG for some stands. Depending on the criteria used, the CLAAG cut or one of the selection cuts show the best performances. In fact, the results of the financial study show that in the future, selection cutting approaches will be more profitable than CLAAG but still less than present CLAAG operations. This occurs because, according to the current yield curves and rotation ages, future stands managed with CLAAG will have smaller and less valuable trees than in the primary forest and in stands managed with the selection system.
    Print ISSN: 0015-752X
    Electronic ISSN: 1464-3626
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 80
    Publication Date: 2012-02-11
    Description: There is a growing interest in the feasibility of establishing ‘Carbon’ forests where carbon sinks are created by maintaining forest stands out to considerable ages. In New Zealand, Pinus radiata (D. Don) is usually grown over 25- to 30-year rotations; the main aim of this paper is to examine the potential to maintain stands to 60 years or more. There were over 140 permanent sample plots in New Zealand that were maintained for at least 50 years. These data were examined to verify that growth can be sustained over this period. Net basal area per hectare and mean-top-height are graphically demonstrated to follow expected growth paths with no signs of senescence occurring. Stems per hectare loss is shown to be sometimes high, especially with dense stockings, but virtually all dying trees are small suppressed stems, so the impact on basal area yield at maturity is minimal. It is concluded that growing radiata pine on a rotation of 60 years is feasible, and it may be possible to use much longer rotations.
    Print ISSN: 0015-752X
    Electronic ISSN: 1464-3626
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 81
    Publication Date: 2012-02-11
    Description: The effects of site preparation practices (drainage, mounding and fertilization) on the fluxes from the soil surface of carbon dioxide (CO 2 ), methane (CH 4 ) and nitrous oxide (N 2 O) were studied on an organic-rich peaty gley soil at Harwood Forest, north-east England. Drained plots had significantly higher CO 2 fluxes but significantly lower CH 4 fluxes compared with undrained plots, while N 2 O emissions were not affected by drainage. Mounding caused significantly higher CH 4 emissions, while it significantly reduced N 2 O emissions. Fertilization caused significant increases in emissions of CO 2 , CH 4 and N 2 O. In terms of overall greenhouse warming potential, drainage and fertilization increased CO 2 -equivalent emissions by ~18–29 and 7–23 per cent, respectively, while mounding reduced CO 2 -equivalent emissions by ~8 per cent in year 1, but had no effect on emissions in year 2 of study. Soil temperature was the main environmental variable controlling CO 2 emissions, while CH 4 was controlled primarily by water table depth. Nitrous oxide emissions responded to changes in soil temperature and water table depth. In the short term, drainage and fertilization contributed to accelerating greenhouse gas emissions significantly, although their long-term effects are likely moderated by accelerating carbon accumulation in the tree biomass. Long-term studies are required to assess the cumulative impacts of site preparation practices during the whole rotation cycle.
    Print ISSN: 0015-752X
    Electronic ISSN: 1464-3626
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 82
    Publication Date: 2012-02-11
    Description: As signatories to the United Nation Framework Convention on Climate Change, the US has been estimating standing dead tree (SDT) carbon (C) stocks using a model based on live tree attributes. The USDA Forest Service began sampling SDTs nationwide in 1999. With comprehensive field data now available, the objective of this study was to compare field- and model-based estimates of SDT C stocks across the US to evaluate potential directions for improving National Greenhouse Gas Inventory (NGHGI) reporting and C dynamics research. Field inventory data indicated that most forests have relatively little SDT C stocks (〈1 Mg/ha), whereas large SDT C stocks (〉25 Mg/ha) are infrequent. Models used for past NGHGIs to predict SDT C stocks do not accurately reflect what was observed in inventory plots, resulting in an overestimation (~100 per cent) of SDT C stocks at the national scale. These results indicate that the current estimate of the Nation’s total forest C stock is overestimated by ~4.2 per cent due to overestimation of SDT C stocks that are a relatively small component of the total forest C stock. A field-based approach is suggested for use in future C reporting efforts to reduce estimation bias.
    Print ISSN: 0015-752X
    Electronic ISSN: 1464-3626
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 83
    Publication Date: 2012-02-11
    Description: Airborne laser scanning data and corresponding field data were acquired from boreal forests in Norway and Sweden, coniferous and broadleaved forests in Germany and tropical pulpwood plantations in Brazil. Treetop positions were extracted using six different algorithms developed in Finland, Germany, Norway and Sweden, and the accuracy of tree detection and height estimation was assessed. Furthermore, the weaknesses and strengths of the methods under different types of forest were analyzed. The results showed that forest structure strongly affected the performance of all algorithms. Particularly, the success of tree detection was found to be dependent on tree density and clustering. The differences in performance between methods were more pronounced for tree detection than for height estimation. The algorithms showed a slightly better performance in the conditions for which they were developed, while some could be adapted by different parameterization according to training with local data. The results of this study may help guiding the choice of method under different forest types and may be of great value for future refinement of the single-tree detection algorithms.
    Print ISSN: 0015-752X
    Electronic ISSN: 1464-3626
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 84
    Publication Date: 2012-02-11
    Description: Silvicultural systems which retain canopy cover during the regeneration phase have become an increasingly important form of management, but their effectiveness in controlling weed species has not been extensively studied. The development of bramble, which is a widespread competitive weed species, was observed within a c . 35-year-old Corsican pine stand thinned to remove 10, 20, 40 and 80 per cent of basal area. Cover, height and numbers of inflorescences and berries were recorded in each of the 3 years following thinning and were generally ranked according to intensity of thinning, but there were no significant differences between treatments. Shoot length, estimated using a grid-intersection method, was significantly lower in the 10 per cent compared with the 40 and 80 per cent thinning treatments. The initial length of bramble shoot present, and basal area and number of trees remaining could be used in various combinations to predict cover, height and shoot length. Although the bramble thicket was generally less well developed in the less-intense thinning treatments, these did not appear to enhance the establishment of trees. Seedlings grew best in the 80 per cent treatment and overall their mean heights were generally lower than that of bramble. Retention of overstorey cover in order to suppress bramble growth and promote tree seedling establishment during forest regeneration may not succeed.
    Print ISSN: 0015-752X
    Electronic ISSN: 1464-3626
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 85
    Publication Date: 2012-02-11
    Description: Three experiments were established in the 1990s to examine the impact of complete residue (brash) and above-ground biomass removal (i.e. ‘whole-tree harvesting’, WTH) at clearfelling on the subsequent growth and yield of replanted Sitka spruce ( Picea sitchensis ). The sites were of varying fertility; two would now be considered to be of ‘medium’ risk for brash removal, while one would be a ‘high’-risk site. The interactions between brash removal and regular remedial fertilizer applications and weed control regimes were also investigated at each site. After 10 years, trees had been successfully established at all sites, and in most cases, the treatments were close to canopy closure. The main effects observed at all sites were due to brash retention and fertilizer application. The benefits from the former were not evident until the last stages of the establishment period, whereas benefits from fertilizer application were evident once the trees had reached 5–6 years of age. The impacts of weed control were inconsistent, providing temporary benefits on the more fertile sites, and having a negative effect on the poorest site, primarily because the herbicide regime favoured the development of ericaceous vegetation which competed with the planted trees for nutrients. After 10 years at the two medium-risk sites, the difference in growth between plots with brash retained and those where brash was removed was 5–9 per cent for height growth and 5–7 per cent for diameter. However, at the poorest site, the equivalent differences were ~9 per cent and 19 per cent. The results show that the impact of brash removal due to WTH are significantly affected by site type and soil fertility and also that it may take nearly a decade before the impacts of such practices are evident.
    Print ISSN: 0015-752X
    Electronic ISSN: 1464-3626
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 86
    Publication Date: 2012-02-11
    Description: Policy makers, scientists and civil society are involved in the development of criteria and indicators for sustainable forest management (SFM), reflecting the growing worldwide demand for addressing sustainable development and environmental governance management goals. Such frameworks have been largely derived from expert-led or community-based approaches. This article details the identification process of criteria and indicators (C & I) based on the international principles of SFM through the analysis of a hybrid approach that uses both a top-down (TD) and a bottom-up (BU) approach. The aim of this article is to discuss how the two approaches have worked to incorporate the different views, opinions and experiences of experts and stakeholders. National-level C & I are then compared with those at the local level, making specific reference to sustainable community forest (CF) management. For the TD approach, a Delphi survey was conducted where 121 experts shared their knowledge, experience and judgements in assessing a set of 72 indicators with regard to the applicability, practicality and importance of national, regional and CF management in Nepal. For the BU approach, C & I for CF management were developed with the direct involvement of various stakeholders. It was shown that such a hybrid approach is feasible from a methodological point of view, but a framework is needed by the government to more fully utilize the opportunities of the C & I development process in the SFM context. The results of this study also help to bridge the gap between the ad hoc planning of decision makers and the requirement for a holistic management system, which includes participatory processes. Based on the conclusions of this study, general recommendations for the methodological design of C & I development in similar studies are given.
    Print ISSN: 0015-752X
    Electronic ISSN: 1464-3626
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 87
    facet.materialart.
    Unknown
    Oxford University Press
    In: Forestry
    Publication Date: 2012-02-11
    Print ISSN: 0015-752X
    Electronic ISSN: 1464-3626
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 88
    Publication Date: 2012-02-14
    Description: SUMMARY In places where sedimentation and erosion compete at fast rates, part of the record of past earthquakes on faults may be buried, hence hidden, in the first few metres below the surface. We developed a novel form of palaeoseismology, of geophysical type, based on the use of a dense pseudo-3-D Ground Penetrating Radar (GPR) survey to investigate such possible buried earthquake traces, on a long, fast-slipping strike-slip fault (Hope fault, New Zealand), at a site (Terako) where marked alluvial conditions prevail. We first used LiDAR data to analyse the ground surface morphology of the 2 km 2 site at the greatest resolution. Nineteen morphological markers were observed, mainly alluvial terrace risers and small stream channels that are all dextrally offset by the fault by amounts ranging between 3 and 200 m. The measurements document about 10 past earthquake slip events with a mean coseismic slip of 3.3 ± 1 m, with the most recent earthquake event having a slip of 3 ± 0.5 m. We then investigated a detailed area of the site (400 × 600 m 2 ) with pseudo-3-D GPR. We measured 56, ≈ 400 m long, 5–10 m spaced GPR profiles (250 MHz), parallel to the fault and evenly distributed on either side. The analysis revealed the existence of a palaeosurface buried at about 3 m depth, corresponding to the top of alluvial terraces of different ages. That buried surface is incised by a dense network of stream channels that are all dextrally offset by the fault. We measured 48 lateral offsets in the buried channel network, more than twice than at the surface. These offsets range between 6 and 108 m, as observed at the surface, yet provide a more continuous record of the fault slip. The similarity of the successive slip increments suggests a slip per event averaging 4.4 ± 1 m, fairly similar to that estimated from surface data. From the total ‘surface and buried’ 67 offset collection, we infer that a minimum of 30 large earthquakes have broken the Hope fault at the Terako site in the last about 6–7 kyr, with an average coseismic slip of 3.2 ± 1 m, a minimum average recurrence time of about 200 yr, and a magnitude of at least M w 7.0–7.4. Our study therefore confirms that part of the record of past earthquakes may indeed reside in the first few metres below the surface, where it may be explored with geophysical, GPR-based palaeoseismology. Developing such a new palaeoseismological tool should provide rich information that may complement surface observations and help to document the past earthquakes on faults.
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 89
    Publication Date: 2012-02-14
    Description: Not simply set out in accompaniment of the Greek geometrical text, the diagram also is coaxed into existence manually (using straightedge and compasses) by commands in the text. The marks that a diligent reader thus sequentially produces typically sum, however, to a figure more complex than the provided one and also not (as it is) artful for being synoptically instructive. To provide a figure artfully is to balance multiple desiderata, interlocking the timelessness of insight with the temporality of construction. Our account of the diagram complements those of Manders and Macbeth by more strongly emphasizing practical synthesis.
    Print ISSN: 0031-8019
    Electronic ISSN: 1744-6406
    Topics: Mathematics , Philosophy
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 90
    Publication Date: 2012-02-14
    Description: Tennenbaum's Theorem yields an elegant characterisation of the standard model of arithmetic. Several authors have recently claimed that this result has important philosophical consequences: in particular, it offers us a way of responding to model-theoretic worries about how we manage to grasp the standard model. We disagree. If there ever was such a problem about how we come to grasp the standard model, then Tennenbaum's Theorem does not help. We show this by examining a parallel argument, from a simpler model-theoretic result.
    Print ISSN: 0031-8019
    Electronic ISSN: 1744-6406
    Topics: Mathematics , Philosophy
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 91
    facet.materialart.
    Unknown
    Oxford University Press
    Publication Date: 2012-02-14
    Description: The paper discusses Husserl's phenomenology of mathematics in his Formal and Transcendental Logic (1929). In it Husserl seeks to provide descriptive foundations for mathematics. As sciences and mathematics are normative activities Husserl's attempt is also to describe the norms at work in these disciplines. The description shows that mathematics can be given in several different ways. The phenomenologist's task is to examine whether a given part of mathematics is genuine according to the norms that pertain to the approach in question. The paper will then examine the intuitionistic, formalistic, and structural features of Husserl's philosophy of mathematics.
    Print ISSN: 0031-8019
    Electronic ISSN: 1744-6406
    Topics: Mathematics , Philosophy
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 92
    Publication Date: 2012-02-14
    Print ISSN: 0031-8019
    Electronic ISSN: 1744-6406
    Topics: Mathematics , Philosophy
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 93
    Publication Date: 2012-02-14
    Print ISSN: 0031-8019
    Electronic ISSN: 1744-6406
    Topics: Mathematics , Philosophy
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 94
    facet.materialart.
    Unknown
    Oxford University Press
    Publication Date: 2012-02-14
    Description: Linnebo and Pettigrew's critique in this journal of categorical foundations well emphasizes that the particulars of various categorical foundations matter, and that mathematical practice must be a major consideration. But several categorists named by the authors as proposing categorical foundations do not propose foundations, notably Awodey, and the article's description of current textbook practice seems inaccurate. They say that categorical foundations have justificatory autonomy if and only if mathematics can be justified simply by its practice. Do they seriously believe philosophers may be able to justify some currently unpractised mathematics better than current practice justifies itself?
    Print ISSN: 0031-8019
    Electronic ISSN: 1744-6406
    Topics: Mathematics , Philosophy
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 95
    Publication Date: 2012-02-14
    Print ISSN: 0031-8019
    Electronic ISSN: 1744-6406
    Topics: Mathematics , Philosophy
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 96
    Publication Date: 2012-02-14
    Print ISSN: 0031-8019
    Electronic ISSN: 1744-6406
    Topics: Mathematics , Philosophy
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 97
    Publication Date: 2012-02-14
    Description: Given a Calderón–Zygmund singular integral operator, it is an open question whether the Fefferman inequality holds true with u as an arbitrary weight. This inequality is known as the Muckenhoupt–Wheeden conjecture. In this paper we prove that, for a wider class of operators called Rubio de Francia operators, if || u || ≤1, then where the function is slightly bigger than the identity. Applications of this inequality in the setting of rearrangement invariant spaces are given.
    Print ISSN: 0033-5606
    Electronic ISSN: 1464-3847
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 98
    Publication Date: 2012-02-14
    Description: We show that whenever m ≤ n , the space of all continuous rational maps from CP m to CP n has the same homology as the space of all continuous maps between these spaces in dimensions smaller than d (2 n – 2 m + 1) – 1. This improves the result of the paper ‘Spaces of rational maps and the Stone–Weierstrass theorem’ ( Topology 45 (2006), 281–293).
    Print ISSN: 0033-5606
    Electronic ISSN: 1464-3847
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 99
    facet.materialart.
    Unknown
    Oxford University Press
    Publication Date: 2012-02-14
    Description: A theorem of Davenport, Mirsky, Newman and Rado shows that there does not exist an exact covering system with distinct moduli. Motivated by this, we raise the question whether or not this is true for covering systems in algebraic number fields. We provide an affirmative answer for certain quadratic fields.
    Print ISSN: 0033-5606
    Electronic ISSN: 1464-3847
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 100
    facet.materialart.
    Unknown
    Oxford University Press
    Publication Date: 2012-02-14
    Description: The caustic of a smooth surface in the Euclidean 3-space is the envelope of the normal rays to the surface. It is also the locus of the centres of curvature (the focal points) of the surface. This is why it is also referred to as the focal set of the surface. It has Lagrangian singularities and its generic models are given in [V. I. Arnol’d, S. M. Gusein-Zade and A. N. Varchenko, Singularities of Differentiable Maps , Vol. I, Birkhäuser, Boston, 1986]. The aim of this paper is to define the caustic C ( M ) of a smooth surface M embedded in the Minkowski 3-space and to study its geometry. We denote by the locus of degeneracy (LD) the locus of points on M where the metric is degenerate. If M is a closed surface then its LD is not empty. At a point on the LD the ‘normal’ line to M is lightlike and is tangent to M . Also, the focal set of M is not defined at points on the LD. We define the caustic of M as the bifurcation set of the family of distance-squared functions on M . Then C ( M ) coincides with the focal set of M \ LD and provides an extension of the focal set to the LD. We study the local behaviour of the metric on C ( M ).
    Print ISSN: 0033-5606
    Electronic ISSN: 1464-3847
    Topics: Mathematics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...