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  • Articles  (68,534)
  • Springer  (45,274)
  • American Physical Society  (17,979)
  • National Academy of Sciences  (3,702)
  • BioMed Central
  • International Union of Crystallography (IUCr)
  • PANGAEA
  • 2005-2009  (68,534)
  • 1955-1959
  • 2006  (68,534)
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  • 2005-2009  (68,534)
  • 1955-1959
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  • 1
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    PANGAEA
    In:  EPIC3Bremerhaven, PANGAEA
    Publication Date: 2021-02-11
    Repository Name: EPIC Alfred Wegener Institut
    Type: PANGAEA Documentation , notRev
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  • 2
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    PANGAEA
    In:  EPIC3Bremerhaven, PANGAEA
    Publication Date: 2021-02-11
    Repository Name: EPIC Alfred Wegener Institut
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  • 3
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    PANGAEA
    In:  EPIC3Bremerhaven, PANGAEA
    Publication Date: 2021-02-18
    Repository Name: EPIC Alfred Wegener Institut
    Type: PANGAEA Documentation , notRev
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  • 4
    Publication Date: 2017-04-04
    Description: Secondary minerals of a 91 meters-thick sequence of pillow basalts cored during ODP Leg 195 (Site 1201, West Philippine Basin) were investigated to reconstruct the hydrothermal alteration history and regime. The basement was first buried by red clays, and then by a thick turbidite sequence, thereby isolating it from seawater. The basalts are primitive to moderately fractionated, texturally variable from hypocrystalline and spherulitic to intersertal, sub-ophitic and intergranular. Relic primary minerals are plagioclase, clinopyroxene and opaques. Hydrothermal alteration pervasively affected the basalts, generating secondary clay minerals (mostly glauconite, minor Al-saponite and Fe-beidellite, Na-zeolites, minor alkali-feldspar and calcite. The secondary mineral paragenesis and mutual relationships suggest that the hydrothermal alteration occurred under zeolite-facies conditions, at temperatures 100-150 C. The main phase of alteration occurred under oxidizing conditions, with a high seawater rock ratio, in an open-circulation regime, at temperatures of 30-60 C, with precipitation of abundant glauconite and iddingsite. A later stage of alteration occurred at ca. 70 C, with precipitation of abundant Na-zeolites and minor calcite, in a more restricted circulation regime as a consequence of basement burial under the sedimentary cover, which supplied an altered, Ca-rich and Magma-sulfate-poor water causing precipitation of almost pure calcite.
    Description: Published
    Description: 87-112
    Description: open
    Keywords: west Philippine ; Mineral chemistry ; 04. Solid Earth::04.04. Geology::04.04.05. Mineralogy and petrology ; 04. Solid Earth::04.04. Geology::04.04.07. Rock geochemistry
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 5
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    PANGAEA
    In:  EPIC3UNIVERSITE DE LA REUNION U.F.R. SCIENCES ET TECHNOLOGIES LABORATOIRE D ECOLOGIE MARINE THESE Pour obtenir le grade de DOCTEUR DE L UNIVERSITE DE LA REUNION., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: PANGAEA Documentation , notRev
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  • 6
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    PANGAEA
    In:  EPIC3Bremerhaven, PANGAEA
    Publication Date: 2015-02-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: PANGAEA Documentation , notRev
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  • 7
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    PANGAEA
    In:  EPIC3Leibniz-Institute of Marine Sciences, Kiel, Germany., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 8
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    PANGAEA
    In:  EPIC3Trimble Navigation Limited, V3.10, Rev. A, March 2006., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 9
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    PANGAEA
    In:  EPIC3Limnol. Oceanogr., 51(4)1636., Bremerhaven, PANGAEA, 1629
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 10
    Publication Date: 2019-07-16
    Repository Name: EPIC Alfred Wegener Institut
    Type: PANGAEA Documentation , notRev
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  • 11
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    PANGAEA
    In:  EPIC3Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Description: In the last 20 years directed shark and ray fishery has increased alarmingly everywhere in the world. For most species though, no data on growth rate, mortality, fecundity and other life history aspects exist as of now and management of the fishery is therefore insufficient. Also there still exist methodological difficulties in the age determination of elasmobranchs fishes, a fact which complicates the investigation of growth parameters. This study tried to identify the best ageing methods and estimate growth parameters for ten skate species of the genus Bathyraja, all occurring in the southwest Atlantic in depths of 50m and more. 720 samples were collected on board of argentine research vessels in between 2003 and 2005. Crystal violet and a new staining method using potassium permanganate, both applied on sagittal sections of vertebral centra, proved to be most effective in enhancing the banding pattern in most of the species. Thorns were also tested and readings were consistent with the ones made on vertebral sections. Growth parameters could be derived for six species and for the other four estimates could be made. Growth rate as well as infinite length varied between species, with those attaining bigger sizes having lower growth rates. No latitudinal differences in growth rate could be detected but a comparison with samples from other studies showed that total lengths were always reported to be higher around the Malvinas Islands.
    Repository Name: EPIC Alfred Wegener Institut
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  • 12
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    Springer
    In:  EPIC3The Andes - Active Subduction Orogeny, Frontiers in Earth Sciences, Springer, pp. 3-27, ISBN: 978-3-540-24329-8
    Publication Date: 2014-04-15
    Description: We quantitatively analyse the spatial pattern of deformation partitioning and of temporal accumulation of deformation in the Central Andes (15–26° S) with the aim of identifying those mechanisms responsible for initiating and controlling Cenozoic plateau evolution in this region. Our results show that the differential velocity between upper plate velocity and oceanic plate slab rollback velocity is crucial for determining the amount and rate of shortening, as well as their lateral variability at the leading edge of the upper plate. This primary control is modulated by factors affecting the strength balance between the upper plate lithosphere and the Nazca/South American Plate interface. These factors particularly include a stage of reduced slab dip (33 to 20 Ma) that accelerated shortening and an earlier phase (45 to 33 Ma) of higher trenchward sediment flux that reduced coupling at the plate interface, resulting in slowed shortening and enhanced slab rollback. Because high sediment flux and transfer of convergence into upper plate shortening constitute a negative feedback, we suggest that interruption of this feedback is critical for sustaining high shortening transfer, as observed for the Andes. Although we show that climate trends have no influence on the evolution of the Central Andes, the position of this region in the global arid belt in a low erosion regime is the key that provides this interruption; it inhibits high sediment flux into the trench despite the formation of relief from ongoing shortening. Along-strike variations in Andean shortening are clearly related to changes of the above factors. The spatial pattern of distribution of deformation in the Central Andes, as well as the synchronization of fault systems and the total magnitude of shortening, was mainly controlled by large-scale, inherited upper plate features that constitute zones of weakness in the upper plate leading edge. In summary, only a very particular combination of parameters appears to be able to trigger plateau-style deformation at a convergent continental margin. The combination of these parameters (in particular, differential trench-upper plate velocity evolution, high plate interface coupling from low trench infill, and the lateral distribution of weak zones in the upper plate leading edge) was highly uncommon during the Phanerozoic. This led to very few plateau-style orogens at convergent margins like the Cenozoic Central Andes in South America or, possibly, the Laramide North American Cordillera.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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  • 13
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: PANGAEA Documentation , notRev
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  • 14
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: PANGAEA Documentation , notRev
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  • 15
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    PANGAEA
    In:  EPIC3IODP - Expedition 302., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 16
    Publication Date: 2022-05-25
    Description: Author Posting. © National Academy of Sciences, 2006. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences 103 (2006): 3675-3680, doi:10.1073/pnas.0600160103.
    Description: We investigated whether the evolution of electric organs and electric signal diversity in two independently evolved lineages of electric fishes was accompanied by convergent changes on the molecular level. We found that a sodium channel gene (Nav1.4a) that is expressed in muscle in nonelectric fishes has lost its expression in muscle and is expressed instead in the evolutionarily novel electric organ in both lineages of electric fishes. This gene appears to be evolving under positive selection in both lineages, facilitated by its restricted expression in the electric organ. This view is reinforced by the lack of evidence for selection on this gene in one electric species in which expression of this gene is retained in muscle. Amino acid replacements occur convergently in domains that influence channel inactivation, a key trait for shaping electric communication signals. Some amino acid replacements occur at or adjacent to sites at which disease-causing mutations have been mapped in human sodium channel genes, emphasizing that these replacements occur in functionally important domains. Selection appears to have acted on the final step in channel inactivation, but complementarily on the inactivation "ball" in one lineage, and its receptor site in the other lineage. Thus, changes in the expression and sequence of the same gene are associated with the independent evolution of signal complexity.
    Description: This work was funded by National Institutes of Health Grant R01 NS025513 (to H.H.Z. and Y.L.) and National Science Foundation Integrative Graduate Education and Research Traineeship Program DGE-0114387 (to D.J.Z. and D.M.H.).
    Keywords: Animal communication ; Electric organ ; Channel inactivation ; Protein evolution ; Positive selection
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 17
    Publication Date: 2022-05-25
    Description: Author Posting. © National Academy of Sciences, 2006. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences 103 (2006): 6448-6453, doi:10.1073/pnas.0600830103.
    Description: Submersible exploration of the Samoan hotspot revealed a new, 300-m-tall, volcanic cone, named Nafanua, in the summit crater of Vailulu'u seamount. Nafanua grew from the 1,000-m-deep crater floor in 〈4 years and could reach the sea surface within decades. Vents fill Vailulu'u crater with a thick suspension of particulates and apparently toxic fluids that mix with seawater entering from the crater breaches. Low-temperature vents form Fe oxide chimneys in many locations and up to 1-m-thick layers of hydrothermal Fe floc on Nafanua. High-temperature (81°C) hydrothermal vents in the northern moat (945-m water depth) produce acidic fluids (pH 2.7) with rising droplets of (probably) liquid CO2. The Nafanua summit vent area is inhabited by a thriving population of eels (Dysommina rugosa) that feed on midwater shrimp probably concentrated by anticyclonic currents at the volcano summit and rim. The moat and crater floor around the new volcano are littered with dead metazoans that apparently died from exposure to hydrothermal emissions. Acid-tolerant polychaetes (Polynoidae) live in this environment, apparently feeding on bacteria from decaying fish carcasses. Vailulu'u is an unpredictable and very active underwater volcano presenting a potential long-term volcanic hazard. Although eels thrive in hydrothermal vents at the summit of Nafanua, venting elsewhere in the crater causes mass mortality. Paradoxically, the same anticyclonic currents that deliver food to the eels may also concentrate a wide variety of nektonic animals in a death trap of toxic hydrothermal fluids.
    Description: This work was supported by the National Oceanic and Atmospheric Administration (NOAA) Oceans Exploration and the Hawaii Undersea Research Laboratory–NOAA Undersea Research Program, the National Science Foundation, the Australian Research Council, and the SERPENT program.
    Repository Name: Woods Hole Open Access Server
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  • 18
    Publication Date: 2022-05-25
    Description: Author Posting. © National Academy of Sciences, 2006. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences 103 (2006): 3846-3851, doi:10.1073/pnas.0600035103.
    Description: Studies of deeply buried, sedimentary microbial communities and associated biogeochemical processes during Ocean Drilling Program Leg 201 showed elevated prokaryotic cell numbers in sediment layers where methane is consumed anaerobically at the expense of sulfate. Here, we show that extractable archaeal rRNA, selecting only for active community members in these ecosystems, is dominated by sequences of uncultivated Archaea affiliated with the Marine Benthic Group B and the Miscellaneous Crenarchaeotal Group, whereas known methanotrophic Archaea are not detectable. Carbon flow reconstructions based on stable isotopic compositions of whole archaeal cells, intact archaeal membrane lipids, and other sedimentary carbon pools indicate that these Archaea assimilate sedimentary organic compounds other than methane even though methanotrophy accounts for a major fraction of carbon cycled in these ecosystems. Oxidation of methane by members of Marine Benthic Group B and the Miscellaneous Crenarchaeotal Group without assimilation of methane–carbon provides a plausible explanation. Maintenance energies of these subsurface communities appear to be orders of magnitude lower than minimum values known from laboratory observations, and ecosystem-level carbon budgets suggest that community turnover times are on the order of 100–2,000 years. Our study provides clues about the metabolic functionality of two cosmopolitan groups of uncultured Archaea.
    Description: This work was supported by Deutsche Forschungsgemeinschaft (to J.S.L., R.A., M.E., and K.-U.H. at Research Center for Ocean Margins and Grant Hi 616/4 to K.U.-H.); National Aeronautics and Space Administration Astrobiology Institute Grants NNA04CC06A (to J.E.B. and C.H.H. at Pennsylvania State University), NCC 2-1275 (to M.A.L., K.G.L., K.B.S., H.F.F., A.T., and K.-U.H. at the University of Rhode Island), and NCC 2-1054 (to M.L.S. and A.T. at the Marine Biological Laboratory); the G. Unger Vetlesen Foundation; U.S. Department of Energy Grant DE-FG02-93ER20117; and NSF Grant MCB03-48492. J.F.B. was supported by NSF Integrative Graduate Education and Research Traineeship Program Grant DGE-9972759 and a Schlanger fellowship from the Joint Oceanographic Institutions (JOI). M.A.L. was supported in part by postcruise support from JOI.
    Keywords: Anaerobic methanotrophy ; Deep biosphere ; FISH–secondary ion MS ; Intact polar lipids ; Stable carbon isotopes
    Repository Name: Woods Hole Open Access Server
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  • 19
    Publication Date: 2022-05-25
    Description: From The Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society Baton Rouge, Louisiana. 2–4 March, 2006.
    Description: © 2006 Nahum et al; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
    Description: EGenBio is a system for manipulation and filtering of large numbers of sequences, integrating curated sequence alignments and phylogenetic trees, managing evolutionary analyses, and visualizing their output. EGenBio is organized into three conceptual divisions, Evolution, Genomics, and Biodiversity. The Genomics division includes tools for selecting pre-aligned sequences from different genes and species, and for modifying and filtering these alignments for further analysis. Species searches are handled through queries that can be modified based on a tree-based navigation system and saved. The Biodiversity division contains tools for analyzing individual sequences or sequence alignments, whereas the Evolution division contains tools involving phylogenetic trees. Alignments are annotated with analytical results and modification history using our PRAED format. A miscellaneous Tools section and Help framework are also available. EGenBio was developed around our comparative genomic research and a prototype database of mtDNA genomes. It utilizes MySQL-relational databases and dynamic page generation, and calls numerous custom programs.
    Description: This work was partly funded by the National Institutes of Health (R22/R33 Innovation and Development grant to David Pollock), the National Science Foundation (CBM2/EPSCOR), and the State of Louisiana (Biological Computation and Visualization Center, Governor's iotechnology Initiative, and startup funds to David Pollock).
    Repository Name: Woods Hole Open Access Server
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  • 20
    Publication Date: 2022-05-25
    Description: Author Posting. © National Academy of Sciences, 2002. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences 99 (2002): 14694-14699, doi:10.1073/pnas.232562899.
    Description: The aryl hydrocarbon receptor (AHR) is a ligand-inducible transcription factor that is best known because it mediates the actions of polycyclic and halogenated aromatic hydrocarbon environmental toxicants such as 3-methylcholanthrene and 2,3,7,8-tetrachlorodibenzo-p-dioxin. We report here the successful identification of an endogenous ligand for this receptor; {approx}20 µg was isolated in pure form from 35 kg of porcine lung. Its structure was deduced as 2-(1'H-indole-3'-carbonyl)-thiazole-4-carboxylic acid methyl ester from extensive physical measurements and quantum mechanical calculations. In a reporter gene assay, this ligand activates the AHR with a potency five times greater than that of {beta}-naphthoflavone, a prototypical synthetic AHR ligand. 2-(1'H-indole-3'-carbonyl)-thiazole-4-carboxylic acid methyl ester competes with 2,3,7,8-[3H]tetrachlorodibenzo-p-dioxin for binding to human, murine, and fish AHRs, thus showing that AHR activation is caused by direct receptor binding, and that recognition of this endogenous ligand is conserved from early vertebrates (fish) to humans.
    Description: This work was supported by the Wisconsin Alumni Research Foundation, the University of Wisconsin Sea Grant Institute, and the National Institutes of Health.
    Repository Name: Woods Hole Open Access Server
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  • 21
    Publication Date: 2022-05-25
    Description: Author Posting. © National Academy of Sciences, 2006. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences 103 (2006): 6252-6257, doi:10.1073/pnas.0509950103.
    Description: 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) and related halogenated aromatic hydrocarbons (HAHs) are highly toxic to most vertebrate animals, but there are dramatic differences in sensitivity among species and strains. Aquatic birds including the common tern (Sterna hirundo) are highly exposed to HAHs in the environment, but are up to 250-fold less sensitive to these compounds than the typical avian model, the domestic chicken (Gallus gallus). The mechanism of HAH toxicity involves altered gene expression subsequent to activation of the aryl hydrocarbon receptor (AHR), a basic helix–loop–helix-PAS transcription factor. AHR polymorphisms underlie mouse strain differences in sensitivity to HAHs and polynuclear aromatic hydrocarbons, but the role of the AHR in species differences in HAH sensitivity is not well understood. Here, we show that although chicken and tern AHRs both exhibit specific binding of [3H]TCDD, the tern AHR has a lower binding affinity and exhibits a reduced ability to support TCDD-dependent transactivation as compared to AHRs from chicken or mouse. We further show through use of chimeric AHR proteins and site-directed mutagenesis that the difference between the chicken and tern AHRs resides in the ligand-binding domain and that two amino acids (Val-325 and Ala-381) are responsible for the reduced activity of the tern AHR. Other avian species with reduced sensitivity to HAHs also possess these residues. These studies provide a molecular understanding of species differences in sensitivity to dioxin-like compounds and suggest an approach to using the AHR as a marker of dioxin susceptibility in wildlife.
    Description: This research was supported by the National Oceanographic and Atmospheric Administration National Sea Grant College Program, Department of Commerce, under Grants NA46RG0470 and NA16RG2273.
    Keywords: Basic helix–loop–helix-PAS ; Comparative toxicology ; Mechanisms ; Risk assessment ; Susceptibility
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  • 22
    Publication Date: 2022-05-25
    Description: Author Posting. © The Authors, 2006. This article is posted here by permission of American Physical Society for personal use, not for redistribution. The definitive version was published in Physical Review Letters 96 (2006): 018305, doi:10.1103/PhysRevLett.96.018305.
    Description: We study the liquid-crystalline phase behavior of a concentrated suspension of helical flagella isolated from Salmonella typhimurium. Flagella are prepared with different polymorphic states, some of which have a pronounced helical character while others assume a rodlike shape. We show that the static phase behavior and dynamics of chiral helices are very different when compared to simpler achiral hard rods. With increasing concentration, helical flagella undergo an entropy-driven first order phase transition to a liquid-crystalline state having a novel chiral symmetry.
    Description: M. S. and R. O. are supported by NIH Grant No. EB002583.
    Keywords: Entropy ; Molecular biophysics ; Liquid crystal phase transformations ; Symmetry ; Chirality
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  • 23
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    PANGAEA
    In:  EPIC3Rice University, Department of Earth Science, Houston, Texas, Bremerhaven, PANGAEA, 376 p.
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 24
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 25
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    PANGAEA
    In:  EPIC3Arctic-Subarctic Ocean Flux Array for European Climate: North., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 26
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    PANGAEA
    In:  EPIC3Leibniz-Institut für Meereswissenschaften an der Universität Kiel., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 27
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 28
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 29
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven, Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven, Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 31
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven, Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 32
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    PANGAEA
    In:  EPIC3ANDRILL contribution 4., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 33
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    PANGAEA
    In:  EPIC3ANDRILL Contribution 5,., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 34
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    PANGAEA
    In:  EPIC3FIELAX Gesellschaft für wissenschaftliche Datenverarbeitung mbH, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 35
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    PANGAEA
    In:  EPIC3School of Earth Sciences, University of Birmingham, Edgbaston, Birmingham B152TT, United Kingdom., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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    In:  EPIC3DEKLIM status report; Institute of Rural Development; Institute of Geography, Landscape Ecology; Institute of Bio-Climatology, University of Göttingen., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    In:  EPIC3Atlas Hydrographic, Bremen, www.atlashydro.com., Bremerhaven, PANGAEA
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    In:  EPIC3Trade Mark DE 30568144.3., Bremerhaven, PANGAEA
    Publication Date: 2015-11-20
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    In:  EPIC3FIELAX Gesellschaft für wissenschaftliche Datenverarbeitung mbH, Bremerhaven., Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven, Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2018-08-10
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    In:  EPIC3Limnol. Oceanogr., 51(3)1293., Bremerhaven, PANGAEA, 1284
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  • 65
    Publication Date: 2022-05-26
    Description: Author Posting. © National Academy of Sciences, 1997. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences 94 (1997): 13743-13748.
    Description: The aryl hydrocarbon receptor (AHR) is a ligand-activated transcription factor through which halogenated aromatic hydrocarbons such as 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) cause altered gene expression and toxicity. The AHR belongs to the basic helix-loop-helix/Per-ARNT-Sim (bHLH-PAS) family of transcriptional regulatory proteins, whose members play key roles in development, circadian rhythmicity, and environmental homeostasis; however, the normal cellular function of the AHR is not yet known. As part of a phylogenetic approach to understanding the function and evolutionary origin of the AHR, we sequenced the PAS homology domain of AHRs from several species of early vertebrates and performed phylogenetic analyses of these AHR amino acid sequences in relation to mammalian AHRs and 24 other members of the PAS family. AHR sequences were identified in a teleost (the killifish Fundulus heteroclitus), two elasmobranch species (the skate Raja erinacea and the dogfish Mustelus canis), and a jawless fish (the lamprey Petromyzon marinus). Two putative AHR genes, designated AHR1 and AHR2, were found both in Fundulus and Mustelus. Phylogenetic analyses indicate that the AHR2 genes in these two species are orthologous, suggesting that an AHR gene duplication occurred early in vertebrate evolution and that multiple AHR genes may be present in other vertebrates. Database searches and phylogenetic analyses identified four putative PAS proteins in the nematode Caenorhabditis elegans, including possible AHR and ARNT homologs. Phylogenetic analysis of the PAS gene family reveals distinct clades containing both invertebrate and vertebrate PAS family members; the latter include paralogous sequences that we propose have arisen by gene duplication early in vertebrate evolution. Overall, our analyses indicate that the AHR is a phylogenetically ancient protein present in all living vertebrate groups (with a possible invertebrate homolog), thus providing an evolutionary perspective to the study of dioxin toxicity and AHR function.
    Description: This work was supported in part by the National Institute of Environmental Health Sciences (Grants R29 ES06272, F32 ES05644, and P42 ES07381), the Donaldson Charitable Trust, and a Christopher Haebler Frantz Fellowship (to M.A.S.).
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    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 68
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    The European physical journal 46 (2006), S. 27-42 
    ISSN: 1434-6052
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Abstract. The production of forward jets has been measured in deep inelastic ep collisions at HERA. The results are presented in terms of single differential cross sections as a function of the Bjorken scaling variable (xBj) and as triple differential cross sections d3σ/dxBjdQ2 $dp_{t,{\rm jet}}^2$ , where Q2 is the four momentum transfer squared and $p_{t,{\rm jet}}^2$ is the squared transverse momentum of the forward jet. Also cross sections for events with a di-jet system in addition to the forward jet are measured as a function of the rapidity separation between the forward jet and the two additional jets. The measurements are compared with next-to-leading order QCD calculations and with the predictions of various QCD-based models.
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    The European physical journal 46 (2006), S. 93-105 
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    Topics: Physics
    Notes: AbstractWe present a study of anomalous electroweak gauge-boson couplings that can be measured in e+e- and γγ collisions at a future linear collider like ILC. We consider the gauge-boson sector of a locally SU(2)×U(1) invariant effective Lagrangian with ten dimension-six operators added to the Lagrangian of the standard model. These operators induce anomalous three-gauge-boson and four-gauge-boson couplings and an anomalous γγH coupling. We calculate the reachable sensitivity for the measurement of the anomalous couplings in γγ→WW. We compare these results with the reachable precision in the reaction e+e-→WW on the one hand and with the bounds that one can obtain from high-precision observables in Z decays on the other hand. We show that one needs both the e+e- and the γγ modes at an ILC to constrain the largest possible number of anomalous couplings and that the Giga-Z mode offers the best sensitivity for certain anomalous couplings.
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  • 70
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    The European physical journal 46 (2006), S. 269-275 
    ISSN: 1434-6052
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    Topics: Physics
    Notes: AbstractIt has been suggested that the Grothendieck–Teichmüller group GT should act on the Duflo isomorphism of su(2), but the corresponding realization of GT turned out to be trivial. We show that a solvable quotient of the motivic Galois group – which is supposed to agree with GT – is closely related to the quantum coadjoint action on $U_q(sl_2)$ for q a root of unity, i.e. in the quantum group case one has a nontrivial realization of a quotient of the motivic Galois group. From a discussion of the algebraic properties of this realization we conclude that in more general cases than $U_q(sl_2)$ it should be related to a quantum version of the motivic Galois group. Finally, we discuss the relation of our construction to quantum field and string theory and explain what we believe to be the ‘physical reason’ behind this relation between the motivic Galois group and the quantum coadjoint action. This might be a starting point for the generalization of our construction to more involved examples.
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    The European physical journal 46 (2006), S. 61-67 
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    Topics: Physics
    Notes: AbstractWe present a new result on the K+→π+π0γ decay measurement using stopped kaons. The best fit to the decay spectrum comprised of 10 k events gives a branching ratio for the direct photon emission of [3.8±0.8 (stat)±0.7 (syst)]×10-6 in the π+ kinetic energy region of 55 to 90 MeV. This result has been obtained with the assumption that there is no component due to interference with the inner bremsstrahlung.
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    The European physical journal 46 (2006), S. 219-224 
    ISSN: 1434-6052
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    Topics: Physics
    Notes: AbstractIn this work the double vector meson production in ultraperipheral heavy ion collisions is investigated within the BFKL approach. The integrated cross sections and event rates for the processes $AA\rightarrow V_1 V_2 AA$ ( $V_i=\rho, \omega, \phi, J/\Psi, \Upsilon$ ) are computed and theoretical estimates for scattering on both light and heavy nuclei are given for energies of RHIC and LHC.
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    The European physical journal 46 (2006), S. 107-111 
    ISSN: 1434-6052
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    Topics: Physics
    Notes: AbstractUltra low momentum neutron catalyzed nuclear reactions in metallic hydride system surfaces are discussed. Weak interaction catalysis initially occurs when neutrons (along with neutrinos) are produced from the protons that capture “heavy” electrons. Surface electron masses are shifted upwards by localized condensed matter electromagnetic fields. Condensed matter quantum electrodynamic processes may also shift the densities of final states, allowing an appreciable production of extremely low momentum neutrons, which are thereby efficiently absorbed by nearby nuclei. No Coulomb barriers exist for the weak interaction neutron production or other resulting catalytic processes.
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  • 74
    ISSN: 1434-6052
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    Topics: Physics
    Notes: AbstractThis paper studies the possibility of direct extraction of the transversity and its accompanying T-odd parton distribution function (PDF) from Drell–Yan (DY) processes with unpolarized pion beam and with both unpolarized and transversely polarized proton targets. At present, such an extraction can be performed with the COMPASS experiment at CERN. The preliminary estimations performed for the COMPASS kinematic region demonstrate that it is quite realistic to extract both transversity and its accompanying T-odd PDF under COMPASS conditions.
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    The European physical journal 46 (2006), S. 1-26 
    ISSN: 1434-6052
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    Topics: Physics
    Notes: AbstractThe exclusive and semi-exclusive branching ratios of the τ lepton hadronic decay modes ( $h^- \nu_\tau$ , $h^- \pi〈Superscript〉0〈/Superscript〉 \nu_\tau$ , $h^-\pi^0 \pi^0\nu_\tau$ , $h^- \geq2 \pi^0 \nu_\tau$ , $h^- \geq3 \pi^0 \nu_\tau$ , $2h^- h^+ \nu_\tau$ , $2h^- h^+\pi^0\nu_\tau$ , $2h^- h^+ \geq2 \pi^0 \nu_\tau$ , $3h^- 2h^+\nu_\tau$ and $3h^- 2h^+ \geq1 \pi^0 \nu_\tau$ ) were measured with data from the DELPHI detector at LEP.
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    The European physical journal 46 (2006), S. 123-134 
    ISSN: 1434-6052
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    Topics: Physics
    Notes: Abstract. Inclusive cross sections for Higgs boson production in proton-proton collisions are calculated in the formalism of unintegrated gluon distributions (UGDFs). Different UGDFs from the literature are used. Although they were constructed in order to describe the HERA deep-inelastic scattering F2 data, they lead to surprisingly different results for Higgs boson production. We present both the two-dimensional invariant cross section as a function of Higgs boson rapidity and transverse momentum, as well as the corresponding projections on rapidity or transverse momentum. We quantify the differences between different UGDs by applying different cuts on interrelations between the transverse momentum of the Higgs and the transverse momenta of both fusing gluons. We focus on the large rapidity region. The interplay of the gluon-gluon fusion and weak-boson fusion in rapidity and transverse momentum is discussed. We find that above pt ∼ 50–100 GeV the weak-gauge boson fusion dominates over gluon-gluon fusion.PACS. 12.38.Bx,12.38.Cy,13.85.Qk,14.70.Hp,14.80.Bn
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    The European physical journal 46 (2006), S. 191-217 
    ISSN: 1434-6052
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    Topics: Physics
    Notes: Abstract. The amplitude of the Dalitz decay π0 → e+e– γ is studied and its model-independent properties are discussed in detail. A calculation of radiative corrections is performed within the framework of two-flavor chiral perturbation theory, enlarged by virtual photons and leptons. The lowest meson dominance approximation, motivated by large NC considerations, is used for the description of the π0 –γ*–γ* transition form factor and for the estimate of the NLO low energy constants involved in the analysis. The two photon reducible contributions are included and discussed. Previous calculations are extended to the whole kinematical range of the soft photon approximation, thus allowing for the possibility to consider various experimental situations and observables.
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  • 78
    ISSN: 1572-9729
    Keywords: bioremediation ; Dehalococcoides ; dechlorination ; microcosm ; tetrachloroethane ; trichloroethene
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract This study investigated the biotransformation pathways of 1,1,2,2-tetrachloroethane (1,1,2,2-TeCA) in the presence of chloroethenes (i.e. tetrachloroethene, PCE; trichloroethene, TCE) in anaerobic microcosms constructed with subsurface soil and groundwater from a contaminated site. When amended with yeast extract, lactate, butyrate, or H2 and acetate, 1,1,2,2-TeCA was initially dechlorinated via both hydrogenolysis to 1,1,2-trichloroethane (1,1,2-TCA) (major pathway) and dichloroelimination to dichloroethenes (DCEs) (minor pathway), with both reactions occurring under sulfidogenic conditions. In the presence of only H2, the hydrogenolysis of 1,1,2,2-TeCA to 1,1,2-TCA apparently required the presence of acetate to occur. Once formed, 1,1,2-TCA was degraded predominantly via dichloroelimination to vinyl chloride (VC). Ultimately, chloroethanes were converted to chloroethenes (mainly VC and DCEs) which persisted in the microcosms for very long periods along with PCE and TCE originally present in the groundwater. Hydrogenolysis of chloroethenes occurred only after highly reducing methanogenic conditions were established. However, substantial conversion to ethene (ETH) was observed only in microcosms amended with yeast extract (200 mg/l), suggesting that groundwater lacked some nutritional factors which were likely provided to dechlorinating microorganisms by this complex organic substrate. Bioaugmentation with an H2-utilizing PCE-dechlorinating Dehalococcoides spp. -containing culture resulted in the conversion of 1,1,2,2-TeCA, PCE and TCE to ETH and VC. No chloroethanes accumulated during degradation suggesting that 1,1,2,2-TeCA was degraded through initial dichloroelimination into DCEs and then typical hydrogenolysis into ETH and VC.
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  • 79
    ISSN: 1572-9729
    Keywords: community fingerprint ; polycyclic aromatic hydrocarbon ; 16S rRNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Microcosm experiments were conduced in which the surface of marine sediment was contaminated with naphthalene and subjected to either of three different bioremediation schemes, i.e., biostimulation (BS) by supplementing with slow-release nitrogen and phosphorus fertilizers, bioaugmentation (BA) by inoculating with Cycloclasticus sp. E2, an aromatics-degrading bacterium identified to play an important role for aromatic-hydrocarbon degradation in marine environments and combination (CB) of BS and BA. These three schemes were found to be similarly effective for removing naphthalene, while naphthalene disappearance in sediment without any treatment (WT) was slower than those in the treated sediments. Shifts in bacterial populations during and after bioremediation were analyzed by denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA gene fragments. It was found that the Cycloclasticus rRNA type occurred as the strongest bands in the course of naphthalene degradation. Clustering analysis of DGGE profiles showed that bacterial populations in the WT, BS and CB sediments differed consistently from those in the uncontaminated control, while the profile for the BA sediment was finally included in the cluster for uncontaminated control sediments after a 150-day treatment. The results suggest that bioaugmentation with ecologically competent pollutant-degrading bacteria is an ecologically promising bioremediation scheme.
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  • 80
    ISSN: 1572-9729
    Keywords: biodegradation ; Burkholderia ; fenitrothion ; mpd gene
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A short rod shaped, gram-negative bacterium strain Burkholderia sp. FDS-1 was isolated from the sludge of the wastewater treating system of an organophosphorus pesticides manufacturer. The isolate was capable of using fenitrothion as the sole carbon source for its growth. FDS-1 first hydrolyzed fenitrothion to 3-methyl-4-nitrophenol, which was further metabolized to nitrite and methylhydroquinone. The addition of other carbon source and omitting phosphorus source had little effect on the hydrolysis of fenitrothion. The gene encoding the organophosphorus hydrolytic enzyme was cloned and sequenced. The sequence was similar to mpd, a gene previously shown to encode a parathion-methyl-hydrolyzing enzyme in Plesiomonas sp. M6. The inoculation of strain FDS-1 (106 cells g−1) to soil treated with 100 mg fenitrothion emulsion kg−1 resulted in a higher degradation rate than in noninoculated soils regardless of the soil sterilized or nonsterilized. These results highlight the potential of this bacterium to be used in the cleanup of contaminated pesticide waste in the environment.
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  • 81
    ISSN: 1572-9729
    Keywords: Delftia acidovorans MC1 ; 2,4-dichlorophenoxyacetic acid (2,4-D) ; 2-(2,4-dichlorophenoxy) propanoic acid (2,4-DP) ; effect of tfdK gene ; simultaneous utilization of 2,4-D and 2,4-DP ; uptake characteristics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Growth of Delftia acidovorans MC1 on 2,4-dichlorophenoxyacetic acid (2,4-D) and on racemic 2-(2,4-dichlorophenoxy)propanoic acid ((RS)-2,4-DP) was studied in the perspective of an extension of the strain’s degradation capacity at alkaline pH. At pH 6.8 the strain grew on 2,4-D at a maximum rate (μmax) of 0.158 h−1. The half-maximum rate-associated substrate concentration (Ks) was 45 μM. At pH 8.5 μmax was only 0.05 h−1 and the substrate affinity was mucher lower than at pH 6.8. The initial attack of 2,4-D was not the limiting step at pH 8.5 as was seen from high dioxygenase activity in cells grown at this pH. High stationary 2,4-D concentrations and the fact that μmax with dichlorprop was around 0.2 h−1 at both pHs rather pointed at limited 2,4-D uptake at pH 8.5. Introduction of tfdK from D. acidovorans P4a by conjugation, coding for a 2,4-D-specific transporter resulted in improved growth on 2,4-D at pH 8.5 with μmax of 0.147 h−1 and Ks of 267 μM. Experiments with labeled substrates showed significantly enhanced 2,4-D uptake by the transconjugant TK62. This is taken as an indication of expression of the tfdK gene and proper function of the transporter. The uncoupler carbonylcyanide m-chlorophenylhydrazone (CCCP) reduced the influx of 2,4-D. At a concentration of 195 μM 2,4-D, the effect amounted to 90% and 50%, respectively, with TK62 and MC1. Cloning of tfdK also improved the utilization of 2,4-D in the presence of (RS)−2,4-DP. Simultaneous and almost complete degradation of both compounds occurred in TK62 up to D = 0.23 h−1 at pH 6.8 and up to D = 0.2 h−1 at pH 8.5. In contrast, MC1 left 2,4-D largely unutilized even at low dilution rates when growing on herbicide mixtures at pH 8.5.
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  • 82
    ISSN: 1572-9729
    Keywords: composting ; crude oil ; olive mill wastewater ; olive oil mills ; olive tree branches ; olive tree leaves ; sludge ; woodchips
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The aim of this paper was to evaluate the use of different bulking agents in different ratios as a means to control, optimise and eventually reduce the duration of the thermophilic period in two-phase olive oil mill sludge (OOMS) composting. The bulking agents used were: (i) olive tree leaves (OTL), (ii) olive tree shredded branches (OTB) and (iii) woodchips (WDC). The selection of these materials was based on their abundance and availability on the island of Crete, the southernmost point of Greece. The ratios studied were: Pile 1, OOMS:OTL in 1:1 v/v; Pile 2, OOMS:WDC in 1:1.5 v/v; Pile 3, OOMS:OTL in 1:2 v/v; Pile 4, OOMS:OTL:OTB in 1:1:1 v/v; and Pile 5, OOMS:OTL:OTB in 1:1:2 v/v. The composting system used was that of windrows with the volume of each pile approximately 20–25 m3. The experiments took place over two consecutive years. A composting turner was used and turnings were performed at one and two week intervals. In each pile a variety of physiochemical parameters were monitored. Temperature remained high in all five trials. Piles 1, 2, 3, 4 and 5 temperatures recorded values of above 50 °C for 106, 158, 160, 175 and 183 days, respectively. Volumes were reduced by approximately 67%, 62%, 63%, 80% and 84%, respectively. Temperature remained high, mainly due to the presence in large amounts of oily substances which during their complete oxidation release important amounts of energy and aid the cometabolism of more stable molecules such as lignin. This process is better described as the slow “burning” of a “fuel” mixture in an “engine” than composting. This approach is based on the extensive similarities of this process to that of crude oil sludge or similar waste composting.
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  • 83
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    The European physical journal 46 (2006), S. 247-254 
    ISSN: 1434-6052
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: AbstractWe propose a modification of standard linear electrodynamics in four dimensions, where effective non-trivial interactions of the electromagnetic field with itself and with matter fields induce Lorentz violating Chern–Simons terms. This yields two consequences: it provides a more realistic and general scenario for the breakdown of Lorentz symmetry in electromagnetism and it may explain the effective behavior of the electromagnetic field in certain planar phenomena (for instance, Hall effect). A number of proposals for non-linear electrodynamics is discussed along the paper. Important physical implications of the breaking of Lorentz symmetry, such as optical birefringence and the possibility of having conductance in the vacuum are commented on.
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  • 84
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    The European physical journal 46 (2006), S. 69-79 
    ISSN: 1434-6052
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: AbstractFirst measurements of $K^\star(892)^\pm$ mesons production properties and their spin alignment in $\nu_\mu$ charged current (CC) and neutral current (NC) interactions are presented. The analysis of the full data sample of the NOMAD experiment is performed in different kinematic regions. For ${K^\star}^+$ and ${K^\star}^-$ mesons produced in $\nu_\mu$ CC interactions and decaying into $K^0 \pi^\pm$ we have found the following yields per event: $(2.6\pm0.2(\text{stat.})\pm0.2(\text{syst.}))\%$ and $(1.6\pm0.1(\text{stat.})\pm0.1(\text{syst.}))\%$ respectively, while for the ${K^\star}^+$ and ${K^\star}^-$ mesons produced in $\nu\text{NC}$ interactions the corresponding yields per event are: $(2.5\pm0.3(\text{stat.})\pm0.3(\text{syst.}))\%$ and $(1.0\pm0.3(\text{stat.})\pm0.2(\text{syst.}))\%$ . The results obtained for the $\rho_{00}$ parameter, $0.40\pm0.06(\text{stat.})\pm0.03(\text{syst.})$ and $0.28\pm0.07(\text{stat.})\pm0.03(\text{syst.})$ for $K^\star(892)^+$ and $K^\star(892)^-$ produced in $\nu_\mu$ CC interactions, are compared to theoretical predictions tuned on LEP measurements in $e^+e^-$ annihilation at the $Z^0$ pole. For $K^\star(892)^+$ mesons produced in $\nu\text{NC}$ interactions the measured $\rho_{00}$ parameter is $0.66\pm0.10(\text{stat.})\pm0.05(\text{syst.})$ .
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  • 85
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    The European physical journal 46 (2006), S. 255-267 
    ISSN: 1434-6052
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Abstract. In gauge theories parallel transporters (PTs) $\mathcal{U}(C)$ along paths C play an important role. Traditionally they are unitary or pseudoorthogonal maps between vector spaces. We propose to abandon unitarity of parallel transporters and with it the a priori assumption of metricity in general relativity. A *-operation on parallel transporters serves as a substitute for it, and this *-operation is proven to be unique on group theoretical grounds. The vierbein and the spin connection appear as distinguishable parts of a single de Sitter gauge field with field strength F. The action takes the form $\frac{3}{16\pi G\Lambda}\int\text{tr}(\boldsymbol{F}\wedge\boldsymbol{F}i\boldsymbol{\gamma}_{5})$ and both the Einstein field equations with arbitrarily small but nonvanishing cosmological constant Λ and the condition of vanishing torsion are obtained from it. The equation of motion for classical massive bodies turns out to be de Sitter covariant.
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  • 86
    ISSN: 1434-6052
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Abstract. High-precision analyses of supersymmetry parameters aim at reconstructing the fundamental supersymmetric theory and its breaking mechanism. A well defined theoretical framework is needed when higher-order corrections are included. We propose such a scheme, Supersymmetry Parameter Analysis SPA, based on a consistent set of conventions and input parameters. A repository for computer programs is provided which connect parameters in different schemes and relate the Lagrangian parameters to physical observables at LHC and high energy e + e- linear collider experiments, i.e., masses, mixings, decay widths and production cross sections for supersymmetric particles. In addition, programs for calculating high-precision low energy observables, the density of cold dark matter (CDM) in the universe as well as the cross sections for CDM search experiments are included. The SPA scheme still requires extended efforts on both the theoretical and experimental side before data can be evaluated in the future at the level of the desired precision. We take here an initial step of testing the SPA scheme by applying the techniques involved to a specific supersymmetry reference point.
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  • 87
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    The European physical journal 46 (2006), S. 81-91 
    ISSN: 1434-6052
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: AbstractWe have reconsidered theoretical upper bounds on the scalar boson masses within the two-Higgs-doublet model (THDM), employing the well-known technical condition of tree-level unitarity. Our treatment provides a modest extension and generalization of some previous results of other authors. We present a rather detailed discussion of the solution of the relevant inequalities and offer some new analytic formulae as well as numerical values for the Higgs mass bounds in question. A comparison is made with the earlier results on the subject that can be found in the literature.
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  • 88
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    The European physical journal 46 (2006), S. 157-178 
    ISSN: 1434-6052
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: AbstractUsing the parallel/orthogonal space method, we calculate the planar two-loop three-point diagram and two rotated reduced planar two-loop three-point diagrams. Together with the crossed topology, these diagrams are the most complicated ones in the two-loop corrections necessary, for instance, for the decay of the Z0 boson. Instead of calculating particular decay processes, we present a new algorithm which allows us to perform arbitrary next-to-next-to-leading order (NNLO) calculations for massive planar two-loop vertex functions in the general mass case. All integration steps up to the last two are performed analytically and will be implemented under xloops as part of the Mainz xloops-GiNaC project. The last two integrations are done numerically using methods like VEGAS and Divonne. Thresholds originating from Landau singularities are found and discussed in detail. In order to demonstrate the numerical stability of our methods we consider particular Feynman integrals which contribute to different physical processes. Our results can be generalized to the case of the crossed topology.
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  • 89
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    The European physical journal 46 (2006), S. 225-233 
    ISSN: 1434-6052
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    Topics: Physics
    Notes: AbstractThe functional integration over the auxiliary bosonic variables of cubic order related with the effective action of the Nambu–Jona–Lasinio model with ’t Hooft term has recently been obtained in the form of a loop expansion. Even numbers of loops contribute to the action, while odd numbers of loops are assigned to the measure. We consider the two-loop corrections and analyse their effect on the low-lying pseudoscalar and scalar mass spectra, quark condensates and weak decay constants. The results are compared to the leading order calculations and other approaches.
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  • 90
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    The European physical journal 46 (2006), S. 151-156 
    ISSN: 1434-6052
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: AbstractWe discuss a new leading-order parameterization of generalized parton distributions of the proton, which is based on the idea of duality. In its minimal version, the parameterization is defined by the usual quark singlet parton distributions and the form factors of the energy-momentum tensor. We demonstrate that our parameterization describes very well the absolute value, the Q2-dependence and the W-dependence of HERA data on the total DVCS cross section and contains no free parameters in the HERA kinematics. The parameterization suits the low-xBj region especially well, which allows us to advocate it as a better alternative to the frequently used double distribution parameterization of the GPDs.
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  • 91
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    The European physical journal 46 (2006), S. 113-122 
    ISSN: 1434-6052
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: AbstractReporting to the Dirac wave-packet prescription where it is formally assumed the fermionic nature of the particles, we shall demonstrate that chiral oscillations implicitly aggregated to the interference between positive and negative frequency components of mass eigenstate wave-packets introduce some small modifications to the standard neutrino flavor conversion formula. Assuming the corresponding spinorial solutions of a ‘modified’ Dirac equation, we are specifically interested in quantifying flavor coupled with chiral oscillations for a fermionic Dirac-type particle (neutrino) non-minimally coupling with an external magnetic field B . The viability of the intermediate wave-packet treatment becomes clear when we assume B orthogonal/parallel to the direction of the propagating particle.
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  • 92
    ISSN: 1434-6052
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Abstract. We analyze the dependence of heavy quark free energies on the baryon chemical potential μb in 2-flavor QCD by performing a 6th order Taylor expansion in the chemical potential which circumvents the sign problem. The bare quark mass at $\hat m / T = 0.4$ corresponds to a pion mass of about 770 MeV and is thus not in the range of physical quark masses but the quark mass dependence is known to be small above Tc. At Nτ = 4 the lattices are coarse, however, we are using improved (p4 staggered) fermions. The Taylor expansion coefficients of color singlet and color averaged free energies are calculated and from this the expansion coefficients for the corresponding screening masses are determined. We find that for small μb the free energies of a static quark-antiquark pair decrease in a medium with a net excess of quarks and that screening is well described by a screening mass which increases with increasing μb. The μb-dependent corrections to the screening masses are well described by perturbation theory for T ≳ 2Tc. In particular, we find for all temperatures above Tc that the expansion coefficients for singlet and color averaged screening masses differ by a factor 2.PACS. 11.15.Ha, 11.10.Wx, 12.38Gc, 12.38.Mh
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  • 93
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    The European physical journal 46 (2006), S. 235-245 
    ISSN: 1434-6052
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    Topics: Physics
    Notes: Abstract. We consider the possibility that photons of noncommutative U(1) gauge theory can make bound states. Using the potential model, developed based on the constituent gluon picture of QCD glue-balls, arguments are presented in favor of the existence of these bound states. The basic ingredient of the potential model is that the self-interacting massless gauge particles may get mass by the inclusion of non-perturbative effects.PACS. 02.40.Gh, 11.10.Nx, 12.20.-m
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  • 94
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    The European physical journal 46 (2006), S. 135-145 
    ISSN: 1434-6052
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    Topics: Physics
    Notes: Abstract. In this paper we derive an evolution equation for the gluon density in soft gluon cascades emitted from any colored source, in the leading logarithmic approximation of perturbative QCD. We show that this equation has the same form as the BFKL equation in the forward case. An explicit expression for the total cascade wavefunction involving an arbitrary number of soft gluons is obtained. Renormalization of the colored source wavefunction turns out to be responsible for the reggeization of the source.
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  • 95
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    Biodegradation 17 (2006), S. 207-217 
    ISSN: 1572-9729
    Keywords: biodegradation ; DGGE ; K2Ni(CN)4 soil bacterial populations
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Metal cyanides are significant contaminants of many soils found at the site of former industrial activity. In this study we isolated bacteria capable of degrading ferric ferrocyanide and K2Ni(CN)4. One of these bacteria a Rhodococcus spp. was subsequently used to bioaugment a minimal medium broth, spiked with K2Ni(CN)4, containing 1 g of either an uncontaminated topsoil or a former coke works site soil. Degradation of the K2Ni(CN)4 was observed in both soils, however, bioaugmentation did not significantly impact the rate or degree of K2Ni(CN)4 removal. Statistical analysis of denaturing gradient gel electrophoresis profiles showed that the topsoil bacterial community had a higher biodiversity, and its structure was not significantly affected by either K2Ni(CN)4 or bioaugmentation. In contrast, profiles from the coke works site indicated significant changes in the bacterial community in response to these additions. Moreover, in both soils although bioaugmentation did not affect rates of biodegradation the Rhodococcus spp. did become established in the communities in broths containing both top and coke works soil. We conclude that bacterial communities from contaminated soils with low biodiversity are much more readily perturbed through interventions such as contamination events or bioaugmentation treatments and discuss the implications of these findings for bioremediation studies.
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  • 96
    ISSN: 1572-9729
    Keywords: acetochlor ; degradation ; isolation ; Pseudomonas oleovorans
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract To date, no pure bacterial cultures that could degrade acetochlor have been described. In this study, one strain of microorganism capable of degrading acetochlor, designated as LCa2, was isolated from acetochlor-contaminated soil. The strain LCa2 is Pseudomonas oleovorans according to the criteria of Bergey’s manual of determinative bacteriology and sequence analysis of the partial 16S rRNA gene. Optimum growth temperature and pH were 35 °C and 8.0, respectively. The strain could degrade 98.03% of acetochlor treated at a concentration of 7.6 mg l−1 after 7 days of incubation and could tolerate 200 mg l−1 of acetochlor. When the acetochlor concentration became higher, the degradation cycle became longer. The acetochlor biodegradation products were identified by GC–MS based on mass spectral data and fragmentation patterns. The main plausible degradative pathways involved dechlorination, hydroxylation, N-dealkylation, C-dealkylation and dehydrogenation.
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  • 97
    ISSN: 1572-9729
    Keywords: bioremediation ; composting ; ecotoxicity ; oil sludge
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The present work attempts to ascertain the efficacy of low cost technology (in our case, composting) as a bioremediation technique for reducing the hydrocarbon content of oil refinery sludge with a large total hydrocarbon content (250–300 g kg−1), in semiarid conditions. The oil sludge was produced in a refinery sited in SE Spain The composting system designed, which involved open air piles turned periodically over a period of 3 months, proved to be inexpensive and reliable. The influence on hydrocarbon biodegradation of adding a bulking agent (wood shavings) and inoculation of the composting piles with pig slurry (a liquid organic fertiliser which adds nutrients and microbial biomass to the pile) was also studied. The most difficult part during the composting process was maintaining a suitable level of humidity in the piles. The most effective treatment was the one in which the bulking agent was added, where the initial hydrocarbon content was reduced by 60% in 3 months, compared with the 32% reduction achieved without the bulking agent. The introduction of the organic fertiliser did not significantly improve the degree of hydrocarbon degradation (56% hydrocarbon degraded). The composting process undoubtedly led to the biodegradation of toxic compounds, as was demonstrated by ecotoxicity tests using luminescent bacteria and tests on plants in Petri dishes.
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  • 98
    ISSN: 1572-9729
    Keywords: activated sludge ; dichlorophenol ; monooxygenation ; nicotinamide adenine dinucleotide ; phenolics ; specific growth rate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The two-tank accelerator/aerator modification of activated sludge significantly increases the biodegradation of hydrocarbons requiring initial monooxygenation reactions, such as phenol and 2,4-dichlorophenol (DCP). The small accelerator tank has a controlled low dissolved oxygen (DO) concentration that can enrich the biomass in NADH + H+. It also has a very high specific growth rate (μacc) that up-regulates the biomass’s content of the monooxygenase enzyme. Here, we develop and test the ACCEL model, which quantifies all key phenomena taking place when the accelerator/aerator system is used to enhance biodegradation of hydrocarbons requiring initial monooxygenations. Monooxygenation kinetics follow a multiplicative relationship in which the organic substrates (phenol or DCP) and DO have separate Monod terms, while the biomass’s content of NADH + H+ has a first-order term. The monooxygenase enzyme has different affinities (K values) for phenol and DCP. The biomass’s NADH + H+ content is based on a proportioning of NAD(H) according to the relative rates of NADH + H+ sources and sinks. Biomass synthesis occurs simultaneously through utilization of acetate, phenol, and DCP, but each has its own true yield. The ACCEL model accurately simulates all trends for one-tank and two-tank experiments in which acetate, phenol, and DCP are biodegraded together. In particular, DCP removal is affected most by DOacc and the retention-time ratio, Θacc/Θtotal. Adding an accelerator tank dramatically increases DCP removal, and the best DCP removal occurs for 0.2 〈 DOacc  〈 0.5 mg/l and 0.08 〈 Θacc/Θtotal 〈 0.2. The rates of phenol and DCP utilization follow the multiplicative relationship with a maximum specific rate coefficient proportional to μacc. Finally, μacc increases rapidly for Θacc/Θtotal 〈 0.25, acetate removal in the accelerator fuels the high μacc, and the biomass’s NADH + H+ content increases very dramatically for DOacc 〈 0.25 mg/l.
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  • 99
    Publication Date: 2006-06-01
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 100
    Publication Date: 2006-04-13
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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