ALBERT

Description: Scattered groups of these ancient fish may all stem from a single remote population. Coelacanths were discovered in the Comoros archipelago to the northwest of Madagascar in 1952. Since then, these rare, ancient fish have been found to the south off Mozambique, Madagascar and South Africa, and to the north off Kenya and Tanzania — but it was unclear whether these are separate populations or even subspecies. Here we show that the genetic variation between individuals from these different locations is unexpectedly low. Combined with earlier results from submersible and oceanographic observations1, 2, our findings indicate that a separate African metapopulation is unlikely to have existed and that locations distant from the Comoros were probably inhabited relatively recently by either dead-end drifters or founders that originated in the Comoros.

Description: An empirical model for the temperature of subsurface water entrained into the ocean mixed layer (Te) is presented and evaluated to improve sea surface temperature anomaly (SSTA) simulations in an intermediate ocean model (IOM) of the tropical Pacific. An inverse modeling approach is adopted to estimate Te from an SSTA equation using observed SST and simulated upper-ocean currents. A relationship between Te and sea surface height (SSH) anomalies is then obtained by utilizing a singular value decomposition (SVD) of their covariance. This empirical scheme is able to better parameterize Te anomalies than other local schemes and quite realistically depicts interannual variability of Te, including a nonlocal phase lag relation of Te variations relative to SSH anomalies over the central equatorial Pacific. An improved Te parameterization naturally leads to better depiction of the subsurface effect on SST variability by the mean upwelling of subsurface temperature anomalies. As a result, SSTA simulations are significantly improved in the equatorial Pacific; a comparison with other schemes indicates that systematic errors of the simulated SSTAs are significantly small—apparently due to the optimized empirical Teparameterization. Cross validation and comparisons with other model simulations are made to illustrate the robustness and effectiveness of the scheme. In particular it is demonstrated that the empirical Te model constructed from one historical period can be successfully used to improve SSTA simulations in another.

Description: Anaerobic methane-oxidizing microbial communities in sediments at cold methane seeps are important factors in controlling methane emission to the ocean and atmosphere. Here, we investigated the distribution and carbon isotopic signature of specific biomarkers derived from anaerobic methanotrophic archaea (ANME groups) and sulphate-reducing bacteria (SRB) responsible for the anaerobic oxidation of methane (AOM) at different cold seep provinces of Hydrate Ridge, Cascadia margin. The special focus was on their relation to in situ cell abundances and methane turnover. In general, maxima in biomarker abundances and minima in carbon isotope signatures correlated with maxima in AOM and sulphate reduction as well as with consortium biomass. We found ANME-2a/DSS aggregates associated with high abundances of sn-2,3-di-O-isoprenoidal glycerol ethers (archaeol, sn-2-hydroxyarchaeol) and specific bacterial fatty acids (C16:1ω5c, cyC17:0ω5,6) as well as with high methane fluxes (Beggiatoa site). The low to medium flux site (Calyptogena field) was dominated by ANME-2c/DSS aggregates and contained less of both compound classes but more of AOM-related glycerol dialkyl glycerol tetraethers (GDGTs). ANME-1 archaea dominated deeper sediment horizons at the Calyptogena field where sn-1,2-di-O-alkyl glycerol ethers (DAGEs), archaeol, methyl-branched fatty acids (ai-C15:0, i-C16:0, ai-C17:0), and diagnostic GDGTs were prevailing. AOM-specific bacterial and archaeal biomarkers in these sediment strata generally revealed very similar δ13C-values of around −100. In ANME-2-dominated sediment sections, archaeal biomarkers were even more 13C-depleted (down to −120), whereas bacterial biomarkers were found to be likewise 13C-depleted as in ANME-1-dominated sediment layers (δ13C: −100). The zero flux site (Acharax field), containing only a few numbers of ANME-2/DSS aggregates, however, provided no specific biomarker pattern. Deeper sediment sections (below 20 cm sediment depth) from Beggiatoa covered areas which included solid layers of methane gas hydrates contained ANME-2/DSS typical biomarkers showing subsurface peaks combined with negative shifts in carbon isotopic compositions. The maxima were detected just above the hydrate layers, indicating that methane stored in the hydrates may be available for the microbial community. The observed variations in biomarker abundances and 13C-depletions are indicative of multiple environmental and physiological factors selecting for different AOM consortia (ANME-2a/DSS, ANME-2c/DSS, ANME-1) along horizontal and vertical gradients of cold seep settings.

Description: Climate models used to produce global warming scenarios exhibit widely diverging responses of the thermohaline circulation (THC). To investigate the mechanisms responsible for this variability, a regional Atlantic Ocean model driven with forcing diagnosed from two coupled greenhouse gas simulations has been employed. One of the coupled models (MPI) shows an almost constant THC, the other (GFDL) shows a declining THC in the twenty-first century. The THC evolution in the regional model corresponds rather closely to that of the respective coupled simulation, that is, it remains constant when driven with the forcing from the MPI model, and declines when driven with the GFDL forcing. These findings indicate that a detailed representation of ocean processes in the region covered by the Atlantic model may not be critical for the simulation of the overall THC changes in a global warming scenario, and specifically that the coupled model’s rather coarse representation of water mass formation processes in the subpolar North Atlantic is unlikely to be the primary cause for the large differences in the THC evolution. Sensitivity experiments have confirmed that a main parameter governing the THC response to global warming is the density of the intermediate waters in the Greenland–Iceland–Norwegian Seas, which in turn influences the density of the North Atlantic Deep Water, whereas changes in the air–sea heat and freshwater fluxes over the subpolar North Atlantic are only of moderate importance, and mainly influence the interannual–decadal variability of THC. Finally, as a consequence of changing surface fluxes, the Labrador Sea convection ceases by about 2030 under both forcings (i.e., even in a situation where the overall THC is stable) indicating that the eventual breakdown of the convection is likely but need not coincide with substantial THC changes.

Description: This study explores the influence of phytoplankton on the tropical Pacific heat budget. A hybrid coupled model for the tropical Pacific that is based on a primitive equation reduced-gravity multilayer ocean model, a dynamic ocean mixed layer, an atmospheric mixed layer, and a statistical atmosphere is used. The statistical atmosphere relates deviations of the sea surface temperature from its mean to wind stress anomalies and allows for the rectification of the annual cycle and the El Niño–Southern Oscillation (ENSO) phenomenon through the positive Bjerknes feedback. Furthermore, a nine-component ecosystem model is coupled to the physical variables of the ocean. The simulated chlorophyll concentrations can feed back onto the ocean heat budget by their optical properties, which modify solar light absorption in the surface layers. It is shown that both the surface layer concentration as well as the vertical profile of chlorophyll have a significant effect on the simulated mean state, the tropical annual cycle, and ENSO. This study supports a previously suggested hypothesis (Timmermann and Jin) that predicts an influence of phytoplankton concentration of the tropical Pacific climate mean state and its variability. The bioclimate feedback diagnosed here works as follows: Maxima in the subsurface chlorophyll concentrations lead to an enhanced subsurface warming due to the absorption of photosynthetically available shortwave radiation. This warming triggers a deepening of the mixed layer in the eastern equatorial Pacific and eventually a reduction of the surface ocean currents (Murtugudde et al.). The weakened south-equatorial current generates an eastern Pacific surface warming, which is strongly enhanced by the Bjerknes feedback. Because of the deepening of the mixed layer, the strength of the simulated annual cycle is also diminished. This in turn leads to an increase in ENSO variability.

Description: The authors present the first quantitative comparison between new velocity datasets and high-resolution models in the North Atlantic subpolar gyre [1/10° Parallel Ocean Program model (POPNA10), Miami Isopycnic Coordinate Ocean Model (MICOM), ° Atlantic model (ATL6), and Family of Linked Atlantic Ocean Model Experiments (FLAME)]. At the surface, the model velocities agree generally well with World Ocean Circulation Experiment (WOCE) drifter data. Two noticeable exceptions are the weakness of the East Greenland coastal current in models and the presence in the surface layers of a strong southwestward East Reykjanes Ridge Current. At depths, the most prominent feature of the circulation is the boundary current following the continental slope. In this narrow flow, it is found that gridded float datasets cannot be used for a quantitative comparison with models. The models have very different patterns of deep convection, and it is suggested that this could be related to the differences in their barotropic transport at Cape Farewell. Models show a large drift in watermass properties with a salinization of the Labrador Sea Water. The authors believe that the main cause is related to horizontal transports of salt because models with different forcing and vertical mixing share the same salinization problem. A remarkable feature of the model solutions is the large westward transport over Reykjanes Ridge [10 Sv (Sv ≡ 106 m3 s−1) or more]

Description: CORONA images have been used for the mapping of periglacial features on the Bykovsky Peninsula and adjacent Khorogor Valley in northeast Siberia. Features, mapped and analysed within a geographical information system, include thermokarst depressions, thermo-erosional valleys, thermo-erosional cirques, thermokarst lakes, thermokarst lagoons and pingos. More than 50% of the area is strongly influenced by thermally-induced subsidence. Thermokarst in the area is probably less active today than in the early-middle Holocene.

Description: Samples from three hot springs (Alla, Seya and Garga) located in the northeastern part of Baikal rift zone (Buryat Republic, Russia) were screened for the presence of thermophilic nitrifying bacteria. Enrichment cultures were obtained solely from the Garga spring characterized by slightly alkaline water (pH 7.9) and an outlet temperature of 75°C. The enrichment cultures of the ammonia- and nitrite oxidizers grew at temperature ranges of 27–55 and 40–60°C, respectively. The temperature optimum was approximately 50°C for both groups and thus they can be designated as moderate thermophiles. Ammonia oxidizers were identified with classical and immunological techniques. Representatives of the genus Nitrosomonas and Nitrosospira-like bacteria with characteristic vibroid morphology were detected. The latter were characterized by an enlarged periplasmic space, which has not been previously observed in ammonia oxidizers. Electron microscopy, denaturing gradient gel electrophoresis analyses and partial 16S rRNA gene sequencing provided evidence that the nitrite oxidizers were members of the genus Nitrospira.

Description: For the understanding and assessment of recent and future carbon dynamics of arctic permafrost soils the processes of CH4 production and oxidation, the community structure and the quality of dissolved organic matter (DOM) were studied in two soils of a polygonal tundra. Activities of methanogens and methanotrophs differed significantly in their rates and distribution patterns among the two investigated profiles. Community structure analysis showed similarities between both soils for ester-linked phospholipid fatty acids (PLFAs) and differences in the fraction of unsaponifiable PLFAs and phospholipid ether lipids. Furthermore, a shift of the overall composition of the microbiota with depth at both sites was indicated by an increasing portion of iso- and anteiso-branched fatty acids related to the amount of straight-chain fatty acids. Although permafrost soils represent a large carbon pool, it was shown that the reduced quality of organic matter leads to a substrate limitation of the microbial metabolism. It can be concluded from our and previous findings first that microbial communities in the active layer of an Arctic polygon tundra are composed by members of all three domains of life, with a total biomass comparable to temperate soil ecosystems, and second that these microorganisms are well adapted to the extreme temperature gradient of their environment.

Description: Induced breeding of climbing perch, Anabas testudineus was conducted by synthetic hormone Wova-FH in the intensity level of 0.1, 0.2 and 0.3 mL kg−1 of body weight respectively. The brooders were injected one time and left to spawn in the spawning hapa in the sex ratio between male and female as 2:1. It was found that at all the intensity level hormone Wova-FH could enhance the fishes to breed and lay eggs whereas no breeding was observed in control set. The spawning time, quantity of the brooder spawn, fertilization rate, hatching rate and survival rate were quantified in each set of experiment. The egg output/female was significantly higher in 0.3 mL in comparison with 0.1 and 0.2 mL kg−1 of body weight. The statistical analysis showed significant (P≤0.05) effect between hormone dose on fertilization rate, egg output and hatching rate. The present experiment suggests that Wova-FH at the dose of 0.3 mL kg−1 body weight of fish is more effective which might be considered for raising captive population.

Description: Detailed studies of the behavior and location of free-ranging animals can be considerably enhanced with the use of animal-mounted devices. A few devices, such as data loggers, have to be recovered to access the data, whereas satellite tags or radiocollars often are left on the animal after the study period. Recovery of devices, which usually necessitates animal recapture, can be problematic, especially in larger species. This paper presents a new, non-electronic release mechanism, requiring no power source on the animal, that was successfully tested on South American sea lions (Otaria flavescens) in Argentina during the 2003–2004 austral summer. The system has potential for many larger terrestrial or aquatic animals.

Description: The great cormorant Phalacrocorax carbo is thought to have a wettable plumage, providing low body insulation during foraging. Great cormorants should thus be constrained by water temperatures, and show high energy requirements. Surprisingly, this species has one of the widest breeding distributions of all diving birds, and does not require more food than these other species. We explored this apparent paradox by comparing the insulative properties of body plumage in four subspecies of great cormorants ranging from tropical to polar regions. We found that all subspecies retained an insulating air layer in their plumage, which was, however, much thinner than for other species of diving birds. Detailed examination of the plumage showed that each cormorant body feather has a loose, instantaneously wet, outer section and a highly waterproof central portion. This indicates that the plumage of great cormorants is only partly wettable, and that birds maintain a thin layer of air in their plumage. Our findings suggest an unusual morphological-functional adaptation to diving which balances the antagonist constraints of thermoregulation and buoyancy.

Description: In the context of gradual Cenozoic cooling, the timing of the onset of significant Northern Hemisphere glaciation 2.7 million years ago is consistent with Milankovitch's orbital theory, which posited that ice sheets grow when polar summertime insolation and temperature are low. However, the role of moisture supply in the initiation of large Northern Hemisphere ice sheets has remained unclear. The subarctic Pacific Ocean represents a significant source of water vapour to boreal North America, but it has been largely overlooked in efforts to explain Northern Hemisphere glaciation. Here we present alkenone unsaturation ratios and diatom oxygen isotope ratios from a sediment core in the western subarctic Pacific Ocean, indicating that 2.7 million years ago late-summer sea surface temperatures in this ocean region rose in response to an increase in stratification. At the same time, winter sea surface temperatures cooled, winter floating ice became more abundant and global climate descended into glacial conditions. We suggest that the observed summer warming extended into the autumn, providing water vapour to northern North America, where it precipitated and accumulated as snow, and thus allowed the initiation of Northern Hemisphere glaciation.

Description: The dependence of the air–sea interactions over the North Atlantic on the ocean dynamics is explored by analyzing multicentury integrations with two different coupled ocean–atmosphere models. One is a coupled general circulation model (CGCM), in which both the atmospheric and the oceanic components are represented by general circulation models (GCMs). The second coupled model employs the same atmospheric GCM, but the oceanic GCM is replaced by a fixed-depth mixed layer model, so that variations of the ocean dynamics are excluded. The coupled model including active ocean dynamics simulates strong multidecadal variability in the sea surface temperature (SST) of the North Atlantic, with a monopolar spatial structure. In contrast, the coupled model that employs an oceanic mixed layer model and thus does not carry active ocean dynamics simulates a tripolar SST anomaly pattern at decadal time scales. The tripolar SST anomaly pattern is characterized by strong horizontal gradients and is by definition the result of the action of surface heat flux anomalies on the oceanic mixed layer. The differences in the spatial structures of the dominant decadal SST anomaly patterns yield rather different atmospheric responses. While the response to the monopolar SST anomaly pattern is shallow and thermal, the response to the tripolar SST anomaly pattern involves changes in the transient eddy statistics. The latter can be explained by the strong horizontal SST gradients that affect the surface baroclinicity, which in turn affects the growth rate of the transient eddies. The differences in the atmospheric response characteristics yield completely different response patterns. In the coupled run with active ocean dynamics, the sea level pressure (SLP) anomalies exhibit a rather homogeneous pattern that resembles somewhat the East Atlantic Pattern (EAP), while a dipolar (North Atlantic Oscillation) NAO-like SLP anomaly pattern is simulated in the coupled run without active ocean dynamics.

Description: The interaction of clouds with solar and terrestrial radiation is one of the most important topics of climate research. In recent years it has been recognized that only a full three-dimensional (3D) treatment of this interaction can provide answers to many climate and remote sensing problems, leading to the worldwide development of numerous 3D radiative transfer (RT) codes. The international Intercomparison of 3D Radiation Codes (I3RC), described in this paper, sprung from the natural need to compare the performance of these 3D RT codes used in a variety of current scientific work in the atmospheric sciences. I3RC supports intercomparison and development of both exact and approximate 3D methods in its effort to 1) understand and document the errors/limits of 3D algorithms and their sources; 2) provide “baseline” cases for future code development for 3D radiation; 3) promote sharing and production of 3D radiative tools; 4) derive guidelines for 3D radiative tool selection; and 5) improve atmospheric science education in 3D RT. Results from the two completed phases of I3RC have been presented in two workshops and are expected to guide improvements in both remote sensing and radiative energy budget calculations in cloudy atmospheres.

Description: 1. Tracer experiments with two diatoms labelled with 13C (Nitzschia palea) and 15N (Fragilaria crotonensis), were conducted to investigate feeding selectivity and interspecific competition between the grazers Asellus aquaticus (Isopoda, Crustacea) and Potamopyrgus antipodarum (Hydrobiidae, Gastropoda). Conventional methods, such as cell counts and estimated biovolume, were used first to detect feeding preferences within the different grazer treatments. 2. The results revealed a significant decline in algal biovolume in all grazer treatments and no indications of active selectivity were observed. In contrast to conventional methods, measurements based on isotope signatures showed strong differences in tracer uptake, thus indicating different degrees of assimilation and digestion by the two grazers. 3. The selectivity index Q, which provides information on the uptake ratio of 13C to 15N, showed a significant time effect for both grazer species and a significant difference between single- and mixed-grazer treatments for P. antipodarum. Thus, this technique enabled the direct quantification of the uptake by grazers and, therefore, served as an ideal tool for the detection of passive selectivity. 4. Our results indicate a shift in feeding preferences related to between-species competition and a potential divergence of trophic niches when species coexist.

Description: The monthly variation in reproductive cycle, condition factor (fatness), gonad index (GI), ovarian egg diameter and biochemical composition [RNA, DNA content and their ratio RNA/DNA (R/D)] were compared to determine the spawning season of the purplish Washington clam, Saxidomus purpuratus, collected from the west sea of Taean, Korea. All these factors were correlated to the spawning season from May to October. Monthly variation and concentration of the R/D ratio especially represented indicative information about the processes of gonad development and spawning patterns. The increases in R/D ratio in the ovaries corresponded with increases in ovarian egg diameters and the GI during the spawning season. The peak of R/D and RNA content in females was a good indicator of sexual maturation and the DNA content in males. During winter between November and January, the value of fatness, GI, egg size, RNA and DNA content were lower than in other seasons, indicating depletion of energy reserves and lower metabolic demands because of colder temperatures.

Description: Changes of the North Atlantic thermohaline circulation (THC) excite wave patterns that readjust the thermocline globally. This paper examines the impact of a freshwater-induced THC shutdown on the depth of the Pacific thermocline and its subsequent modification of the El Niño–Southern Oscillation (ENSO) variability using an intermediate-complexity global coupled atmosphere–ocean–sea ice model and an intermediate ENSO model, respectively. It is shown by performing a numerical eigenanalysis and transient simulations that a THC shutdown in the North Atlantic goes along with reduced ENSO variability because of a deepening of the zonal mean tropical Pacific thermocline. A transient simulation also exhibits abrupt changes of ENSO behavior, depending on the rate of THC change. The global oceanic wave adjustment mechanism is shown to play a key role also on multidecadal time scales. Simulated multidecadal global sea surface temperature (SST) patterns show a large degree of similarity with previous climate reconstructions, suggesting that the observed pan-oceanic variability on these time scales is brought about by oceanic waves and by atmospheric teleconnections.

Description: The interannual heat content variability in the tropical south Indian Ocean (SIO) and its relationship with El Niño–Southern Oscillation (ENSO) is studied. The baroclinic ocean response to stochastic wind stress predicted by a simple analytical model is compared with two integrations of the ECHO-G coupled general circulation model. In one integration, ocean–atmosphere interactions are suppressed in the tropical Pacific Ocean, so that this integration does not simulate ENSO. In the other integration, interactions are allowed everywhere and ENSO is simulated. The results show that basinwide variability in the SIO heat content can be produced by two mechanisms: 1) oscillatory forcing by ENSO-related wind stress and 2) temporally stochastic and spatially coherent wind stress forcing. Previous studies have shown that transmission of energy from the tropical Pacific to the southern Indian Ocean occurs through coastal Kelvin waves along the western coast of Australia. The results in this paper confirm the occurrence of such transmission. In the ECHO-G simulations, this transmission occurs both at the annual time scale and at interannual time scales. Generation of offshore Rossby waves by these coastal Kelvin waves at interannual time scales—and, in particular, at the ENSO time scale—was found.

Description: A coupled global atmosphere–ocean model of intermediate complexity is used to study the influence of glacial boundary conditions on the atmospheric circulation during the Last Glacial Maximum in a systematical manner. A web of atmospheric interactions is disentangled, which involves changes in the meridional temperature gradient and an associated modulation of the atmospheric baroclinicity. This in turn drives anomalous transient eddy momentum fluxes that feed back onto the zonal mean circulation. Moreover, the modified transient activity (weakened in the North Pacific and strengthened in the North Atlantic) leads to a meridional reorganization of the atmospheric heat transport, thereby feeding back onto the meridional temperature structure. Furthermore, positive barotropic conversion and baroclinic production rates over the Laurentide ice sheets and the far eastern North Pacific have the tendency to decelerate the westerlies, thereby feeding back to the stationary wave changes triggered by orographic forcing.

Description: Two state-of-the-art profiling floats were equipped with novel optode-based oceanographic oxygen sensors. Both floats were simultaneously deployed in the central Labrador Sea gyre on 7 September 2003. They drift at a depth of 800 db and perform weekly profiles of temperature, salinity, and oxygen in the upper 2000 m of the water column. The initial results from the first 6 months of operation are presented. Data are compared with a small hydrographic oxygen survey of the deployment site. They are further examined for measurement quality, including precision, accuracy, and drift aspects. The first 28 profiles obtained are of high quality and show no detectable sensor drift. A method of long-term drift control is described and a few suggestions for the operation protocol are provided.

Description: The dominant pattern of atmospheric variability in the North Atlantic sector is the North Atlantic Oscillation (NAO). Since the 1970s the NAO has been well characterized by a trend toward its positive phase. Recent atmospheric general circulation model studies have linked this trend to a progressive warming of the Indian Ocean. Unfortunately, a clear mechanism responsible for the change of the NAO could not be given. This study provides further details of the NAO response to Indian Ocean sea surface temperature (SST) anomalies. This is done by conducting experiments with a coupled ocean–atmosphere general circulation model (OAGCM). The authors develop a hypothesis of how the Indian Ocean impacts the NAO.

Description: The Coupled Model Intercomparison Project (CMIP) involves study and intercomparison of multimodel simulations of present and future climate. The simulations of the future use idealized forcing in which CO, increase is compounded 1% yr(-1) until it doubles (near year 70) with global coupled models that contain, typically, components representing atmosphere, ocean, sea ice, and land surface. Results from CMIP diagnostic sub-projects were presented at the Second CMIP Workshop held at the Max Planck Institute for Meteorology in Hamburg, Germany, in September 2003. Significant progress in diagnosing and understanding results from global coupled models has been made since the time of the First CMIP Workshop in Melbourne, Australia, in 1998. For example, the issue of flux adjustment is slowly fading as more and more models obtain stable multicentury surface climates without them. El Nino variability, usually about half the observed amplitude in the previous generation of coupled models, is now more accurately simulated in the present generation of global coupled models, though there are still biases in simulating the patterns of maximum variability. Typical resolutions of atmospheric component models contained in coupled models are now usually around 2.5degrees latitude-longitude, with the ocean components often having about twice the atmospheric model resolution, with even higher resolution in the equatorial Tropics. Some new-generation coupled models have atmospheric resolutions of around 1.5degrees latitude - longitude. Modeling groups now routinely run the CMIP control and 1% CO2 simulations in addition to twentieth- and twenty-first-century climate simulations with a variety of forcings e.g., volcanoes, solar variability, anthropogenic sulfate aerosols, ozone, and greenhouse gases, with the anthropogenic forcings for future climate as well. However, persistent systematic errors noted in previous generations of global coupled models are still present in the current generation (e.g., overextensive equatorial Pacific cold tongue, double ITCZ). This points to the next challenge for the global coupled climate modeling community. Planning and commencement of the Intergovernmental Panel on Climate Change Fourth Assessment Report (AR4) has prompted rapid coupled model development, which is leading to an expanded CMIP-like activity to collect and analyze results for the control, 1% CO2, and twentieth-, twenty-first, and twenty-second-century simulations performed for the AR4. The international climate community is encouraged to become involved in this analysis effort.

Description: The solar radiative properties of cirrus clouds depend on ice particle shape, size, and orientation, as well as on the spatial cloud structure. Radiation schemes in atmospheric circulation models rely on estimates of cloud optical thickness only. In the present work, a Monte Carlo radiative transfer code is applied to various cirrus cloud scenarios to obtain the radiative response of uncertainties in the above-mentioned microphysical and spatial cloud properties (except orientation). First, plane-parallel homogeneous (0D) clouds with different crystal shapes (hexagonal columns, irregular polycrystals) and 114 different size distributions have been considered. The resulting variabilities in the solar radiative fluxes are in the order of a few percent for the reflected and about 1% for the diffusely transmitted fluxes. Largest variabilities in the order of 10% to 30% are found for the solar broadband absorptance. However, these variabilities are smaller than the flux differences caused by the choice of ice particle geometries. The influence of cloud inhomogeneities on the radiative fluxes has been examined with the help of time series of Raman lidar extinction coefficient profiles as input for the radiative transfer calculations. Significant differences between results for inhomogeneous and plane-parallel clouds were found. These differences are in the same order of magnitude as those arising from using extremely different crystal shapes for the radiative transfer calculations. From this sensitivity study, the ranking of cirrus cloud properties according to their importance in solar broadband radiative transfer is optical thickness, ice crystal shape, ice particle size, and spatial structure.

Description: The Labrador Sea is one of the few regions of the World Ocean where deep convection takes place. Several moorings across the Labrador continental slope just north of Hamilton Bank show that convection does take place within the Labrador Current. Mixing above the lower Labrador slope is facilitated by the onshore along-isopycnal intrusions of low-potential-vorticity eddies that weaken the stratification, combined with baroclinic instability that sustains slanted mixing while restratifying the water column through horizontal fluxes. Above the shelf break, the Irminger seawater core is displaced onshore while the stratification weakens with the increase in isopycnal slope. The change in stratification is partially due to the onshore shift of the “classical” Labrador Current, baroclinic instability, and possibly slantwise convection.

Description: Repeated shipboard observation sections across the boundary flow off northeastern Brazil as well as acoustic Doppler current profiler (ADCP) and current-meter records from a moored boundary array deployed during 2000–04 near 11°S are analyzed here for both the northward warm water flow by the North Brazil Undercurrent (NBUC) above approximately 1100 m and the southward flow of North Atlantic Deep Water (NADW) underneath. At 5°S, the mean from nine sections yields an NBUC transport of 26.5 ± 3.7 Sv (Sv ≡ 106 m3 s−1) along the boundary; at 11°S the mean NBUC transport from five sections is 25.4 ± 7.4 Sv, confirming that the NBUC is already well developed at 11°S. At both latitudes a persistent offshore southward recirculation between 200- and 1100-m depth reduces the net northward warm water flow through the 5°S section (west of 31.5°W) to 22.1 ± 5.3 Sv and through the 11°S section to 21.7 ± 4.1 Sv (west of 32.0°W). The 4-yr-long NBUC transport time series from 11°S yields a seasonal cycle of 2.5 Sv amplitude with its northward maximum in July. Interannual NBUC transport variations are small, varying only by ±1.2 Sv during the four years, with no detectable trend. The southward flow of NADW within the deep western boundary current at 5°S is 25.5 ± 8.3 Sv with an offshore northward recirculation, yielding a nine-section mean of 20.3 ± 10.1 Sv west of 31.5°W. For Antarctic Bottom Water, a net northward flow of 4.4 ± 3.0 Sv is determined at 5°S. For the 11°S section, the moored array data show a pronounced energy maximum at 60–70-day period in the NADW depth range, which was identified in related work as deep eddies translating southward along the boundary. Based on a kinematic eddy model fit to the first half of the moored time series, the mean NADW transfer by the deep eddies at 11°S was estimated to be about 17 Sv. Given the large interannual variability of the deep near-boundary transport time series, which ranged from 14 to 24 Sv, the 11°S mean was considered to be not distinguishable from the mean at 5°S

Description: A bottom simulating reflector (BSR), which marks the base of the gas hydrate stability zone, has been detected for the first time in seismic data of the Black Sea. The survey area is in the northwestern Black Sea at 44°–45°N and 31.5°–32.5°E. In this paper, seismic wide-angle ocean bottom hydrophone (OBH) and ocean bottom seismometer (OBS) data are investigated with the goal to quantify the gas hydrate and free gas saturation in the sediment. An image of the subsurface is computed from wide-angle data by using Kirchhoff depth migration. The image shows the BSR at 205–270 m depth below the seafloor and six to eight discrete layer boundaries between the seafloor and the BSR. The top of the hydrate layer and the bottom of the gas layer cannot be identified by seismic reflection signals. An analysis of traveltimes and reflection amplitudes leads to 1-D P-wave velocity–depth and density–depth models. An average S-wave velocity of 160 m s−1 between the seafloor and the BSR is determined from the traveltime of the P to S converted wave. The normal incidence PP reflection coefficient at the BSR is −0.11, where the P-wave velocity decreases from 1840 to 1475 m s−1. Velocities and density are used to compute the porosity and the system bulk modulus as a function of depth. The Gassmann equation for porous media is used to derive explicit formulae for the gas hydrate and free gas saturation, which depend on porosity and on the bulk moduli of the dry and saturated sediment. A gas hydrate saturation–depth profile is obtained, which shows that there is 38 ± 10 per cent hydrate in the pore space at the BSR depth, where the porosity is 57 per cent (OBS 24). This value is derived for the case that the gas hydrate does not cement the sediment grains, a model that is supported by the low S-wave velocities. There is 0.9 or 0.1 per cent free gas in the sediment below the BSR, depending on the model for the gas distribution in the sediment. The free gas layer may be more than 100 m thick as a result of a zone of enhanced reflectivity, which can be identified in the subsurface image.

Description: The influence of fluctuating light on diversity and species number of a natural phytoplankton assemblage competing for nutrients was investigated for 48 days under semicontinuous culture conditions. Light conditions were either changed periodically from high (65 μmol photons·m−2·s−1) to low intensity (15 μmol photons·m−2·s−1) at intervals of 1, 3, 6, and 12 days or fixed at constant light conditions of intermediate intensity (40 μmol photons·m−2·s−1). Fluctuating light at intervals of 1–12 days significantly affected phytoplankton diversity. The development of phytoplankton communities differed in treatments with different light regimes. In treatments with long light intervals, species abundance oscillated with the light phases. Differences in the temporal development of phytoplankton communities resulted in hump‐shaped relations between the interval length of the light phases and both species number and diversity index and can be explained by the intermediate disturbance hypothesis. Fluctuating light tends to sustain phytoplankton diversity under nutrient limitation if the light regime changes in the order of several days. This indicates that temporal changes in weather regime are important in preventing competitive exclusion of phytoplankton species in nature.

Description: This paper presents a three‐dimensional (3D) seismic analysis of sediment remobilization and fluid migration in a 2000‐km2 area above the Gjallar Ridge located in the Vøring Basin, offshore Norway. Three distinct types of mounded structures have been identified as resulting from focused fluid/gas migration and associated mud remobilization and intrusion. Type A structures are gently mounded, and we infer that these structures formed because of in situ remobilization of Middle Eocene to Lower–Middle Oligocene fine‐grained sediments in response to fluid and minor sediment injection via deep‐seated normal faults. Type B structures comprise relatively steep‐sided mounds and are restricted to the pre‐Miocene interval. They are often located above narrow zones of discontinuous low‐amplitude reflections resembling gas chimneys. Some of the Type B structures are associated with stacked amplitude anomalies and possible mud volcanoes at the base Pleistocene indicating their long‐term significance as vertical fluid conduits. Type C structures comprise discrete mound features that seem to jack up the Top Palaeocene (Top Brygge) horizon. These are similar to hydrothermal mounds found elsewhere on the Norwegian Margin and associated with igneous sill intrusion during North Atlantic breakup. This study highlights the utility of 3D seismic data for mapping of fluid and sediment mobilization through time over large basinal areas.

Description: Herbivory is particularly intense in tropical benthic communities, suggesting preference of constitutive, rather than inducible, anti-herbivory defense. The objective of the study was to examine whether anti-herbivore defenses in the red alga Hypnea pannosa J. Agardh and the brown algae Sargassum asperifolium Hering and G. Martens ex J. Agardh and Cystoseira myrica (S.G. Gmelin) C. Agardh could be induced and subsequently reduced in response to grazing by the amphipod Cymadusa filosa Savigny. During a 14-day treatment phase, algae were exposed to amphipod grazing or were left ungrazed (control). Subsequently, one subset of algae was used in feeding assays, whereas another was cultivated for additional 14 days without consumers (recovery phase). At the end of each phase, bioassays were conducted to detect defensive traits in terms of differences in consumption rates of grazed and control pieces of live algae and agar-based food containing nonpolar algal extracts. Consumption of grazed live S. asperifolium and H. pannosa specimens was lower than of control algae. Furthermore, nonpolar extracts of grazed S. asperifolium and C. myrica were less preferred than those from control algae. Defensive responses were exclusively detected after the treatment phase, although strong preference of ungrazed H. pannosa and C. myrica over grazed conspecifics continued throughout the recovery phase. These findings suggest that phenotypic plasticity in anti-herbivory defense of marine macroalgae 1) might be more common than previously shown, 2) could be switched on and off within 2 weeks, and 3) can be found in nonpolar algal extracts.

Description: River discharge of Ob and Yenisei to the Kara Sea is highly variable on seasonal and interannual time scales. River water dominates the shallow bottom water near the river mouths, making it warmer and less saline but seasonally and interannually more changeable than bottom water on the deeper shelf. This hydrographic pattern shows up in measurements and modelling, and in stable isotope records (δ18 O, δ13 C) along the growth axis of bivalve shells and in multiple analyses of single benthic foraminiferal shells. Average isotope ratios increase, but sample-internal variability decreases with water depth and distance from river mouths. However, isotope records of bivalves and foraminifera of a sediment core from a former submarine channel of Yenisei River reveal a different pattern. The retreat of the river mouth from this site due to early Holocene sea level rise led to increasing average isotope values up core, but not to the expected decrease of the in-sample isotope variability. Southward advection of cold saline water along the palaeo-river channel probably obscured the hydrographic variability during the early Holocene. Later, when sediment filled the channel, the hydrographic variability at the core location remained low, because the shallowing proceeded synchronously with the retreat of the river mouth.

Description: A total of 58 extracts of different polarity were prepared from various organs of 16 species of Turkish plants and screened for their antitrypanosomal, antileishmanial and antiplasmodial activities. No significant activity was observed against Trypanosoma cruzi, whereas many extracts showed appreciable trypanocidal potential against T. brucei rhodesiense, with the CHCl3-soluble portion of Phlomis kurdica being the most active (IC50 2.7 µg[sol ]mL). Almost all extracts, particularly the CHCl3 phases, exhibited growth inhibition activity against Leishmania donovani amastigotes. The CHCl3-solubles of Putoria calabrica roots (IC50 1.9 µg[sol ]mL), Wendlandia ligustroides leaves (IC50 2.1 µg[sol ]mL) and Rhododendronluteum leaves (IC50 2.3 µg[sol ]mL) displayed the highest leishmanicidal potential. The majority of the extracts also possessed antiplasmodial activity against the multi-drug resistant K1 Plasmodium falciparum strain. The most potent antiplasmodial activity was observed with the CHCl3 extracts of Phlomis kurdica (IC50 1.5 µg[sol ]mL), P. leucophracta (IC50 1.6 µg[sol ]mL), Scrophularia cryptophila (IC50 1.8 µg[sol ]mL), Morina persica (IC50 1.9 µg[sol ]mL) and the aqueous root extract of Asperula nitida subsp. subcapitellata (IC50 1.6 µg[sol ]mL). Twenty-one extracts with significant antimalarial activity (IC50 〈 5 µg[sol ]mL) were also tested for their ability to inhibit the purified enoyl-ACP reductase (FabI), a crucial enzyme in the fatty acid biosynthesis of P. falciparum. The CHCl3 extract of Rhododendronungernii leaves (IC50 10 µg[sol ]mL) and the H2O-soluble portion of Rhododendronsmirnovii leaves (IC50 0.4 µg[sol ]mL) strongly inhibited the FabI enzyme. The preliminary data indicate that some (poly)phenolic compounds are responsible for the FabI inhibition potential of these extracts. The presented work reports for the first time the antiprotozoal activity of nine different genera as well as a target specific antimalarial screening for the identification of P. falciparum FabI inhibitors from medicinal plant extracts.

Description: Sexual mimicry among animals is widespread, but does it impart a fertilization advantage in the widely accepted ‘sneak–guard’ model of sperm competition? Here we describe field results in which a dramatic facultative switch in sexual phenotype by sneaker-male cuttlefish leads to immediate fertilization success, even in the presence of the consort male. These results are surprising, given the high rate at which females reject copulation attempts by males, the strong mate-guarding behaviour of consort males, and the high level of sperm competition in this complex mating system

Description: Loligo vulgaris is a commercially important squid throughout the Mediterranean region and is a candidate species in biomedical and aquaculture research. Some loligo species (L. opalescens, L. forbesi, Sepiteuthis lessoniana) have now been cultured through some successive generations in closed, recirculating seawater systems. The effects of salinity on hatching European Squid (L. vulgaris Lamarck, 1798) eggs were investigated during November 2004. The egg capsules were incubated directly in salinity of 32, 34, 36, 38, 40, 42 and 37 g L−1 (control group) at 19.8°C (SD 1.2°C), and a photoperiodicity of 12 h light:12 h dark for 16–23 days before hatching. In all treatments, the eggs were developed and hatched normally after 16–22 days at 32 g L−1, 17–22 days at 34, 18–21 days at 42 g L−1, 18–22 days at 36 and 40 g L−1, 19–22 days at 37 g L−1 and 19–23 h at 38 g L−1. In the experiments, the highest hatching rate and hatching success (HS) of the eggs were obtained at 38 g L−1 (hatching rate: 100% (SD 0%) and HS: 96.7% (SD 3.5%)) and the lowest hatching rate at 42 g L−1 (hatching rate: 3% (SD 6%) and HS: 0%). Dorsal mantle lengths (DML) of new hatchlings ranged from 2.08 to 2.80 mm. The present study showed that salinity affects the hatching rate and HS of eggs and first hatching time and DML of paralarvae in L. vulgaris. The squid eggs at stage 11 (I) can tolerate 5 g L−1 reduction and 3 g L−1 increase in salinity.

Description: The Galápagos volcanic province (GVP) includes several aseismic ridges resulting from the interaction between the Galápagos hotspot (GHS) and the Cocos–Nazca spreading centre (CNSC). The most prominent are the Cocos, Carnegie and Malpelo ridges. In this work, we investigate the seismic structure of the Carnegie ridge along two profiles acquired during the South American Lithospheric Transects Across Volcanic Ridges (SALIERI) 2001 experiment. Maximum crustal thickness is ∼19 km in the central Carnegie profile, located at ∼85°W over a 19–20 Myr old oceanic crust, and only ∼13 km in the eastern Carnegie profile, located at ∼82°W over a 11–12 Myr old oceanic crust. The crustal velocity models are subsequently compared with those obtained in a previous work along three other profiles over the Cocos and Malpelo ridges, two of which are located at the conjugate positions of the Carnegie ones. Oceanic layer 2 thickness is quite uniform along the five profiles regardless of the total crustal thickness variations, hence crustal thickening is mainly accommodated by layer 3. Lower crustal velocities are systematically lower where the crust is thicker, thus contrary to what would be expected from melting of a hotter than normal mantle. The velocity-derived crustal density models account for the gravity and depth anomalies considering uniform and normal mantle densities (3300 kg m−3), which confirms that velocity models are consistent with gravity and topography data, and indicates that the ridges are isostatically compensated at the base of the crust. Finally, a two-dimensional (2-D) steady-state mantle melting model is developed and used to illustrate that the crust of the ridges does not seem to be the product of anomalous mantle temperatures, even if hydrous melting coupled with vigorous subsolidus upwelling is considered in the model. In contrast, we show that upwelling of a normal temperature but fertile mantle source that may result from recycling of oceanic crust prior to melting, accounts more easily for the estimated seismic structure as well as for isotopic, trace element and major element patterns of the GVP basalts.

Description: Analyses of a 500-yr control integration with the non-flux-adjusted coupled atmosphere–sea ice–ocean model ECHAM5/Max-Planck-Institute Ocean Model (MPI-OM) show pronounced multidecadal fluctuations of the Atlantic overturning circulation and the associated meridional heat transport. The period of the oscillations is about 70–80 yr. The low-frequency variability of the meridional overturning circulation (MOC) contributes substantially to sea surface temperature and sea ice fluctuations in the North Atlantic. The strength of the overturning circulation is related to the convective activity in the deep-water formation regions, most notably the Labrador Sea, and the time-varying control on the freshwater export from the Arctic to the convection sites modulates the overturning circulation. The variability is sustained by an interplay between the storage and release of freshwater from the central Arctic and circulation changes in the Nordic Seas that are caused by variations in the Atlantic heat and salt transport. The relatively high resolution in the deep-water formation region and the Arctic Ocean suggests that a better representation of convective and frontal processes not only leads to an improvement in the mean state but also introduces new mechanisms determining multidecadal variability in large-scale ocean circulation.

Description: The tropics have been suggested as the drivers of global ocean and atmosphere circulation and biogeochemical cycling during the extreme warmth of the Cretaceous period1, 2; but the links between orbital forcing, freshwater runoff and the biogeochemistry of continental margins in extreme greenhouse conditions are not fully understood. Here we present Cretaceous records of geochemical tracers for freshwater runoff obtained from a sediment core off the Ivory Coast that indicate that alternating periods of arid and humid African climate were driven by orbital precession. Our simulations of the precession-driven patterns of river discharge with a global climate model suggest that ocean anoxia and black shale sedimentation were directly caused by high river discharge, and occurred specifically when the northern equinox coincided with perihelion (the minimum distance between the Sun and the Earth). We conclude that, in a warm climate, the oceans off tropical continental margins respond rapidly and sensitively to even modest changes in river discharge.

Description: The ocean area south of the Antarctic Circumpolar Current (ACC) frontal system is a region of major watermass modification. Influx of North Atlantic Deep Water (NADW), small-scale mixing, eddy transport and diffusion, as well as the fluxes of momentum and buoyancy at the sea surface combine in a complex array of processes to generate the unique stratification of the Southern Ocean with its southward uprising isopycnals and northward flux of Antarctic Intermediate Water (AAIW) and Antarctic Bottom Water. Comprehensive analytical models of this scenario are rare. The authors develop and apply a model based on zonally and temporally averaged theory to explain the conversion of NADW into AAIW with all of the aforementioned processes contained in an extremely simplified way. Eddies appear via a transformed Eulerian mean (TEM) approach with a conventional downgradient parameterization of the meridional density flux. The structure of the eddy coefficient is estimated from hydrographic and wind stress data by a simple inverse approach. Mixing is limited to a near-surface layer and is treated in a most simple entrainment form. The model determines the zonal mean density stratification in the Southern Ocean and the baroclinic transport of the ACC from the applied wind stress and the surface density flux and unravels the role and importance of the different processes responsible for shaping the stratification (Ekman and eddy-induced advection and pumping, mixing, surface buoyancy flux, and eddy-induced diffusion). All of these processes must be present to yield an agreement between the simulated stratification and the observed one, but details of their parameterization might not be too critical. The ACC transport is shown to have a contribution forced by the local wind stress as well as another contribution relating to the nonlocal forcing by wind stress and density flux over the entire Antarctic zone.

Description: We have analyzed the decadal-scale variability in the Tropical Pacific by means of observations and numerical model simulations. The two leading modes of the sea surface temperature (SST) variability in the central western Pacific are a decadal mode with a period of about 10 years and the ENSO mode with a dominant period of about four years. The SST anomaly pattern of the decadal mode is ENSO-like. The decadal mode, however, explains most variance in the western equatorial Pacific and off the equator. A simulation with an ocean general circulation model (OGCM) forced by reanalysis data is used to explore the origin of the decadal mode. It is found that the variability of the shallow subtropical-tropical overturning cells (STCs) is an important factor in driving the decadal mode. This is supported by results from a multi-century integration with a coupled ocean-atmosphere general circulation model (CGCM) that realistically simulates Tropical Pacific decadal variability. Finally, the sensitivity of the STCs to greenhouse warming is discussed by analyzing the results of a scenario integration with the same CGCM.

Description: The two agar-producing red algae, Gracilaria chilensis C. J. Bird, McLachlan & E. C. Oliveira and Gracilaria conferta (Schousboe ex Montagne) Montagne, responded with hydrogen peroxide (H2O2) release when agar oligosaccharides were added to the medium. In G. conferta, a transient release was observed, followed by a refractory state of 6 h. This response was sensitive to chemical inhibitors of NADPH oxidase, protein kinases, protein phosphatases, and calcium translocation in the cell, whereas it was insensitive to inhibitors of metalloenzymes. Transmission electron microscopic observations of the H2O2-dependent formation of cerium peroxide from cerium chloride indicated oxygen activation at the plasma membrane of G. conferta. A putative system, consisting of a receptor specific to agar oligosaccharides and a plasma membrane-located NADPH oxidase, appears to be responsible for the release of H2O2 in G. conferta. Subcellular examination of G. chilensis showed that the H2O2 release was located in the cell wall. It was sensitive to inhibitors of metalloenzymes and flavoenzymes, and no refractory state was observed. The release was correlated with accumulation of an aldehyde in the algal medium, suggesting that an agar oligosaccharide oxidase is present in the apoplast of G. chilensis. The presence of this enzyme could also be demonstrated by polyacrylamide electrophoresis under nondenaturating conditions and proven to be variable. Cultivation of G. chilensis at 16 to 17°C resulted in significantly stronger expression of agar oligosaccharide oxidase than cultivation at 12°C, which indicates that the enzyme is used under conditions that generally favor microbial agar macerating activity.

Description: We investigated the effects of ircinin-1, a lipid compound (a C25 sesterterpene tetronic acid) isolated from marine sponges (Sarcotragus sp.), on the modulation of cell cycle and induction of apoptosis in SK-MEL-2 human skin cancer cells (mutant p53). Ircinin-1 treatment on SK-MEL-2 cells resulted in a dose-dependent inhibition of cell growth and induced apoptotic cell death. Flow cytometric analysis revealed that ircinin-1 resulted in G1 arrest in cell cycle progression which was associated with a marked decrease in the protein expression of D-type cyclins and their activating partners Cdk 4 and 6 with concomitant inductions of p21WAF1/CIP1 and p27KIP1. The induction of p21WAF1/CIP1 appears to be transcriptionally upregulated and is p53-independent. In addition, ircinin-1 suppressed the phosphorylation of pRb protein and increased the co-association of pRb or proliferating cell nuclear antigen (PCNA) with p21WAF1/CIP1 in these cells. Ircinin-1 treatment also resulted in induction of apoptosis as determined by morphological changes, DNA fragmentation, alternated ratio of Bax/Bcl-2, cleavages of poly(ADP-ribose) polymerase and PLC-γ1, and flow cytometric analysis. Ircinin-1 also induced cytochrome c release, cleavage activations of caspase-3 and -9, and upregulation of Fas and Fas-L. Even though the inhibitor of apoptosis protein (IAP) was expressed in ircinin-1-untreated or -treated SK-MEL-2 cells, only the level of cIAP-1, but not XIAP or cIAP-2, was decreased during ircinin-1-induced apoptosis at Western blot and RT-PCR studies. Taken together, these findings suggest that ircinin-1 has strong potential for development as an agent for prevention against skin cancer