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  • American Physical Society  (28,074)
  • Oxford University Press  (15,084)
  • International Union of Crystallography  (9,298)
  • Blackwell Publishing Ltd  (7,461)
  • 2005-2009  (34,601)
  • 1995-1999  (25,316)
  • 1980-1984
  • 1935-1939
  • 2007  (34,601)
  • 1995  (25,316)
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  • 2005-2009  (34,601)
  • 1995-1999  (25,316)
  • 1980-1984
  • 1935-1939
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  • 1
    Publication Date: 2017-04-04
    Description: We perform an analysis on the dissipative Olami-Feder-Christensen model on a small world topology considering avalanche size differences. We show that when criticality appears, the probability density functions (PDFs) for the avalanche size differences at different times have fat tails with a q-Gaussian shape. This behavior does not depend on the time interval adopted and is found also when considering energy differences between real earthquakes. Such a result can be analytically understood if the sizes (released energies) of the avalanches (earthquakes) have no correlations. Our findings support the hypothesis that a self-organized criticality mechanism with long-range interactions is at the origin of seismic events and indicate that it is not possible to predict the magnitude of the next earthquake knowing those of the previous ones.
    Description: Published
    Description: 2.3. TTC - Laboratori di chimica e fisica delle rocce
    Description: JCR Journal
    Description: reserved
    Keywords: SOC, earthquakes interaction ; 05. General::05.01. Computational geophysics::05.01.04. Statistical analysis
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 2
    Publication Date: 2022-05-25
    Description: © 2007 The Author et al. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/ by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The definitive version was published in Nucleic Acids Research 35 (2007): 2107-2115, doi:10.1093/nar/gkm049.
    Description: Trypanosomatids contain an unusual DNA base J (ß-D-glucosylhydroxymethyluracil), which replaces a fraction of thymine in telomeric and other DNA repeats. To determine the function of base J, we have searched for enzymes that catalyze J biosynthesis. We present evidence that a protein that binds to J in DNA, the J-binding protein 1 (JBP1), may also catalyze the first step in J biosynthesis, the conversion of thymine in DNA into hydroxymethyluracil. We show that JBP1 belongs to the family of Fe2+ and 2-oxoglutarate-dependent dioxygenases and that replacement of conserved residues putatively involved in Fe2+ and 2-oxoglutarate-binding inactivates the ability of JBP1 to contribute to J synthesis without affecting its ability to bind to J-DNA. We propose that JBP1 is a thymidine hydroxylase responsible for the local amplification of J inserted by JBP2, another putative thymidine hydroxylase.
    Description: This work was funded by a grant from the Netherlands Organization for Scientific Research and Chemical Sciences (NWO-CW) to P.B., NIH grant A1063523 to R.S. and NIH grant GM063584 to R.P.H.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
    Publication Date: 2022-05-25
    Description: © 2007 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The definitive version was published in Nucleic Acids Research 36 (2008): D607-D611, doi:10.1093/nar/gkm941.
    Description: The starlet sea anemone, Nematostella vectensis, is a basal metazoan organism that has recently emerged as an important model system in developmental biology and evolutionary genomics. StellaBase, the Nematostella Genomics Database (http://stellabase.org), was developed in 2005 as a resource to support the Nematostella research community. Recently, it has become apparent that Nematostella may be a particularly useful system for studying (i) microevolutionary variation in natural populations, and (ii) the functional evolution of human disease genes. We have developed two new databases that will foster such studies: StellaBase Disease (http://stellabase.org/disease) is a relational database that houses 155 904 invertebrate homologous isoforms of human disease genes from four leading genomic model systems (fly, worm, yeast and Nematostella), including 14 874 predicted genes from the sea anemone itself. StellaBase SNP (http://stellabase.org/SNP) is a relational database that describes the location and underlying type of mutation for 20 063 single nucleotide polymorphisms.
    Description: This work was supported by NSF grant FP-91656101-0 to J.C.S. and J.R.F. and EPA Grant F5E11155 to A.R.M. and J.R.F. and by a Postdoctoral Scholar Program at the Woods Hole Oceanographic Institution, with funding provided by The Beacon Institute for Rivers and Estuaries, and the J. Seward Johnson Fund to A.M.R.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 4
    Publication Date: 2022-05-25
    Description: © 2007 The Author(s). This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The definitive version was published in Bioinformatics 23 (2007): 1434-1436, doi:10.1093/bioinformatics/btm109.
    Description: Web content syndication through standard formats such as RSS and ATOM has become an increasingly popular mechanism for publishers, news sources, and blogs to disseminate regularly updated content. These standardized syndication formats deliver content directly to the subscriber, allowing them to locally aggregate content from a variety of sources instead of having to find the information on multiple websites. The uBioRSS application is a "taxonomically intelligent" service customized for the biological sciences. It aggregates syndicated content from academic publishers and science news feeds, then uses a taxonomic name entity recognition algorithm to identify and index taxonomic names within those data streams. The resulting name index is cross-referenced to current global taxonomic datasets to provide context for browsing the publications by taxonomic group. This process, called taxonomic indexing, draws upon services developed specifically for biological sciences, collectively referred to as "taxonomic intelligence." Such value-added enhancements can provide biologists with accelerated and improved access to current biological content.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
    Publication Date: 2022-05-26
    Description: © The Author 2006. This article is posted here by permission of Oxford University Press. The definitive version was published in Nucleic Acids Research 34 (2006): 1-9, doi:10.1093/nar/gkj405.
    Description: The goal of this group project has been to coordinate and bring up-to-date information on all genes of Escherichia coli K-12. Annotation of the genome of an organism entails identification of genes, the boundaries of genes in terms of precise start and end sites, and description of the gene products. Known and predicted functions were assigned to each gene product on the basis of experimental evidence or sequence analysis. Since both kinds of evidence are constantly expanding, no annotation is complete at any moment in time. This is a snapshot analysis based on the most recent genome sequences of two E.coli K-12 bacteria. An accurate and up-to-date description of E.coli K-12 genes is of particular importance to the scientific community because experimentally determined properties of its gene products provide fundamental information for annotation of innumerable genes of other organisms. Availability of the complete genome sequence of two K-12 strains allows comparison of their genotypes and mutant status of alleles.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/vnd.ms-excel
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  • 6
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    Oxford University Press
    In:  Handbook of Avian Hybrids of the World vol. 76, 1, pp. 59-61
    Publication Date: 2024-01-12
    Keywords: book review ; geographic distribution ; hybridisation ; birds
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/review
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  • 7
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Journal of metamorphic geology 13 (1995), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Abstract Microprobe analyses of feldspars in granite mylonites containing flame perthite give compositions that invariably plot as three distinct clusters on a ternary feldspar diagram: orthoclase (Or92–97), albite and oligoclase-andesine. The albite occurs as grains in the matrix, as flame-shaped lamellae in orthoclase, and in patches within plagioclase grains.We present a metamorphic model for albite flame growth in the K-feldspar in these rocks that is related to reactions in plagioclase, rather than alkali feldspar exsolution. Flame growth is attributed to replacement and results from a combination of two retrograde reactions and one exchange reaction under greenschist facies conditions. Reaction 1 is a continuous or discontinuous (across the peristerite solvus) reaction in plagioclase, in which the An component forms epidote or zoisite. Most of the albite component liberated by Reaction 1 stays to form albite in the host plagioclase, but some Na migrates to form the flames within the K-feldspar. Reaction 2 is the exchange of K for Na in K-feldspar. Reaction 3 is the retrograde formation of muscovite (as ‘sericite’) and has all of the chemical components of a hydration reaction of K-feldspar. The Si and Al made available in the plagioclase from Reaction 1 are combined with the K liberated from the K-feldspar, to produce muscovite in Reaction 3. The muscovite forms in the plagioclase, rather than the K-feldspar, as a result of the greater mobility of K relative to Al. The composition of the albite flames is controlled by both the peristerite and the alkali feldspar miscibility gaps and depends on the position of these solvi at the pressure and temperature that existed during the reaction. Using an initial plagioclase composition of An20, the total reaction can be summarized as:20 oligoclase + 1 K-feldspar + 2 H2O = 2 zoisite + muscovite + 2 quartz + 15 albiteplagioclase+ 1 albiteflame.This model does not require that any additional feldspar framework be accreted at replacement sites: Na and K are the only components that must migrate a significant distance (e.g. from one grain to the next), allowing Al to remain within the altering plagioclase grain. The resulting saussuritization is isovolumetric.The temperature and extent of replacement depends on when, and how much, water infiltrates the rock. The fugacity of the water, and therefore the pressure of the fluid, may have been significantly lower than lithostatic during flame growth.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Journal of metamorphic geology 13 (1995), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Abstract In metapelitic schists of the north-eastern Weekeroo Inliers, Olary Block, Willyama Supergroup, South Australia, syn-S1 and syn-S2 assemblages involving staurolite, garnet, biotite and another mineral, most probably cordierite, were overgrown by large syn-S3 andalusite porphyroblasts, owing to isobaric heating from metamorphic conditions that existed during the development of S2. Conditions during the development of S3 probably just reached the andalusite—sillimanite transition. During the development of S4, at somewhat lower temperatures than those that accompanied the development of S3, the following reaction occurred:staurolite + chlorite + muscovite ± biotite + andalusite + quartz + H2O.The amount of retrogression is controlled primarily by the amount of H2O added by infiltration. As the syn-S3 matrix assemblage was stable during the development of S4, but the andalusite porphyroblasts were no longer stable with the matrix when H2O was added, the retrogression is focused in and around the porphyroblasts. With enough H2O available, and if quartz was consumed before biotite in a porphyroblast, then the following reaction occurred:staurolite + chlorite + muscovite + corundum ± biotite + andalusite + H2O.This reaction allowed corundum inclusions in the andalusite to grow, regardless of the presence of quartz in the matrix assemblage.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Journal of metamorphic geology 13 (1995), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Abstract Effects of post-entrapment fluid-inclusion modification are examined with reference to retrogression-related quartz veins from the Caledonian, Øse Thrust, northern Norway. The inclusions occur in secondary trails, and contain high-density hypersaline aqueous fluids. On morphological characteristics, they are subdivided into, Type A: elongate, ellipsoidal and/or irregular inclusions, and Type B: more equant, regular, and/or negative crystal form. With reference to previous research on post-entrapment modification of inclusions in quartz it is proposed that Type A inclusions experienced little or no post-entrapment modification, whereas Type B inclusions show features characteristic of post-entrapment permanent inelastic stretching and/or leakage. This produces increased homogenization temperatures (Th), associated with increased inclusion volume and lowering of density, whilst maintaining constant salinity. The similarity of data for degree of fill and salinity between Type A and Type B inclusions indicates that Type B inclusions have primarily modified by stretch rather than leakage. However, the spread towards slightly larger volume of vapour in Type B inclusions suggests that some leakage has also occurred. Because stretched and/or partially leaked inclusions have increased Th, isochore projections significantly underestimate trapping pressure (Pt) relative to unmodified inclusions. Therefore, recognition of post-entrapment inclusion modification due to overpressure is crucial to avoid misinterpretation of data, but has considerable potential for constraining the detail of P-T trajectories of individual rocks. On this basis, rocks from the Øse Thrust zone, north Norway, are shown to have experienced rapid uplift on a ‘clockwise’P-T-t path during the final stages of Caledonian (Scandian) orogenesis.
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  • 10
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Journal of metamorphic geology 13 (1995), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Abstract The Erzgebirge Crystalline Complex (ECC) is a rare example where both‘crustal’eclogites and mantle-derived garnet-bearing ultramafic rocks (GBUs) occur in the same tectonic unit. Thus, the ECC represents a key complex for studying tectonic processes such as crustal thickening or incorporation of mantle-derived material into the continental crust. This study provides the first evidence that high-pressure metamorphism in the ECC is of Variscan age. Sm-Nd isochrons define ages of 333 ± 6 (Grt-WR), 337± 5 (Grt-WR), 360± 7 (Grt-Cpx-WR) (eclogites) and 353 ± 7 Ma (Grt-WR) (garnet-pyroxenite). 40Ar/39Ar spectra of phengite from two eclogite samples give plateau ages of 348 ± 2 and 355 ± 2 Ma. The overlap of ages from isotopic systems with blocking temperatures that differ by about 300 ° C indicates extremely fast tectonic uplift rates. Minimum cooling rates were about 50° C Myr-1. As a consequence, the closure temperature of the specific isotopic system is of minor importance, and the ages correspond to the time of high-pressure metamorphism. Despite textural equilibrium and metamorphic temperatures in excess of 800° C, clinopyroxene, garnet and whole rock do not define a three-point isochron in three of four samples. The metamorphic clinopyroxenes seem to have inherited their isotopic signature from magmatic precursors. Rapid tectonic burial and uplift within only a few million years might be the reason for the observed Sm-Nd disequilibrium. The εNd values of the eclogites (+4.4 to +6.9) suggest the protoliths were derived from a long-term depleted mantle, probably a MORB source, whereas the isotopically enriched garnet-pyroxenite (εNd–2.9) might represent subcontinental mantle material, emplaced into the crust prior to or during collision. The similarity of ages of the two different rock types suggests a shared metamorphic history.
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