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  • Articles  (140,423)
  • Other Sources  (64)
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  • 1995-1999  (72,791)
  • 1990-1994  (67,696)
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  • 1
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
    Type: info:eu-repo/semantics/book
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  • 2
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 137-144 
    ISSN: 1476-5535
    Keywords: Composting ; Explosives ; Propellants ; Thermophilic ; Mesophilic ; Bioremediation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Composting was investigated as a bioremediation technology for clean-up of sediments contaminated with explosives and propellants. Two field demonstrations were conducted, the first using 2,4,6-trinitrotoluene (TNT), octahydro-1,3,5,7-tetranitro-1,3,5,7-tetraazocine (HMX), hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX), and N-methyl-N,2,4,6-tetranitroaniline (tetryl) contaminated sediment, and the second using nitrocellulose (NC) contaminated soil. Tests were conducted in thermophilic and mesophilic aerated static piles. Extractable TNT was reduced from 11840 mg/kg to 3 mg/kg, and NC from 13090 mg/kg to 16 mg/kg under thermophilic conditions. Under mesophilic conditions, TNT was reduced from 11 190 mg/kg to 50 mg/kg. The thermophilic and mesophilic half-lives were 11.9 and 21.9 days for TNT, 17.3 and 30.1 days for RDX, and 22.8 and 42.0 days for HMX, respectively. Known nitroaromatic transformation products increased in concentration over the first several weeks of the test period, but decreased to low concentrations thereafter.
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  • 3
    ISSN: 1476-5535
    Keywords: Fructo-oligosaccharide ; 1-Kestose ; Glycoprotein ; Fructosyl-transferring activity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Two extracellular β-fructofuranosidases (E-1 andE-2) fromAureobasidium sp. ATCC 20524, producing 1-kestose (1F-β-fructofuranosyl-sucrose) from sucrose, were purified to homogeneity. Molecular weights of the enzymes were estimated to be about 304000 (E-1) and 315000 (E-2) Da by gel filtration. The enzymes contained 33% (w/w) (E-1) and 27% (w/w) (E-2) carbohydrate. TheK m values for sucrose ofE-1 andE-2 andE-2 were 0.34 and 0.28 M, respectively. were 0.34 and 0.28 M, respectively. The enzymatic profiles of these enzymes were almost identical to intracellular enzymesP-1 andP-2 except for the differences in carbohydrate content andK m values ofE-2 andP-2.
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  • 4
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 149-161 
    ISSN: 1476-5535
    Keywords: Toxin ; Secondary plant metabolite ; Allelochemical ; Insecticide ; Mycotoxin ; Endocytobiont
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Many species of insects cultivate, inoculate, or contain symbiotic fungi. Insects feed on plant materials that contain plant-produced defensive toxins, or are exposed to insecticides or other pesticides when they become economically important pests. Therefore, it is likely that the symbiotic fungi are also exposed to these toxins and may actually contribute to detoxification of these compounds. Fungi associated with bark beetles, ambrosia beetles, termites, leaf-cutting ants, long-horned beetles, wood wasps, and drug store beetles can variously metabolize/detoxify tannins, lignins, terpenes, esters, chlorinated hydrocarbons, and other toxins. The fungi (Attamyces) cultivated by the ants and the yeast (Symbiotaphrina) contained in the cigarette beetle gut appear to have broad-spectrum detoxifying abilities. The present limiting factor for using many of these fungi for large scale detoxification of, for example, contaminated soils or agricultural commodities is their slow growth rate, but conventional strain selection techniques or biotechnological approaches should overcome this problem.
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  • 5
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 163-172 
    ISSN: 1476-5535
    Keywords: Biosensors ; Process control ; Enzyme thermistor ; Immunoassay ; Bio-field effect transistor
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary A short review about the biosensor research activities for bioprocess monitoring in the F.R.G. after its reunification is given. The principles of biosensor applications are presented. In situ sensors and sensors based on the principles of flow injection analysis are studied. Some applications of a four-channel enzyme thermistor, bio-field effect transistors, and immunoanalysis systems for real process monitoring are presented.
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  • 6
    ISSN: 1476-5535
    Keywords: Vibrio vulnificus ; Oyster ; Monoclonal antibody ; Most probable number ; Enzyme immunoassay
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Oysters, suspended particulate matter (SPM), sediment and seawater samples were collected from West Galveston Bay, Texas over a 16-month period and analyzed for the presence ofVibrio vulnificus, a naturally-occurring human marine pathogen. Detection and enumeration ofV. vulnificus was performed using a species-specific monoclonal antibody (mAb FRBT37) in an enzyme immunoassay (EIA)-most probable number (MPN) procedure capable of detecting as few as 2000 target organisms.V. vulnificus was not detected in seawater, oyster or SPM samples during the cold weather months, but was detected at low levels in several sediment samples during this time period. Increased levels of the organism were first observed in early spring in the sediment, and then in SPM and oysters. The major increase inV. vulnificus occurred only after the seawater temperature had increased above 20°C and the winter-spring rainfall had lowered the salinity below 16‰. The highestV. vulnificus levels at each site were associated with suspended particulate matter. These results are consistent with the hypothesis that (1)V. vulnificus over-winters in a floc zone present at the sediment-water interface, (2) is resuspended into the water column in early spring following changes in climatic conditions, (3) colonizes the surfaces of zooplankton which are also blooming during early spring and (4) are ingested by oysters during their normal feeding process.
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  • 7
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 235-238 
    ISSN: 1476-5535
    Keywords: Biodegradation ; Pseudomonas putida ; Immobilization ; Sodium cyanide
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Pseudomonas putida, isolated from contaminated industrial wastewaters and soil sites, was found to utilize sodium cyanide (NaCN) as a sole source of carbon and nitrogen. Cells, immobilized in calcium alginate beads (1–2 mm diameter) were aerated in air-uplift-type fluidized batch bioreactor containing 100–400 ppm of NaCN. Degradation of NaCN was monitored for 168 h by analyzing gaseous and dissolved ammonia (NH3), CO2, pH and optical density. The results indicated that the alginate-immobilized cells ofP. putida were able to degrade NaCN into NH3 and CO2 in a time-dependent manner.
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 229-234 
    ISSN: 1476-5535
    Keywords: Heat shock protein (HSP) ; Yeast ; Saccharomyces ; Viability ; Thermotolerance ; Ethanol tolerance
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Heat shock and ethanol stress of brewing yeast strains resulted in the induction of a set of proteins referred to as heat shock proteins (HSPs). At least six strongly induced HSPs were identified in a lager brewing strain and four HSPs in an ale brewing strain. Four of these HSPs with molecular masses of approximately 70, 38, 26 and 23 kDa were also identified in two laboratory strains ofSaccharomyces cerevisiae. The appearance of HSPs correlated with increased survival of strains at elevated temperatures and high concentrations of ethanol. These results suggest that HSPs may play a role in the ethanol and thermotolerance of yeasts. The properties of these proteins and membrane fatty acids in relation to heat and ethanol shock are being investigated.
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  • 9
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 239-245 
    ISSN: 1476-5535
    Keywords: Novel polysaccharide ; Bacillus licheniformis ; Raffia venifera ; d-Glucose ; d-Mannose ; d-Xylose
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary A polysaccharide producing strain ofBacillus licheniformis was isolated from exudate of raffia palm,Raffia vinifera. The optimum conditions for growth and polysaccharide production have been investigated and established. No appreciable polysaccharide was formed on glucose. It grew best in Czapek-Dox media with sucrose as the carbon source. The polysaccharide has been characterized as a heteropolymer containingd-glucose,d-mannose andd-xylose.
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  • 10
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 269-269 
    ISSN: 1476-5535
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    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
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  • 11
    ISSN: 1476-5535
    Keywords: β-Fructofuranosidase ; Deglycosylation ; Aureobasidium ; Enzymatic stability
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Most of the carbohydrate moiety of β-fructofuranosidaseP-1 fromAureobasidium sp. ATCC 20524 was removed by endo-β-N-acetylglucosaminidase F. A subunit of 94000 Da was observed in SDS-PAGE after deglycosylation. TheK m value for sucrose was not changed by deglycosylation but the stability at pH 4–5 and 50°C was decreased. The deglycosylated enzyme was more sensitive to proteases such as pronase E and subtilisin than the native enzyme. It is considered that the carbohydrate moiety of β-fructofuranosidaseP-1 contributes to the stability of the enzyme but is not essential in its catalytic function.
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  • 12
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    Bulletin of mathematical biology 54 (1992), S. 1-20 
    ISSN: 1522-9602
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Abstract An organism persists only if it satisfies internal and external constraints. Within the organism networks of processes meet the constraints. In such networks a principle of matching often obtains: the pattern of coupling among processes matches the correlation among constraints. That is, a module—a cluster of coupled processes—meets a constraint. Dissociable modules meet dissociàble constraints. A hierarchy of modules meets a hierarchy of constraints. We have inquired whether such matching is predicted by an optimality criterion in a simple example. We find that in an ensemble of networks with unreliable processes, the networks that meet the constraints with highest reliability obey the principle of matching. The difference in reliability between modular and nonmodular networks that meet the same constraints is a function of the probability of success per process. Our results suggest that this difference is maximal at a probability of success that increases monotonically with the number of processes in the network.
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  • 13
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    Bulletin of mathematical biology 54 (1992), S. 59-75 
    ISSN: 1522-9602
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    Topics: Biology , Mathematics
    Notes: Abstract A method is described for estimating the distribution and hence testing the statistical significance of sequence similarity scores obtained during a data-bank search. Maximum-likelihood is used to fit a model to the scores, avoiding any costly simulation of random sequences. The method is applied in detail to the Smith-Waterman algorithm when gaps are allowed, and is shown to give results very similar to those obtained by simulation.
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  • 14
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    Bulletin of mathematical biology 54 (1992), S. 401-412 
    ISSN: 1522-9602
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    Notes: Abstract We develop a theory for host seeking decisions in mosquitoes that explicitly considers the tradeoffs mosquitoes face in allocation to somatic and gametic function. Specifically, we consider conditions under which mosquitoes should seek out nectar and blood hosts upon encountering host odours. Results from development of a dynamic model that considers free and crop energy states suggest that mosquitoes should seek out blood hosts under a wide variety of conditions but that decisions to seek nectar depends upon crop volume, concentration and free energy. This pattern arises because mosquitoes carrying large crop loads are constrained in their ability to obtain large blood meals due to space limitations in the abdomen. The predicted patterns of behaviour are supported by published observations of mosquito behaviour.
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    Bulletin of mathematical biology 54 (1992), S. 413-422 
    ISSN: 1522-9602
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    Notes: Abstract In behavioral ecology, diet selection is often predicted by using a theory in which it is assumed that behaviors have evolved to maximize the rate of intake of energy. In this theory, it is assumed that fitness is a monotonic function of energy intake. An alternative is to deal directly with fitness, measured in terms of expected reproduction, and thus connect short term behavior with reproduction. Following the usual assumptions of the theory of diet choice, fitness satisfies a partial differential-difference equation. Conditions under which rate maximizing and state variable theories of diet selection yield identical predictions are identified. When predation, as well as starvation, is a source of mortality, the identification is not as complete.
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    Bulletin of mathematical biology 54 (1992), S. 445-464 
    ISSN: 1522-9602
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    Notes: Abstract Environmental uncertainty can be both a cause and consequence of chance variation in many of the phenotypic factors associated with the control of clutch size in birds. When such uncertainty inflates or otherwise influences the variance associated with expected reproductive success for any genotype, it will also influence the resulting phenotypic optima. Random variation that affects the evolution of clutch size optima explicitly may occur both within (intra-) and across (inter-) generations. Examples of intra-generational uncertainty could include chance variation in: (1) the quality and quantity of offspring, (2) parental quality, and (3) temporal resources like food. Inter-generational uncertainty would include chance variation in demographic and population characters. With respect to clutch (or litter) size, almost all forms of uncertainty tend to favor an optimum (genetic) strategy with a clutch that is smaller than the clutch associated with the apparent or actual maximal fitness of an individual parent. The overall effect of all the components of uncertainty can be evaluated through the integration of all this phenotypic variation: however each step of the integration is a conditional expectation of each component. Therefore, a single factor analysis may indicate a false optimum, and an integrated analysis of all components is necessary to evaluate the importance of their individual and joint effects on the adaptive evolution of clutch size.
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    Bulletin of mathematical biology 54 (1992), S. 503-519 
    ISSN: 1522-9602
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    Notes: Abstract A difference equation model for the dynamics of a semelparous size-structured species consisting of juvenile and adult individuals is derived and studied. The adult population consists of two size classes, a smaller class and a larger more fertile class. Negative feedback occurs through slowed juvenile growth due to increased total population levels during the developmental period and consequently a smaller adult size at maturation. Intra-specific competition coefficients are size dependent and measure the strength of intra-specific competition between juveniles and adults. It is shown that equilibrium states in which adults and juveniles occur together at all times are in general destabilized by significantly increased juvenilevs adults competition with the result that stable periodic cycles appear, in which the generations alternate in time and hence avoid competition. This result supports the tenet that intra-specific competition between juveniles and adults is destabilizing. Exceptions to this destabilization principle are found, however, in which populations exhibiting non-equilibrium, aperiodic dynamics can be equilibrated by increase competition between juveniles and adults. This occurs, for example, when adult fertility and competition coefficients are significantly size class dependent.
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    Bulletin of mathematical biology 54 (1992), S. 537-561 
    ISSN: 1522-9602
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    Notes: Abstract An epithelial cell is modeled as a single compartment, bounded by apical and basolateral cell membranes, and containing two nonelectrolyte solute species, nominally NaCl and KCl. Membrane transport of these species may be metabolically driven, or it may follow the transmembrane concentration gradients, either singly (a channel) or jointly (a cotransporter). To represent the effect of stretch-activated channels or shrinkage-activated cotransporters, the membrane permeabilities and cotransport coefficients are permitted to be functions of cell volume. When this epithelium is considered as a dynamical system, conditions are indicated which guarantee the uniqueness and stability of equilibria. Experimentally, many epithelial cells can regulate their volume, and such volume regulatory capability is defined for this model. It is clearly distinct from dynamical stability of the equilibrium and requires more stringent conditions on the volume-dependent permeabilities and cotransporters. For a previously developed model of the toad urinary bladder (Strieteret al., 1990,J. gen. Physiol. 96, 319–344) the uniqueness and stability of its equilibria are indicated. The analysis also demonstrates that under some conditions a second stable equilibrium may appear, along with a saddle-node bifurcation. This is illustrated numerically in a modified model of the epithelium of the thick ascending limb of Henle.
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  • 19
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    Bulletin of mathematical biology 54 (1992), S. 687-694 
    ISSN: 1522-9602
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    Bulletin of mathematical biology 54 (1992), S. 649-672 
    ISSN: 1522-9602
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    Notes: Abstract Models of the dynamical interactions important in generating immune reactivity have generally assumed that the immune system is a single well-stirred compartment. Here we explicitly take into account the compartmentalized nature of the immune system and show that qualitative conclusions, such as the stability of the immune steady state, depend on architectural details. We examine a simple model idiotypic network involving only two types of B cells and antibody molecules. We show, for model parameters used by De Boeret al. (1990,Chem. Eng. Sci. 45, 2375–2382), that the immune steady state is unstable in a one compartmental model but stable in a two compartment model that contains both a lymphoid organ, such as the spleen, and the circulatory system.
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    Bulletin of mathematical biology 54 (1992), S. 839-873 
    ISSN: 1522-9602
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    Notes: Abstract Using the chromium release assay and the single cell assay in agarose, we study the cytotoxic reaction of the MHC-restricted T lymphocyte clones P89:15 and P1:3, which recognize distinct but specific tumour antigens on the surface of syngeneic P815 mastocytoma cells. We propose a mathematical model which describes these experiments, accounts for the strongly non-Michaelian behaviour of the reaction and permits us to estimate the kinetic parameters characterizing effector-target conjugation and lethal hit delivery. The results show that the binding and lytic activity of effector cells is modulated by the number of targets bound to them. The binding of a second target by an effector having already a target bound is facilitated; on the other hand, an effector having bound two targets delivers a lethal hit more slowly than one with a single target bound. We investigate the role of these kinetic properties in the competition between the process of tumour progression due to cancer cell replication and the process of tumour regression due to T lymphocyte cytotoxic activity. For both clones, we estimate the effector-target ratio beyond which rejection prevails. This ratio is nine times larger for P1:3 than for P89:15. Furthermore, our analysis suggests that there exists an optimal specificity minimizing this ratio. Deviations from this optimum, be it in the sense of an increase or decrease of specificity, tendsto stabilize the tumoural state: a situation which in the broader context of the immune response evolution and regulation can be viewed as animmune response dilemma.
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    Bulletin of mathematical biology 54 (1992), S. 929-938 
    ISSN: 1522-9602
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    Notes: Abstract In this paper a stochastic model for a two-compartment system which incorporates Erlang residence time distributions (i.e. the residence times have the gamma distribution where the shape parameters assume integer values only) into each compartment is generalized to include random rate coefficients. Analytical forms of the model are derived for the case where the rate coefficients have gamma densities. A relationship is established between the new models and existing models that are in current practical usage.
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    Bulletin of mathematical biology 54 (1992), S. 939-955 
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    Notes: Abstract Oscillations and chaos can be modelled and observed in a realistic simulation model of interacting prey-predator populations based on Monte Carlo simulation methods. These nonlinear phenomena are linked with some biological and physical bifurcation parameters and mathematical tools from dynamical systems theory may be used in order to characterize this behaviour. Chaotic dynamics are therefore, in our simulation, more the rule than the exception, and are related to delays associated with spatial degrees of freedom.
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    Bulletin of mathematical biology 54 (1992), S. 1023-1038 
    ISSN: 1522-9602
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    Notes: Abstract Cells displaying the classic multidrug resistant (MDR) phenotype possess a transmembrane protein (p170 or P-glycoprotein) which can actively extrude cytotoxic agents from the cytoplasm. A mathematical model of this drug efflux pump has been developed. Outward transport is modeled as a facilitated diffusion process. Since energy-dependent efflux of cytotoxic agents requires that ATP also bind to p170, the model includes a dynamic calculation for efflux rate which considers Michaelis-Menten kinetics for both the substrate agent and ATP. The final system consists of one partial differential equation (PDE) for the facilitated diffusion of substrate agents out of the cell a 2×2 ordinary differential equation (ODE) system for the dynamic calculation of the ATP-ADP pool, and a dynamic algebraic calculation of the efflux rate given substrate levels at the interior cell membrane interface and ATP levels in the cell. A stability analysis of the ATP-ADP pool distribution and a simplistic closed form solution of the linearized PDE are included. Numerical simulations are also provided.
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    Bulletin of mathematical biology 54 (1992), S. 1039-1056 
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    Notes: Abstract Reentry in the heart is the repeated excitation of the same tissue by a single excitation wave; it is responsible for several types of cardiac arrhythmia. The simplest model which permits the phenomenon of reentry is two laterally coupled excitable fibers; in this paper we examine such a model in order to establish a basis for the understanding of the fundamental physical processes underlying the process of reentry. Two versions of the FitzHugh-Nagumo equations are used to develop complementary numerical and analytical results for the coupled fiber model. On the basis of numerical studies, regions of qualitatively different behaviour are mapped in the parameter space of excitation threshold and coupling strength between the fibers, and the effect of the rate of recovery is explored. Some of these regions are also obtained analytically, in good agreement with the numerical results. Finally, the results are discussed in the light of recent work on the role of the anisotropy of cardiac tissue in the initiation of reentrant activity in the heart.
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    Bulletin of mathematical biology 54 (1992), S. 1069-1081 
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    Notes: Abstract A sigmoid curve with three fitting parameters is proposed as a descriptive model for the spatial velocity field in one-dimensional growth of plant organs. Analytic expressions are derived for the relative elemental growth (REG) rate, the position and value of the REG rate maximum, the length of the growth zone, the inverse of the growth trajectory and cell length in the “elongation only” zone. The expressions are fit to published data to characterize the effects of environmental variation on growth of monocotyledonous roots. The simple expressions for growth may prove useful in mechanistic models. The fitted curves summarize more than a decade of observations and thus provide a challenge to theorists.
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    Bulletin of mathematical biology 60 (1998), S. 195-196 
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    Bulletin of mathematical biology 60 (1998), S. 101-129 
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    Notes: Abstract Due to the increasing importance of the extracellular matrix in many biological problems, in this paper we develop a model for fibroblast and collagen orientation with the ultimate objective of understanding how fibroblasts form and remodel the extracellular matrix, in particular its collagen component. The model uses integrodifferential equations to describe the interaction between the cells and fibers at a point in space with various orientations. The equations are studied both analytically and numerically to discover different types of solutions and their behavior. In particular we examine solutions where all the fibroblasts and collagen have discrete orientations, a localized continuum of orientations and a continuous distribution of orientations with several maxima. The effect of altering the parameters in the system is explored, including the angular diffusion coefficient for the fibroblasts, as well as the strength and range of the interaction between fibroblasts and collagen. We find the initial conditions and the range of influence between the collagen and the fibroblasts are the two factors which determine the behavior of the solutions. The implications of this for wound healing and cancer are discussed including the conclusion that the major factor in determining the degree of scarring is the initial deposition of collagen.
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    Bulletin of mathematical biology 60 (1998), S. 215-230 
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    Notes: Abstract This paper considers the time to extinction for a stochastic epidemic model of SEIR form without replacement of susceptibles. It first shows how previous rigorous results can be heuristically explained in terms of the more transparent dynamics of an approximating deterministic system. The model is then extended to include a host population structured into patches, with weak nearest-neighbour mixing of infection. It is shown, by considering the approximating deterministic system, that the expected time to extinction in a population of n + 1 patches each of size N is of the form a log N + bn, provided that N 〉 N c where N c is a critical patch size below which transits are unlikely to occur. This corresponds to the simple decomposition of the time of an epidemic into the time it takes to spread through one patch plus the time it takes to transit to each of n successive patches. Expressions for this threshold and the coefficients of the time to extinction are given in terms of the transmission parameters of infection and the coupling strength between patches. These expressions are compared with numerical results using parameters relevant to a study of phocine distemper virus in North Sea seals, and the agreement is found to be good for large and small N. In the region when N ≈ N c , where transits may or may not occur, interesting transitional behaviour is seen, leading to a non-monotonicity of the extinction time as a function of N.
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    Bulletin of mathematical biology 60 (1998), S. 409-415 
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    Bulletin of mathematical biology 60 (1998), S. 355-372 
    ISSN: 1522-9602
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    Notes: Abstract When directly transmitted infectious diseases are modeled assuming an everlasting induced immunity (and constant contact rate), there are well-established formulas to deal with, which is not true if we include the loss of induced immunity. In general, the immunity induced by the disease is everlasting. We propose a model considering the loss of immunity and present methods for the estimation of two epidemiological parameters: the force of infection and the basic reproduction ratio. We also analyze the effects of the loss of immunity on these parameters. Based on these results, we conclude that reinfection can play an important role in highly vaccinated populations.
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    Bulletin of mathematical biology 60 (1998), S. 449-475 
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    Notes: Abstract We studied mathematical models for the length distributions of actin filaments under the effects of polymerization/depolymerization, and fragmentation. In this paper, we emphasize the effects of these two processes acting alone. In this case, simple discrete and continuous models can be derived and solved explicitly (in several special cases), making the problem interesting from a modeling and pedagogical point of view. In a companion paper (Ermentrout and Edelstein-Keshet, 1998, Bull. Math. Biol. 60, 477–503) we investigate what happens when the processes act together, with particular attention to fragmentation by gelsolin, and with a greater level of biological detail.
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    Bulletin of mathematical biology 60 (1998), S. 197-213 
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    Notes: Abstract A possible experimental design for combination experiments is to compare the doseresponse curve of a single agent with the corresponding curve of the same agent using either a fixed amount of a second one or a fixed dose ratio. No interaction is then often defined by a parallel shift of these curves. We have performed a systematic study for various types of doseresponse relations both for the dose-additivity (Loewe additivity) and for the independence (Bliss independence) criteria for defining zero interaction. Parallelism between doseresponse curves of a single agent and those of the same agent in the presence of a fixed amount of another one is found for the Loewe-additivity criterion for linear doseresponse relations. For nonlinear relations, one has to differentiate between effect parallelism (parallel shift on the effect scale) and dose parallelism (parallel shift on the dose scale). In the case of Loewe additivity, zero-interaction dose parallelism is found for power, Weibull, median-effect and logistic doseresponse relations, given that special parameter relationships are fulfilled. The mechanistic model of competitive interaction exhibits dose parallelism but not effect parallelism for Loewe additivity. Bliss independence and Loewe additivity lead to identical results for exponential doseresponse curves. This is the only case for which dose parallelism was found for Bliss independence. Parallelism between single-agent doseresponse relations and Loewe additivity mixture relations is found for examples with a fixed doseratio design. However, this is again not a general property of the design adopted but holds only if special conditions are fulfilled. The comparison of combination doseresponse curves with single-agent relations has to be performed taking into account both potency and shape parameters. The results of this analysis lead to the conclusion that parallelism between zero interaction combination and single-agent doseresponse relations is found only for special cases and cannot be used as a general criterion for defining zero-interaction in combined-action assessment even if the correct potency shift is taken into account.
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    Bulletin of mathematical biology 60 (1998), S. 1-26 
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    Notes: Abstract Many models have been proposed for spatial pattern formation in embryology and analyzed for the standard case of zero-flux boundary conditions. However, relatively little attention has been paid to the role of boundary conditions on the form of the final pattern. Here we investigate, numerically, the effect of nonstandard boundary conditions on a model pattern generator, which we choose to be of a cell-chemotactic type. We specifically focus on the role of boundary conditions and the effects of scale and aspect ratio, and study the spatiotemporal dynamics of pattern formation. We illustrate the properties of the model by application to the spatiotemporal sequence of skeletal development.
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    Bulletin of mathematical biology 60 (1998), S. 79-100 
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    Notes: Abstract A model, based on the principles of continuum mechanics, is presented for the analysis of cell-velocity fields within wool follicles. The model requires specification of three follicle characteristics in the form of spatially varying fields: viscosity, cell density and cell production rate. The viscosity is introduced as an attempt to model both complex intercellular interactions and individual cell deformation as the cells move. It is demonstrated that the distribution of cell production is more important than axial variation in viscosity in determining the overall flow pattern.
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    Bulletin of mathematical biology 60 (1998), S. 131-150 
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    Notes: Abstract A microbial trichome extracts nutrients from its immediate surroundings. It may also oxidize electron donors, reduce electron acceptors, and exude the ‘waste’ products of endogenous redox metabolism. Finally, it may effect light harvesting. These exchange fluxes are summed up in a generic model, which covers photoautotrophs as well as chemoheterotrophs. The focus is on endogenous metabolism and the cellular homeostasis of both reducing and phosphorylating equivalents. A novel result is the formulation of four ‘rules’, akin to the Pasteur effect, which govern the compatibility of endogenous metabolism with various assimilatory processes.
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    Bulletin of mathematical biology 60 (1998), S. 49-65 
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    Notes: Abstract In this paper we present a deterministic, discrete-time model for a two-patch predator-prey metapopulation. We study optimal harvesting for the metapopulation using dynamic programming. Some rules are established as generalizations of rules for a single-species metapopulation harvesting theory. We also establish rules to harvest relatively more (or less) vulnerable prey subpopulations and more (or less) efficient predator subpopulations.
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    Bulletin of mathematical biology 60 (1998), S. 919-935 
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    Notes: Abstract To analyze signals measured from human blood flow in the time-frequency domain, we used the wavelet transform which gives good time resolution for high-frequency components and good frequency resolution for low-frequency components. Five characteristic frequency peaks, corresponding to five almost periodic rhythmic activities, were found on the time scale of minutes. These oscillations were characterized by time and spatial invariant measures. The potential of this approach in studying the blood-flow dynamics was illustrated by revealing differences between the groups of control subjects and athletes.
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    Bulletin of mathematical biology 60 (1998), S. 997-998 
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    Bulletin of mathematical biology 60 (1998), S. 1167-1200 
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    Notes: Abstract The interaction of a pair of weakly coupled biological bursters is examined. Bursting refers to oscillations in which an observable slowly alternates between phases of relative quiescence and rapid oscillatory behavior. The motivation for this work is to understand the role of electrical coupling in promoting the synchronization of bursting electrical activity (BEA) observed in the β-cells of the islet of Langerhans, which secrete insulin in response to glucose. By studying the coupled fast subsystem of a model of BEA, we focus on the interaction that occurs during the rapid oscillatory phase. Coupling is weak, diffusive and non-scalar. In addition, non-identical oscillators are permitted. Using perturbation methods with the assumption that the uncoupled oscillators are near a Hopf bifurcation, a reduced system of equations is obtained. A detailed bifurcation study of this reduced system reveals a variety of patterns but suggests that asymmetrically phase-locked solutions are the most typical. Finally, the results are applied to the unreduced full bursting system and used to predict the burst pattern for a pair of cells with a given coupling strength and degree of heterogeneity.
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    Bulletin of mathematical biology 60 (1998), S. 1017-1037 
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    Notes: Abstract Hemodynamic forces affect endothelial cell morphology and function. In particular, circumferential cyclic stretch of blood vessels, due to pressure changes during the cardiac cycle, is known to affect the endothelial cell shape, mediating the alignment of the cells in the direction perpendicular to stretch. This change in cell shape proceeds a drastic reorganization at the internal level. The cellular scaffolding, mainly composed of actin filaments, reorganize in the direction which later becomes the cell’s long axis. How this external mechanical stimulus is ’sensed’ and transduced into the cell is still unknown. Here, we develop a mathematical model depicting the dynamics of actin filaments, and the influence of the cyclic stretch of the substratum based on the experimental evidence that external stimuli may be transduced inside the cell via transmembrane proteins which are coupled with actin filaments on the cytoplasmic side. Based on this view, we investigate two approaches describing the formulation of the transduction mechanisms involving the coupling between filaments and the membrane proteins. As a result, we find that the mechanical stimulus could cause the experimentally observed reorganization of the entire cytoskeleton simply by altering the dynamics of the filaments connected with the integral membrane proteins, as described in our model. Comparison of our results with previous studies of cytoskeletal dynamics reveals that the cytoskeleton, which, in the absence of the effect of stretch would maintain its isotropic distribution, slowly aligns with the precise direction set by the external stimulus. It is found that even a feeble stimulus, coupled with a strong internal dynamics, is sufficient to align actin filaments perpendicular to the direction of stretch.
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    Bulletin of mathematical biology 60 (1998), S. 1149-1166 
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    Notes: Abstract We study a general predator—prey system in a spatially heterogeneous environment. The predation process, which occurs on a behavioural time-scale, is much faster than the other processes (reproduction, natural mortality and migrations) occurring on the population dynamics time-scale. We show that, taking account of this difference in time-scales, and assuming that the prey have a refuge, the dynamics of the system on a slow time-scale become donor-controlled. Even though predators may control the prey density locally and on a behavioural fast time-scale, nevertheless, both globally and on a slow time-scale, the prey dynamics are independent of predator density: the presence of predators generates a constant prey mortality. In other words, in heterogeneous environments, the prey population dynamics depend in a switch-like manner on the presence or absence of predators, not on their actual density.
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    The journal of Fourier analysis and applications 4 (1998), S. 283-297 
    ISSN: 1531-5851
    Keywords: Primary 42B25 ; 30D10 ; Secondary 26A16 ; 46B45 ; 47B10 ; 47B35 ; Mean oscillation ; Paley-Wiener space ; Besov spaces ; wavelets ; commutators ; Hankel operators ; Schatten-von Neumann ideals
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    Notes: Abstract The oscillatory behavior of functions with compactly supported Fourier transform is characterized in a quantified way using various function spaces. In particular, the results in this article show that the oscillations of a function at large scale are comparable to the oscillations of its samples on an appropriate discrete set of points. Several open questions about spaces of sequences are answered and applications in the study of commutator operators on the Paley-Wiener space are shown.
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    The journal of Fourier analysis and applications 4 (1998), S. 329-340 
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    Keywords: 42C15 ; 46E35 ; Wavelets ; function spaces ; fractals
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    Notes: Abstract Wavelets on self-similar fractals are introduced. It is shown that for certain totally disconnected fractals, function spaces may be characterized by means of the magnitude of the wavelet coefficients of the functions.
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    The journal of Fourier analysis and applications 4 (1998), S. 357-375 
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    Keywords: 42C15 ; 94A12 ; wavelets ; interpolation ; orthogonal expansions
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    Notes: Abstract Gibbs' phenomenon occurs for most orthogonal wavelet expansions. It is also shown to occur with many wavelet interpolating series, and a characterization is given. By introducing modifications in such a series, it can be avoided. However, some series that exhibit Gibbs' phenomenon for orthogonal series do not for the associated sampling series.
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    Circuits, systems and signal processing 11 (1992), S. 115-136 
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    Notes: Abstract By considering all orderings of the input samples, which are discrete-time continuous-valued, it is shown here that a weighted median (WM) filter of spanN can be specified unambiguously by 2N−1 consistent linear inequalities relating the weights. This specification is identical to that of a self-dual threshold function with the same weights. It is also shown that WM filters with symmetric weights can be specified by ternary threshold functions. Based on these inequalities, properties of WM filters which can be used to check equivalence of some WM filters are derived.
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    Circuits, systems and signal processing 11 (1992), S. 137-151 
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    Notes: Abstract Because binary mathematical morphology permits fast local neighborhood operations by flash conversion, it is used extensively in high-speed pattern-recognition computer systems. Further, since anyN-dimensional integer function may be represented by an (N + 1)-dimensional binary (bilevel) function, ordinary two-dimensional graylevel images become three-dimensional binary images. Thus these images may be processed by high-speed flash-conversion computers assuming that a sufficiently compact three-dimensional kernel can be devised. The tetradekahedron of the face-centered-cubic tessellation forms a perfect kernel in three-dimensions. Its neighborhood is compact. It has total symmetry with all 12 neighbors equidistant from the central element. Using this kernel a variety of useful three-dimensional morphological operations may be performed for target track detection, shaded graphics, data clustering, automated focusing, and spatial filtering.
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    Circuits, systems and signal processing 11 (1992), S. 153-169 
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    Notes: Abstract Two techniques for image restoration are compared in this paper. One is a technique based on the theory of optimal adaptive stack filtering; the other is a recently developed vector detection approach to image restoration. The primary difference between these two techniques is that the optimal detection technique exploits multilevela priori information, while the stack filter uses only single level zero crossing information. The design constraints for stack filters and vector detection are similar. Both approaches rely on the existence of a training sequence for the image source in order to obtain optimal processing. Adaptive stack filters do, however, require a training set of the noise while the optimal detection approach only needs a multivariate parametric representation. The image-restoration performance of these two methods is compared in a signal dependent noise environment characterizing imaging systems with speckle, film-grain, and Poisson shot noise. Comparisons are made using the mean absolute error measure as well as a subjective measure.
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    Circuits, systems and signal processing 11 (1992), S. 325-352 
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    Notes: Abstract The stability of digital ladder filters close in form, via the lossless discrete integrator (LDI) transformation, to doubly terminatedLC Cauer ladder low-pass filters is studied. The LDI transformation does not necessarily map stable analogue into stable digital filters. Necessary and sufficient conditions for these digital filter to be lossless and for a corresponding doubly terminated filter to be stable are given. LDIs are often used in the design of switched capacitor (SC) filters. For this case we provide a threshold sampling rate above which the SC LDI filter retains the stability of the analogue filter. In spite of the stability problem with the LDI mapping, it has been observed that when applied to simulate analogue filters the resulting filter is stable. It can now be argued that, in these cases, other factors in the determination of the sampling rate leads typically to a choice that is also sufficiently above the threshold rate for stability. The theory described is also useful to derive more general digital filters and to perform the design of stable LDI filters exclusively in the Z-plane without reference to analogue prototypes.
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    Circuits, systems and signal processing 11 (1992), S. 285-307 
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    Notes: Abstract In this paper we describe a family of operators for constructing nontrivial left and right coprime factorizations under rather weak conditions for a large class of nonlinear feedback control systems that has a stabilizable or unstabilizable plant, using a common criterion of input-output stability. The proposed sufficiency and construction method are based on a generalization of the nonlinear Lipschitz operator theory formulated by us for such systems. This class of generalized nonlinear Lipschitz operators constitutes a very large family (an infinite-dimensional Banach space) of bounded nonlinear operators that describe (part of) the underlying systems. One of the main difficulties in constructing coprine factorizations for nonlinear feedback systems has been in taking care of the nonlinear composite and inverse operators that appear in the closed-loop configuration such that the overall feedback system is well defined in the sense of stability, causality, and uniqueness of the internal signals and such that the coprime factorizations can be achieved. In this paper we show how these difficult issues can be handled nicely under our framework of generalized nonlinear Lipschitz operator theory, at least for a very large class of nonlinear control systems. We give a simple illustrative example to show how these coprime factorizations can actually be characterized and constructed to yield explicit closed-form solutions.
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    Circuits, systems and signal processing 11 (1992), S. 387-398 
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    Notes: Abstract In this paper we study the problem of designing a neural network that gives the correct binary representation of a given real number. Previously this problem has been studied by Tank and Hopfield. The network proposed by them exhibits “hysteresis” in the sense that the current vector of the network sometimes converges towards a binary vector that isnot the correct binary representation of the input current. The reason for this is that the network proposed by them has multiple asymptotically stable equilibria. In the present paper, we propose another neural network which has the property that it hasa single, globally attractive equilibrium for almost all values of the input current. Hence, irrespective of the initial conditions of the network, the current vector converges towards the correct binary representation of the input current.
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    Circuits, systems and signal processing 11 (1992), S. 421-430 
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    Notes: Abstract Concepts of observability and strong observability for singular systems are introduced and characterized geometrically in terms of the system matrices without using the Weierstrass decomposition. Duality relations between observability and controllability and that between reachability and strong observability are established. A canonical form for the action of the output injection group on the set of observable systems is presented.
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    Circuits, systems and signal processing 11 (1992), S. 455-492 
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    Notes: Abstract Mathematical morphology is becoming increasingly important in industrial vision applications for object recognition and defect inspection. In this paper we define a new function based on mathematical morphology, which we named the Rotationally Invariant Pecstrum (RIP). The RIP is proven to be invariant under rotation regardless of the shape of the structuring element. This paper also discusses how to use the RIP as an object descriptor and studies the effect of using different structuring elements on recognizing objects of different shapes.
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    Circuits, systems and signal processing 11 (1992), S. 493-508 
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    Notes: Abstract This work presents close-form formulas for typical two-dimensional bandselect linear-phase FIR filters (e.g., band-pass, high-pass, and band-stop filters) optimal in the least-squares sense. Cases of both circular and elliptical symmetry are considered. The formulas refer to the coefficients of the frequency sampling form of the frequency response. Therefore they can either be directly used for filter implementation, if the frequency sampling structure is adopted, or used to obtain the impulse response coefficients via an inverse FFT.
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    Circuits, systems and signal processing 17 (1998), S. 85-102 
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    Notes: Abstract In this paper, we present a hybrid space-time-filtered Viterbi receiver using multiple antennas for co-channel interference (CCI) reduction and intersymbol interference (ISI) equalization in a slow Rayleigh fading channel. In this approach, a space-time filter is first applied at the antenna outputs to maximize the signal-to-interference-plus-noise ratio (SINR), and the scalar output is then sent to a Viterbi equalizer. We propose a closed-form solution to jointly determine the weight vector for the space-time filter and the channel vector for the Viterbi equalizer. We also examine the need for a whitening filter prior to the Viterbi equalizer and show that it only marginally improves the performance. Simulation results are provided to validate our approach and to compare the performance of our receiver with that of different existing receivers.
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    Circuits, systems and signal processing 17 (1998), S. i 
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    Circuits, systems and signal processing 17 (1998), S. 123-136 
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    Notes: Abstract Prosthetic heart valves have been responsible for extending the life spans and improving the quality of life of many people with serious heart conditions. Even though the heart valves are extremely reliable, eventually they are susceptible to the long-term fatigue and structural failure effects expected for mechanical devices operating over long periods of time. In [2] a classification procedure was developed using spectral features obtained from acoustic signals to determine the condition of the prosthetic heart valve. Although this classification procedure has produced very encouraging results, this method still lacks a fundamental physical description of the sounds produced by the valve during normal operation. In order to obtain a better understanding of the valve acoustic response, we have performed a set of anechoic tests. In this paper, we describe the anechoic experiment and also present limited transient response results. This transient information will eventually be used to identify and improve the features used to classify the valve condition.
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    Circuits, systems and signal processing 17 (1998), S. 195-218 
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    Notes: Abstract In this two-part study we present a new design methodology for neural classifiers. The design procedure utilizes a multiclass vector quantization (MVQ) algorithm for information extraction from the training set. The extracted information suffices to specify the hidden layer in a canonical neural network architecture. The extracted information also leads to the specification of neuron inhibition rules and subsequently the design of the hidden layer-to-output map. In Part I of the study we focus attention on the MVQ algorithm and how it is used to extract information from a training set. The extracted information is referred to as thecodebook. The codebook is used to directly specify the hidden layer. This specification can take the form of a perceptron layer, a radial basis layer, or a heterogeneous layer involving a mixture of neuron types. These and otherh-layer specifications are determined directly from the same extracted information. The MVQ codebook also suffices to scale the activation function of each neuron. In Part II we consider the nonsimplistic hidden layer-to-output map design. We note that the MVQ algorithm, as it extracts information, decomposes the design set into disjoint neighborhoods. For each neighborhood we identify subsets of the hidden layer neurons, which are significant sensors for the neighborhood. For each such subset we construct an output map. Inhibition rules are established to ensure that the proper output map is activated. In benchmark simulations the overall design exhibits excellent performance, to the extent that we are hard pressed to identify bounds on performance, if any.
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    Circuits, systems and signal processing 17 (1998), S. 361-389 
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    Notes: Abstract A transform domain image tagging orwatermarking method that survives image cropping (and, hence, is “holographic”) was proposed at Bell Labs in September 1994. This report analyzed in detail the various properties of this method and introduces an optimal procedure for watermark recovery.
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    Circuits, systems and signal processing 17 (1998), S. 483-493 
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    Notes: Abstract An algorithm for the exact computation of the frequency responses of linear interval systems is obtained. For the computation a sectoring stage is added to an elimination algorithm to eliminate interior curves. It is shown that the intersection of a ray and the frequency response set is an empty set or a line segment whose endpoints are extrema of the functions defined. Required mathematical analysis tools for the development of the sectoring algorithm and an illustrative example are provided.
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    Circuits, systems and signal processing 17 (1998), S. 559-574 
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    Notes: Abstract The geometric theory of the domain of an ordered pair (F, G) of matrices or the geometry associated with matrix pencils provides a unifying framework for the study of algebraic, dynamic and feedback properties of linear singular systems. The key concepts and tools of the geometry are the notions of the (F, G)-, (G, F)-invariance and a set of subspace sequences. In this paper, an alternative characterization of these sequences is given based on the properties of the partitioned null spaces of appropriate sequences of Toeplitz matrices defined by the (F, G) pair. The results provide a simple procedure for the computation of the limit spaces of these sequences and clearly cover corresponding problems of the singular, implicit systems theory.
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    Circuits, systems and signal processing 17 (1998), S. 667-682 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract This paper presents a new concept of narrowband and broadband active noise compression (ANCom) systems which improves the conventional active noise equalization (ANE) technique to meet some practical requirements. By using a variable equalization coefficient, the narrowband ANCom system can automatically switch among the four different operating modes of narrowband ANE, according to the primary noise power. As a result, it can “compress” the narrowband noise into a desired power range when the primary noise power varies drastically. Compared to a conventional broadband ANE system, the novel broadband ANCom system not only has the ability to shape the residual noise power spectrum, but can also compress the residual noise power into a predetermined dynamic range as the narrowband AN-Com does. Theoretical analyses are conducted for both the narrowband ANCom and broadband ANCom systems. Simulation results show that the proposed algorithms work well in both static and dynamic situations.
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    Circuits, systems and signal processing 17 (1998), S. 703-708 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract The cornerstone of the theory of discrete-space single-input single-output linear systems is the idea that every such system has an input-output mapH that can be represented by a convolution or the familiar generalization of a convolution. This thinking involves an oversight, which, for the case of bounded inputs mapped continuously into bounded outputs, was recently corrected by adding an additional term to the representation. Here we give a more general result that addresses an important larger family of inputs.
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    Circuits, systems and signal processing 17 (1998), S. 737-755 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract In this paper the problem of robust stabilizing a linear, time-invariant singular system is studied. The characterization is given in terms ofH ∞-bounded perturbations to the numerator and denominator factors of its normalized left coprime factorization. An optimal stability margin is provided in terms of the definition of the Hankel norm of a singular system. The Hankel norm is computed using two generalized Lyapunov equations.
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    Circuits, systems and signal processing 17 (1998), S. 1-27 
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    Notes: Abstract A novel computationally efficient realization of sharp linear-phase finite impulse response (FIR) bandstop filters is proposed. The synthesis scheme for the bandstop filters is derived from variations of the frequency-response-masking technique. Five realization structures are presented in this paper for the synthesis of five different classes of bandstop filters. Approximate expressions for the optimal value of the impulse response up-sampling ratio (M) and the corresponding number of multipliers are derived.
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    Circuits, systems and signal processing 17 (1998), S. 29-49 
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    Notes: Abstract Estimating the covariance sequence of a wide-sense stationary process is of fundamental importance in digital signal processing (DSP). A new method, which makes use of Fourier inversion of the Capon spectral estimates and is referred to as theCapon method, is presented in this paper. It is shown that the Capon power spectral density (PSD) estimator yields an equivalent autoregressive (AR) or autoregressive moving-average (ARMA) process; hence, theexact covariance sequence corresponsing to the Capon spectrum can be computed in a rather convenient way. Also, without much accuracy loss, the computation can be significantly reduced via an approximate Capon method that utilizes the fast Fourier transform (FFT). Using a variety of ARMA signals, we show that Capon covariance estimates are generally better than standard sample covariance estimates and can be used to improve performances in DSP applications that are critically dependent on the accuracy of the covariance sequence estimates.
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    Circuits, systems and signal processing 17 (1998), S. 51-68 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract Results in the study of signal processing based on the use of parameter structural modeling (PSM) are presented. First, we introduce a special form of time-series modeling based on signal-dependent building blocks. Such modeling is used in the design of a nestedform transversal structure, known as a composite filter, based on a shift-invariant finite impulse resonse (FIR) as well as infinite impulse response (IIR) building blocks. The newly proposed composite PSM model (CPSM) possesses a unique feature, namely, its ability to suppress one signal of a given structure, while at the same time being ideally transparent to another one. The intrinsic property of this proposed CPSM is its enhanced insensitivity with respect to noise as well as its ability to fast track, in contrast to the commonly used linear line-enhancer based on conventional autoregressive moving average (ARMA), thus leading to a more practically sound processing of short-duration signals. It is shown that the proposed time-series modeling based on CPSM can be effectively applied towards the separation of superimposed signals of heavily overlapping spectra. Next, the parameter-invariant nonlinear structural signal representation based on shift-invariant CPSM is presented. The use of this model in the design of annihilation operators (AO) is described, and composite parameter-free structural modeling (CPFSM) is developed. Based on this model, two canonical forms of the parameter-invariant null filters (PINF) are presented, and their use in the suppression of a given class of signals, independently of the values of theira priori unknown parameters, is illustrated. The paper also presents some simulation examples illustrating the application of the proposed CPSM and CPFSM in solving problems of detection and parameter estimation in the presence of highly non-Gaussian, mainly signal-like interferences.
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    Circuits, systems and signal processing 17 (1998), S. 69-83 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract This work is motivated by the need forFaithful digital simulation of cellular neural networks (CNNs) that maintains most of their qualitative properties of stability and convergence. An interconnection of nonlinear digital filters mimicking behaviors of the analog CNNs is proposed, and the main properties are studied in detail. The discrete model obtained is proven to have the same convergence properties as the original analog network. The key to this development is the use of anAppropriate discretization scheme. Our discrete approximation to the nonlinear state-space representation of cellular neural networks is such that the Lyapunov function used to show convergence in analog cellular neural networks is still a Lyapunov function (when appropriately discretized) for our nonlinear digital filter network. This is in contrast to other digital simulations of CNNs, which have not been proven to preserve the convergence properties. The network of nonlinear digital filters so introduced thus adds another item to the catalog of digital filters obtained viaappropriate discretization of analog circuits, e.g., wave digital filters, orthogonal filters, and certain other of their more recently studied nonlinear counterparts.
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    Circuits, systems and signal processing 17 (1998), S. 117-122 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract In this paper, the problem of blind channel identification and equalization is reviewed, and some recent results are presented.
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    Circuits, systems and signal processing 17 (1998), S. 137-164 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract This paper presents in summarizing form a description of halfband filters and the related symmetrical Hilbert transformers. It starts with the two complemetary relations by which halfband filters are defined and the consequences for their impulse responses. The idealized versions of the frequency responses of halfband lowpasses and Hilbert transformers are introduced, and the related tolerance schemes that realized systems must satisfy are described. Using their frequency responses, the transformation of one filter type into the other is presented in general form. The design of finite impulse response (FIR)-halfband filters and their relation to corresponding Hilbert transformers are recalled, using maximally flat and Chebyshev approximations as examples. It is shown that the relation between both types of systems can be used for the infinite impulse response (IIR) case as well. The design of IIR-halfband filters is presented for systems with approximately linear phase and for those with minimum phase again for maximally flat and Chebyshev approximations. The design methods are partly new. The general procedure for the transformation into Hilbert transformers yields noncausal solutions, one of which is already known from the literature. By modifying this operation, phase-splitting systems are obtained, one of them related to corresponding continuous ones, discussed in papers published around 1950. Another system with approximately linear phase corresponds to a paper presented in 1987. Finally, the coupled form of these phase splitting allpasses is found to be a Hilbert transformer with precise phase difference, but with deviations of the magnitudes of the frequency responses.
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    Circuits, systems and signal processing 17 (1998), S. 165-193 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract The matched field processing (MFP) localization performance of very low frequency (VLF) arrays operated in the deep ocean basins appears to be limited more by uncertainty in the sound velocity profile (SVP) than by low signal-to-noise ratio (SNR). We present a new robust variation of MFP designed to be less sensitive to velocity error in weakly inhomogeneous environments. We analyze the computational requirements of this and other MFP algorithms. When either the search volume is large of the acoustic array is large, computational efficiency is an issue. We present an efficient MFP implementation for the conventional MFP algorithm and our robust algorithm. We show that parallel implementation of these algorithms may allow real-time performance.
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    Circuits, systems and signal processing 17 (1998), S. 219-241 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract By applying results from homotopy theory, new conditions are obtained for the existence and uniqueness of an equilibrium for a class of continuous-time feedback neural networks which contains the Hopfield model as a special case. Next, new criteria are established for the global asymptotic stability of the unique equilibrium of this class of neural networks by utilizing Lur'e-type Lyapunov functions and the stability theory for systems of differential inequalities. Several practical stability testing conditions are given. As a special case, criteria are derived for the global asymptotic stability of Hopfield neural networks. This is followed by a robustness analysis of the class of neural networks considered. The results obtained are then applied to an optimization problem.
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    Circuits, systems and signal processing 17 (1998), S. 271-287 
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    Notes: Abstract Functional artificial neural networks (FANNs) are artificial neural networks (ANNs) in which the synaptic weights are “functions” rather than numbers. Thus the signals in such networks are analog, and the action of a synapse on a signal passing through it takes place in the form of a scalar product inL 2 between the functional weight and the signal. In this paper, four classes of FANNs are introduced. They result from the solution of a nonparametric optimization problem in a generalized Fock space (GFS) of abstract Volterra series under interpolating or smoothing input-output training data constraints. Two of these classes of FANNs correspond to the interpolating case and are represented by what we call the (two-layer)optimal interpolating (OI) FANN and theoptimal multilayer neural interpolating (OMNI) FANN. The remaining two classes correspond to the smoothing case. We name their representations as the (two-layer)optimal smoothing (OS) FANN and theoptimal smoothing multilayer artificial neural (OSMAN) FANN. In addition to providing the background and the derivation of these FANNs, this paper presents a novel approach to their implementation. This approach does away with the computationally cumbersome use of functional weights. Instead, the effect of these weights is provided by linear time-invariant differential equation models of which those weights are impulse responses. These are implemented by a linear filter bank. This approach thus leads to simple and meaningful causal realizations of FANNs which we call Dynamical FANNs or simply D-FANNs.
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    Circuits, systems and signal processing 17 (1998), S. 243-270 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract In this paper, we study the problem of maximizing an objective function over the discrete set {−1, 1} n using a neural network. It is now known that a binary (two-state) Hopfield network can take, in the worst case, an exponential number of time steps to find even a local maximum of the objective function. In this paper, we carry this argument further by studying theradius of attraction of the global maxima of the objective function. If a binary neural network is used, in general there is no guarantee that a global maximum has a nonzero radius of attraction. In other words, even if the optimization process is started off with the neural network in an initial state that isadjacent to the global maximum, the resulting trajectory of the network may not converge to the nearby maximum, but may instead go off to another maximum. At the same time, another set of recent results shows that, if ananalog neural network is used to optimize the same objective function, thenevery local maximum of the objective function has a nontrivial domain of attraction, and conversely, the only equilibria that are attractive are the local maxima of the objective function. This raises the question as to whether analog neural networks offer some advantages over binary neural networks for optimizing the same objective function. As a motivation for this line of inquiry, we study the problem of decoding an algebraic block code using a neural network. It is shown that the binary neural network implementation has the undesirable property thatall the global maxima of the objective function have azero radius of attraction. In contrast, if an analog neural network is used to maximize exactly the same objective function, the region of attraction of each maximum contains not only the associated “orthant” of the state space, but also some points not in this orthant. In other words, the analog implementation exhibits the desired tolerance to transmission errors, whereas the binary neural network does not have this property. With this motivation, two open questions are posed that provide a program of research for studying the possible superiority of analog neural networks over binary neural networks.
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    Circuits, systems and signal processing 17 (1998), S. 289-304 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract We present a new statistical technique for average power estimation in sequential circuits. Because of the feedback loops, power dissipations of sequential circuits in consecutive clock cycles are temporally correlated. The existence of data correlation makes it unsuitable to apply conventional techniques to average power inference, because the sample variance is no longer a maximum likelihood estimator. The convergence criterion derived from the biased variance estimation will be overly optimistic, causing power simulation to stop prematurely at a lower-than-specified estimation accuracy. To overcome this problem, we propose a systematic approach for modeling the power dissipation behavior of sequential circuits as an autoregressive random process. An accurate process variance can be obtained by the model parameters, which enables the derivation of a robust confidence interval of the average power. The interval is checked for convergence against a user-specified accuracy criterion. An iterative procedure is developed to invoke these steps repeatedly until the convergence specification is met. For a set of benchmark sequential circuits, this technique yields high accuracy and efficiency.
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    Circuits, systems and signal processing 17 (1998), S. 391-400 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract This paper presents a straightforward algebraic method for designing feedback loops in the frequency domain. The emphasis here is on control system design, but the technique is applicable to active filter design as well. The object is to produce a practical analog filter with a minimum of design effort. The algebraic solution to the design problem is presented, and several examples are explored.
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    Circuits, systems and signal processing 17 (1998), S. 471-481 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract This correspondence presents a RELAX (RELAXation-based) algorithm for angle, polarization, and waveform estimation of completely polarized narrowband electromagnetic plane waves arriving at a uniform linear co-centered orthogonal loop and dipole (COLD) array. We use numerical examples to demonstrate the performance of the RELAX algorithm for parameter estimation with the COLD array and compare it with the performance of the MODE (Method of Direction Estimation) algorithm. We show that this RELAX algorithm can outperform MODE and yet be computationally faster than MODE.
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    Circuits, systems and signal processing 17 (1998), S. 517-538 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract In this paper we present a number of image processing applications using coordinate logic filters, which execute coordinate logic operations among the pixels of the image. These filters are very efficient in various 1D, 2D, or higher-dimensional digital signal processing applications, such as noise removal, magnification, opening, closing, skeletonization, and coding, as well as in edge detection, feature extraction, and fractal modeling. In this paper we present some typical image processing applications using coordinate logic filters. The key issue in the coordinate logic analysis of images is the method of fast successive filtering and managing of the residues. The desired processing is achieved by executing only direct logic operations among the pixels of the given image. Coordinate logic filters can be easily and quickly implemented using logic circuits or cellular automata; this is their primary advantage.
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    Circuits, systems and signal processing 17 (1998), S. 591-611 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract This paper presents a new method for the digital modeling of a continuous-time uncertain system and a new method for the digital redesign of a sampled-data uncertain system. The system matrices characterizing the state-space representation of the original uncertain system are assumed to be interval matrices. The Chebyshev quadrature formula together with the interval arithmetic are used for the digital interval modeling, and a dual concept of digital interval modeling is utilized to discretize a predesigned cascaded analog controller for robust digital control of a continuous-time uncertain system. Using the newly developed digital interval models and digitally redesigned controllers, the resulting dynamic states of the digitally controlled sampled-data uncertain systemsare able to closely match those of the originally analogously controlled continuous-time uncertain systems for a relatively longer sampling period.
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  • 80
    ISSN: 1539-6924
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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    Risk analysis 18 (1998), S. 563-573 
    ISSN: 1539-6924
    Keywords: Risk assessment ; mourning doves ; hunting ; radionuclides ; heavy metals ; lead shot ; cesium
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Notes: Abstract Recreational and subsistence hunters and anglers consume a wide range of species, including birds, mammals, fish and shellfish, some of which represent significant exposure pathways for environmental toxic agents. This study focuses on the Department of Energy's (DOE's) Savannah River Site (SRS), a former nuclear weapons production facility in South Carolina. The potential risk of contaminant intake from consuming mourning doves (Zenaida macroura), the most popular United States game bird, was examined under various risk scenarios. For all of these scenarios we used the mean tissue concentration of six metals (lead, mercury, cadmium, selenium, chromium, manganese) and radiocesium, in doves collected on and near SRS. We also estimated risk to a child consuming doves that had the maximum contaminant level. We used the cancer slope factor for radiocesium, the Environmental Protection Agencies Uptake/Biokinetic model for lead, and published reference doses for the other metals. As a result of our risk assessments we recommend management of water levels in contaminated reservoirs so that lake bed sediments are not exposed to use by gamebirds and other terrestrial wildlife. Particularly, measures should be taken to insure that the hunting public does not have access to such a site. Our data also indicate that doves on popular hunting areas are exposed to excess lead, suggesting that banning lead shot for doves, as has been done for waterfowl, is desirable.
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  • 82
    ISSN: 1539-6924
    Keywords: Exposure duration ; survey data ; longevity bias ; angler populations
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Notes: Abstract Exposure duration is an important component in determining long-term dose rates associated with exposure to environmental contaminants. Surveys of exposed populations collect information on individuals' past behaviors, including the durations of a behavior up to the time of the survey. This paper presents an empirical approach for determining the distribution of total durations that is consistent with the distribution past durations obtained from surveys. This approach is appropriate where the rates of beginning and ending a behavior are relatively constant over time. The approach allows the incorporation of information on the distribution of age in a population into the determination of the distribution of durations. The paper also explores the impact of “longevity” bias on survey data. A case study of the application of this approach to two angler populations is also provided. The results of the case study have characteristics similar to the results reported by Israeli and Nelson (Risk Anal. 12, 65–72 (1992)) from their analytical model of residential duration. Specifically, the average period of time for the total duration in the entire population is shorter than the average period of time reported for historical duration in the surveyed individuals.
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    ISSN: 1539-6924
    Keywords: Risk perceptions ; cultural theory ; psychometric paradigm
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Notes: Abstract This paper seeks to compare two frameworks which have been proposed to explain risk perceptions, namely, cultural theory and the psychometric paradigm. A structured questionnaire which incorporated elements from both approaches was administered to 129 residents of Norwich, England. The qualitative risk characteristics generated by the psychometric paradigm explained a far greater proportion of the variance in risk perceptions than cultural biases, though it should be borne in mind that the qualitative characteristics refer directly to risks whereas cultural biases are much more distant variables. Correlations between cultural biases and risk perceptions were very low, but the key point was that each cultural bias was associated with concern about distinct types of risks and that the pattern of responses was compatible with that predicted by cultural theory. The cultural approach also provided indicators for underlying beliefs regarding trust and the environment; beliefs which were consistent within each world view but divergent between them. An important drawback, however, was that the psychometric questionnaire could only allocate 32% of the respondents unequivocally to one of the four cultural types. The rest of the sample expressed several cultural biases simultaneously, or none at all. Cultural biases are therefore probably best interpreted as four extreme world views, and a mixture of qualitative and quantitative research methodologies would generate better insights into who might defend these views in what circumstances, whether there are only four mutually exclusive world views or not, and how these views are related to patterns of social solidarity, and judgments on institutional trust.
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    The Geneva risk and insurance review 17 (1992), S. 7-191 
    ISSN: 1554-9658
    Keywords: Risk ; Insurance Demand ; Deterministic Transformations ; Stochastic Dominance ; Expected Utility
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    Topics: Economics
    Notes: Abstract The consequences of a change in a random parameter are determined for a decision model with more than one source of randomness. The two cases of independent and stochastically dependent sources of risk are discussed. Four comparative static theorems are given. These state the effect of first degree stochastically dominant shifts or risk decreases for one random variable while the other random variable is held fixed. Deterministic transformations are used to represent random parameter changes. The results are presented in the context of the coinsurance demand model with a risky insurable asset and background risk.
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    The Geneva risk and insurance review 17 (1992), S. 21-33 
    ISSN: 1554-9658
    Keywords: Insurance Demand ; Multiple Sources of Risk ; Comparative Statics ; Increases in Risk
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    Topics: Economics
    Notes: Abstract In this paper we propose an answer to the following problem of comparative statics in models with multiple sources of risk: How a risk averse agent will change his coinsurance demand when the distribution of the insurable loss is shifted? To answer the question, we first comment on Jack Meyer's results and then we show how an alternate approach leads to more definitive comparative statics.
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    The Geneva risk and insurance review 17 (1992), S. 35-60 
    ISSN: 1554-9658
    Keywords: Ambiguity ; Pricing ; Actuaries ; Decision Processes
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    Topics: Economics
    Notes: Abstract This paper reports on the results of a questionnaire study of pricing decisions made by professional actuaries when the probabilities of a loss are either ambiguous or nonambiguous. Theoretical hypotheses derived from the expected utility model were compared with the implications of procedures described by practicing actuaries. Actuaries were asked to act as consultants to a computer manufacturer concerning the price of a warranty. The suggested prices were considerably higher when probabilities were ambiguous than when they were well-specified. These pricing decisions were consistent with the procedures described by actuaries but inconsistent with predictions from expected utility theory when the risks are perfectly correlated. Further insight into the actual decision process is provided by interviews with actuaries and an analysis of comments written on the questionnaire forms.
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    The Geneva risk and insurance review 17 (1992), S. 61-75 
    ISSN: 1554-9658
    Keywords: Saving ; Borrowing ; Increases in Risk Aversion ; Increases in Risk ; Multivariate NonExpected Utility Model
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    Topics: Economics
    Notes: Abstract We adopt the multivariate non-expected utility approach proposed by Yaari [1986] to provide a characterization of the comparative statics effects of greater risk aversion and of mean-preserving increases in risk on saving and borrowing in the presence of income and interest rate risk. We show that in Yaari's model, it is possible to extend the applicability of the Diamond and Stiglitz [1974] and Kihlstrom and Mirman [1974] (DSKM) single-crossing property to establish a relationship between greater risk aversion and saving (or borrowing) on the basis of the individual's ordinal preferences as long as the two risks are independent. We also demonstrate that the comparative statics effects of a joint mean-preserving increase in random income and interest rate on saving and borrowing can be determined by an extension of the DSKM single-crossing property.
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 37-43 
    ISSN: 1476-5535
    Keywords: Linear alkylbenzene sulfonate ; Biodegradation ; Plasmid ; Detergent ; Gene probe
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Linear alkylbenzene sulfonate (LAS) is a widely used anionic surfactant. Although approximately 1 million metric tons of LAS are produced annually, relatively little is known about the bacteria or the genetic factors that control LAS degradation in the environment. The objectives of this research were to: i) compare bacterial populations in wastewater and pristine pond systems; ii) determine the frequency of plasmids in bacteria from these sites; and iii) compare the frequency of DNA sequences coding for aromatic catabolism in isolates from these two sites. Plate counts indicated that exposure to wastewater resulted in higher levels of both heterotrophic bacteria and bacteria capable of growing on LAS containing medium (LAS/YEPG). In addition to higher numbers, a higher proportion of heterotrophs from the wastewater system were capable of growth on LAS/YEPG medium. Thus, the high levels of LAS in the wastewater system apparently selected fro organisms that were able to tolerate and/or degrade, it. Mineralization of14C-ring labelled LAS in any habitat related to the presence of organisms that grew on LAS/YEPG. Although may of these isolates could carry out primary degradation, no isolate, could mineralize14C-ring LAS in pure culture. A higher incidence of plasmids was found in bacteria from the wastewater pond and among bacteria that grew on LAS containing medium. However, the presence of plasmid, DNA did not necessarily confer the ability to degrade LAS nor was the ability to degrade LAS dependent on the presence of a plasmid. The incidence of selected genotypes for aromatic catabolism was similar among isolates on LAS/YEPG at both sites, suggesting that LAS ring degradation may be present in other populations or encoded by alternative sequences. In conclusion, LAS mineralization is mediated by a consortium and the evidence that initial attack of LAS is plasmid mediated is inconclusive.
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 103-107 
    ISSN: 1476-5535
    Keywords: Fatty acid bioconversion ; hydroxy octadecenoic acid
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    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Previously, we reported the discovery of a new compound, 7,10-dihydroxy-8(E)-octadecenoic acid (DOD) which was produced from oleic acid by a new bacterial isolate PR3 [6,7]. The reaction is unique in that it involves a hydroxylation at two positions and a rearrangement of the double bond of the substrate molecule. Now, we have isolated another compound from the reaction mixture determined by GC/MS to be 10-hydroxy-8-octadecenoic acid (HOD). NMR and IR data indicate that the unsaturation is probablycis. The optimum pH and temperature for the production of HOD by strain PR3 were 6.5 and 30°C, about the same as those for DOD. However, the amount of HOD detected remained small throughout an 48-h reaction period during which the amount of DOD increased sharply. At 48 h of reaction, the ratio between HOD∶DOD was 1∶10. HOD may be an intermediate in the biosynthesis of DOD from oleic acid.
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 109-113 
    ISSN: 1476-5535
    Keywords: Candida blankii ; Biomass ; d-Xylose ; l-Arabinose ; Acetate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary All fourCandida blankii isolates evaluated for growth in simulated bagasse hemicellulose hydrolysate utilized the sugars and acetic acid completely. The utilization ofd-xylose,l-arabinose and acetic acid were delayed by the presence ofd-glucose, but after glucose depletion the other carbon sources were utilized simultaneously. The maximum specific growth rate of 0.36 h−1 and cell yield of 0.47 g cells/g carbon source assimilate compared with published results obtained withC. utilis. C. blankii appeared superior toC. utilis for biomass production from hemicellulose hydrolysate in that it utilizedl-arabinose and was capable of growth at higher temperatures.
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  • 91
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 115-119 
    ISSN: 1476-5535
    Keywords: Mycolytic enzymes ; Trichoderma viride ; Protoplasts ; Cochliobolus lunatus ; Fermentation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Microorganism useful for the induction of enzymes lytic towards walls of filamentous fungusCochliobolus lunatus were studies. Production of specificTrichoderma viride mycolytic enzymes was studied in a laboratory fermentor. The product with high chitinase and relatively low protease activity gave better yields ofC. lunatus protoplasts than commercial Novozym 234.
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  • 92
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 121-125 
    ISSN: 1476-5535
    Keywords: Trichoderma viride ; Cellulase production ; Optimized production medium and parameters
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary A 25-l scale protocol is devised for the optimal secretion and recovery of fungal cellulase. Using a selected higher yieldingTrichoderma viride SMC strain, a protocol consisted of: a) an optimized production medium rich in microcrystalline cellulose (MCC), fortified with 1% (w/v) ammonium sulphate, 0.5% (w/v) soybean flour, 0.1% (v/v) Tween-80 and other trace nutrients; b) optimized physical parameters of production, such as an inoculum containing a homogeneous suspension of 6×107 conidia per 1,28±1°C, pH 4.0±0.5, 300±20 rpm, 11000±1000 l/h aeration, and 170–220 h duration; c) optimal recovery through a filter press (450 l/h rate of filtration) followed by precipitation with 2.5–3.0 volumes of acetone (15°C and basket centrifugation (27°C, 1700 rpm)); and d) vacuum drying (35°C, 4–6 h). This afforded 70% recovery of cellulase in the form of white fluffy powder containing 20000±2000 carboxy methyl cellulase and 1000±50 units filter paperase per g activities, with raw material cost of US$ 8–10 per million carboxy methyl cellulase units. During storage for 18 months at 4°C, ambient temperature and 37°C, the cellulase preparation was found to retain 100, 75 and 60% of its initial activity, respectively.
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  • 93
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 131-135 
    ISSN: 1476-5535
    Keywords: Cheese ; Starters ; Production ; Alignate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Calcium alginate beads containingLactococcus lactis cells were used for three batch fermentations of milk or a commercially available growth medium (Gold Complete, Nordica) with the aim of producing concentrated cultures. Repeated fermentations did not significantly increase bead CFU counts which were between 3.3–7.8×1010 CFU/g. During the second and third fermentations, which lasted 6 h each, the bead populations decreased if the incubation was extended over 2 h. There was cell release from the beads. Fermentation media and fermentation time all had an effect on free cell counts, but none of these factors statistically interacted. Free cell counts were higher at the end of fermentations 2 and 3 than in the first fermentation and approximately 50% of the population was in the free state. Free cell counts were higher when the beads were incubated in Gold complete than in milk. Although the total bacterial population of a standard free cell fermentation was always higher than those having immobilized cells, immobilized cell technology did enable the production of dense cultures.
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  • 94
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 247-250 
    ISSN: 1476-5535
    Keywords: Fructosyl-transferring enzyme ; 1-Kestose ; Fructo-oligosaccharide ; Continuous production
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary β-Fructofuranosidase P-1 fromAureobasidium sp. ATCC 20524, which produces a fructo-oligosaccharide (1-kestose) from sucrose, was immobilized covalently onto alkylamine porous silica with glutaraldehyde at high efficiency (44.4%). Optimum pore diameter of porous silica for immobilization of the enzyme was 91.7 nm. The enzymatic profiles of immobilized enzyme were almost identical to the native one except its stabilities to temperature and metal ions were improved. 1-Kestose was produced continuously and selectively from 40% (w/v) sucrose at fast flow rates by a column packed with the immobilized enzyme for up to 26 days, and the effluent concentration of 1-kestose remained in the range 113–135 mg ml−1.
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  • 95
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    Journal of industrial microbiology and biotechnology 9 (1992), S. 257-260 
    ISSN: 1476-5535
    Keywords: Polysaccharide ; Fructan ; Gum ; Fermentation ; Bacillus polymyxa ; Sweetener
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary Bacillus polymyxa (NRRL-18475) produced a levan-type fructan (B, 2→6 fructofuranoside) when grown on sucrose, sugarcane juice, and sugarbeet molasses. The organism converted about 46% of the fructose moiety of sucrose to levan when grown on sucrose medium, however, the yields of levan from sugarcane juice and beet molasses were much less than sucrose solution. Such sugarcane juice and beet molasses can be made a good substrate for levan production by various modifications. Adding peptone to sugarcane juice or passing beet molasses through a column of gel filtration media improved levan yield to a level almost comparable to that obtained from sucrose.
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  • 96
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    Bulletin of mathematical biology 60 (1998), S. 597-613 
    ISSN: 1522-9602
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
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  • 97
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    Bulletin of mathematical biology 60 (1998), S. 505-543 
    ISSN: 1522-9602
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Abstract It is theoretically analysed whether the structural design of ATP-producing pathways, in particular the design of glycolysis, may be explained by optimization principles. On the basis of kinetic and thermodynamic principles conclusions are derived concerning the stoichiometry of these pathways in states of high ATP production rates. One of the extensions to previous investigations is that the concentrations of the adenine nucleotides are taken into account as variable quantities. This necessitates the consideration of an interaction of the ATP-producing system I with an external ATP-consuming system II. A great variety of pathways is studied which differ in the number and location of ATP-consuming reactions, ATP-producing reactions and reactions involving inorganic phosphate. The corresponding number of possible pathways may be calculated in an explicit manner as a function of the number of those reactions which do not couple to ATP or inorganic phosphate. The kinetics of the individual reactions are described by linear or bilinear functions of reactant concentrations and all rate equations are expressed in terms of equilibrium constants and characteristic times. A thermodynamical analysis of the two coupled systems yields upper and lower limits for the concentration of ATP and an explicit expression for the maximal difference between the number of ATP-producing and ATP-consuming reactions of system I. The following results of the optimization are obtained. (i) The ATP production rate always increases if the ATP-producing reactions as well as those reactions characterized by an uptake of inorganic phosphate are shifted as far as possible towards the end of system I. (ii) Explicit conditions for the optimal location of the ATP-consuming reactions are presented. The results are discussed in the context of characteristic times as well as in terms of enzyme kinetic parameters. (iii) For two sets of characteristic times the resulting stoichiometries and their corresponding steady-state fluxes are investigated in detail. One of these stoichiometries shows a close correspondence to contemporary standard glycolysis. (iv) It is shown that most possible pathways result in a very low steady-state flux, that is, the optimal stoichiometry is characterized by a significant selective advantage. (v) The standard free energy profile of a pathway with an optimal stoichiometry is discussed. It differs significantly from the free energy profiles of nonoptimized pathways.
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  • 98
    ISSN: 1522-9602
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Abstract Calcification and eventual integration of orthopedic implants into bone is important to many load-bearing devices, and the influence of load and implant stiffness on this process are assessed in this mathematical modelling study. Three research questions are posed in this study. First, can limiting material models provide useful information on the overall behavior of the tissue adjacent to a loaded orthopedic implant? Second, can the limiting models lead to optimization criteria? Third, can an optimization approach be used to differentiate between the four prospective remodeling rate equations which are proposed? The answers are yes, yes, and no, respectively. A two degree of freedom lumped parameter model for axial loading of an intramedullary implant is considered. Two limiting composite material models are used, and the strain energy density in the calcified and non-calcified phases are assessed as stimuli for calcification. The rate equations posed here assume that the calcified material volume fraction decreases at high strain-energy densities, and increases at small strain-energy densities. In all four cases (both models, both phases) the steady states for these rate equations find equilibrium points of indicator functions which are a weighted sum of total strain energy and the mass of calcified tissue in the layer considered. The weights on strain-energy density and mass differ in each case. This shows that for appropriate choices of parameters, all four models can yield the same results, and it also shows that an optimization approach does not uniquely determine the appropriate rate equation in these cases. The rate equations showed complicated dynamic behavior and a phase-plane analysis was used which led to upper bounds on load, which depended on implant stiffness and distal support. The predictions of the four cases studied are compared.
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  • 99
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    Bulletin of mathematical biology 60 (1998), S. 703-719 
    ISSN: 1522-9602
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Abstract Atritrophic food-chain chemostat model composed of a prey with Monod-type nutrient uptake, a Holling Type II predator and a Holling Type II exploited superpredator is considered in this paper. The bifurcations of the model show that dynamic complexity first increases and then decreases with the nutrient supplied to the bottom of the food chain. Extensive simulations prove that the same holds for food yield, i.e., there exists an optimum nutrient supply which maximizes mean food yield. Finally, a comparative analysis of the results points out that the optimum nutrient supply practically coincides with the nutrient supply separating chaotic dynamics from high-frequency cyclic dynamics. This reinforces the idea, already known for simpler models, that food yield maximization requires that the system behaves on the edge of chaos.
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  • 100
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    Bulletin of mathematical biology 60 (1998), S. 721-751 
    ISSN: 1522-9602
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Abstract We developed a non-stochastic methodology to deal with the uncertainty in models of population dynamics. This approach assumed that noise is bounded; it led to models based on differential inclusions rather than stochastic processes, and avoided stochastic calculus. Examples of estimations of extinction times for exponential and logistic population growth with environmental and demographic noise are presented.
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