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  • Ocean circulation  (8)
  • Observational techniques and algorithms  (6)
  • AAP bacteriabacteriochlorophyllcarbon cyclingDOCphotoheterotrophy
  • AC9miR-181acAMPAPLcell differentiation
  • American Meteorological Society  (14)
  • Springer Nature  (2)
  • Blackwell Publishing Ltd
  • Copernicus
  • Hindawi
  • Institute of Electrical and Electronics Engineers
  • Molecular Diversity Preservation International
  • Springer Science + Business Media
  • 2020-2022
  • 2010-2014  (16)
  • 1985-1989
  • 1960-1964
  • 2014  (13)
  • 2013  (3)
  • 1988
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  • 2020-2022
  • 2010-2014  (16)
  • 1985-1989
  • 1960-1964
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  • 1
    Publication Date: 2014-10-22
    Description: Leucine incorporation by aerobic anoxygenic phototrophic bacteria in the Delaware estuary The ISME Journal 8, 2339 (November 2014). doi:10.1038/ismej.2014.75 Authors: Monica R Stegman, Matthew T Cottrell & David L Kirchman
    Keywords: AAP bacteriabacteriochlorophyllcarbon cyclingDOCphotoheterotrophy
    Print ISSN: 1751-7362
    Electronic ISSN: 1751-7370
    Topics: Biology
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  • 2
    Publication Date: 2014-04-11
    Description: MicroRNA-181a-mediated downregulation of AC9 protein decreases intracellular cAMP level and inhibits ATRA-induced APL cell differentiation Cell Death and Disease 5, e1161 (April 2014). doi:10.1038/cddis.2014.130 Authors: L K Zhuang, G P Xu, X R Pan, Y J Lou, Q P Zou, D Xia, W W Yan, Y T Zhang, P M Jia & J H Tong
    Keywords: AC9miR-181acAMPAPLcell differentiation
    Electronic ISSN: 2041-4889
    Topics: Biology , Medicine
    Published by Springer Nature
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  • 3
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 2234–2253, doi:10.1175/JPO-D-12-033.1.
    Description: Meridional velocity, mass, and heat transport in the equatorial oceans are difficult to estimate because of the nonapplicability of the geostrophic balance. For this purpose a steady-state model is utilized in the equatorial Indian Ocean using NCEP wind stress and temperature and salinity data from the World Ocean Atlas 2005 (WOA05) and Argo. The results show a Somali Current flowing to the south during the winter monsoon carrying −11.5 ± 1.3 Sv (1 Sv ≡ 106 m3 s−1) and −12.3 ± 0.3 Sv from WOA05 and Argo, respectively. In the summer monsoon the Somali Current reverses to the north transporting 16.8 ± 1.2 Sv and 19.8 ± 0.6 Sv in the WOA05 and Argo results. Transitional periods are considered together and in consequence, there is not a clear Somali Current present in this period. Model results fit with in situ measurements made around the region, although Argo data results are quite more realistic than WOA05 data results.
    Description: This study has been partly funded by the MOC Project (CTM 2008- 06438) and the Spanish contribution to the Argo network (AC2009 ACI2009-0998), financed by the Spanish Government and Feder.
    Description: 2013-06-01
    Keywords: Indian Ocean ; Subtropics ; Currents ; Ocean circulation ; Transport ; Wind stress
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 4
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2012. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 42 (2012): 2283–2296, doi:10.1175/JPO-D-11-0227.1.
    Description: The dynamic influence of thermohaline circulation on wind-driven circulation in the South China Sea (SCS) is studied using a simple reduced gravity model, in which the upwelling driven by mixing in the abyssal ocean is treated in terms of an upward pumping distributed at the base of the upper layer. Because of the strong upwelling of deep water, the cyclonic gyre in the northern SCS is weakened, but the anticyclonic gyre in the southern SCS is intensified in summer, while cyclonic gyres in both the southern and northern SCS are weakened in winter. For all seasons, the dynamic influence of thermohaline circulation on wind-driven circulation is larger in the northern SCS than in the southern SCS. Analysis suggests that the upwelling associated with the thermohaline circulation in the deep ocean plays a crucial role in regulating the wind-driven circulation in the upper ocean.
    Description: G. Wang is supported by the National Science Foundation of China (NSFC Grants 41125019, 40725017, and 40976017).D.Chen is supported by grants from the Ministry of Science and Technology (2010DFA21012), the State Oceanic Administration (201105018), and the NSFC (91128204).
    Description: 2013-06-01
    Keywords: Abyssal circulation ; Dynamics ; Ocean circulation ; Upwelling/downwelling
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
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    American Meteorological Society
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2013. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 43 (2013): 1398–1406, doi:10.1175/JPO-D-13-028.1.
    Description: An adiabatic, inertial, and quasigeostrophic model is used to discuss the interaction of surface Ekman transport with an island. The theory extends the recent work of Spall and Pedlosky to include an analytical and nonlinear model for the interaction. The presence of an island that interrupts a uniform Ekman layer transport raises interesting questions about the resulting circulation. The consequential upwelling around the island can lead to a local intake of fluid from the geostrophic region beneath the Ekman layer or to a more complex flow around the island in which the fluid entering the Ekman layer on one portion of the island's perimeter is replaced by a flow along the island's boundary from a downwelling region located elsewhere on the island. This becomes especially pertinent when the flow is quasigeostrophic and adiabatic. The oncoming geostrophic flow that balances the offshore Ekman flux is largely diverted around the island, and the Ekman flux is fed by a transfer of fluid from the western to the eastern side of the island. As opposed to the linear, dissipative model described earlier, this transfer takes place even in the absence of a topographic skirt around the island. The principal effect of topography in the inertial model is to introduce an asymmetry between the circulation on the northern and southern sides of the island. The quasigeostrophic model allows a simple solution to the model problem with topography and yet the resulting three-dimensional circulation is surprisingly complex with streamlines connecting each side of the island.
    Description: This research was supported in part by NSF Grant OCE Grant 0925061.
    Keywords: Baroclinic flows ; Large-scale motions ; Nonlinear dynamics ; Ocean circulation ; Ocean dynamics ; Topographic effects
    Repository Name: Woods Hole Open Access Server
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  • 6
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 44 (2014): 427–444, doi:10.1175/JPO-D-13-070.1.
    Description: Between 25 September 2007 and 28 September 2009, a heavily instrumented mooring was deployed in the Labrador Sea, offshore of the location where warm-core, anticyclonic Irminger rings are formed. The 2-year time series offers insight into the vertical and horizontal structure of newly formed Irminger rings and their heat and salt transport into the interior basin. In 2 years, 12 Irminger rings passed by the mooring. Of these, 11 had distinct properties, while 1 anticyclone likely passed the mooring twice. Eddy radii (11–35 km) were estimated using the dynamic height signal of the anticyclones (8–18 cm) together with the observed velocities. The anticyclones show a seasonal cycle in core properties when observed (1.9°C in temperature and 0.07 in salinity at middepth) that has not been described before. The temperature and salinity are highest in fall and lowest in spring. Cold, fresh caps, suggested to be an important source of freshwater, were seen in spring but were almost nonexistent in fall. The heat and freshwater contributions by the Irminger rings show a large spread (from 12 to 108 MJ m−2 and from −0.5 to −4.7 cm, respectively) for two reasons. First, the large range of radii leads to large differences in transported volume. Second, the seasonal cycle leads to changes in heat and salt content per unit volume. This implies that estimates of heat and freshwater transport by eddies should take the distribution of eddy properties into account in order to accurately assess their contribution to the restratification.
    Description: This work was supported by the U.S. National Science Foundation and the Postdoctoral Scholar Program at the Woods Hole Oceanographic Institution, with funding provided by the Devonshire Foundation.
    Description: 2014-08-01
    Keywords: Geographic location/entity ; North Atlantic Ocean ; Circulation/ Dynamics ; Mesoscale processes ; Atm/Ocean Structure/ Phenomena ; Anticyclones ; Boundary currents ; Observational techniques and algorithms ; In situ oceanic observations ; Variability ; Seasonal cycle
    Repository Name: Woods Hole Open Access Server
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  • 7
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 44 (2014): 413–426, doi:10.1175/JPO-D-13-0117.1.
    Description: Salinity and temperature profiles from drifting ice-tethered profilers in the Beaufort gyre region of the Canada Basin are used to characterize and quantify the regional near-inertial internal wave field over one year. Vertical displacements of potential density surfaces from the surface to 750-m depth are tracked from fall 2006 to fall 2007. Because of the time resolution and irregular sampling of the ice-tethered profilers, near-inertial frequency signals are marginally resolved. Complex demodulation is used to determine variations with a time scale of several days in the amplitude and phase of waves at a specified near-inertial frequency. Characteristics and variability of the wave field over the course of the year are investigated quantitatively and related to changes in surface wind forcing and sea ice cover.
    Description: The ITP program and J. Toole’s contributions were supported by the National Science Foundation Office of Polar Programs Arctic Observing Network. We acknowledge the support of the Office of Naval Research (Grant N00014-11-1-0454) for this study. Support for H. Dosser was also provided by the Natural Sciences and Engineering Research Council of Canada.
    Description: 2014-08-01
    Keywords: Geographic location/entity ; Arctic ; Circulation/ Dynamics ; Inertia-gravity waves ; Internal waves ; Observational techniques and algorithms ; Profilers, oceanic
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 44 (2014): 834-849, doi:10.1175/JPO-D-13-0179.1.
    Description: A hydrostatic numerical model with alongshore-uniform barotropic M2 tidal boundary forcing and idealized shelfbreak canyon bathymetries is used to study internal-tide generation and onshore propagation. A control simulation with Mid-Atlantic Bight representative bathymetry is supported by other simulations that serve to identify specific processes. The canyons and adjacent slopes are transcritical in steepness with respect to M2 internal wave characteristics. Although the various canyons are symmetrical in structure, barotropic-to-baroclinic energy conversion rates Cυ are typically asymmetrical within them. The resulting onshore-propagating internal waves are the strongest along beams in the horizontal plane, with the stronger beam in the control simulation lying on the side with higher Cυ. Analysis of the simulation results suggests that the cross-canyon asymmetrical Cυ distributions are caused by multiple-scattering effects on one canyon side slope, because the phase variation in the spatially distributed internal-tide sources, governed by variations in the orientation of the bathymetry gradient vector, allows resonant internal-tide generation. A less complex, semianalytical, modal internal wave propagation model with sources placed along the critical-slope locus (where the M2 internal wave characteristic is tangent to the seabed) and variable source phasing is used to diagnose the physics of the horizontal beams of onshore internal wave radiation. Model analysis explains how the cross-canyon phase and amplitude variations in the locally generated internal tides affect parameters of the internal-tide beams. Under the assumption that strong internal tides on continental shelves evolve to include nonlinear wave trains, the asymmetrical internal-tide generation and beam radiation effects may lead to nonlinear internal waves and enhanced mixing occurring preferentially on one side of shelfbreak canyons, in the absence of other influencing factors.
    Description: All three authors were supported by Office of Naval Research (ONR) Grant N00014-11-1-0701. WGZ was additionally supported by the National Science Foundation (NSF) Grant OCE-1154575, and TFD was additionally supported by NSF Grant OCE-1060430.
    Description: 2014-09-01
    Keywords: Circulation/ Dynamics ; Baroclinic flows ; Internal waves ; Ocean circulation ; Topographic effects ; Waves, oceanic ; Models and modeling ; Numerical analysis/modeling
    Repository Name: Woods Hole Open Access Server
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  • 9
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 44 (2014): 1466–1492, doi:10.1175/JPO-D-12-0154.1.
    Description: Simultaneous full-depth microstructure measurements of turbulence and finestructure measurements of velocity and density are analyzed to investigate the relationship between turbulence and the internal wave field in the Antarctic Circumpolar Current. These data reveal a systematic near-bottom overprediction of the turbulent kinetic energy dissipation rate by finescale parameterization methods in select locations. Sites of near-bottom overprediction are typically characterized by large near-bottom flow speeds and elevated topographic roughness. Further, lower-than-average shear-to-strain ratios indicative of a less near-inertial wave field, rotary spectra suggesting a predominance of upward internal wave energy propagation, and enhanced narrowband variance at vertical wavelengths on the order of 100 m are found at these locations. Finally, finescale overprediction is typically associated with elevated Froude numbers based on the near-bottom shear of the background flow, and a background flow with a systematic backing tendency. Agreement of microstructure- and finestructure-based estimates within the expected uncertainty of the parameterization away from these special sites, the reproducibility of the overprediction signal across various parameterization implementations, and an absence of indications of atypical instrument noise at sites of parameterization overprediction, all suggest that physics not encapsulated by the parameterization play a role in the fate of bottom-generated waves at these locations. Several plausible underpinning mechanisms based on the limited available evidence are discussed that offer guidance for future studies.
    Description: The SOFine project is funded by the United Kingdom’s Natural Environmental Research Council (NERC) (Grant NE/G001510/1). SW acknowledges the support of anARCDiscovery Early CareerResearchAward (Grant DE120102927), as well as the Grantham Institute for Climate Change, Imperial College London, and the ARC Centre of Excellence for Climate System Science (Grant CE110001028). ACNG acknowledges the support of a NERC Advanced Research Fellowship (Grant NE/C517633/1).KLP acknowledges support fromWoods Hole Oceanographic Institution bridge support funds.
    Description: 2014-11-01
    Keywords: Circulation/ Dynamics ; Diapycnal mixing ; Internal waves ; Small scale processes ; Turbulence ; Observational techniques and algorithms ; In situ oceanic observations ; Profilers, oceanic
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 44 (2014): 2593–2616, doi:10.1175/JPO-D-13-0120.1.
    Description: The first direct estimate of the rate at which geostrophic turbulence mixes tracers across the Antarctic Circumpolar Current is presented. The estimate is computed from the spreading of a tracer released upstream of Drake Passage as part of the Diapycnal and Isopycnal Mixing Experiment in the Southern Ocean (DIMES). The meridional eddy diffusivity, a measure of the rate at which the area of the tracer spreads along an isopycnal across the Antarctic Circumpolar Current, is 710 ± 260 m2 s−1 at 1500-m depth. The estimate is based on an extrapolation of the tracer-based diffusivity using output from numerical tracers released in a one-twentieth of a degree model simulation of the circulation and turbulence in the Drake Passage region. The model is shown to reproduce the observed spreading rate of the DIMES tracer and suggests that the meridional eddy diffusivity is weak in the upper kilometer of the water column with values below 500 m2 s−1 and peaks at the steering level, near 2 km, where the eddy phase speed is equal to the mean flow speed. These vertical variations are not captured by ocean models presently used for climate studies, but they significantly affect the ventilation of different water masses.
    Description: NSF support through Awards OCE-1233832, OCE-1232962, and OCE-1048926 is gratefully acknowledged.
    Description: 2015-04-01
    Keywords: Geographic location/entity ; Southern Ocean ; Circulation/ Dynamics ; Diffusion ; Eddies ; Ocean circulation ; Turbulence ; Physical Meteorology and Climatology ; Isopycnal mixing
    Repository Name: Woods Hole Open Access Server
    Type: Article
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