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  • Evolution  (34)
  • Springer  (34)
  • American Chemical Society
  • National Academy of Sciences
  • Nature Publishing Group
  • 2005-2009
  • 1985-1989  (34)
  • 1930-1934
  • 1987  (34)
Collection
Publisher
  • Springer  (34)
  • American Chemical Society
  • National Academy of Sciences
  • Nature Publishing Group
Years
  • 2005-2009
  • 1985-1989  (34)
  • 1930-1934
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  • 1
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    Springer
    Cellular and molecular life sciences 43 (1987), S. 202-205 
    ISSN: 1420-9071
    Keywords: Evolution ; substrate specificity ; serological homologies ; flavone biosynthesis ; Silene ; glycosyltransferases
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Summary The variation in flavone glycosylation patterns inSilene is the result of the expression of six genetic loci, which control either the presence of allozymes differing in substrate specificity or isozymes regulated differently during development. Serological studies showed that at least three of these six loci are evolutionarily related. The genetic mechanisms leading to these complicated variation patterns and the role of this polymorphism for the plant in its interaction with the environment are discussed.
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  • 2
    ISSN: 1432-0983
    Keywords: Comparative restriction site mapping ; Gene mapping ; Deletions and additions ; Chloroplast genome ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The chloroplast genomes from the interfertile green algae Chlamydomonas eugametos and C. moewusii have been compared in their overall sequence organization. Physical mapping of Aval, BstEII and EcoRI restriction sites on the C. moewusii chloroplast genome revealed that this 292 kilobase-pair (kbp) genome is 49 kbp larger than the C. eugametos genome. Heterologous fragment hybridizations indicated the same order of common sequence elements on the two algal genomes. Almost all of the 49 kbp size difference is accounted for by the presence of two large extra sequences in C. moewusii: a 21 kbp sequence in the inverted repeat and a 5.8 kbp sequence in the single copy-region bordering the 16S ribosomal RNA (rRNA) genes. In addition to these two major deletion/addition differences, 42 restriction site and fragment length differences (ranging from 100 to 500 base pairs) were mapped on the two algal genomes. Surprisingly, the greatest density of these differences was found to be confined within the inverted repeat, one of the most conserved regions of land plant chloroplast genomes.
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  • 3
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    Journal of molecular evolution 25 (1987), S. 141-150 
    ISSN: 1432-1432
    Keywords: 20S particle ; Prosome ; Evolution ; Small cytoplasmic RNAs ; Heat shock proteins
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We have purified and characterized a particle sedimenting at 20S from the postribosomal fraction of yeast, wheat germ,Drosophila melanogaster tissue culture cells, chicken embryo fibroblasts, rabbit reticulocyte lysate, and HeLa cells. Most of the protein constituents of the 20S particle have molecular weights of 20–35 kd and differ between species; however, some do have similar molecular weights and isoelectric points, suggesting they are related. Several low-molecular-weight RNAs, distinct from tRNAs, co-purify with the particle isolated from all these species and show increasingly more complex patterns ascending the arbitrary order from yeast to human (yeast, plant, insect, bird, and mammals). InDrosophila, we present evidence that these small RNAs are tightly associated with this 20S structure.
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  • 4
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    Journal of molecular evolution 25 (1987), S. 248-254 
    ISSN: 1432-1432
    Keywords: Intervening sequence ; Evolution ; Archaebacteria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Nucleotide sequences of four tRNA genes from the archaebacteriumSulfolobus solfataricus have been determined. Based upon DNA sequence analysis, three of the four genes contain presumptive intervening sequences (introns) in their anticodon loops. The three introns can form similar, but not identical, secondary structures. The cleavage site at the 3′ end of all three introns occurs in a three-base bulge loop. All four genes lack an encoded 3′ CCA terminus and are flanked by A+T-rich DNA sequences. Two of the genes are located on antiparallel DNA strands, with their 3′ termini separated by 414 bp of sequence. Including two previously published sequences, a total of five introns have now been detected among sixS. solfataricus tRNA genes. Occurrence of introns at corresponding locations in both archaebacterial and eukaryotic tRNA genes suggests that the intron/exon form of gene structure predates the evolutionary divergence of the archaebacteria and the eukaryotes.
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  • 5
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    Journal of molecular evolution 25 (1987), S. 261-269 
    ISSN: 1432-1432
    Keywords: Fimbriae ; Pili ; Protein structure ; Microbial phylogeny ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We have analyzed and compared the amino acid sequences of the type 4 fimbrial subunits fromPseudomonas aeruginosa, Moraxella bovis, M. nonliquefaciens, Bacteroides nodosus, Neisseria gonorrhoeae, andN. meningitidis. We propose a consensus sequence for the highly conserved aminoterminal regions of these proteins. In the variable regions, a domain corresponding to an epitope common toN. gonorrhoeae andN. meningitidis fimbriae is conserved, both in sequence and in environment, in fimbrial subunits fromB. nodosus. The subunits fromM. bovis andP. aeruginosa do not show any homologies to this sequence. In all of the subunits, the carboxy-terminal half of the molecule consists of a series of fairly hydrophobic domains. The last three domains, two of which include the cysteines of the disulfide bridge inN. gonorrhoeae, P. aeruginosa, andM. bovis, are more or less conserved in sequence in all of the proteins including that ofB. nodosus. We propose that these conserved hydrophobic regions, which have the potential to form a series of beta-sheets, form a structural framework around which more variable hydrophilic sequences determining immunological profile are arranged. The evolutionary relationships of the contemporary proteins and the distribution of type 4 fimbriae are also discussed.
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  • 6
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    Journal of molecular evolution 26 (1987), S. 274-283 
    ISSN: 1432-1432
    Keywords: Cardiotoxin ; Circular dichroism ; Cytotoxin ; Evolution ; Protein
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary In order to analyze the evolutionary behavior of the cobra venom cytotoxins, their probable tertiary structure was predicted using computer graphics. The 41 amino acid sequences known show that the major evolutionary changes have taken place in two particularly exposed areas of the molecular surface. In each area, neighboring residue positions seem to have evolved interdependently, but there is no obvious interdependence between the two areas. Indeed, the relative evolution of these two areas prompts a subdivision of the sequence set into four groups. According to the known cytotoxin circular dichroism spectra, one of these four groups could be characterized by a difference in molecular secondary structure. Sine the two variable areas have functional associations, it is suggested that their evolution may be governed by a target with several similar binding sites.
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  • 7
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    Journal of molecular evolution 26 (1987), S. 341-346 
    ISSN: 1432-1432
    Keywords: Evolution ; tRNA ; Recognition sites ; Statistics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A compilation of known tRNA, and tRNA gene sequences from archaebacteria, eubacteria, and eukaryotes permits the construction of tRNA cloverleafs which show conserved structural elements for each tRNA family. Positions conserved across the three kingdoms are thought to represent archetypical features of tRNAs which preceded the divergence of these kingdoms.
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  • 8
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    Journal of molecular evolution 24 (1987), S. 228-235 
    ISSN: 1432-1432
    Keywords: 5S RNA ; Correspondence analysis ; Multivariate statistics ; Evolution ; Phylogeny
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Correspondence analysis (a form of multivariate statistics) applied to 74 5S ribosomal RNA sequences indicates that the sequences are interrelated in a systematic, nonrandom fashion. Aligned sequences are represented as vectors in a 5N-dimensional space, where N is the number of base positions in the 5S RNA molecule. Mutually orthogonal directions (called factor axes) along which intersequence variance is greatest are defined in this hyperspace. Projection of the sequences onto planes defined by these factorial directions reveals clustering of species that is suggestive of phylogenetic relationships. For each factorial direction, correspondence analysis points to regions of “importance”, i.e., those base positions at which the systematic changes occur that define that particular direction. In effect, the technique provides a rapid determination of group-specific signatures. In several instances, similarities between sequences are indicated that have only recently been inferred from visual base-to-base comparisons. These results suggest that correspondence analysis may provide a valuable starting point from which to uncover the patterns of change underlying the evolution of a macromolecule, such as 5S RNA.
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  • 9
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    Journal of molecular evolution 24 (1987), S. 236-251 
    ISSN: 1432-1432
    Keywords: 28S rRNA ; RNA secondary structure ; Evolution ; Ribosome ; Translation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We have determined the secondary structure of the human 28S rRNA molecule based on comparative analysis of available eukaryotic cytoplasmic and prokaryotic large-rRNA gene sequences. Examination of large-rRNA sequences of both distantly and closely related species has enabled us to derive a structure that accounts both for highly conserved sequence tracts and for previously unanalyzed variable-sequence tracts that account for the evolutionary differences in size among the large rRNAs. Human 28S rRNA is composed of two different types of sequence tracts: conserved and variable. They differ in composition, degree of conservation, and evolution. The conserved regions demonstrate a striking constancy of size and sequence. We have confirmed that the conserved regions of large-rRNA molecules are capable of forming structures that are superimposable on one another. The variable regions contain the sequences responsible for the 83% increase in size of the human large-rRNA molecule over that ofEscherichia coli. Their locations in the gene are maintained during evolution. They are G+C rich and largely nonhomologous, contain simple repetitive sequences, appear to evolve by frequent recombinational events, and are capable of forming large, stable hairpins. The secondary-structure model presented here is in close agreement with existing prokaryotic 23S rRNA secondary-structure models. The introduction of this model helps resolve differences between previously proposed prokaryotic and eukaryotic large-rRNA secondary-structure models.
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  • 10
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    Journal of molecular evolution 25 (1987), S. 15-19 
    ISSN: 1432-1432
    Keywords: β-Turns ; Secondary structures ; Chirality ; Genetic code ; Biosynthetic pathways ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The physicochemical properties of β-turns suggest their biological importance prior to the formation of the genetic code. These properties include ones potentially affecting the preference for eitherl- ord-amino acids. The abundance of certain amino acids in β-turns is correlated with their assignment to a small, well-defined part of the genetic code and with their role as metabolic precursors for other amino acids. It is proposed that in the prebiotic environment, β-turns became objects of selection that influenced the evolution of the genetic code and biosynthetic pathways for amino acids.
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  • 11
    ISSN: 1432-1432
    Keywords: Balbiani rings ; Evolution ; Immunological detection ; Nucleotide sequence ; 3′ End
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Two cDNA clones representing the 3′-end regions of BR1 and BR2 75S mRNA were obtained fromChironomus pallidivittatus. The regular structure characterizing the core of these genes, consisting of tandemly arranged repeat units, changes into a more irregular structure toward the 3′ end. Distal to a standard type of repeat unit with a characteristic excess of positive charges, a new type of repeat with a high, negative charge density is interspersed among parts of the standard unit. The last 111 amino acids before the stop codon represent a unique region distinctly different in amino acid composition from upstream regions, and include two partially homologous hydrophobic regions. Sequence comparison of 3′-end regions from clones representing BR1 and BR2 genes indicates striking sequence conservation in the unique part of the region. Analysis of the level of silent site divergence shows that the homology increases in the 3′ direction up to the polyadenylation site. That the unique region is retained as a part of the secreted protein is shown by Western blotting.
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  • 12
    ISSN: 1432-1432
    Keywords: Histone genes ; Echinoderms ; Maternal mRNA ; Development ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The organization and maternal expression of histone genes differ greatly between the two echinoderm classes represented by the sea stars and sea urchins. We have isolated and characterized a 5.3-kb genomic DNA fragment encoding core histone genes in the sea starPisaster ochraceus. The majority of histone genes are organized as tandem repeats of the 5.3-kb fragment, which is present in as many as 700 copies per haploid genome. The identity, precise location, and transcriptional polarity of individual core histone genes within the repeat were determined by DNA sequence analyses. The gene order in the sea star (H2B, H2A, H4, H3) is different from that in sea urchins (H2B, H3, H2A, H4). What is remarkable is the low level of maternal histone mRNA inP. ochraceus eggs relative to that in sea urchins. This observation supports a recent suggestion that major changes in mode of gene expression, rather than in gene organization or copy number, can be correlated with major events in echinoderm evolution.
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  • 13
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    Journal of molecular evolution 25 (1987), S. 81-88 
    ISSN: 1432-1432
    Keywords: Glutathione ; Evolution ; Phototrophic microorganisms ; Oxygen toxicity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Of the many roles ascribed to glutathione (GSH) the one most clearly established is its role in the protection of higher eucaryotes against oxygen toxicity through destruction of thiol-reactive oxygen byproducts. If this is the primary function of GSH then GSH metabolism should have evolved during or after the evolution of oxygenic photosynthesis. That many bacteria do not produce GSH is consistent with this view. In the present study we have examined the low-molecular-weight thiol composition of a variety of phototrophic microorganisms to ascertain how evolution of GSH production is related to evolution of oxygenic photosynthesis. Cells were extracted in the presence of monobromobimane (mBBr) to convert thiols to fluorescent derivatives, which were analyzed by highpressure liquid chromatography. Significant levels of GSH were not found in the green bacteria (Chlorobium thiosulfatophilum andChloroflexus aurantiacus). Substantial levels of GSH were present in the purple bacteria (Chromatium vinosum, Rhodospirillum rubrum, Rhodobacter sphaeroides, andRhodocyclus gelatinosa), the cyanobacteria [Anacystis nidulans, Microcoleus chthonoplastes S.G., Nostoc muscorum, Oscillatoria amphigranulata, Oscillatoria limnetica, Oscillatoria sp. (Stinky Spring, Utah),Oscillatoria terebriformis, Plectonema boryanum, andSynechococcus lividus], and eucaryotic algae (Chlorella pyrenoidsa, Chlorella vulgaris, Euglena gracilis, Scenedesmus obliquus, andChlamydomonas reinhardtii). Other thiols measured included cysteine, γ-glutamylcysteine, thiosulfate, coenzyme A, and sulfide; several unidentified thiols were also detected. Many of the organisms examined also exhibited a marked ability to reduce mBBr to syn-(methyl,methyl)bimane, an ability that was quenched by treatment with 2-pyridyl disulfide or 5,5′-bisdithio-(2-nitrobenzoic acid) prior to reaction with mBBR. These observations indicate the presence of a reducing system capable of electron transfer to mBBr and reduction of reactive disulfides. The distribution of GSH in phototrophic eubacteria indicates that GSH synthesis evolved at or around the time that oxygenic photosynthesis evolved.
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  • 14
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    Oecologia 72 (1987), S. 69-76 
    ISSN: 1432-1939
    Keywords: Cabbage butterfly ; Pieris rapae ; Evolution ; Adaptation ; Colonisation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Australian and U.K. Pieris rapae differ markedly in their oviposition behaviour; U.K. females produce a more aggregated egg distribution, and lay their eggs more quickly, than do Australian females. The adaptive reason for this divergence probably lies in the relative costs of increased flight time (more costly in the U.K.) and increased local crowding (more costly in Australia). There is also a strong relationship between juvenile developmental rate (at constant temperature) and oviposition behaviour, but the form of this relationship differed between the two populations. The adaptive reasons for the link between developmental rate and behaviour is not clear. It may be that this link represents the tip of the iceberg; i.e. that physiological, developmental, and behabioral characters all co-vary in ways and for reasons that we do not yet understand.
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  • 15
    ISSN: 1432-0983
    Keywords: ATP synthase β ; Selective constraint ; mtDNA ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We have cloned and sequenced human and bovine cDNAs for the β subunit of the ATP synthase (ATP-synß), a nuclear DNA (nDNA) encoded oxidative phosphorylation (OXPHOS) gene. The two cDNAs were found to share 99% amino acid homology and 94% nucleotide homology. The evolutionary rate of ATPsynß was then compared with that of two mitochondrial DNA (mtDNA) ATP synthase genes (ATPase 6 and 8), seven other mtDNA OXPHOS genes, and a number of nuclear genes. The synonymous substitution rate for ATPsynß proved to be 1.9 × 10−9 substitutions per site per year (substitutions × site−1 × year−1) (SSY). This is less than 1/2 that of the average nDNA gene, 1/12 the rate of ATPase 6 and 8, and 1/17 the rate of the average mtDNA gene. The synonymous and replacement substitution rates were used to calculate a new parameter, the “selective constraint ratio”. This revealed that even the most variable mtDNA protein was more constrained than the average nDNA protein. Thus, the high substitution mutation rate and strong selective constraints of mammalian mtDNA proteins suggest that mtDNA mutations may result in a disproportionately large number of human hereditary diseases of OXPHOS.
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  • 16
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    Ecological research 2 (1987), S. 175-183 
    ISSN: 1440-1703
    Keywords: Egg size ; Evolution ; Hesperiidae ; Host specificity ; Leaf toughness
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The adaptive significance of egg size of skippers (Lepidoptera; Hesperiidae) in Japan was evaluated in relation to the leaf toughness of their major host grasses. The hesperids that fed on tougher grasses laid larger eggs. Hesperids that laid larger eggs were larger in body size, but lower in fecundity. They also had a wider host range. Thus, despite the lower fecundity, hesperids may benefit from large eggs by having a wider host range of larvae. Grass feeders had wider range of host plants than broadleaf feeders.
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  • 17
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    Journal of mathematical biology 25 (1987), S. 393-409 
    ISSN: 1432-1416
    Keywords: Evolution ; Evolutionary stable states ; Games theory ; Linear programming ; Convex polyhedra ; Linear complementarity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Abstract The problem of finding an Evolutionary Stable Strategy (ESS) for an animal species is defined. It is shown how such strategies are a subset of the equilibrium solutions for a particular non-zero sum game. These equilibrium solutions are then shown to arise from the vertices of a particular convex polyhedron. A method of finding these equilibrium solutions through the vertices and then the ESS solutions is given. This is illustrated by a number of numerical examples taken from the literature. Finally an alternative approach based on solving a Linear Complementarity Problem is discussed.
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  • 18
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    Theoretical and applied genetics 73 (1987), S. 883-892 
    ISSN: 1432-2242
    Keywords: Lens ; Isozymes ; Translocation break-point ; Linkage ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Segregation of 18 marker genes was monitored in selfed progeny of a Lens culinaris × L. ervoides hybrid; five linkage groups were mapped, one of which contained a reciprocal translocation break-point that differentiates between the parents. Four markers were found to be linked to the translocation break-point: Aco-1 and Pgm-2 on one side and Gs and Got-2 on the other. The gene pairs on both sides of the translocation are not linked in L. culinaris or in L. orientalis. The L. ervoides gene order was also found in L. odemensis but with significantly reduced map distances. Analysis of monogenic segregations in a number of Lens inter-specific crosses revealed some consistent patterns of deviations from the expected Mendelian ratios. The factors responsible for these unequal segregations, genotypic effects on recombination frequencies, negative interference, and the possible ancient origin of the translocation are discussed.
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  • 19
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    Theoretical and applied genetics 73 (1987), S. 675-682 
    ISSN: 1432-2242
    Keywords: Isozyme ; Genetic variability ; Evolution ; Rice ; Africa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Eight hundred and thirtyone traditional varieties of rice, Oryza sativa L., were collected in Africa and analysed for their isozymic variability on 15 enzymatic systems, representing 37 presumed loci. There appears to be a correlation between the type of rice growing and the two groups Indica and Japonica. The degree of genetic diversity is nearly equal in African rice and the Asian one. Alleles due to introgression or mutational events were identified. The results suggest that the evolution of O. sativa is continuous in Africa by means of inter-subspecific or inter-specific crosses.
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  • 20
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    Theoretical and applied genetics 74 (1987), S. 188-193 
    ISSN: 1432-2242
    Keywords: Isoenzymes ; Evolution ; Domestication ; Biological structure ; Genetic distances
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Polymorphism in twelve genes coding for eight enzymes in pearl millet (Pennisetum glaucum (L.) R. Br.): alcohol dehydrogenases (ADH), catalases (CAT), β-esterases (EST), glutamate oxaloacetate transaminases (GOT), malate dehydrogenases (MDH), 6-Phosphogluconate dehydrogenases (PGD), phosphoglucoisomerases (PGI) and phosphoglucomutases (PGM), was observed by electrophoresis on 74 cultivated samples and 8 wild samples from West Africa. Six genes: Est A, Adh A, Pgm A, Cat A, Pgi A, Pgd A contain 95% of the total variation. Principal component analyses and discriminant analyses of the 82 samples described by 46 allelic frequencies showed an almost complete separation into 3 groups: wilds, early maturing cultivars and late maturing cultivars. The early group has the highest enzyme diversity, with cultivated millets from Niger showing the most diversity. The high diversity of the early group and its extensive divergence from West-African wild millets suggest, firstly, the existence, elsewhere in Africa of other enzymatically different sources of wild millet, and secondly, the occurrence, prehistorically, of several different domestications. The late group of cultivars has the lowest variability and a relatively low coefficient of differentiation. This relatively homogeneous enzyme structure does not seem to be associated to ecology. A hypothesis is advanced suggesting that West African late-cultivars were derived from a common cultivated early complex. This complex must have been distributed across the Sudanian zone and must have been later sumitted to modifications by limited gene flow with local early maturing cultivars.
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  • 21
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    Theoretical and applied genetics 75 (1987), S. 138-143 
    ISSN: 1432-2242
    Keywords: Wheat ; Ribosomal RNA genes ; Synthetic tetraploids ; Evolution ; Nucleolar activity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The ribosomal RNA genes in the A genome of tetraploid (AABB) wheats are either absent or present at low levels. In four synthetic AABB tetraploids tested by in situ hybridization with a radioactive probe, the level of radioactive label at A and B NOR's corresponded to those of the parent species. There was no reduction after ten generations. In addition, the A chromosome rDNA is transcriptively active, the numbers of nucleoli being governed by the number of rRNA gene repeats in the smaller of the two A-genome NOR's. Since the wild tetraploid Triticum dicoccoides, as well as its domesticated derivatives, lack A-genome NOR's, their deletion is likely to have occurred prior to domestication, i.e. more than 10,000 years ago.
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  • 22
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    Molecular genetics and genomics 209 (1987), S. 203-205 
    ISSN: 1617-4623
    Keywords: Polymorphisms ; Genome structure ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Many cloned regions of the Drosophila genome show minimal variation between strains in overall sequence arrangement. While restriction site polymorphisms occur and the location of transposable elements may vary from one strain to another, such changes appear to be relatively minor variations, superimposed on overall genome stability. In contrast to this general situation, we describe here a segment of the X chromosome that is highly polymorphic in four strains of D. melanogaster and in D. simulans. The strains differ in the presence and extent of a short duplication and the presence of repetitive DNA. These results suggest that different regions of the genome may be subject to different evolutionary constraints, with some regions being particularly prone to extensive changes, even within a single species.
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  • 23
    ISSN: 1617-4623
    Keywords: Antibiotics ; Archaebacteria ; Ribosomes ; Evolution ; Thermoplasma
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The susceptibility of Thermoplasma acidophilum (an extremely acidophilic, moderately thermophilic, wall-less sulphur-oxidizing archaebacterium) to 50 ribosome-specific inhibitors of polypeptide elongation was surveyed using efficient poly(U)-and poly(UG)-directed cell-free systems and comparable reference systems derived from eubacterial (Bacillus stearothermophilus, Escherichia coli) and eukaryotic (Saccharomyces cerevisiae) species. Under optimum temperature (58° C) and ionic conditions for polypeptide synthesis Thermoplasma ribosomes are only sensitive to the 70 S/80 S ribosome-directed aminoglycoside neomycin, and to five 80 S ribosome-directed inhibitors all of which (α-sarcin, mitogillin, restrictocin, dianthin and gelonin) impair the functioning of the large (60 S) ribosomal subunit. Sensitivity of the three structurally related compounds α-sarcin, mitogillin and restrictocin and susceptibility to neomycin place Thermoplasma ribosomes between those of Sulfolobus solfataricus (only sensitive to α-sarcin) and Methanococcus vannielli (sensitive to α-sarcin, mitogillin, restrictocin and neomycin but also affected by a variety of 70 S ribosome-directed drugs). The phylogenetic significance of the greatly diversified antibiotic sensitivity spectra displayed by archaebacteria in general, as opposed to the uniform ones exhibited by eubacteria and eukaryotes, is discussed.
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  • 24
    ISSN: 1617-4623
    Keywords: TOL plasmid ; NAH plasmid ; Pseudomonas putida ; Catechol 2,3-dioxygenase ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary TOL plasmid pWW0 and plasmid NAH7 encode catabolic enzymes required for oxidative degradation of toluene and naphthalene, respectively. The gene order of the catabolic operon of NAH7 for salicylate oxidation was determined to be: promoter-nahG (the structural gene for salicylate hydroxylase)-nahH (catechol 2,3-dioxygenase)-nahI (hydroxymuconic semialdehyde dehydrogenase)-nahN (hydroxymuconic semialdehyde hydrolase)-nahL (2-oxopent-4-enoate hydratase). This order is identical to that of the isofunctional genes of TOL plasmid pWW0. The complete nucleotide sequence of nahH was determined and compared with that of xylE, the isofunctional gene of TOL plasmid pWW0. There were 20% and 16% differences in their nucleotide and amino acid sequences, respectively. The homology between the NAH7 and TOL pWW0 plasmids ends upstream of the Shine-Dalgarno sequences of nahH and xylE, but the homology continues downstream of these genes. This observation suggested that genes for the catechol oxidative enzymes of NAH7 and TOL pWW0 were derived from a common ancestral sequence which was transferred as a discrete segment of DNA between plasmids.
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  • 25
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    Molecular genetics and genomics 209 (1987), S. 374-381 
    ISSN: 1617-4623
    Keywords: Alcohol dehydrogenase ; Saccharomyces cerevisiae ; Zymomonas mobilis ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Insertion of the transposable element Ty at the ADH4 locus results in increased levels of a new alcohol dehydrogenase (ADH) activity in Saccharomyces cerevisiae. The DNA sequence of this locus has been determined. It contains a long open reading frame which is not homologous to the other ADH isozymes that have been characterized in S. cerevisiae nor does it show obvious homology to Drosophila ADH. The hypothetical ADH does, however, show strong homology to the sequence of an iron-activated ADH from the bacterium Zymomonas mobilis. Thus ADH4 appears to encode an ADH structural gene which, along with the Zymomonas enzyme, may define a new family of alcohol dehydrogenases.
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  • 26
    ISSN: 1615-6110
    Keywords: Angiosperms ; Asteraceae ; Ligularia calthifolia ; Araceae ; Acorus calamus ; Evolution ; phylogenetic trees ; 4.5 S rRNA ; 5 S rRNA ; chloroplasts
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Chloroplast 4.5 S rRNAs of the monocotAcorus calamus and the dicotLigularia calthifolia have been sequenced. Phylogenetic trees for the chloroplast 4.5 S and 5 S rRNAs and also for cytosol 5 S rRNAs have been constructed by several methods. They are compared with previous studies. Evidently, it is necessary to consider the inequality of nucleotide substitution rates in different lines for adequate phylogenetic reconstructions. Some relevant conclusions are presented. The possibilities and prospects for using data on low-molecular-weight rRNAs from cytosol and organelles for deducing phylogenetic relationships in plants are discussed.
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    Plant systematics and evolution 156 (1987), S. 151-157 
    ISSN: 1615-6110
    Keywords: Angiosperms ; Lythraceae ; Lythrum salicaria ; Evolution ; heterostyly ; pollen ; gender specialization
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Some of the factors governing seed-set in three populations ofLythrum salicaria are examined during two seasons. Plants spatially segregated from legitimate neighbours by distances exceeding 1m set few seeds. Plants with small inflorescences set fewer seeds than those with medium or large inflorescences. Flowers having self pollen applied to the stigma before legitimate pollination set fewer seed per flower than those pollinated with legitimate pollen only. Seeds of the mid-style morph germinated more effectively than those of the long style morph and seeds of the short-style morph showed very low levels of germination.
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    Plant ecology 68 (1987), S. 131-138 
    ISSN: 1573-5052
    Keywords: History of phytocoenology ; Paradigm ; Organismic concept ; Continuum concept ; Classification ; Evolution ; Succession
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Paradigm change (organismic-continuum) in Soviet phytocoenology occurred in the 1960s, though the idea of a continuum is well known in the Soviet Union since L. G. Ramensky's works, written at the beginning of our century. This change has been influenced by American continuum-ecologists from the Schools of J. T. Curtis and R. H. Whittaker. The organismic approach in Soviet phytocoenology has never had an extreme character, and for this reason paradigm change appeared gradually. The impact of vegetation classification on the paradigm succession is emphasized: whether an investigator admits ‘real’, discontinuous communities or considers them part of a continuum, in either case he must reduce continuity to discontinuity to achieve a classification. Nevertheless, the dominant classification systems typical of the organismic period in Soviet phytocoenology were mostly of an organismic character, because they were based on the idea of the organizing role of edificators-dominants in the community, rather than on environmental conditions. The classification system based on the Braun-Blanquet approach which is widely spreading now in the USSR corresponds better to the idea of a continuum, because the floristic-sociological classification criteria reflect habitat conditions, rather than coenotic interrelations. Organismic and continuum paradigms are compared according to ten principal aspects, the most important of which are: the nature of the plant community, estimation of population differences within a community, synmorphology, syndynamics and relation to the classification problem.
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    Plant ecology 70 (1987), S. 135-147 
    ISSN: 1573-5052
    Keywords: Biogeography ; Climate dynamics ; Community pattern ; Evolution ; Western North America
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract New methods of weather analysis accompanied by microhabitat ‘bioassays’ have been applied in several case studies to demonstrate effects of atmospheric processes on patterns of community composition and structure and potential species evolution. Average spatial and seasonal airmass dynamics which determine regional and elevational patterns of relative microhabitat favorability, were found to vary between a recent global warming trend (ca 1900 to 1940) and the subsequent global cooling trend (ca 1940 to 1970). These apparently systematic spatial and temporal shifts in weather were related to plant establishment patterns and community composition and structure. The proposed causal mechanisms function, in part, through regional shifts in microhabitat size. These effects are similar to larger scale, longer term shifts deduced from the late Quaternary fossil record. By modifying the spatial approach, month-to-month and year-to-year variability of weather has been examined for the last 130 years at individual points in southwestern North America. Three climatic regimes (the end of the Little Ice Age, the recent warming trend and the recent cooling trend) exhibited distinct year-to-year patterns of weather that can be related to the establishment of different kinds of plants (e.g., C4 grasses versus C3 shrubs). Oscillations between different temporal climatic regimes appear to promote the episodic establishment of different life forms, but not necessarily their local extinction. The two methods of weather analysis have been combined in a regional assessment of climatic controls of different biomes in space and time with a primary focus on the Chihuahuan desert. Natural ecotones between the Chihuahuan desert and neighboring biomes are clearly related to large scale airmass dynamics associated with seasonal oscillations in jetstream position. The weather patterns controlling ecotonal positions result from seasonal topographic influences on the general circulation of the atmosphere. The apparent stability of these patterns allows causal hypotheses of biogeographic dynamics and the evolution of physiological traits and life history characteristics.
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    Molecular genetics and genomics 209 (1987), S. 489-493 
    ISSN: 1617-4623
    Keywords: Endonuclease ; Immunity ; Lysis ; Signal peptide ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The primary structures of the immunity (Imm) and lysis (Lys) proteins, and the C-terminal 205 amino acid residues of colicin E8 were deduced from nucleotide sequencing of the 1,265 bp ClaI-PvuI DNA fragment of plasmid ColE8-J. The gene order is col-imm-lys confirming previous genetic data. A comparison of the colicin E8 peptide sequence with the available colicin E2-P9 sequence shows an identical receptor-binding domain but 20 amino acid replacements and a clustering of synonymous codon usage in the nuclease-active region. Sequence homology of the two colicins indicates that they are descended from a common ancestral gene and that colicin E8, like colicin E2, may also function as a DNA endonuclease. The native ColE8 imm (resident copy) is 258 bp long and is predicted to encode an acidic protein of 9,604 mol. wt. The six amino acid replacements between the resident imm and the previously reported non-resident copy of the ColE8 imm ([E8 imm]) found in the ribonuclease-producing ColE3-CA38 plasmid offer an explanation for the incomplete protection conferred by [E8 Imm] to exogenously added colicin E8. Except for one nucleotide and amino acid change in the putative signal peptide sequence, the ColE8 lys structure is identical to that present in ColE2-P9 and ColE3-CA38.
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    Environmental biology of fishes 19 (1987), S. 3-26 
    ISSN: 1573-5133
    Keywords: Captive propagation ; Extinction ; Genetic variability ; Evolution ; Speciation ; Lates niloticus ; Nile perch ; Haplochromines ; Tilapia ; Clupeids ; Oil pollution ; Productivity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Man has been associated with a variety of lakes throughout his evolutionary history in Africa. Lakeside dwellers have a close association with and understanding of these lakes. In the past four decades, however, overexploitation, introductions of alien fishes and the possibility of oil pollution present frightening prospects of irreversible losses and massive extinction. The development of scientific understanding of the life support processes, the ecosystems and the rich communities of these lakes has been so outpaced by exploitation and manipulations that accurate predictions regarding the future are impossible. Shallow lakes are more sensitive to physico-chemical changes caused by climatic as well as agricultural and industrial development than deep lakes, but their biotae are endowed with a resilience which facilitates recovery from major depletions to population size. In contrast, the speciose endemic cichlid faunae of deep lakes are sensitive to fishing pressure, are awkward to manage and should be regarded as representing a much smaller resource than initially imagined. The clupeids of Lake Tanganyika can sustain intensive fishing, but their introduction into other natural lakes is not recommended. Enormous changes to native faunae followed the introduction of Lates niloticus to lakes Kyoga and Victoria with dramatic consequences for the fisheries, for the socio-economic status of the region and for the maintenance of biotic diversity. Extinction of almost 300 fish species is a possible further consequence of L. niloticus predation. Intensive selective fishing for L. niloticus is being initiated, but is unlikely to resolve the problem. In the time necessary to substantially reduce L. niloticus, numerous endemic fishes may suffer extinction. A viable alternative to extinction of these species is captive propagation. Conservation of fishes by captive propagation is not a common or well documented practice. To encourage the acceptance of this conservation option a theoretical scenario in which the concepts and protocols are applied to the fishes of Lake Victoria is given. The possibility of returning rescued populations to the lake at a later date, assuming L. niloticus populations have been reduced, is also discussed. It is recommended that captive propagation should be practised to conserve species and to retain the option of returning rescued taxa. Scientists are urged to seek the funding to study tropical ecosystems so that conservation and rational development may acquire a sound foundation.
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    Human evolution 2 (1987), S. 445-457 
    ISSN: 1824-310X
    Keywords: Primates ; Chromosomes ; Fluorochromes ; Evolution ; Phylogeny ; Heterochromatin
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Recently, in addition to quinacrine staining, fluorochrome techniques have been developed which brilliantly stain other heterochromatic regions. Two of these staining techniques are Distamycin/DAPI (DA/DAPI) and D287/170. We stained the chromosomes of all species of great apes and 14 species of primates (48 individuals) using these three fluorochrome techniques. Only african apes and man show brilliant quinacrine staining while, man and all the great apes show brilliant DA/DAPI staining and only species belonging to the hominoidea (including the siamang) showed bright D287/170 staining. In the lower primates a medium level of DA/DAPI fluorescence was found in some species with large amount of pericentromeric heterochromatin. Brilliant DA/DAPI staining could represent a derived trait linking all great apes and humans, while D287/170 may link all hominoidea. Fluorochrome staining is believed to be correlated with some satellite DNA sequences. However, data available on the chromosome location of satellite DNAs in non-human primates were derived from buoyant density fractions resulting in cross hybridization and now are not considered reliable. Before making any correlation between fluorochrome staining and satellite DNAs in non human primates there is need of data onin situ hybridization with cloned DNA sequences on primate chromosomes. These data would help clarify the evolution and relationship of satellite DNAs and heterochromatin in primates.
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    Human evolution 2 (1987), S. 121-133 
    ISSN: 1824-310X
    Keywords: Apes ; Date Choice ; Evolution ; Foresight ; Plan ; Sense of Time ; Time Flow ; Time Projection
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract It is shown that in the evolution of man's «sense of time» the conceptDATE played an important role. Inthe first part of the paper, time concepts, such as present, period, duration, change and date, are related to each other in a conceptualstructure, which is represented bothgraphically and by means ofpropositions. That conceptual structure also illustrates the relationship of the concepts of time to theflow of time in theevolution of the cosmos and of life on earth. This flow of time is measured by means of the date concept. In thesecond part, the limited «sense of time» of apes is analyzed. The ability of apes to project their experiences intoforesights of the future is illustrated graphically in a conceptual structure. In thethird part, it is shown that man has the additional ability tochoose from such foresights aplan for the future. Plans are made by assigning a specificdate to future time. The relationship between foresights, plans and dates is also illustrated in a conceptual structure. Finally, thefourth part discusses how man's ability to assign dates to the flow of time evolved simultaneously with his hunting activities and with his faculty to communicate by means of language.
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    Human evolution 2 (1987), S. 517-537 
    ISSN: 1824-310X
    Keywords: Hominoid locomotion ; Evolution ; Locomotor patterns ; Ontogeny ; Monkeys ; Apes ; Miocene hominoids
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Evolution of hominoid locomotion is a traditional topic in primate evolution. Views have changed during the last decade because a number of crucial differences between early and advanced hominoid morphologies have been demonstrated. Increasing evidence on primate behaviour and ecology show that any direct analogies between living and fossil hominoids must be made extremely carefully. The necessity of synthesizing data on primate behaviour, locomotion, morphology and ecology and simultaneously defining the framework in which the data should be interpreted are explained. Results of our studies of ontogeny of locomotor and behavioural patterns (LBP) are presented that could help identify the main features of early hominoid locomotor patterns (LP) and the mechanisms of their changes. The early hominoid LP was different from those of pronograde monkeys and specialized antipronograde living apes. Some similar features could be expected between early hominoid LP and the LP of ceboid monkeys. Analogous mechanisms of change of LBP exist in all groups of living higher primates. Crucial early mechanisms of change are the ontogenetic shifts in LBP connected with ethoecological changes. Analysis of fossil evidence has shown that Miocene hominoids differ morphologically from any group of living primates. Certain features present in Miocene hominoids could be found in Atelinae and living Asian apes but they are limited to some functional regions of the postcrania only. Consequently the early hominoid general LP can not be strictly analogous either to that of any monkey group or to the LP of apes. We suppose that certain pronograde adaptations, such as climbing, bipedality, limited suspensory activity and sitting constituted the main part of their LP.
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