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  • 1
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    Bulletin of mathematical biology 29 (1967), S. 1-16 
    ISSN: 1522-9602
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Abstract A vast number of biologically important processes are based upon bimolecular systems. In these systems intermediate complexes are formed. Bimolecular systems in which no complex-complex interactions occur are called linear systems of complexes. A definition and some characteristic properties of these systems are given here. There may exist a contradiction of Onsager's principle of detailed balancing in these systems; however, no principal differences are found between the steady state behavior of an open system and that of a closed system. It is shown that the steady state behavior of a linear system of complexes of arbitrary complexity has some similarities with the steady state behavior of a simple bimolecular system, e.g., Michaelis-Menten enzymatic reaction. Multiplicity of action of the substances participating in biomolecular processes may produce some qualitative differences in the steady state behavior of the system.
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  • 2
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    Bulletin of mathematical biology 29 (1967), S. 17-32 
    ISSN: 1522-9602
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Abstract A time-dependent DNA histogram is calculated for an irradiated population of cells under the limiting assumption that the cells cannot pass through prophase due to the effects of the radiation. The population is assumed to increase exponentially prior to irradiation, but after irradiation to neither gain nor lose cells. Chromosome-number dispersion is taken into account in the calculation. The qualitative behavior of the calculated and experimental histograms are in reasonable agreement. The quantitative agreement between the two is relatively good at short post-irradiation times but is poor at long post-irradiation times (say, greater than half the doubling time). This suggests that recovery phenomena cannot be neglected at long post-irradiation times.
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    Bulletin of mathematical biology 29 (1967), S. 187-188 
    ISSN: 1522-9602
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    Topics: Biology , Mathematics
    Notes: Abstract It is pointed out that the three different stimuli for a corrective turn, namely the distance from the edge of the lane, the rate of approach to the edge, and the angle between the direction of the car and the direction of the lane (Bull. Math. Biophysics,28, 645–654, 1966,29, 181–186, 1967) may act all three simultaneously. It is found that in that case the tracking curve of the car is stable below a critical speed and becomes unstable above it.
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    Bulletin of mathematical biology 29 (1967), S. 181-186 
    ISSN: 1522-9602
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    Notes: Abstract Continuing a previous study (Bull. Math. Biophysics, 28, 645–654, 1966), the biophysical mechanism of a corrective turn is investigated for the case where the stimulus for the corrective turn is produced not only by the perception of the nearness of an edge of the lane, but also by the rate of approach of the car towards the edge. In that case it is found that the tracking curve of the car may consist of a series of damped sinusoids and safe driving would be possible at any speed if it were not for the endogenous fluctuation in the driver's central nervous system. If the effect of the rate of approach increases sufficiently rapidly as the distance to the edge of the lane decreases, then a stable undamped oscillating tracking curve is possible. The case is also studied where the driver makes a corrective turn in response to a direct perception of the angle between the direction of the lane and the longitudinal axis of the car.
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    Bulletin of mathematical biology 29 (1967), S. 245-259 
    ISSN: 1522-9602
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    Topics: Biology , Mathematics
    Notes: Abstract The principle of minimal work requires that the conducting airways of the human lung should have a maximum radius for minimal resistance to gas flow. At the same time there is a requirement that the airways should have a minimal volume for economy of space. These two opposing requirements have been investigated mathematically, and a method for calculating the angle of branching which produces minimal volume has been derived. The relationship of the radii of the parent and daughter branches to produce minimal resistance has been similarly defined. By measurement of a bronchial cast from a human lung the extent to which the predicted optimum structure is realized in practice has been shown. The change in structure associated with change of function at the transition from conducting airway to diffusion zone has been demonstrated.
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    Bulletin of mathematical biology 29 (1967), S. 191-206 
    ISSN: 1522-9602
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    Topics: Biology , Mathematics
    Notes: Abstract This paper considers a class of set-theoretical entities, calledn-rank Linnaean structures, which are intended as abstract models of the taxonomic classificatory systems of biology. In the first part, devoted to formalism, finite Linnaean structures are discussed in complete generality; but, in addition, eight distinct subclasses are noted and some of the properties of their elements are explored. In the second part, concerned with applications, it is shown that taxonomic systems may be recast in the form of finite Linnaean structures, and an effort is made to show that some undesirable features of earlier models are avoided without artificiality and without abandoning extensional mathematics.
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    Bulletin of mathematical biology 29 (1967), S. 207-216 
    ISSN: 1522-9602
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    Notes: Abstract Generalizing an idea of M. Richardson (Fundamentals of Mathematics, New York: Macmillan Co., 1958), an APS on a given populationP is a non-empty collection of non-empty subsets ofP such that ifA is in the collection andA⊆B, thenB is in the collection. From a structure of this kind a partial ordering ofP, called therelated bumping order, is derived. The question is raised as to what kinds of partial orderings can be so obtained. For structures determined by voting weights of the members of the population, a complete characterization of all possible bumping orders is obtained.
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    Bulletin of mathematical biology 29 (1967), S. 217-226 
    ISSN: 1522-9602
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    Notes: Abstract The “second method” of Liapunov is used to perform a stability analysis of a mathematical model of the neuron. This analysis is based on the hypothesis that the firing of the neuron coincides with a temporary state of instability of the system, and that the initiation of all-or-none process depends on the magnitude of membrane depolarization and its first time derivative. It is found that the stability (and hence the possibility of a second firing) is restored approximately when the rate of membrane repolarization is at a maximum. This result predicts that the duration of the period of absolute refractoriness in neurons would be about 75 per cent of the spike duration, and thus shorter than the value usually obtained from experimental measurements.
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    Bulletin of mathematical biology 29 (1967), S. 227-232 
    ISSN: 1522-9602
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    Notes: Abstract Some aspects of masking phenomena are considered in terms of the simplest possible model of two-factor neural elements. The effect of a number of variables can be accounted for, but the introduction of an internuncial element results in a masking function which need not be symmetric about zero delay interval. As an illustration, the results for a special case are compared with available data. In general, such a model results in a masking function which depends on the intensity, area, and duration of the stimuli, as well as on the temporal and spatial separation between them.
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    Bulletin of mathematical biology 29 (1967), S. 377-388 
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    Notes: Abstract The general equations are discussed describing two species in competition or in symbiosis or feeding one on the other.
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    Bulletin of mathematical biology 29 (1967), S. 403-404 
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    Bulletin of mathematical biology 29 (1967), S. 389-393 
    ISSN: 1522-9602
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    Notes: Abstract It is shown that the principle of biological epimorphism (Rashevsky,Mathematical Principles in Biology and Their Applications, Springfield, Ill.: Charles Thomas, 1960) is contained in the theory of organismic sets (Bull. Math. Biophysics,29, 139–152, 1967) if an additional postulate not directly connected to mappings is made.
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    Bulletin of mathematical biology 29 (1967), S. 407-407 
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  • 14
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    Bulletin of mathematical biology 29 (1967), S. 409-409 
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    Bulletin of mathematical biology 29 (1967), S. 605-613 
    ISSN: 1522-9602
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    Topics: Biology , Mathematics
    Notes: Abstract This paper deals with bimolecular systems in which also complex-complex interactions occur. Because of the complexity of the problem, an approximation in a form of coupled linear systems of complexes (Bull. Math. Biophysics,29, 1–16, 1967) is considered. Two types of couplings, serial and parallel, are studied. In the serial coupling the nonlinear system of complexes has the same behavior as its subsystems. An entity, initial sensitivity, has interesting properties: in serial coupling it is at most equal to the product and in parallel coupling, at most equal to the sum of partial initial sensitivities.
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    Bulletin of mathematical biology 29 (1967), S. 615-623 
    ISSN: 1522-9602
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    Topics: Biology , Mathematics
    Notes: Abstract Amplification effect in the catalytic bimolecular systems is a consequence of the kinetic characteristic of the catalyst. Two types of the coefficient of amplification are defined. The applicability of these definitions is given by the type of the bimolecular system. In a simple example it is shown that the concept of amplification is meaningful in these systems. Furthermore, two rules, analogous to those for a coupling of amplifiers, are derived for the two basic modes of coupling of catalytic systems. Thus, in biological systems the catalytic reactions may be regarded as biologically effective amplifiers.
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    Bulletin of mathematical biology 29 (1967), S. 583-596 
    ISSN: 1522-9602
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    Notes: Abstract It is postulated that cell hydration is governed by adsorption of water on cell proteins in accord with the Bradley adsorption isotherm, and that the action of a solute in the surrounding solution is to lower the vapor pressure of the solution so that cell water adsorption is decreased by moving down the Bradley isotherm. From these concepts, it is derived that cell volume (V) should be related to solute concentration (x) by the equationV=−E log10 x+F whereE andF are constants which are independent of type of solute. For a non-adsorbed solute this agrees well with experimental data. For solutes which are adsorbed by cell proteins, a correction in the above equation may be necessary at higher solute concentrations, which is shown to be compatible with various experimental data. The types of experiments which are generally used to support the osmotic pressure theory of cell hydration agree equally well with the adsorption theory. The virtue of the adsorption theory is that, unlike the osmotic pressure theory of cell swelling, it is compatible with permeability of the cell membrane to solutes, which has been experimentally observed for various solutes.
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    Bulletin of mathematical biology 29 (1967), S. 657-664 
    ISSN: 1522-9602
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    Notes: Abstract Conditions under which a time varying electromagnetic field problem (such as arises in electrophysiology, electrocardiography, etc.) can be reduced to the conventional quasistatic problem are summarized. These conditions are discussed for typical physiological parameters.
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  • 19
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    Bulletin of mathematical biology 29 (1967), S. 711-718 
    ISSN: 1522-9602
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    Notes: Abstract A compartmental lung model with any number of synchronously filling and emptying functional chambers and a common dead space or conducting region is considered. It is shown that the model gives rise to an output, in an open circuit washout determination, which is a weighted sum of exponentials. From estimates of these weights and exponential components, estimates of the model parameters can be recovered. Relations giving the unique correspondence between the output parameters and the model parameters are derived and the existence and uniqueness of solutions established.
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    Bulletin of mathematical biology 29 (1967), S. 677-690 
    ISSN: 1522-9602
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    Notes: Abstract A physical model that incorporates all the experimental information on the formation of the visual pigment rhodopsin is presented. The visual pigments consist of a chromophore bound to an appropriate protein. Thus rhodopsin (λm 505 mμ) is formed by a Schiff’s base linkage C19H27CH=NH+-opsin (λm 440 mμ) between 11-cis retinal (λm 380 mμ) and the protein opsin (λm 280 mμ). It is found that there exists a red shift in the spectrum of rhodopsin from the Schiff’s base. The model brings an explanation for this red shift. It is shown that such a shift may be due to a charge transfer process (R. S. Mulliken,J. Am. Chem. Soc.,74, 811–824, 1952) between an electron at the double bond of carbons C11−C12 and an atomic orbital of the sulphur present in cysteine. This provides an explanation of the presence of SH-groups in the protein after the absorption of light. A one-electron approximation is used and the dipole momentμ NV ; hence, the oscillator strengthf of the transitionNV is estimated and compared with the experimentally determined extinction coefficient ∈m by mixing 3.5×10−3 M of 11-cis retinal with 8.3×10−5 M of cysteine at pH ranges 6 through 8. Reasonable agreement is found. Solvent, concentration and temperature dependence are shown also.
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    Bulletin of mathematical biology 29 (1967), S. 841-862 
    ISSN: 1522-9602
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    Notes: Abstract By assigning coordinates to the environmental function space comprising all physical and mental stimuli, mathematical interpretations can be based on such terms as adaptability, and reactivity which relate to individuals interacting with their environment within a society. These psychometric concepts are incorporated into a framework of functional analysis, which permits the optimization of social change by maximizing the satisfaction integral through the use of variational or dynamic programming methods in conjunction with some optimal social policy. The approach provides a mathematical connection between psychology and sociology, and further demonstrates that existing forms of government are simulated by differential equations belonging to the same general class. The synthesis of new classes of functional equations describing social progress is visualized as a legitimate objective for abstract mathematical sociology.
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    Bulletin of mathematical biology 29 (1967), S. 863-877 
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    Notes: Abstract The theory of imitative behavior as developed hitherto by the author was based on the assumption that each individual has a natural preference for one of the two mutually exclusive behaviors. The endogenous fluctuations in the central nervous system then result in the individual’s exhibiting the two behaviors alternately with a relative frequency determined by the natural preference. Imitation shifts the natural preference towards one or the other of the two mutually exclusive behaviors. In the present approach it is suggested that the relative frequency of the two mutually exclusive behaviors exhibited alternately is determined by maximizing the “satisfaction function” of the individual, that is by hedonistic factors rather than by purely random fluctuations. Corresponding equations are developed. It is shown that in certain cases, even when the imitation effect is absent, a sort of “pseudoimitation” may occur. Another situation leads, in the case of two individuals only, to a complete “division of labor” between them, with respect to the two behaviors. Each one exhibits only one behavior. After that imitation is introduced explicitly by assuming that imitation by one individual or another increases the satisfaction function of the imitating individual. Results thus obtained show similarities to the results of the old theory.
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    Bulletin of mathematical biology 61 (1999), S. 1-17 
    ISSN: 1522-9602
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    Notes: Abstract An equivalent electrical circuit is given for a branch of an amphibian motor-nerve terminal in a volume conductor. The circuit allows for longitudinal current flow inside the axon as well as between the axon and its Schwann cell sheath, and also for the radial leakage of current through the Schwann cell sheath. Analytical and numerical solutions are found for the spatial and time dependence of the membrane potential resulting from the injection of depolarizing current pulses by external electrodes at one or two separate locations on the terminal. These solutions show that the depolarization at an injection site can cause a hyperpolarization at sites a short distance away. This effect becomes more pronounced in a short terminal with sealed-end boundary conditions. The hyperpolarization provides a possible explanation for recent experimental results, which show that the average quantal release due to a test depolarizing current pulse delivered by an electrode at one site on a nerve terminal is reduced by the application of an identical conditioning pulse at a neighbouring site.
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    Bulletin of mathematical biology 61 (1999), S. 113-140 
    ISSN: 1522-9602
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    Notes: Abstract Synthetic barriers such as gloves, condoms and masks are widely used in efforts to prevent disease transmission. Due to manufacturing defects, tears arising during use, or material porosity, there is inevitably a risk associated with use of these barriers. An understanding of virus transport through the relevant passageways would be valuable in quantifying the risk. However, experimental investigations involving such passageways are difficult to perform, owing to the small dimensions involved. This paper presents a mathematical model for analyzing and predicting virus transport through barriers. The model incorporates a mathematical description of the mechanisms of virus transport, which include carrier-fluid flow, Brownian motion, and attraction or repulsion via virus-barrier interaction forces. The critical element of the model is the empirically determined rate constant characterizing the interaction force between the virus and the barrier. Once the model has been calibrated through specification of the rate constant, it can predict virus concentration under a wide variety of conditions. The experiments used to calibrate the model are described, and the rate constants are given for four bacterial viruses interacting with a latex membrane in saline. Rate constants were also determined for different carrier-fluid salinities, and the salt concentration was found to have a pronounced effect. Validation experiments employing laser-drilled pores in condoms were also performed to test the calibrated model. Model predictions of amount of transmitted virus through the drilled holes agreed well with measured values. Calculations using determined rate constants show that the model can help identify situations where barrier-integrity tests could significantly underestimate the risk associated with barrier use.
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    Bulletin of mathematical biology 61 (1999), S. 221-238 
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    Notes: Abstract Evaluation of the fluid flow pattern in a non-pregnant uterus is important for understanding embryo transport in the uterus. Fertilization occurs in the fallopian tube and the embryo (fertilized ovum) enters the uterine cavity within 3 days of ovulation. In the uterus, the embryo is conveyed by the uterine fluid for another 3 to 4 days to a successful implantation site at the upper part of the uterus. Fluid movements within the uterus may be induced by several mechanisms, but they seem to be dominated by myometrial contractions. Intra-uterine fluid transport in a sagittal cross-section of the uterus was simulated by a model of wall-induced fluid motion within a two-dimensional channel. The time-dependent fluid pattern was studied by employing the lubrication theory. A comprehensive analysis of peristaltic transport resulting from symmetric and asymmetric contractions is presented for various displacement waves on the channel walls. The results provide information on the flow field and possible trajectories by which an embryo may be transported before implantation at the uterine wall.
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    Bulletin of mathematical biology 61 (1999), S. 379-398 
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    Notes: Abstract A mechanistically based mathematical model is used to investigate some of the important factors in priming hepatocytes to enter the G1 phase of the cell cycle. The model considers all of the relevant biochemical mechanisms from signal-receptor binding to the elevation of AP-1(activation protein transcription factor) levels. Focus is centered on the chain of biochemical events governing the sequential activation of protein kinase C (PKC), mitogen-activated protein kinase (MAPK) and AP-1. Factors such as amplitude and duration of growth factors signals, the kinetics of guanosine diphosphate (GDP) to guanosine triphosphate (GTP) conversion, and the negative feedback control mechanisms governing initial steps in cellular replication were theoretically examined. The results of our theoretical assessments support the finding that specific mutations along the PKC-AP1 pathways can have a critical effect on the rate at which cells enter the division cycle.
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    Bulletin of mathematical biology 61 (1999), S. 273-301 
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    Notes: Abstract Normal cardiac muscle contraction occurs in response to a rapid rise followed by a slower decay in intracellular calcium concentration. When cardiac muscle cells are loaded with calcium, an intracellular store releases calcium into the cytosol by the process of calcium-induced calcium release (CICR). This release contributes to the rise in intracellular calcium which in turn triggers contraction. We use two qualitative piecewise linear reaction-diffusion models of this behaviour to investigate the speed, stability and waveform of plane waves using singular perturbation techniques.
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    Bulletin of mathematical biology 61 (1999), S. 365-377 
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    Notes: Abstract Properties of two of the stochastic circulatory models theoretically introduced by Smith et al., 1997, Bull. Math. Biol. 59, 1–22 were investigated. The models assumed the gamma distribution of the cycle time under either the geometric or Poisson elimination scheme. The reason for selecting these models was the fact that the probability density functions of the residence time of these models are formally similar to those of the Bateman and gamma-like function models, i.e., the two common deterministic models. Using published data, the analytical forms of the probability density functions of the residence time and the distributions of the simulated values of the residence time were determined on the basis of the deterministic models and the stochastic circulatory models, respectively. The Kolmogorov-Smirnov test revealed that even for 1000 xenobiotic particles, i.e., a relatively small number if the particles imply drug molecules, the probability density functions of the residence time based on the deterministic models closely matched the distributions of the simulated values of the residence time obtained on the basis of the stochastic circulatory models, provided that parameters of the latter models fulfilled selected conditions.
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    Bulletin of mathematical biology 61 (1999), S. 19-32 
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    Notes: Abstract Ratio-dependent predator-prey models set up a challenging issue regarding their dynamics near the origin. This is due to the fact that such models are undefined at (0, 0). We study the analytical behavior at (0, 0) for a common ratio-dependent model and demonstrate that this equilibrium can be either a saddle point or an attractor for certain trajectories. This fact has important implications concerning the global behavior of the model, for example regarding the existence of stable limit cycles. Then, we prove formally, for a general class of ratio-dependent models, that (0, 0) has its own basin of attraction in phase space, even when there exists a non-trivial stable or unstable equilibrium. Therefore, these models have no pathological dynamics on the axes and at the origin, contrary to what has been stated by some authors. Finally, we relate these findings to some published empirical results.
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    Bulletin of mathematical biology 61 (1999), S. 157-177 
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    Notes: Abstract We explore the behavior of richly connected inhibitory neural networks under parameter changes that correspond to weakening of synaptic efficacies between network units, and show that transitions from irregular to periodic dynamics are common in such systems. The weakening of these connections leads to a reduction in the number of units that effectively drive the dynamics and thus to simpler behavior. We hypothesize that the multiple interconnecting loops of the brain’s motor circuitry, which involve many inhibitory connections, exhibit such transitions. Normal physiological tremor is irregular while other forms of tremor show more regular oscillations. Tremor in Parkinson’s disease, for example, stems from weakened synaptic efficacies of dopaminergic neurons in the nigro-striatal pathway, as in our general model. The multiplicity of structures involved in the production of symptoms in Parkinson’s disease and the reversibility of symptoms by pharmacological and surgical manipulation of connection parameters suggest that such a neural network model is appropriate. Furthermore, fixed points that can occur in the network models are suggestive of akinesia in Parkinson’s disease. This model is consistent with the view that normal physiological systems can be regulated by robust and richly connected feedback networks with complex dynamics, and that loss of complexity in the feedback structure due to disease leads to more orderly behavior.
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    Bulletin of mathematical biology 61 (1999), S. 987-1008 
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    Notes: Abstract Determining molecular structure from interatomic distances is an important and challenging problem. Given a molecule with n atoms, lower and upper bounds on interatomic distances can usually be obtained only for a small subset of the $$\frac{{n(n - 1)}}{2}$$ atom pairs, using NMR. Given the bounds so obtained on the distances between some of the atom pairs, it is often useful to compute tighter bounds on all the $$\frac{{n(n - 1)}}{2}$$ pairwise distances. This process is referred to as bound smoothing. The initial lower and upper bounds for the pairwise distances not measured are usually assumed to be 0 and ∞. One method for bound smoothing is to use the limits imposed by the triangle inequality. The distance bounds so obtained can often be tightened further by applying the tetrangle inequality—the limits imposed on the six pairwise distances among a set of four atoms (instead of three for the triangle inequalities). The tetrangle inequality is expressed by the Cayley—Menger determinants. For every quadruple of atoms, each pass of the tetrangle inequality bound smoothing procedure finds upper and lower limits on each of the six distances in the quadruple. Applying the tetrangle inequalities to each of the ( 4 n ) quadruples requires O(n 4) time. Here, we propose a parallel algorithm for bound smoothing employing the tetrangle inequality. Each pass of our algorithm requires O(n 3 log n) time on a CREW PRAM (Concurrent Read Exclusive Write Parallel Random Access Machine) with $$O\left( {\frac{n}{{\log n}}} \right)$$ processors. An implementation of this parallel algorithm on the Intel Paragon XP/S and its performance are also discussed.
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    Notes: Abstract We observed that amphiphile-induced microexovesicles may be spherical or cylindrical, depending on the species of the added amphiphile. The spherical microexovesicle corresponds to an extreme local difference between the two monolayer areas of the membrane segment with a fixed area, while the cylindrical microexovesicle corresponds to an extreme local area difference if the area of the budding segment is increased due to lateral influx of anisotropic membrane constituents. Protein analysis showed that both types of vesicles are highly depleted in the membrane skeleton. It is suggested that a partial detachment of the skeleton in the budding region is favoured due to accumulated skeleton shear deformations in this region.
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    Bulletin of mathematical biology 61 (1999), S. 1209-1210 
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    Bulletin of mathematical biology 61 (1999), S. 1187-1207 
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    Notes: Abstract The possibility of chaos control in biological systems has been stimulated by recent advances in the study of heart and brain tissue dynamics. More recently, some authors have conjectured that such a method might be applied to population dynamics and even play a nontrivial evolutionary role in ecology. In this paper we explore this idea by means of both mathematical and individual-based simulation models. Because of the intrinsic noise linked to individual behavior, controlling a noisy system becomes more difficult but, as shown here, it is a feasible task allowed to be experimentally tested.
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    Bulletin of mathematical biology 61 (1999), S. 573-595 
    ISSN: 1522-9602
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    Notes: Abstract In an attempt to improve the understanding of complex metabolic dynamic phenomena, we have analysed several ‘metabolic networks’, dynamical systems which, under a single formulation, take into account the activity of several catalytic dissipative structures, interconnected by substrate fluxes and regulatory signals. These metabolic networks exhibit a rich variety of self-organized dynamic patterns, with e.g., phase transitions emerging in the whole activity of each network. We apply Hurst’s R/S analysis to several time series generated by these metabolic networks, and measure Hurst exponents H 〈 0.5 in most cases. This value of H, indicative of antipersistent processes, is detected at very high significance levels, estimated with detailed Monte Carlo simulations. These results show clearly the considered type of metabolic networks exhibit long-term memory phenomena.
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    Bulletin of mathematical biology 61 (1999), S. 597-600 
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    Bulletin of mathematical biology 61 (1999), S. 437-467 
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    Notes: Abstract The secondary structures of nucleic acids form a particularly important class of contact structures. Many important RNA molecules, however, contain pseudo-knots, a structural feature that is excluded explicitly from the conventional definition of secondary structures. We propose here a generalization of secondary structures incorporating ‘non-nested’ pseudo-knots, which we call bi-secondary structures, and discuss measures for the complexity of more general contact structures based on their graph-theoretical properties. Bi-secondary structures are planar trivalent graphs that are characterized by special embedding properties. We derive exact upper bounds on their number (as a function of the chain length n) implying that there are fewer different structures than sequences. Computational results show that the number of bi-secondary structures grows approximately like 2.35n. Numerical studies based on kinetic folding and a simple extension of the standard energy model show that the global features of the sequence-structure map of RNA do not change when pseudo-knots are introduced into the secondary structure picture. We find a large fraction of neutral mutations and, in particular, networks of sequences that fold into the same shape. These neutral networks percolate through the entire sequence space.
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    Bulletin of mathematical biology 61 (1999), S. 683-700 
    ISSN: 1522-9602
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    Notes: Abstract A braced framework of tubular struts, in the walls and air spaces of frog lungs, suspends the respiratory surface and holds the lung open at zero transmural pressure withstanding imploding forces created by abdominal viscera, much as would the supports of a bell tent. The struts are tubes, having a larger second moment of area than do solid struts of the same cross-sectional area, and so are stronger, and contain pulmonary vessels within a flexible wall. The orthogonal arrangement of the struts in the framework, explained in part by Maxwell’s Lemma and Michell’s Theorem, strengthens the framework and minimizes its weight; orthogonality is maintained as the lungs change size. A model is presented, in which a frog might control pre-and post-pulmonary vascular resistances and, hence, blood volume in the struts, without compromising pulmonary perfusion. Such adjustments could vary the area of lung and the extent of perfused capillaries exposed to pulmonary gas, helping match the lung’s surface area, weight and metabolic load to activity.
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    Notes: Abstract A molecular-level theory is constructed for the control of fast neurotransmitter release, based on recent experimental findings that depolarization shifts presynaptic autoreceptors to a low affinity state and that an autoreceptor must be bound to a transmitter before it can become associated with the exocytotic apparatus. It is assumed that such an association blocks release; experimental support for this assumption is cited. The theory provides mechanisms for key experimental results concerning the essence of the matter, what controls the time course of evoked release? The same general model can account for both evoked and spontaneous release. The new theory can be regarded as a molecular implementation of the (phenomenological) calcium-voltage hypothesis that was suggested earlier.
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    Bulletin of mathematical biology 61 (1999), S. 799-805 
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    Bulletin of mathematical biology 61 (1999), S. 625-649 
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    Notes: Abstract We have developed cellular automaton models for two species competing in a patchy environment. We have modeled three common types of competition: facilitation (in which the winning species can colonize only after the losing species has arrived) inhibition (in which either species is able to prevent the other from colonizing) and tolerance (in which the species most tolerant of reduced resource levels wins). The state of a patch is defined by the presence or absence of each species. State transition probabilities are determined by rates of disturbance, competitive exclusion, and colonization. Colonization is restricted to neighboring patches. In all three models, disturbance permits regional persistence of species that are excluded by competition locally. Persistence, and hence diversity, is maximized at intermediate disturbance frequencies. If disturbance and dispersal rates are sufficiently high, the inferior competitor need not have a dispersal advantage to persist. Using a new method for measuring the spatial patterns of nominal data, we show that none of these competition models generates patchiness at equilibrium. In the inhibition model, however, transient patchiness decays very slowly. We compare the cellular automaton models to the corresponding mean-field patch-occupancy models, in which colonization is not restricted to neighboring patches and depends on spatially averaged species frequencies. The patch-occupancy model does an excellent job of predicting the equilibrium frequencies of the species and the conditions required for coexistence, but not of predicting transient behavior.
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    Bulletin of mathematical biology 61 (1999), S. 1093-1120 
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    Notes: Abstract We investigate the sequence of patterns generated by a reaction—diffusion system on a growing domain. We derive a general evolution equation to incorporate domain growth in reaction—diffusion models and consider the case of slow and isotropic domain growth in one spatial dimension. We use a self-similarity argument to predict a frequency-doubling sequence of patterns for exponential domain growth and we find numerically that frequency-doubling is realized for a finite range of exponential growth rate. We consider pattern formation under different forms for the growth and show that in one dimension domain growth may be a mechanism for increased robustness of pattern formation.
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    Bulletin of mathematical biology 61 (1999), S. 1151-1186 
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    Notes: Abstract The persistence of linear dominance hierarchies is often attributed to higher probabilities of a win after a win or a loss after a loss in agonistic interactions, yet there has been no theory on the evolution of such prior-experience effects. Here an analytic model, based on the idea that contests are determined by subjective perceptions of resource-holding potential (RHP) which animals may revise in the light of experience, demonstrates that winner and loser effects can evolve through round-robin competition among triads of animals drawn randomly from their population, and that the probability of a hierarchy increases with the strength of the combined effect. The effects are pure, in the sense that a contestant observes neither its own RHP nor its opponent’s RHP or RHP perception or win—loss record; and so the strength of an effect is unmodified by the RHPs of particular individuals, but depends on the distribution of RHP among the population at large. The greater the difference between an individual’s and its opponent’s RHP perception, the more likely it is to win a contest; however, if it overestimates its RHP, then the cost of fighting increases with the overestimate. A winner or loser effect exists only if the fitness gain of the beta individual in a hierarchy, relative to that of the alpha, is less than 0.5. Then a loser effect can exist alone, or it can coexist with a winner effect; however, there cannot exist a winner effect without a loser effect.
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    Bulletin of mathematical biology 61 (1999), S. 1121-1149 
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    Notes: Abstract Mathematical models predict that a population which oscillates in the absence of time-dependent factors can develop multiple attracting final states in the advent of periodic forcing. A periodically-forced, stage-structured mathematical model predicted the transient and asymptotic behaviors of Tribolium (flour beetle) populations cultured in periodic habitats of fluctuating flour volume. Predictions included multiple (2-cycle) attractors, resonance and attenuation phenomena, and saddle influences. Stochasticity, combined with the deterministic effects of an unstable ’saddle cycle’ separating the two stable cycles, is used to explain the observed transients and final states of the experimental cultures. In experimental regimes containing multiple attractors, the presence of unstable invariant sets, as well as stochasticity and the nature, location, and size of basins of attraction, are all central to the interpretation of data.
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    The journal of Fourier analysis and applications 5 (1999), S. 1-19 
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    Keywords: Primary: 42A20 ; Secondary 42C20 ; divergence of Fourier series ; rearrangement of Fourier series
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    Notes: Abstract There exists a continuous function whose Fourier sum, when taken in decreasing order of magnitude of the coefficients, diverges unboundedly almost everywhere.
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    The journal of Fourier analysis and applications 5 (1999), S. 73-85 
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    Keywords: 42C10 ; 46B15 ; 46E30 ; Wavelet ; unimodular wavelet ; unconditional basis
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    Notes: Abstract We present weak sufficient conditions for decay of a wavelet so that the wavelet basis is an unconditional basis in Lp(ℝ), 1 〈p 〈 ∞. We also prove that some unimodular wavelets yield unconditional bases in Lp(ℝ).
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    The journal of Fourier analysis and applications 5 (1999), S. 87-104 
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    Keywords: 42C15 ; 46E35 ; 42B30 ; refinable distribution ; Triebel-Lizorkin space ; Besov space ; multiresolution ; wavelet ; joint spectral radius
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    Notes: Abstract The aim of this article is to characterize compactly supported refinable distributions in Triebel-Lizorkin spaces and Besov spaces by projection operators on certain wavelet space and by some operators on a finitely dimensional space.
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    The journal of Fourier analysis and applications 5 (1999), S. 21-44 
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    Keywords: 42B99 ; 47B35 ; 15A54 ; 60G35 ; Positive extensions ; Toeplitz operators ; matrix functions on bitorus ; Wiener algebra ; band method ; entropy ; almost periodic functions ; ARMA processes
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    Notes: Abstract Let S be a band in Z2 bordered by two parallel lines that are of equal distance to the origin. Given a positive definite ℓ1 sequence of matrices {cj}j∈S we prove that there is a positive definite matrix function f in the Wiener algebra on the bitorus such that the Fourier coefficients $$\widehat{f(k)}$$ equal ck for k ∈ S. A parameterization is obtained for the set of all positive extensions f of {cj}j∈S. We also prove that among all matrix functions with these properties, there exists a distinguished one that maximizes the entropy. A formula is given for this distinguished matrix function. The results are interpreted in the context of spectral estimation of ARMA processes.
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    The journal of Fourier analysis and applications 5 (1999), S. 67-71 
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    Keywords: 42C15 ; Frame ; Frame sequence ; Fourier frame
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    Notes: Abstract Given a real sequence {λn}n∈ℤ. Suppose that $$\left\{ {e^{i\lambda _n x} } \right\}_{n \in \mathbb{Z}}$$ is a frame for L2[−π, π] with bounds A, B. The problem is to find a positive constant L such that for any real sequence {μn}n∈ℤ with ¦μn −λn¦ ≤δ 〈L, $$\left\{ {e^{i\mu _n x} } \right\}_{n \in \mathbb{Z}}$$ is also a frame for L2[−π, π]. Balan [1] obtained $$L_R = \tfrac{1}{4} - \tfrac{1}{\pi }$$ arcsin $$\left( {\tfrac{1}{{\sqrt 2 }}\left( {1 - \sqrt {\tfrac{A}{B}} } \right)} \right)$$ . This value is a good stability bound of Fourier frames because it covers Kadec's 1/4-theorem $$\left( {L_R = \tfrac{1}{4}ifA = B} \right)$$ and is better than $$L_{DS} = \tfrac{1}{\pi }\ln \left( {1 + \sqrt {\tfrac{A}{B}} } \right)$$ (see Duffin and Schaefer [3]). In this paper, a sharper estimate is given.
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    The journal of Fourier analysis and applications 5 (1999), S. 105-125 
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    Keywords: 26B05 ; 42B10 ; 42C99 ; frame ; Gabor system ; Riesz basis ; stability ; wavelet
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    Notes: Abstract If the sequence of functions ϕj, k is a wavelet frame (Riesz basis) or Gabor frame (Riesz basis), we obtain its perturbation system ψj,k which is still a frame (Riesz basis) under very mild conditions. For example, we do not need to know that the support of ϕ or ψ $$(\hat \phi or\hat \psi )$$ is compact as in [14]. We also discuss the stability of irregular sampling problems. In order to arrive at some of our results, we set up a general multivariate version of Littlewood-Paley type inequality which was originally considered by Lemarié and Meyer [17], then by Chui and Shi [9], and Long [16].
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    The journal of Fourier analysis and applications 5 (1999), S. 185-192 
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    Keywords: 42C15 ; 30A10 ; 94A12 ; lower bound ; exponential frame ; sine-type-function ; irregular sampling
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    Notes: Abstract Lower frame bounds for sequences of exponentials are obtained in a special version of Avdonin's theorem on “1/4 in the mean” [1] and in a theorem of Duffin and Schaeffer [4].
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    The journal of Fourier analysis and applications 5 (1999), S. 303-308 
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    Keywords: 42B20 ; 42B30 ; Hardy spaces ; Calderon-Zygmund singular integral operator ; multipliers
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    Notes: Abstract Calderón-Zygmund singular integral operators have been extensively studied for almost half a century. This paper provides a context for and proof of the following result: If a Calderón-Zygmund convolution singular integral operator is bounded on the Hardy space H1 (Rn), then the homogeneous of degree zero kernel is in the Hardy space H1(Sn−1) on the sphere.
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    The journal of Fourier analysis and applications 5 (1999), S. 285-302 
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    Keywords: 42C05 ; 22D25 ; 46L55 ; 47C05 ; spectral pair ; translations ; tilings ; Fourier basis ; operator extensions ; induced representations ; spectral resolution ; Hilbert space
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    Notes: Abstract Let Ω ⊂ℝd have finite positive Lebesgue measure, and let $$\mathcal{L}^2$$ (Ω) be the corresponding Hilbert space of $$\mathcal{L}^2$$ -functions on Ω. We shall consider the exponential functionse λ on Ω given bye λ(x)=e i2πλ·x . If these functions form an orthogonal basis for $$\mathcal{L}^2$$ (Ω), when λ ranges over some subset Λ in ℝ d , then we say that (Ω, Λ) is a spectral pair, and that Λ is a spectrum. We conjecture that (Ω, Λ) is a spectral pair if and only if the translates of some set Ω′ by the vectors of Λ tile ℝd. In the special case of Ω=Id, the d-dimensional unit cube, we prove this conjecture, with Ω′=Id, for d≤3, describing all the tilings by Id, and for all d when Λ is a discrete periodic set. In an appendix we generalize the notion of spectral pair to measures on a locally compact abelian group and its dual.
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    The journal of Fourier analysis and applications 5 (1999), S. 355-362 
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    Keywords: 28A80 ; 42B10 ; 60G57 ; random self-similar measures ; Fourier dimension ; Salem sets
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    Notes: Abstract In this paper we investigate the pointwise Fourier decay of some selfsimilar random measures. As an application we construct statistically selfsimilar Salem sets. For example, our result shows that a “slight” random perturbation of the classical Cantor set becomes a “nice” set in the sense that its Fourier dimension equals its Hausdorff dimension.
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    The journal of Fourier analysis and applications 5 (1999), S. v 
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    The journal of Fourier analysis and applications 5 (1999), S. 409-419 
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    Keywords: Weyl-Heisenberg frame ; Zak transform ; polynomial matrix ; 42C15
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    Notes: Abstract In this note we consider continuous-time Weyl-Heisenberg (Gabor) frame expansions with rational oversampling. We present a necessary and sufficient condition on a compactly supported function g(t) generating a Weyl-Heisenberg frame for L2 (ℝ) for its minimal dual (Wexler-Razdual) γ0 (t) to be compactly supported. We furthermore provide a necessary and sufficient condition for a band-limited function g(t) generating a Weyl-Heisenberg frame for L2 (ℝ) to have a band-limited minimal dual γ0 (t). As a consequence of these conditions, we show that in the cases of integer oversampling and critical sampling a compactly supported (band-limited) g(t) has a compactly supported (band-limited) minimal dual γ0(t) if and only if the Weyl-Heisenberg frame operator is a multiplication operator in the time (frequency) domain. Our proofs rely on the Zak transform, on the Zibulski-Zeevi representation of the Weyl-Heisenberg frame operator, and on the theory of polynomial matrices.
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    The journal of Fourier analysis and applications 5 (1999), S. 521-522 
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    Transformation groups 4 (1999), S. 127-156 
    ISSN: 1531-586X
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    Notes: Abstract We obtain a criterion for rational smoothness of an algebraic variety with a torus action, with applications to orbit closures in flag varieties, and to closures of double classes in regular group completions.
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    Transformation groups 4 (1999), S. 157-218 
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    Notes: Abstract We present a formalization, using data uniquely defined at the level of the Weyl group, of the construction and combinatorial properties of unipotent character sheaves and unipotent characters for reductive algebraic groups over an algebraic closure of a finite field. This formalization extends to the case where the Weyl group is replaced by a complex reflection group, and in many cases we get families of unipotent characters for a mysterious object, a kind of reductive algebraic group with a nonreal Weyl group, the “spets”. In this first part, we present the general results about complex reflection groups, their associated braid groups and Hecke algebras, which will be needed later on for properties of “spetses”. Not all irreducible complex reflection groups will give rise to a spets (the ones which do so are called “spetsial”), but all of them afford properties which already allow us to generalize many of the notions attached to the Weyl groups through the approach of “generic groups” (see [BMM1]).
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    Transformation groups 4 (1999), S. 355-374 
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    Notes: Abstract For the flag manifoldX=G/B of a complex semi-simple Lie groupG, we make connections between the Kostant harmonic forms onG/B and the geometry of the Bruhat Poisson structure. We show that on each Schubert cell, the corresponding Kostant harmonic form can be described using only data coming from the Bruhat Poisson structure. We do this by using an explicit set of coordinates on the Schubert cell.
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    The journal of Fourier analysis and applications 5 (1999), S. 45-66 
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    Keywords: 42B25 ; Fractional maximal operator ; weighted norm inequalities
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    Notes: Abstract For 0 ≤α 〈 ∞ let Tαf denote one of the operators $$M_{\alpha ,0} f(x) = \mathop {\sup }\limits_{I \mathrel\backepsilon x} \left| I \right|^\alpha \exp \left( {\frac{1}{{\left| I \right|}}\int_I {\log \left| f \right|} } \right),M_{\alpha ,0}^* f(x) = \mathop {\lim }\limits_{r \searrow 0} \mathop {\sup }\limits_{I \mathrel\backepsilon x} \left| I \right|^\alpha \left( {\frac{1}{{\left| I \right|}}\int_I {\left| f \right|^r } } \right)^{{1 \mathord{\left/ {\vphantom {1 r}} \right. \kern-\nulldelimiterspace} r}} .$$ We characterize the pairs of weights (u, v) for which Tα is a bounded operator from Lp(v) to Lq(u), 0 〈p ≤q 〈 ∞. This extends to α 〉 0 the norm inequalities for α=0 in [4, 16]. As an application we give lower bounds for convolutions ϕ ⋆ f, where ϕ is a radially decreasing function.
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    The journal of Fourier analysis and applications 5 (1999), S. 193-201 
    ISSN: 1531-5851
    Keywords: Primary 30D15 ; 42C15 ; Secondary 30D10 ; 42C30 ; Paley-Wiener space ; entire functions of exponential type ; exponential frames ; discrete norms ; sampling theorem
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    Notes: Abstract It is well known that for certain sequences {tn}n∈ℤ the usual Lp norm ∥·∥p in the Paley-Wiener space PW τ p is equivalent to the discrete norm ‖f‖p,{tn}:=(∑ n=−∞ ∞ |f(tn)|p)1/p for 1 ≤ p = 〈 ∞ and ‖f‖∞,{tn}:=sup n∈ℤ|f(tn| for p=∞). We estimate ∥f∥p from above by C∥f∥p, n and give an explicit value for C depending only on p, τ, and characteristic parameters of the sequence {tn}n∈ℤ. This includes an explicit lower frame bound in a famous theorem of Duffin and Schaeffer.
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    The journal of Fourier analysis and applications 5 (1999), S. 203-284 
    ISSN: 1531-5851
    Keywords: Primary 31C45 ; 42C99 ; Fractal differential equations ; analysis on fractals ; Sierpinski gasket ; eigenfunctions of the Laplacian ; wave propagation on fractals
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    Notes: Abstract Let Δ denote the symmetric Laplacian on the Sierpinski gasket SG defined by Kigami [11] as a renormalized limit of graph Laplacians on the sequence of pregaskets Gm whose limit is SG. We study the analogs of some of the classical partial differential equations with Δ playing the role of the usual Laplacian. For harmonic functions, biharmonic functions, and Dirichlet eigenfunctions of Δ, we give efficient algorithms to compute the solutions exactly, we display the results of implementing these algorithms, and we prove various properties of the solutions that are suggested by the data. Completing the work of Fukushima and Shima [8] who computed the Dirichlet eigenvalues and their multiplicities, we show how to construct a basis (but not orthonormal) for the eigenspaces, so that we have the analog of Fourier sine series on the unit interval. We also show that certain eigenfunctions have the property that they are a nonzero constant along certain lines contained in SG. For the analogs of the heat and wave equation, we give algorithms for approximating the solution, and display the results of implementing these algorithms. We give strong evidence that the analog of finite propagation for the wave equation does not hold because of inconsistent scaling behavior in space and time.
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    The journal of Fourier analysis and applications 5 (1999), S. 363-372 
    ISSN: 1531-5851
    Keywords: Primary 43A80 ; Secondary 44A12 ; spherical means ; Heisenberg group ; twisted spherical means ; Laguerre functions ; hypergeometric functions
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    Notes: Abstract We prove that the boundary of a bounded domain is a set of injectivity for the twisted spherical means on ℂ n for a certain class of functions on ℂ n . As a consequence we obtain results about injectivity of the spherical mean operator in the Heisenberg group and the complex Radon transform.
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    The journal of Fourier analysis and applications 5 (1999), S. 465-494 
    ISSN: 1531-5851
    Keywords: Fractional ARIMA ; midpoint displacement technique ; fractional Gaussian noise ; fractional derivative ; generalized functions ; self-similarity ; Primary 60G18 ; secondary 41A58 ; 60F15.
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    Notes: Abstract We provide an almost sure convergent expansion of fractional Brownian motion in wavelets which decorrelates the high frequencies. Our approach generalizes Lévy's midpoint displacement technique which is used to generate Brownian motion. The low-frequency terms in the expansion involve an independent fractional Brownian motion evaluated at discrete times or, alternatively, partial sums of a stationary fractional ARIMA time series. The wavelets fill in the gaps and provide the necessary high frequency corrections. We also obtain a way of constructing an arbitrary number of non-Gaussian continuous time processes whose second order properties are the same as those of fractional Brownian motion.
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    Bulletin of mathematical biology 29 (1967), S. 233-243 
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    Notes: Abstract A neuron is assumed to receive synaptic input of both excitatory and inhibitory natures from a large number of neighboring neurons; it is also assumed that a large number of such impulses are required to raise the neuron’s transmembrane potential to its threshold potential, at which it “fires” or “spikes”. The model is similar to one of Gerstein and Mandelbrot, except that in the absence of input an exponential decay of potential toward a resting level is introduced. Computational methods of determining the spike timeinterval distribution are discussed, along with the inverse problem of estimating the parameters of the system from observed spike time-interval data.
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    Bulletin of mathematical biology 29 (1967), S. 311-318 
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    Notes: Abstract Moens-Korteweg relations are developed for the velocity of wave propagation through an orthotropic elastic tube based on the three dimensional equations of elasticity. Numerical examples are presented for the femoral artery of a dog and several other orthotropic materials. These results are compared with those obtained from the equations of motion for an orthotropic elastic medium.
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    Bulletin of mathematical biology 29 (1967), S. 335-341 
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    Notes: Abstract Up to the present time, the following property of the product component in the reversible one substrate-one intermediate-one product enzymic mechanism has been taken only as anassumption, viz., during the course of the reaction, the time-rate of change of product concentration is never negative and the product concentration never exceeds its equilibrium value. Applying the methods of the geometric theory of ordinary differential equations it is shown that this result follows as a direct deduction from the differential equations governing the mechanism together with the initial conditions. Further, the nature of the equilibrium point as a stable node is established.
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    Bulletin of mathematical biology 29 (1967), S. 319-333 
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    Notes: Abstract An integro-differential equation treatment of multi-compartment systems is developed which permits formal analysis of the incomplete data which is available from partly accessible, partly injectable systems. New transport functions are defined which can be obtained directly from the experimental data. These functions serve to characterize the communication and topology between different accessible compartments and also the reentrant contributions from inaccessible sites. The method gives solutions consistent with those of the differential equation approach when the system is uniformly contiguous and accessible, more complete solutions than those of the integral equation approach when all measured compartments are injectable, and in addition provides complete or partial solutions for certain otherwise analytically intractable systems. Detailed numerical illustrations of the method are given.
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    Bulletin of mathematical biology 29 (1967), S. 405-405 
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    Bulletin of mathematical biology 29 (1967), S. 395-401 
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    Notes: Abstract In continuation of previous work (Rashevsky,Some Medical Aspects of Mathematical Biology, Springfield, Ill.: Charles C. Thomas, 1964, Chap. 23 and Appendix 14), the study of the effects of the physical parameters of the cells of endocrine glands on the onset of sustained periodical oscillations in the interaction between the anterior pituitary and the thyroid hormones is generalized to include the possible effect of the intercellular fluid and of the degree of vascularization. Some conclusions of the previous study remain valid although some modifications must be made. A decreased relative volume of the intercellular fluid and an increased vascularization favor the conditions for sustained oscillations. The permeability of the cells and the permeability of the capillaries appear explicitly in the expressions which show the conditions for sustained periodicities.
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    Bulletin of mathematical biology 29 (1967), S. 437-449 
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    Notes: Abstract A general model of a large 2m-ploid breeding population, withr loci ands h alleles at the h th locus is considered. It is assumed that the population is bisexual, non-overlapping and breeds by random mating. The genotypic structure of the population is presented as a bilinear form in the gametic output vectors where the genotype distribution is in the matrix form. Using the concept of the segregation distribution, the genotype proportions in the (n+1)st generation are given. An equilibrium condition for random chromosome segregation is obtained in terms of gene frequencies.
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    Bulletin of mathematical biology 29 (1967), S. 541-548 
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    Notes: Abstract The rigidity of the skull and the inertial characteristics and incompressibility of its contents cause the elastic cerebral arteries and veins to act over brief periods of time like rigid tubes of relatively small diameter. Poiseuille's law is applicable to their behavior. The use of this law, in combination with the fact that, during brief intervals, the total volume of the cerebral arteries and veins remains constant, permits derivation of a mathematical expression for the average arterial flow in terms of an average arterial radius. The differentiated equation has five positive roots which represent maxima and minima of the average flow in terms of the average arterial radius. The theoretical results have physiological implications and potential clinical usefulness, which are discussed.
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    Bulletin of mathematical biology 29 (1967), S. 549-563 
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    Notes: Abstract Equations are derived for the flow of an anisotropic fluid in a tube. It is argued that these provide a model for arterial blood flow. Particular attention is paid to the effect of radial differences in hematocrit. Sequels to this paper (Bull. Math. Biophysics,29, 565–574; forthcoming, 1967) will respectively demonstrate possible wall-directed forces on the erythrocyte and enlarge on the physiological consequence of hematocrit variations. The present article develops the basic equations and explores the possible role of anisotropic effects in blood flow.
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    Bulletin of mathematical biology 29 (1967), S. 575-581 
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    Notes: Abstract Concentric circular lines are present on X-ray diffraction patterns of DNA. They cannot be accounted for by the double helix model. It is suggested that they may indicate the presence of double helical side chains.
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    Bulletin of mathematical biology 29 (1967), S. 781-791 
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    Notes: Abstract An extension of an earlier model simulating the effects of light on the drosophila eclosion rhythm is presented. The effects of variable light intensity are described. This allows not only the simulation of certain experiments not covered by the earlier model, but also it permits an extension of the model to other organisms. By changing only its sensitivity to light the model simulates the phase response curves of certain mammals as well as Aschoff’srule.
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    Bulletin of mathematical biology 29 (1967), S. 827-829 
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    Notes: Abstract Previous derivations of the Stevens Power Law relating loudness to intensity assume, in addition to level invariance, that the relation must be analytic or at least differentiable. This last condition is replaced here by the weaker one of requiring only continuity.
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    Bulletin of mathematical biology 61 (1999), S. 207-208 
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    Bulletin of mathematical biology 61 (1999), S. 601-623 
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    Notes: Abstract In this paper a mathematical model is developed to describe the migration of labelled particles within a multicell spheroid. In the model, spatial variations in cell proliferation and death create an internal velocity field which leads to redistribution of the labelled and unlabelled cells. By applying a range of numerical and analytical techniques to the model equations, it is possible to show that, whilst the speed with which the labelled cells migrate through the tumour is independent of the type of cells that are labelled, their limiting distribution depends crucially on whether inert polystyrene microspheres or live tumour cells are labelled. These predictions are shown to be in good qualitative agreement with independent experimental results.
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    Bulletin of mathematical biology 61 (1999), S. 1009-1013 
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    Bulletin of mathematical biology 61 (1999), S. 935-947 
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    Notes: Abstract Human T-cell lymphotropic virus type I (HTLV-I) infection in humans causes a chronic infection of CD4+ T cells, and is associated with various disease outcomes, among them with the development of adult T-cell leukemia (ATL). The T-cell dynamics after HTLV-I infection can be described in a mathematical model with coupled differential equations. The infection process is modeled assuming cell-to-cell infection of CD4+ T cells. The model allows for CD4+ T cell subsets of susceptible, latently infected and actively infected cells as well as for leukemia cells. Latently infected T cells may harbor the virus for several years until they become activated and able to infect susceptible T cells. Uncontrolled proliferation of CD4+ T cells with monoclonal DNA-integration of HTLV-I results in the development of ATL. The model describes basic features that characterize HTLV-I infection; the chronic infection of CD4+ T cells, the increasing number of abnormal cells and the possible progression to ATL.
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    Bulletin of mathematical biology 61 (1999), S. 949-961 
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    Notes: Abstract A neighbourhood-based competition model for plant individuals is studied to evaluate how a hierarchical structure related to size may emerge in plant communities. It is shown by numerical simulations and linear stability analysis that many stable states exist in the hierarchical structure when both the total number of individuals and the degree of asymmetry of competition are high. When the hierarchical structures are self-organized by the dynamic instability of the homogeneous state due to non-linearity of competition, it is proved that these states are always locally stable. The relevance of the results to size structures in real plant communities (boreal forests vs tropical and temperate forests) is discussed. This is suggested to be the mechanism responsible for the coexistence of species in plant communities.
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    Bulletin of mathematical biology 61 (1999), S. 141-155 
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    Notes: Abstract Phenomenological models represent a simplified approach to the study of complex systems such as host-parasitoid interactions. In this paper we compare the dynamics of three phenomenological models for host-parasitoid interactions developed by May (1978), May and Hassell (1981) and May et al. (1981). The essence of the paper by May and Hassell (1981) was to define a minimum number of parameters that would describe the interactions, avoiding the technical difficulties encountered when using models that involve many parameters, yet yielding a system of equations that could capture the essence of real world interactions in patchy environments. Those studies dealt primarily with equilibrium and coexistence phenomena. Here we study the dynamics through bifurcation analysis and phase portraits in a much wider range of parameter values, carrying the models beyond equilibrium states. We show that the dynamics can be either stable or chaotic depending on the location of a damping term in the equations. In the case of the stable system, when host density dependence acts first, a stable point is reached, followed by a closed invariant curve in phase space that first increases then decreases, finally returning to an asymptotically stable point. Chaos is not seen. On the other hand, when parasitoid attack occurs before host density dependence, chaos is inevitably apparent. We show, as did May et al. (1981) and stated earlier byWang and Gutierrez (1980), that the sequence of events in host-parasitoid interactions is crucial in determining their stability. In a chaotic state the size of the host (e.g., insect pests) population becomes unpredictable, frequently becoming quite large, a biologically undesirable outcome. From a mathematical point of view the system is of interest because it reveals how a strategically placed damping term can dramatically alter the outcome. Our study, reaching beyond equilibrium states, suggests a strategy for biological control different from that of May et al. (1981).
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    Bulletin of mathematical biology 61 (1999), S. 179-205 
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    Notes: Abstract In this paper we study the uniform persistence (UP) of an association of two competing host species sharing a directly transmitted macroparasite. Like predators, parasites can regulate UP while the hosts are either coexisting or in a dominance relationship without any infections, but cannot regulate UP in case the hosts are in bistability. The regulatory mechanism depends on the relationships between the parameters, such as host intrinsic growth rate, host carrying capacity, susceptibility, parasite pathogenicity and the magnitude of parasite aggregation. In the case of coexistence the parametric space for UP is more than that for global stability of the host-parasite equilibrium, but is less than that for UP in the case of dominance. In the case of dominance, the parasites can alter the competitive outcome locally or can enhance the local exclusion of the inferior competitor and thus, unlike the predation, parasitism has an beneficial effect over competition. We derive explicitly the range of the values of ratios of the rates of reproduction and survivorship of the hosts, and also of the values of the degree of aggregations, with which macroparasites are not effective in maintaining its beneficial effect over competition. Finally our results support the body-size hypothesis of Price et al. (1988), with possible explanations of certain exceptional examples of the hypothesis.
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    Bulletin of mathematical biology 61 (1999), S. 209-220 
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    Notes: Abstract The representation of the shape of a biconcave erythrocyte by a set of three parametric equations was achieved by using the expressions that transform the curvilinear coordinates from the disc-cyclide coordinate system [denoted J2R; Moon and Spencer (1988), Field Theory Handbook, Springer-Verlag, Berlin] to Cartesian coordinates. The equations are products of elliptic functions, so the challenge was to relate the three major ’shape-defining’ measurements of the human erythrocyte in Cartesian coordinates to three parameters in the new curvilinear coordinates, to give a realistic representation of the shape of the membrane-surface. The relationships between the coefficients of the Cartesian degree-4 surface that describes the discocyte and the coordinate transformation equations were derived with the aid of Mathematica; and the membrane-surface of the cell was drawn using the ParametricPlot3D function in this ‘package’. By having the erythrocyte shape expressed in its new form it is readily amenable to further transformations that might be used to model those changes in shape that are seen when the cells are immersed in media of various osmolalities, or when they change metabolic ’states’. On the other hand, the relationship between the coefficients of the Cartesian expression for the disc-cyclide surface is relevant to image analysis of erythrocytes, as determined by physical methods that rely on Cartesian imaging ’slices’. These methods include confocal microscopy and various nuclear magnetic resonance microimaging procedures.
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    Bulletin of mathematical biology 61 (1999), S. 239-272 
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    Notes: Abstract A coupled model is presented for simulating physical and biological dynamics in fresh water lakes. The physical model rests upon the assumption that the turbulent kinetic energy in a water column of the lake is fully contained in a mixed layer of variable depth. Below this layer the mechanical energy content is assumed to vanish. Additionally, the horizontal currents are ignored. This one-dimensional two-layered model describes the internal conversion of the mechanical and thermal energy input from the atmosphere into an evolution of the mixed layer depth by entrainment and detrainment mechanisms. It is supposed to form the physical domain in which the simulation of the biological processes takes place. The biological model describes mathematically the typical properties of phyto-and zooplankton, their interactions and their response to the physical environment. This description then allows the study of the behaviour of Lagrangian clusters of virtual plankton that are subjected to such environments. The essence of the model is the dynamical simulation of an arbitrary number of nutrient limited phytoplankton species and one species of zooplankton. The members of the food web above and below affect the model only statically. The model is able to reproduce the typical progression of a predator-prey interaction between phyto-and zooplankton as well as the exploitative competition for nutrients between two phytoplankton species under grazing pressure of Daphnia. It suggests that the influence of the biological system on the physical system results in a weak increase of the surface temperature for coupled simulations, but a considerably higher seasonal thermocline in spring and a lower one in autumn.
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    Bulletin of mathematical biology 61 (1999), S. 303-339 
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    Notes: Abstract We investigate the dynamical behaviour of a simple plankton population model, which explicitly simulates the concentrations of nutrient, phytoplankton and zooplankton in the oceanic mixed layer. The model consists of three coupled ordinary differential equations. We use analytical and numerical techniques, focusing on the existence and nature of steady states and unforced oscillations (limit cycles) of the system. The oscillations arise from Hopf bifurcations, which are traced as each parameter in the model is varied across a realistic range. The resulting bifurcation diagrams are compared with those from our previouswork, where zooplankton mortality was simulated by a quadratic function—here we use a linear function, to represent alternative ecological assumptions. Oscillations occur across broader ranges of parameters for the linear mortality function than for the quadratic one, although the two sets of bifurcation diagrams show similar qualitative characteristics. The choice of zooplankton mortality function, or closure term, is an area of current interest in the modelling community, and we relate our results to simulations of other models.
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    Bulletin of mathematical biology 61 (1999), S. 355-363 
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    Notes: Abstract The bayesian decomposition of posterior distribution was used to develop a likelihood function to correct bias in the estimates of population parameters from data collected randomly with size-specific selectivity. Positive distributions with time as a parameter were used for parametrization of growth data. Numerical illustrations are provided. The alternative applications of the likelihood to estimate selectivity parameters are discussed.
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    Bulletin of mathematical biology 61 (1999), S. 1015-1016 
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    Notes: Abstract We present a model for the formation of parallel rows of scale cells in the developing adult wing of moths and butterflies. Precursors of scale cells differentiate throughout each epithelial monolayer and migrate into rows that are roughly parallel to the body axis. Grafting experiments have revealed what appears to be a gradient of adhesivity along the wing. What is more, cell adhesivity character is maintained after grafting. Thus we suggest that it is a cell’s location prior to migration that determines its interactions during migration. We use nonlinear bifurcation analysis to show that differential origin-dependent cell adhesion can result in the stabilization of rows over spots.
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    Bulletin of mathematical biology 61 (1999), S. 1065-1091 
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    Notes: Abstract Critical to epithelial cell viability is the homeostasis of cell volume and composition during changes in transcellular transport. In this study, two previously developed mathematical models (principal cell of the collecting duct and proximal tubule cell) are approximated by their linearizations about a reference condition. This yields matrices which estimate cell volume, cell composition, and transcellular fluxes in response to perturbations of bath conditions and membrane transporter activity. These approximations are themselves extended with the inclusion of linear dependence of membrane transport coefficients on cell variables (e.g., volume, solute concentrations, or electrical potential). This provides cell models with variable permeabilities, which may be homeostatic, and which can be examined systematically: sequentially testing each membrane permeability and its controlling cell variable. In the proximal tubule approximation, volume-mediated increases in peritubular K—Cl or Na—3HCO3 cotransport, and volume-mediated decreases in Na,K-ATPase activity are homeostatic; modulation of peritubular K permeability has little impact. In the principal cell model, volume homeostasis is afforded by volume-sensitive peritubular Na/H exchange or Cl− conductance. Predictions from the linear analysis are confirmed in the full models. This approach yields a systematic examination of homeostasis in an epithelial model, and identifies candidate control parameters.
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    The journal of Fourier analysis and applications 5 (1999), S. 159-184 
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    Keywords: Primary 65T20 ; secondary 42C10 ; 33C55 ; spherical harmonics ; fast transforms ; associated Legendre functions
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    Notes: Abstract Spherical harmonics arise on the sphere S2 in the same way that the (Fourier) exponential functions {eikθ}k∈ℤ arise on the circle. Spherical harmonic series have many of the same wonderful properties as Fourier series, but have lacked one important thing: a numerically stable fast transform analogous to the Fast Fourier Transform (FFT). Without a fast transform, evaluating (or expanding in) spherical harmonic series on the computer is slow—for large computations probibitively slow. This paper provides a fast transform. For a grid ofO(N2) points on the sphere, a direct calculation has computational complexityO(N4), but a simple separation of variables and FFT reduce it toO(N3) time. Here we present algorithms with timesO(N5/2 log N) andO(N2(log N)2). The problem quickly reduces to the fast application of matrices of associated Legendre functions of certain orders. The essential insight is that although these matrices are dense and oscillatory, locally they can be represented efficiently in trigonometric series.
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    The journal of Fourier analysis and applications 5 (1999), S. v 
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    Transformation groups 4 (1999), S. i 
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    The journal of Fourier analysis and applications 5 (1999), S. v 
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    Transformation groups 4 (1999), S. 3-24 
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    Notes: Abstract Weakly symmetric homogeneous spaces were introduced by A. Selberg in 1956. We prove that, for a real reductive algebraic group, they can be characterized as the spaces of real points of affine spherical homogeneous varieties of the complexified group. As an application, under the same assumption on the transitive group, we show that weakly symmetric spaces are precisely the homogeneous Riemannian manifolds with commutative algebra of invariant differential operators.
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    Transformation groups 4 (1999), S. 53-95 
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    Notes: Abstract We study the modificationA→A′ of an affine domainA which produces another affine domainA′=A[I/f] whereI is a nontrivial ideal ofA andf is a nonzero element ofI. First appeared in passing in the basic paper of O. Zariski [Zar], it was further considered by E. D. Davis [Da]. In [Ka1] its geometric counterpart was applied to construct contractible smooth affine varieties non-isomorphic to Euclidean spaces. Here we provide certain conditions (more general than those in [Ka1]) which guarantee preservation of the topology under a modification. As an application, we show that the group of biregular automorphisms of the affine hypersurfaceX⊂C k+2, given by the equationuv=(p(x 1,...,xk) wherep∈C[x 1,...,x k ],k≥2, actsm-transitively on the smooth part regX ofX for anym∈N. We present examples of such hypersurfaces diffeomorphic to Euclidean spaces.
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    Transformation groups 4 (1999), S. 273-300 
    ISSN: 1531-586X
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mathematics
    Notes: Abstract The symmetric varieties considered in this paper are the quotientsG/H, whereG is an adjoint semi-simple group over a fieldk of characteristic ≠ 2, andH is the fixed point group of an involutorial automorphism ofG which is defined overk. In the casek=C, De Concini and Procesi (1983) constructed a “wonderful” compactification ofG/H. We prove the existence of such a compactification for arbitraryk. We also prove cohomology vanishing results for line bundles on the compactification.
    Type of Medium: Electronic Resource
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  • 99
    Electronic Resource
    Electronic Resource
    Springer
    Transformation groups 4 (1999), S. 303-327 
    ISSN: 1531-586X
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mathematics
    Notes: Abstract The Yang-Baxter equation admits two classes of elliptic solutions, the vertex type and the face type. On the basis of these solutions, two types of elliptic quantum groups have been introduced (Foda et al. [FIJKMY1], Felder [Fe]). Frønsdal [Fr1, Fr2] made a penetrating observation that both of them are quasi-Hopf algebras, obtained by twisting the standard quantum affine algebraU q(g). In this paper we present an explicit formula for the twistors in the form of an infinite product of the universalR matrix ofU q(g). We also prove the shifted cocycle condition for the twistors, thereby completing Frønsdal's findings. This construction entails that, for generic values of the deformation parameters, the representation theory forU q(g) carries over to the elliptic algebras, including such objects as evaluation modules, highest weight modules and vertex operators. In particular, we confirm the conjectures of Foda et al. concerning the elliptic algebraA q,p ( $$\widehat{\mathfrak{s}\mathfrak{l}}_2 $$ ).
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  • 100
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    Electronic Resource
    Springer
    Transformation groups 4 (1999), S. 375-404 
    ISSN: 1531-586X
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mathematics
    Notes: Abstract In this survey we shall prove a convexity theorem for gradient actions of reductive Lie groups on Riemannian symmetric spaces. After studying general properties of gradient maps, this proof is established by (1) an explicit calculation on the hyperbolic plane followed by a transfer of the results to general reductive Lie groups, (2) a reduction to a problem on abelian spaces using Kostant's Convexity Theorem, (3) an application of Fenchel's Convexity Theorem. In the final section the theorem is applied to gradient actions on other homogeneous spaces and we show, that Hilgert's Convexity Theorem for moment maps can be derived from the results.
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