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  • Elsevier  (4,986)
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  • American Institute of Physics
  • American Meteorological Society
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  • 1
    Publication Date: 2023-06-21
    Description: The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic spe-cies with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to cope with long periods of limited food sup-ply, while growth and reproduction are timed to take advantage of seasonal peaks in primary production. However, anthropogenic warming is inducing changes in the expected timing of phytoplankton blooms, suggesting phenological mismatches with negative consequences for the N. Atlantic ecosystem. While diapause mechanisms are mainly studied in terrestrial arthropods, specifically on laboratory model species, such as the fruit fly Drosophila, the molecular investigations of annual rhythms in wild marine species remain fragmentary. Here we performed a rigorous year-l ong monthly sampling campaign of C. finmarchicus in a Scottish Loch (UK; 56.45°N, 5.18°W) to generate an annual transcriptome. The mRNA of 36 samples (monthly triplicate of 25 individuals) have been deeply sequenced with an average depth of 137 ± 4 million reads (mean ± SE) per sample, aligned to the reference transcriptome, and filtered. We detail the quality assessment of the datasets and provide a high- quality resource for the investigation of wild annual transcriptomic rhythms (35,357 components) in a key diapausing zooplanktonic species.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 2
    Publication Date: 2023-06-21
    Description: Dissolved organic matter (DOM) is the largest organic carbon reservoir in the ocean and an integral component of biogeochemical cycles. The role of free-living microbes in DOM transformation has been studied thoroughly, whereas little attention has been directed towards the influence of benthic organisms. Sponges are efficient filter feeders and common inhabitants of many benthic communities circumglobally. Here, we investigated how two tropical coral reef sponges shape marine DOM. We compared bacterial abundance, inorganic and organic nutrients in off reef, sponge inhalant, and sponge exhalant water of Melophlus sarasinorum and Rhabdastrella globostellata. DOM and bacterial cells were taken up, and dissolved inorganic nitrogen was released by the two Indo-Pacific sponges. Both sponge species utilized a common set of 142 of a total of 3040 compounds detected in DOM on a molecular formula level via ultrahigh-resolution mass spectrometry. In addition, species-specific uptake was observed, likely due to differences in their associated microbial communities. Overall, the sponges removed presumably semi-labile and semi-refractory compounds from the water column, thereby competing with pelagic bacteria. Within minutes, sponge holobionts altered the molecular composition of surface water DOM (inhalant) into a composition similar to deep-sea DOM (exhalent). The apparent radiocarbon age of DOM increased consistently from off reef and inhalant to exhalant by about 900 14C years for M. sarasinorum. In the pelagic, similar transformations require decades to centuries. Our results stress the dependence of DOM lability definition on the respective environment and illustrate that sponges are hotspots of DOM transformation in the ocean.
    Repository Name: EPIC Alfred Wegener Institut
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  • 3
    Publication Date: 2023-06-21
    Description: In light of ongoing climate change, it is increasingly important to know how nutritional requirements of ectotherms are affected by changing temperatures. Here, we analyse the wide thermal response of phosphorus (P) requirements via elemental gross growth efficiencies of Carbon (C) and P, and the Threshold Elemental Ratios in different aquatic invertebrate ectotherms: the freshwater model species Daphnia magna, the marine copepod Acartia tonsa, the marine heterotrophic dinoflagellate Oxyrrhis marina, and larvae of two populations of the marine crab Carcinus maenas. We show that they all share a non-linear cubic thermal response of nutrient requirements. Phosphorus requirements decrease from low to intermediate temperatures, increase at higher temperatures and decrease again when temperature is excessive. This common thermal response of nutrient requirements is of great importance if we aim to understand or even predict how ectotherm communities will react to global warming and nutrient-driven eutrophication.
    Repository Name: EPIC Alfred Wegener Institut
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  • 4
    Publication Date: 2023-10-04
    Description: The current policy and goals aimed to conserve biodiversity and manage biodiversity change are often formulated at the global scale. At smaller scales however, biodiversity change is more nuanced leading to a plethora of trends in different metrics of alpha diversity and temporal turnover. Therefore, large-scale policy targets do not translate easily into local to regional management decisions for biodiversity. Using long-term monitoring data from the Wadden Sea (Southern North Sea), joining structural equation models and general dissimilarity models enabled a better overview of the drivers of biodiversity change. Few commonalities emerged as birds, fish, macroinvertebrates, and phytoplankton differed in their response to certain drivers of change. These differences were additionally dependent upon the biodiversity aspect in question and which environmental data were recorded in each monitoring program. No single biodiversity metric or model sufficed to capture all ongoing change, which requires an explicitly multivariate approaches to biodiversity assessment in local ecosystem management.
    Repository Name: EPIC Alfred Wegener Institut
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  • 5
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    American Meteorological Society
    In:  EPIC3Journal of Climate, American Meteorological Society, 35(23), pp. 7811-7831, ISSN: 0894-8755
    Publication Date: 2023-06-23
    Description: Numerical simulations allow us to gain a comprehensive understanding of the underlying mechanisms of past, present, and future climate changes. The mid-Holocene (MH) and the last interglacial (LIG) were the two most recent warm episodes of Earth’s climate history and are the focus of paleoclimate research. Here, we present results of MH and LIG simulations with two versions of the state-of-the-art Earth system model AWI-ESM. Most of the climate changes in MH and LIG compared to the preindustrial era are agreed upon by the two model versions, including 1) enhanced seasonality in surface temperature that is driven by the redistribution of seasonal insolation; 2) a northward shift of the intertropical convergence zone (ITCZ) and tropical rain belt; 3) a reduction in annual mean Arctic sea ice concentration; 4) weakening and northward displacement of the Northern Hemisphere Hadley circulation, which is related to the decrease and poleward shift of the temperature gradient from the subtropical to the equator in the Northern Hemisphere; 5) a westward shift of the Indo-Pacific Walker circulation due to anomalous warming over the Eurasia and North Africa during boreal summer; and 6) an expansion and intensification of Northern Hemisphere summer monsoon rainfall, with the latter being dominated by the dynamic component of moisture budget (i.e., the strengthening of wind circulation). However, the simulated responses of the Atlantic meridional overturning circulation (AMOC) in the two models yield different results for both the LIG and the MH. AMOC anomalies between the warm interglacial and preindustrial periods are associated with changes in North Atlantic westerly winds and stratification of the water column at the North Atlantic due to changes in ocean temperature, salinity, and density.
    Repository Name: EPIC Alfred Wegener Institut
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  • 6
    Publication Date: 2023-10-18
    Description: We propose a procedure based on remote sensing Sentinel-1 InSAR data aiming at evaluating the variability of the moment tensor solutions provided by different agencies in case of light-to-moderate earthquake. We model the expected coseismic ground deformations from the available moment tensor solutions and compare them with the real ones retrieved with the InSAR data. Any differences between location and intensity of simulated and estimated seismic-induced deformation fields allow indirectly evaluating the variability of the solutions in terms of epicenter locations and kinematics of the causative faults. We applied this investigation method to several light (4〈Mw 〈 4.9) to moderate (5〈Mw 〈 5.9) earthquakes occurred along the Mediterranean area since the launch of the Sentinel-1A mission in 2014. The selected seismic events cover all the faulting mechanisms and are characterized by different estimated magnitudes and depths thus offering a synoptic view of the performance of the procedure in several cases. Thanks to the global coverage and the unprecedented revisit time of Sentinel-1 acquisitions, the proposed procedure can be easily extended to any seismic event occurred inland worldwide.
    Description: Published
    Description: 100057
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 7
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    Elsevier
    In:  EPIC3Political Geography, Elsevier, 92, pp. 102581-102581, ISSN: 0962-6298
    Publication Date: 2023-10-30
    Repository Name: EPIC Alfred Wegener Institut
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  • 8
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    Elsevier
    In:  EPIC3Chemical Geology, Elsevier, 597, pp. 120795-120795, ISSN: 0167-6695
    Publication Date: 2023-10-30
    Description: Ocean environmental conditions can be inferred from the chemical composition of bamboo coral skeletons. The high magnesium calcite internodes of these long-living octocorals may therefore represent a potential archive for seawater properties such as salinity or temperature where instrumental time series are absent. To extend these time series into the past using a natural archive the principles of temperature and salinity signal incorporation into cold-water coral skeletal material need to be investigated. Since skeletal Na and S concentrations have been proposed as environmental proxies, we mapped the spatial distribution and concentration of these elements in two Atlantic specimens of Keratoisis grayi (family Isididae). These measurements were conducted with an electron microprobe applying a spatial resolution of 4 μm. The mean apparent distribution coefficient of Na/Ca for the two samples was within 2.5 and 2.8*10−4, while that of S shows a similar depletion relative to seawater with 3.8 and 3.6*10−3. The two elements show an inverse correlation in bamboo coral skeletons. The mean apparent distribution coefficient of Na is similar to that of abiotic calcites. This similarity can be interpreted as the absence of significant vital effects for skeletal Na/Ca. Hence it corroborates the idea that the average skeletal composition of bamboo corals holds the potential to record past seawater conditions. In contrast, it appears unlikely that the spatial variations of the element distribution of seemingly simultaneously precipitated material along growth rings are exclusively controlled by environmental factors. We further exclude Rayleigh fractionation, ion-specific pumping, and Ca/proton exchange as the driver of Na and S distribution in bamboo corals. Instead, we adapt a calcification model originally proposed for scleractinians to bamboo corals. This model can explain the observed distribution of Na and S in the skeleton by a combination of Ca/proton pumping, bicarbonate active transport, and the formation of an organic skeletal matrix. The adapted model can further be used to predict the theoretical behaviour of other elements and disentangle vital effects from external factors influencing compositional features. It is therefore a useful tool for future studies on the potential of bamboo corals as environmental archives.
    Repository Name: EPIC Alfred Wegener Institut
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  • 9
    Publication Date: 2023-09-27
    Description: Cell size is a master trait in the functional ecology of phytoplankton correlating with numerous morphological, physiological, and life-cycle characteristics of species that constrain their nutrient use, growth, and edibility. In contrast to well-known spatial patterns in cell size at macroecological scales or temporal changes in experimental contexts, few data sets allow testing temporal changes in cell sizes within ecosystems. To analyze the temporal changes of intraspecific and community-wide cell size, we use the phytoplankton data derived from the Lower Saxony Wadden Sea monitoring program, which comprises sample- and species-specific measurements of cell volume from 1710 samples collected over 14 yr. We find significant reductions in both the cell volume of most species and the weighted mean cell size of communities. Mainly diatoms showed this decline, whereas the size of dinoflagellates seemed to be less responsive. The magnitude of the trend indicates that cell volumes are about 30% smaller now than a decade ago. This interannual trend is overlayed by seasonal cycles with smaller cells typically observed in summer. In the subset of samples including environmental conditions, small community cell size was strongly related to high temperatures and low total phosphorus concentration. We conclude that cell size captures ongoing changes in phytoplankton communities beyond the changes in species composition. In addition, based on the changes in species biovolumes revealed by our analysis, we warn that using standard cell size values in phytoplankton assessment will not only miss temporal changes in size, but also lead to systematic errors in biomass estimates over time.
    Repository Name: EPIC Alfred Wegener Institut
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  • 10
    Publication Date: 2023-09-27
    Description: 〈jats:p〉Anthropogenic climate change is altering global biogeographical patterns. However, it remains difficult to quantify how bioregions are changing because pre‐industrial records of species distributions are rare. Marine microfossils, such as planktonic foraminifera, are preserved in seafloor sediments and allow the quantification of bioregions in the past. Using a recently compiled data set of pre‐industrial species composition of planktonic foraminifera in 3802 worldwide seafloor sediments, we employed multivariate and statistical model‐based approaches to study spatial turnover in order to 1) quantify planktonic foraminifera bioregions and 2) understand the environmental drivers of species turnover. Four latitudinally banded bioregions emerge from the global assemblage data. The polar and temperate bioregions are bi‐hemispheric, supporting the idea that planktonic foraminifera species are not limited by dispersal. The equatorial bioregion shows complex longitudinal patterns and overlaps in sea surface temperature (SST) range with the tropical bioregion. Compositional‐turnover models (Bayesian bootstrap generalised dissimilarity models) identify SST as the strongest driver of species turnover. The turnover rate is constant across most of the SST gradient, showing no SST threshold values with rapid shifts in species composition, but decelerates above 25°C, suggesting SST is less predictive of species composition in warmer waters. Other environmental predictors affect species turnover non‐linearly, and their importance differs across regions. In the Pacific ocean, net primary productivity below 500 mgC m〈jats:sup〉−2〈/jats:sup〉 day〈jats:sup〉−1〈/jats:sup〉 drives fast compositional change. Water depth values below 3000 m (which affect calcareous microfossil preservation) increasingly drive changes in species composition among death assemblages in the Pacific and Indian oceans. Together, our results suggest that the dynamics of planktonic foraminifera bioregions are expected to be highly responsive to climate change; however, at lower latitudes, environmental drivers other than SST may affect these dynamics.〈/jats:p〉
    Repository Name: EPIC Alfred Wegener Institut
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  • 11
    Publication Date: 2023-09-27
    Description: While environmental science, and ecology in particular, is working to provide better understanding to base sustainable decisions on, the way scientific understanding is developed can at times be detrimental to this cause. Locked-in debates are often unnecessarily polarised and can compromise any common goals of the opposing camps. The present paper is inspired by a resolved debate from an unrelated field of psychology where Nobel laureate David Kahneman and Garry Klein turned what seemed to be a locked-in debate into a constructive process for their fields. The present paper is also motivated by previous discourses regarding the role of thresholds in natural systems for management and governance, but its scope of analysis targets the scientific process within complex social-ecological systems in general. We identified four features of environmental science that appear to predispose for locked-in debates: (1) The strongly context-dependent behaviour of ecological systems. (2) The dominant role of single hypothesis testing. (3) The high prominence given to theory demonstration compared investigation. (4) The effect of urgent demands to inform and steer policy. This fertile ground is further cultivated by human psychological aspects as well as the structure of funding and publication systems.
    Repository Name: EPIC Alfred Wegener Institut
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  • 12
    Publication Date: 2023-09-27
    Description: Field studies are essential to reliably quantify ecological responses to global change because they are exposed to realistic climate manipulations. Yet such studies are limited in replicates, resulting in less power and, therefore, potentially unreliable effect estimates. Furthermore, while manipulative field experiments are assumed to be more powerful than non-manipulative observations, it has rarely been scrutinized using extensive data. Here, using 3847 field experiments that were designed to estimate the effect of environmental stressors on ecosystems, we systematically quantified their statistical power and magnitude (Type M) and sign (Type S) errors. Our investigations focused upon the reliability of field experiments to assess the effect of stressors on both ecosystem's response magnitude and variability. When controlling for publication bias, single experiments were underpowered to detect response magnitude (median power: 18%–38% depending on effect sizes). Single experiments also had much lower power to detect response variability (6%–12% depending on effect sizes) than response magnitude. Such underpowered studies could exaggerate estimates of response magnitude by 2–3 times (Type M errors) and variability by 4–10 times. Type S errors were comparatively rare. These observations indicate that low power, coupled with publication bias, inflates the estimates of anthropogenic impacts. Importantly, we found that meta-analyses largely mitigated the issues of low power and exaggerated effect size estimates. Rather surprisingly, manipulative experiments and non-manipulative observations had very similar results in terms of their power, Type M and S errors. Therefore, the previous assumption about the superiority of manipulative experiments in terms of power is overstated. These results call for highly powered field studies to reliably inform theory building and policymaking, via more collaboration and team science, and large-scale ecosystem facilities. Future studies also require transparent reporting and open science practices to approach reproducible and reliable empirical work and evidence synthesis.
    Repository Name: EPIC Alfred Wegener Institut
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  • 13
    Publication Date: 2023-09-27
    Description: Body size is a decisive functional trait in many organisms, especially for phytoplankton, which span several orders of magnitude in cell volume. Therefore, the analysis of size as a functional trait driving species’ performance has received wide attention in aquatic ecology, amended in recent decades by studies documenting changes in phytoplankton size in response to abiotic or biotic factors in the environment. We performed a systematic literature review to provide an overarching, partially quantitative synthesis of cell size as a driver and sentinel of phytoplankton ecology. We found consistent and significant allometric relationships between cell sizes and the functional performance of phytoplankton species (cellular rates of carbon fixation, respiration and exudation as well as resource affinities, uptake and content). Size scaling became weaker, absent or even negative when addressing C- or volume-specific rates or growth. C-specific photosynthesis and population growth rate peaked at intermediate cell sizes around 100 µm3. Additionally, we found a rich literature on sizes changing in response to warming, nutrients and pollutants. Whereas small cells tended to dominate under oligotrophic and warm conditions, there are a few notable exceptions, which indicates that other environmental or biotic constraints alter this general trend. Grazing seems a likely explanation, which we reviewed to understand both how size affects edibility and how size structure changes in response to grazing. Cell size also predisposes the strength and outcome of competitive interactions between algal species. Finally, we address size in a community context, where size-abundance scaling describes community composition and thereby the biodiversity in phytoplankton assemblages. We conclude that (a) size is a highly predictive trait for phytoplankton metabolism at the cellular scale, with less strong and nonlinear implications for growth and specific metabolism and (b) size structure is a highly suitable sentinel of phytoplankton responses to changing environments. A free Plain Language Summary can be found within the Supporting Information of this article.
    Repository Name: EPIC Alfred Wegener Institut
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  • 14
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    Elsevier
    In:  EPIC3Automatica, Elsevier, 144, pp. 110487-110487, ISSN: 0005-1098
    Publication Date: 2023-10-23
    Description: The presence of tipping points in ecological systems implies abrupt changes in the dynamics of the ecosystem. In these piecewise-smooth dynamical systems sliding dynamics, i.e., dynamics on the switching boundary, have been reported for population models. However, the question whether or not, and if so under which conditions, sliding dynamics may occur in an optimally controlled system have not yet been studied. We explore this issue in a simple harvesting model with two regimes, and find that optimal sliding may occur if regular steady states do not exist. Hence, sliding dynamics may be part of an optimal policy.
    Repository Name: EPIC Alfred Wegener Institut
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  • 15
    Publication Date: 2023-08-01
    Description: Autonomous and cabled platforms are revolutionizing our understanding of ocean systems by providing 4D monitoring of the water column, thus going beyond the reach of ship-based surveys and increasing the depth of remotely sensed observations. However, very few commercially available sensors for such platforms are capable of monitoring large particulate matter (100–2000 μm) and plankton despite their important roles in the biological carbon pump and as trophic links from phytoplankton to fish. Here, we provide details of a new, commercially available scientific camera-based particle counter, specifically designed to be deployed on autonomous and cabled platforms: the Underwater Vision Profiler 6 (UVP6). Indeed, the UVP6 camera-and-lighting and processing system, while small in size and requiring low power, provides data of quality comparable to that of previous much larger UVPs deployed from ships. We detail the UVP6 camera settings, its performance when acquiring data on aquatic particles and plankton, their quality control, analysis of its recordings, and streaming from in situ acquisition to users. In addition, we explain how the UVP6 has already been integrated into platforms such as BGC-Argo floats, gliders and long-term mooring systems (autonomous platforms). Finally, we use results from actual deployments to illustrate how UVP6 data can contribute to addressing longstanding questions in marine science, and also suggest new avenues that can be explored using UVP6-equipped autonomous platforms.
    Repository Name: EPIC Alfred Wegener Institut
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  • 16
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    Elsevier
    In:  EPIC3Progress in Oceanography, Elsevier, 206, pp. 102851, ISSN: 00796611
    Publication Date: 2023-08-01
    Description: Harmful Algae Blooms pose an increasing threat to the public health and economic stability of Southern Chile, particularly to the aquaculture industries. This fieldwork performed during the PROFAN expedition from 12th to 22nd November 2019 extends the knowledge on the distribution of marine toxin-producing species in the difficult to access Última Esperanza Province in the Magallanes Region. Paralytic Shellfish Poisoning toxins with high relative abundances of saxitoxin and lipophilic toxins dominated by yessotoxins, pectenotoxins and domoic acid were detected at nearly each sampling station. The respective toxin-producing organisms are mainly from the genus Alexandrium and Dinophysis. Furthermore, the first detection of pinnatoxin-G (PnTx-G) in Chilean waters strongly indicates the presence of the dinoflagellate Vulcanodinium rugosum.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 17
    Publication Date: 2023-05-10
    Description: The Antarctic krill (Euphausia superba Dana) is a keystone species in the Southern Ocean that uses an arsenal of hydrolases for biomacromolecule decomposition to effectively digest its omnivorous diet. The present study builds on a hybrid-assembled transcriptome (13,671 ORFs) combined with comprehensive proteome profiling. The analysis of individual krill compartments allowed detection of significantly more different proteins compared to that of the entire animal (1464 vs. 294 proteins). The nearby krill sampling stations in the Bransfield Strait (Antarctic Peninsula) yielded rather uniform proteome datasets. Proteins related to energy production and lipid degradation were particularly abundant in the abdomen, agreeing with the high energy demand of muscle tissue. A total of 378 different biomacromolecule hydrolysing enzymes were detected, including 250 proteases, 99 CAZymes, 14 nucleases and 15 lipases. The large repertoire in proteases is in accord with the protein-rich diet affiliatedwith E. superba’s omnivorous lifestyle and complex biology. The richness in chitin-degrading enzymes allows not only digestion of zooplankton diet, but also the utilisation of the discharged exoskeleton after moulting.
    Repository Name: EPIC Alfred Wegener Institut
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  • 18
    Publication Date: 2023-01-27
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(8), (2022): 1705-1730, https://doi.org/10.1175/jpo-d-21-0243.1.
    Description: Formation and evolution of barrier layers (BLs) and associated temperature inversions (TIs) were investigated using a 1-yr time series of oceanic and air–sea surface observations from three moorings deployed in the eastern Pacific fresh pool. BL thickness and TI amplitude showed a seasonality with maxima in boreal summer and autumn when BLs were persistently present. Mixed layer salinity (MLS) and mixed layer temperature (MLT) budgets were constructed to investigate the formation mechanism of BLs and TIs. The MLS budget showed that BLs were initially formed in response to horizontal advection of freshwater in boreal summer and then primarily maintained by precipitation. The MLT budget revealed that penetration of shortwave radiation through the mixed layer base is the dominant contributor to TI formation through subsurface warming. Geostrophic advection is a secondary contributor to TI formation through surface cooling. When the BL exists, the cooling effect from entrainment and the warming effect from detrainment are both significantly reduced. In addition, when the BL is associated with the presence of a TI, entrainment works to warm the mixed layer. The presence of BLs makes the shallower mixed layer more sensitive to surface heat and freshwater fluxes, acting to enhance the formation of TIs that increase the subsurface warming via shortwave penetration.
    Description: SK is supported by JSPS Overseas Research Fellowships. JS and SK are supported by NASA Grant 80NSSC18K1500. JTF and the mooring deployment were funded by NASA Grants NNX15AG20G and 80NSSC18K1494. DZ is supported by NASA Grant 80NSSC18K1499. This publication is partially funded by the Cooperative Institute for Climate, Ocean, and Ecosystem Studies (CICOES) under NOAA Cooperative Agreement NA20OAR4320271, Contribution 2021-1152. This is PMEL Contribution 5268.
    Description: 2023-01-27
    Keywords: Ocean ; North Pacific Ocean ; Tropics ; Entrainment ; Oceanic mixed layer ; Salinity
    Repository Name: Woods Hole Open Access Server
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  • 19
    Publication Date: 2023-02-01
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(8), (2022): 1927-1943, https://doi.org/10.1175/jpo-d-21-0124.1.
    Description: The Galápagos Archipelago lies on the equator in the path of the eastward flowing Pacific Equatorial Undercurrent (EUC). When the EUC reaches the archipelago, it upwells and bifurcates into a north and south branch around the archipelago at a latitude determined by topography. Since the Coriolis parameter (f) equals zero at the equator, strong velocity gradients associated with the EUC can result in Ertel potential vorticity (Q) having sign opposite that of planetary vorticity near the equator. Observations collected by underwater gliders deployed just west of the Galápagos Archipelago during 2013–16 are used to estimate Q and to diagnose associated instabilities that may impact the Galápagos Cold Pool. Estimates of Q are qualitatively conserved along streamlines, consistent with the 2.5-layer, inertial model of the EUC by Pedlosky. The Q with sign opposite of f is advected south of the Galápagos Archipelago when the EUC core is located south of the bifurcation latitude. The horizontal gradient of Q suggests that the region between 2°S and 2°N above 100 m is barotropically unstable, while limited regions are baroclinically unstable. Conditions conducive to symmetric instability are observed between the EUC core and the equator and within the southern branch of the undercurrent. Using 2-month and 3-yr averages, e-folding time scales are 2–11 days, suggesting that symmetric instability can persist on those time scales.
    Description: This work was supported by the National Science Foundation (Grants OCE-1232971 and OCE-1233282), the NASA Earth and Space Science Fellowship Program (Grant 80NSSC17K0443), and the Global Ocean Monitoring and Observing Program of the National Oceanographic and Atmospheric Administration (NA13OAR4830216). Color maps are from Thyng et al. (2016).
    Description: 2023-02-01
    Keywords: Currents ; In situ oceanic observations ; Instability ; Mixing ; Ocean dynamics ; Pacific Ocean ; Potential vorticity ; Tropics
    Repository Name: Woods Hole Open Access Server
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  • 20
    Publication Date: 2023-02-01
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 39(8), (2022): 1183-1198, https://doi.org/10.1175/jtech-d-21-0068.1.
    Description: Horizontal kinematic properties, such as vorticity, divergence, and lateral strain rate, are estimated from drifter clusters using three approaches. At submesoscale horizontal length scales O(1–10)km, kinematic properties become as large as planetary vorticity f, but challenging to observe because they evolve on short time scales O(hourstodays). By simulating surface drifters in a model flow field, we quantify the sources of uncertainty in the kinematic property calculations due to the deformation of cluster shape. Uncertainties arise primarily due to (i) violation of the linear estimation methods and (ii) aliasing of unresolved scales. Systematic uncertainties (iii) due to GPS errors, are secondary but can become as large as (i) and (ii) when aspect ratios are small. Ideal cluster parameters (number of drifters, length scale, and aspect ratio) are determined and error functions estimated empirically and theoretically. The most robust method—a two-dimensional, linear least squares fit—is applied to the first few days of a drifter dataset from the Bay of Bengal. Application of the length scale and aspect-ratio criteria minimizes errors (i) and (ii), and reduces the total number of clusters and so computational cost. The drifter-estimated kinematic properties map out a cyclonic mesoscale eddy with a surface, submesoscale fronts at its perimeter. Our analyses suggest methodological guidance for computing the two-dimensional kinematic properties in submesoscale flows, given the recently increasing quantity and quality of drifter observations, while also highlighting challenges and limitations.
    Description: This research was supported by the Office of Naval Research (ONR) Departmental Research Initiative ASIRI under Grant N00014-13-1-0451 (SE and AM) and Grant N00014-13-1-0477 (VH and LC). The authors thank the captain and crew of the R/V Roger Revelle, and Andrew Lucas with the Multiscale Ocean Dynamics group at the Scripps Institution for Oceanography for providing the FastCTD data collected in 2015, which was supported by ONR Grant N00014-13-1-0489, as well as Eric D’Asaro for helpful discussions and Lance Braasch for assistance with the drifter dataset. AM and SE further thank NSF (Grant OCE-I434788) and ONR (Grant N00014-16-1-2470) for support. VH and LC were additionally supported by ONR Grants N00014-15-1-2286, N00014-14-1-0183, N00014-19-1-26-91 and NOAA Global Drifter Program (GDP) Grant NA15OAR4320071.
    Description: 2023-02-01
    Keywords: Indian Ocean ; Eddies ; Frontogenesis/frontolysis ; Fronts ; Lagrangian circulation/transport ; Ocean circulation ; Ocean dynamics
    Repository Name: Woods Hole Open Access Server
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  • 21
    Publication Date: 2023-02-01
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 35(17), (2022): 5465-5482, https://doi.org/10.1175/jcli-d-21-0671.1.
    Description: Understanding the contribution of ocean circulation to glacial–interglacial climate change is a major focus of paleoceanography. Specifically, many have tried to determine whether the volumes and depths of Antarctic- and North Atlantic–sourced waters in the deep ocean changed at the Last Glacial Maximum (LGM; ∼22–18 kyr BP) when atmospheric pCO2 concentrations were 100 ppm lower than the preindustrial. Measurements of sedimentary geochemical proxies are the primary way that these deep ocean structural changes have been reconstructed. However, the main proxies used to reconstruct LGM Atlantic water mass geometry provide conflicting results as to whether North Atlantic–sourced waters shoaled during the LGM. Despite this, a number of idealized modeling studies have been advanced to describe the physical processes resulting in shoaled North Atlantic waters. This paper aims to critically assess the approaches used to determine LGM Atlantic circulation geometry and lay out best practices for future work. We first compile existing proxy data and paleoclimate model output to deduce the processes responsible for setting the ocean distributions of geochemical proxies in the LGM Atlantic Ocean. We highlight how small-scale mixing processes in the ocean interior can decouple tracer distributions from the large-scale circulation, complicating the straightforward interpretation of geochemical tracers as proxies for water mass structure. Finally, we outline promising paths toward ascertaining the LGM circulation structure more clearly and deeply.
    Description: S.K.H. was supported by the Investment in Science Fund at WHOI and the John E. and Anne W. Sawyer Endowed Fund in Support of Scientific Staff. F.J.P. was supported by a Stanback Postdoctoral Fellowship at Caltech.
    Description: 2023-02-01
    Keywords: Diapycnal mixing ; Meridional overturning circulation ; Ocean circulation
    Repository Name: Woods Hole Open Access Server
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  • 22
    Publication Date: 2023-06-21
    Description: Phytoplanktonic organisms are particularly sensitive to environmental change, and, as they represent a direct link between abiotic and biotic compartments within the marine food web, changes in the functional structure of phytoplankton communities can result in profound impacts on ecosystem functioning. Using a trait-based approach, we examined changes in the functional structure of the southern North Sea phytoplankton over the past five decades in relation to environmental conditions. We identified a shift in functional structure between 1998 and 2004 which coincides with a pronounced increase in diatom and decrease in dinoflagellate abundances, and we provide a mechanistic explanation for this taxonomic change. Early in the 2000s, the phytoplankton functional structure shifted from slow growing, autumn blooming, mixotrophic organisms, towards earlier blooming and faster-growing microalgae. Warming and decreasing dissolved phosphorus concentrations were linked to this rapid reorganization of the functional structure. We identified a potential link between this shift and dissolved nutrient concentrations, and we hypothesise that organisms blooming early and displaying high growth rates efficiently take up nutrients which then are no longer available to late bloomers. Moreover, we identified that the above-mentioned functional change may have bottom-up consequences, through a food quality-driven negative influence on copepod abundances. Overall, our study highlights that, by altering the phytoplankton functional composition, global and regional changes may have profound long-term impacts on coastal ecosystems, impacting both food-web structure and biogeochemical cycles.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 23
    Publication Date: 2023-01-17
    Description: In this paper we present the ground response analyses (GRA) of a site where an industrial facility is planned. Because of its location on an active normal fault system known as a relevant seismic gap, the Mt. Morrone Fault system (MMF), and at the edge of a basin filled with slow velocity continental deposits, a inter-disciplinary and non-standard approach has been applied to assess the seismic input of the dynamic numerical analyses. It includes geological, seismological, geotechnical and engineering contributions. Two fault scenarios, MMF1 and MMF2, were considered and scenario-based (SSHA) and probabilistic (time-dependent, TD, and time-independent, TI) seismic hazard (PSHA) analyses were implemented. Comparison among the spectra corresponding to the 90th percentile of the SSHA statistical distribution and the PSHA average ones, shows that the MMF2 has values similar to the TD model. The SSHA 90th percentile distribution was selected as target spectra to retrieve the seismic input for GRA. Nonlinear numerical simulations of seismic wave propagation were implemented to derive surface ground motion parameters. GRA acceleration response spectra and their PGA are notably higher, and thus on the safety site, than those obtained following the Italian code approach for seismic resistant buildings. These results confirm that a scenario-based methodology can better capture the shaking effect in near-field conditions, avoiding possibly unconservative underestimations of the seismic actions and in view of a more robust performance-based approach used by engineers for either new design and/or assessment/retrofit purposes of the built environment.
    Description: Published
    Description: 106970
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 24
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    Wiley
    In:  EPIC3Rapid Communications in Mass Spectrometry, Wiley, 36(23), pp. e9401-e9401, ISSN: 0951-4198
    Publication Date: 2023-01-17
    Description: Rationale More than half of surveyed microalgae and over 90% of harmful algae have an obligate requirement for vitamin B12, but methods for directly measuring dissolved B12 in seawater are scarce due to low concentrations and rapid light-induced hydrolysis. Methods We present a method to detect and measure the four main congeners of vitamin B12 dissolved in seawater. The method includes solid-phase extraction, separation by ultrahigh-performance liquid chromatography and detection by triple-quadrupole tandem mass spectrometry utilizing an electrospray ion source. This method was applied to coastal field samples collected in the German Bay, Baltic Sea and the Danish Limfjord system. Results The total dissolved B12 pool ranged between 0.5 and 2.1 pM. Under ambient conditions methyl-B12 and adenosyl-B12 were nearly fully hydrolyzed to hydroxy-B12 in less than 1 h. Hydroxy-B12 and a novel, corresponding isomer were the main forms of B12 found at all field sites. This isomer eluted well after the OH-B12 peak and was also detected in commercially available OH-B12. Both compounds showed very high similarity in their collision-induced dissociation spectra. Conclusions The high instability of the biologically active forms of Me-B12 and Ado-B12 towards hydrolysis was shown, highlighting the importance of reducing the duration of the extraction protocol. In addition, the vitamin B12 pool in the study area was mostly comprised of a previously undescribed isomer of OH-B12. Further studies into the structure of this isomer and its bioavailability are needed.
    Repository Name: EPIC Alfred Wegener Institut
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  • 25
    facet.materialart.
    Unknown
    Wiley
    In:  EPIC3Rapid Communications in Mass Spectrometry, Wiley, 36(23), pp. e9401-e9401, ISSN: 0951-4198
    Publication Date: 2023-01-17
    Description: Rationale More than half of surveyed microalgae and over 90% of harmful algae have an obligate requirement for vitamin B12, but methods for directly measuring dissolved B12 in seawater are scarce due to low concentrations and rapid light-induced hydrolysis. Methods We present a method to detect and measure the four main congeners of vitamin B12 dissolved in seawater. The method includes solid-phase extraction, separation by ultrahigh-performance liquid chromatography and detection by triple-quadrupole tandem mass spectrometry utilizing an electrospray ion source. This method was applied to coastal field samples collected in the German Bay, Baltic Sea and the Danish Limfjord system. Results The total dissolved B12 pool ranged between 0.5 and 2.1 pM. Under ambient conditions methyl-B12 and adenosyl-B12 were nearly fully hydrolyzed to hydroxy-B12 in less than 1 h. Hydroxy-B12 and a novel, corresponding isomer were the main forms of B12 found at all field sites. This isomer eluted well after the OH-B12 peak and was also detected in commercially available OH-B12. Both compounds showed very high similarity in their collision-induced dissociation spectra. Conclusions The high instability of the biologically active forms of Me-B12 and Ado-B12 towards hydrolysis was shown, highlighting the importance of reducing the duration of the extraction protocol. In addition, the vitamin B12 pool in the study area was mostly comprised of a previously undescribed isomer of OH-B12. Further studies into the structure of this isomer and its bioavailability are needed.
    Repository Name: EPIC Alfred Wegener Institut
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  • 26
    Publication Date: 2024-02-07
    Description: Responding to societal challenges requires an understanding of how institutional change happens or does not happen. In the context of flood risk reduction, a central impediment of transformational change is a struggle over how public participation is understood and practiced. Risk institutions are often portrayed as resistant to change, which overlooks the individuals within institutions who struggle to implement innovative power-sharing approaches/arrangements. Using two rounds of qualitative interviews spread over 5 years, this research identifies factions within the risk sector—those who view participation as awareness raising and those who are struggling to make participation part of a wider commitment to power-sharing: a group that, for the purpose of this analysis, we call “mavericks.” Through focus on how mavericks struggle for change, this analysis uncovers tensions that arise as individuals attempt to alter prevailing knowledge-practices. The findings highlight the importance of experiential learning, active listening, and the alteration of space. By applying a relational conceptualisation, we explore how mavericks advocate for relationship building, which alters spaces of public participation and, in that way, lays the foundation for transformational social innovations. The conclusions offer flood risk researchers perspective on the institutional struggles that preconfigure how frontrunner projects are or are not able to facilitate the community participation needed to successfully implement societal transformations.
    Repository Name: EPIC Alfred Wegener Institut
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  • 27
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    Elsevier
    In:  EPIC3International Journal of Disaster Risk Reduction, Elsevier, 68, pp. 102699-102699, ISSN: 2212-4209
    Publication Date: 2024-02-07
    Description: Community engagement for disaster risk reduction has become central to participatory emergency management. In neoliberal contexts, publics are increasingly portrayed as responsible for preparing and responding to disasters, while at the same time and contradictorily, they are engaged by the state to encourage compliance with top-down policies and directives. This is happening while incremental budget cuts reinforce the operationalisation of community engagement as information dissemination and service delivery. In this paper we scrutinize the ways in which community engagement for disaster risk reduction has been governed and translated into practice in Australia, focusing on the experiences of the practitioners and community representatives doing community engagement in a peri-urban and multi-hazard area of Victoria. We identify and discuss the role of connectors—individuals fostering connections within and among state-led emergency services, local government, and publics—in negotiating change and building relationships. Our analysis shows how the political economy of state-led emergency management hinders the efforts of connectors, contributing to disconnection between publics, community representatives, and emergency agencies. In navigating the bureaucratic, temporal, and financial constraints of state-led community engagement, the emergency sector is missing opportunities to listen, learn, and work with connectors. The result is missed opportunities to build meaningful connections with publics for disaster risk reduction.
    Repository Name: EPIC Alfred Wegener Institut
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  • 28
    Publication Date: 2023-09-22
    Description: Primary consumers in aquatic ecosystems are frequently limited by the quality of their food, often expressed as phytoplankton elemental and biochemical composition. However, the effects of these food quality indicators vary across studies, and we lack an integrated understanding of how elemental (e.g. nitrogen, phosphorus) and biochemical (e.g. fatty acid, sterol) limitations interactively influence aquatic food webs. Here, we present the results of a meta-analysis using 〉100 experimental studies, confirming that limitation by N, P, fatty acids, and sterols all have significant negative effects on zooplankton performance. However, effects varied by grazer response (growth vs. reproduction), specific manipulation, and across taxa. While P limitation had greater effects on zooplankton growth than fatty acids overall, P and fatty acid limitation had equal effects on reproduction. Furthermore, we show that: nutrient co-limitation in zooplankton is strong; effects of essential fatty acid limitation depend on P availability; indirect effects induced by P limitation exceed direct effects of mineral P limitation; and effects of nutrient amendments using laboratory phytoplankton isolates exceed those using natural field communities. Our meta-analysis reconciles contrasting views about the role of various food quality indicators, and their interactions, for zooplankton performance, and provides a mechanistic understanding of trophic transfer in aquatic environments.
    Repository Name: EPIC Alfred Wegener Institut
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  • 29
    Publication Date: 2023-09-22
    Description: Ecological stability refers to a range of concepts used to quantify how species and environments change over time and in response to disturbances. Most empirically tractable ecological stability metrics assume that systems have simple dynamics and static equilibria. However, ecological systems are typically complex and often lack static equilibria (e.g., predator–prey oscillations, transient dynamics, chaos). Failing to account for these factors can lead to biased estimates of stability, in particular, by conflating effects of observation error, process noise, and underlying deterministic dynamics. To distinguish among these processes, we combine three existing approaches: state space models; delay embedding methods; and particle filtering. Jointly, these provide something akin to a deterministically “detrended” version of the coefficient of variation, separately tracking variability due to deterministic dynamics versus stochastic perturbations. Moreover, these variability estimates can be used to forecast dynamics, classify underlying sources of stochastic dynamics, and estimate the “exit time” before a state change takes place (e.g., local extinction events). Importantly, the time-delay embedding methods that we employ make very few assumptions about the functions governing deterministic dynamics, which facilitates applications in systems with limited data and a priori biological knowledge. To demonstrate how complex dynamics without static equilibria can bias ecological stability estimates, we analyze simulated time series of abundance dynamics in a system with time-varying carrying capacity and empirically observed abundance dynamics of the green algae Chlamydomonas terricola grown in a diverse microcosm mixture under variable temperature conditions. We show that stability estimates based on raw observations greatly overestimate temporal variability and fail to accurately forecast time to extinction. In contrast, joint application of state space modeling, delay embedding, and particle filters were able to: (1) correctly quantify the contributions of deterministic versus stochastic variability; (2) successfully estimate “true” abundance dynamics; and (3) correctly forecast time to extinction. Our results therefore demonstrate the importance of accounting for effects of complex, nonstatic dynamics in studies of ecological stability and provide an empirically tractable and flexible toolkit for conducting these measurements.
    Repository Name: EPIC Alfred Wegener Institut
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  • 30
    Publication Date: 2023-09-18
    Description: Habitat forming ecosystem engineers play critical roles in structuring coastal seascapes. Many ecosystem engineers, such as seagrasses and epifaunal bivalves, are known to have positive effects on sediment stability and increase coastal protection and ecosystem resilience. Others, such as bioturbating infaunal bivalves, may instead destabilize sediment. However, despite the common co-occurrence of seagrasses and bivalves in coastal seascapes, little is known of their combined effects on sediment dynamics. Here, we used wave flumes to compare sediment dynamics in monospecific and multispecific treatments of eelgrass, Zostera marina, and associated bivalves (infaunal Limecola balthica, infaunal Cerastoderma edule, epifaunal Magellana gigas) under a range of wave exposures. Eelgrass reduced bedload erosion rates by 25–50%, with digital elevation models indicating that eelgrass affected the sediment micro-bathymetry by decreasing surface roughness and ripple sizes. Effects of bivalves on sediment mobilization were species-specific; L. balthica reduced erosion by 25%, C. edule increased erosion by 40%, while M. gigas had little effect. Importantly, eelgrass modified the impacts of bivalves: the destabilizing effects of C. edule vanished in the presence of eelgrass, while we found positive additive effects of eelgrass and L. balthica on sediment stabilization and potential for mutual anchoring. Such interspecific interactions are likely relevant for habitat patch emergence and resilience to extreme wave conditions. In light of future climate scenarios where increasing storm frequency and wave exposure threaten coastal ecosystems, our results add a mechanistic understanding of sediment dynamics and interactions between ecosystem engineers, with relevance for management and conservation.
    Repository Name: EPIC Alfred Wegener Institut
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  • 31
    Publication Date: 2023-09-19
    Description: The last deglaciation was characterized by a sequence of abrupt climate events thought to be linked to rapid changes in Atlantic meridional overturning circulation (AMOC). The sequence includes a weakening of the AMOC after the Last Glacial Maximum (LGM) during Heinrich Stadial 1 (HS1), which ends with an abrupt AMOC amplification at the transition to the Bølling/Allerød (B/A). This transition occurs despite persistent deglacial meltwater fluxes that counteract vigorous North Atlantic deep-water formation. Using the Earth system model COSMOS with a range of deglacial boundary conditions and reconstructed deglacial meltwater fluxes, we show that deglacial CO2 rise and ice sheet decline modulate the sensitivity of the AMOC to these fluxes. While declining ice sheets increase the sensitivity, increasing atmospheric CO2 levels tend to counteract this effect. Therefore, the occurrence of a weaker HS1 AMOC and an abrupt AMOC increase in the presence of meltwater, might be explained by these effects, as an alternative to or in combination with changes in the magnitude or routing of meltwater discharge.
    Repository Name: EPIC Alfred Wegener Institut
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  • 32
    Publication Date: 2023-11-16
    Description: Although often speculated, the link between theMiddle Triassic shoshonitic magmatismat the NE margin of the Adria plate and the subduction-related metasomatismof the Southern Alps Sub-Continental Lithospheric Mantle (SCLM) has never been constrained. In this paper, a detailed geochemical and petrological characterization of the lavas, dykes and ultramafic cumulates belonging to the shoshonitic magmatic event that shaped the Dolomites (Southern Alps) was used tomodel the composition and evolution of the underlying SCLMin the time comprised between the Variscan subduction and the opening of the Alpine Tethys. Geochemical models and numerical simulations enabled us to define that 5–7% partial melting of an amphibole + phlogopite-bearing spinel lherzolite, similar to the Finero phlogopite peridotite, can account for the composition of the primitive Mid-Triassic SiO2- saturated to -undersaturated melts with shoshonitic affinity (87Sr/86Sri = 0.7032–0.7058; 143Nd/144Ndi = 0.51219–0.51235; Mg # ~ 70; ~1.1 wt% H2O). By taking into account the H2O content documented in mineral phases from the Finero phlogopite peridotite, it is suggested that the Mid-Triassic SCLM source was able to preserve a significant enrichment and volatile content (600–800 ppm H2O) for more than 50 Ma, i.e. since the slab-related metasomatismconnected to the Variscan subduction. The partialmelting of a Finero-like SCLM represents the exhaustion of the subduction-related signature in the Southern Alps lithosphere that predated the Late Triassic-Early Jurassic asthenospheric upwelling related to the opening of the Alpine Tethys.
    Description: Published
    Description: 105856
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: 3V. Proprietà chimico-fisiche dei magmi e dei prodotti vulcanici
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 33
    Publication Date: 2023-11-16
    Description: Excessive nonphysical energy dissipation is a problem in Smoothed Particle Hydrodynamics (SPH) when modeling free surface waves, resulting in a significant decrease in wave amplitude within a few wavelengths for progressive waves. This dissipation poses a limitation to the physical scale of SPH applications involving water wave propagation. Some prior solutions to this wave decay problem rely on elaborate schemes, which require a complex, or non-straightforward, implementation. Other approaches demand large smoothing lengths that lead to longer simulation times and potential degradation of the results. In this work we present an approach based on a kernel gradient correction. Our scheme is fully 3D and solves the main known drawbacks of kernel gradient corrections, such as instabilities and lack of momentum conservation. The latter is ensured by adopting an averaged correction matrix, so as to conserve reciprocity during particle interactions. We test our model with a standing wave in a basin and a progressive wave train in a wave tank, and in both cases no nonphysical decay occurs. A comparison to an approach based on large smoothing factors shows advantages both in quality of the results and simulation time.
    Description: Published
    Description: 104018
    Description: 3IT. Calcolo scientifico
    Description: JCR Journal
    Keywords: WCSPH ; Wave propagation ; Coastal engineering ; Kernel correction ; Decay
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 34
    Publication Date: 2023-11-16
    Description: The attention and demand for greater social protection is increasing among the populations of all European countries. It is difficult to identify which of the structures and infrastructures, sectors and regional budgets are inefficient and/or negligent in respect of providing more social protection. In the political sphere the problem is examined from a qualitative point of view, because it is essential to have a valid decisional support system that provides useful information for structural and economic intervention programs devised to improve social protection. Regional spending on social protection is a fundamental component of individual well-being. This work is precisely aimed at assessing individual well-being in terms of technical expenses efficiency in the Italian Regions. Stochastic frontier analysis and a nonparametric deterministic model structure are the tools used to investigate the social protection determinants in the paper.
    Description: Published
    Description: 100965
    Description: 4TM. Web e Social
    Description: JCR Journal
    Keywords: Data envelopment analysis ; Technical efficiency ; Efficiency analysis
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 35
    Publication Date: 2023-11-16
    Description: The geometry, rates and kinematics of active faulting in the region close to the tip of a major crustal-scale normal fault in the Gulf of Corinth, Greece, are investigated using detailed fault mapping and new absolute dating. Fault offsets have been dated using a combination of 234U/230Th coral dates and in situ 36Cl cosmogenic exposure ages for sediments and wave-cut platforms deformed by the faults. Our results show that deformation in the tip zone is distributed across as many as eight faults arranged within ~700 m across strike, each of which deforms deposits and landforms associated with the 125 ka marine terrace of Marine Isotope Stage 5e. Summed throw-rates across strike achieve values as high as 0.3–1.6 mm/yr, values that are comparable to those at the centre of the crustal-scale fault (2–3 mm/yr from Holocene palaeoseismology and 3–4 mm/yr from GPS geodesy). The relatively high deformation rate and distributed deformation in the tip zone are discussed in terms of stress enhancement from rupture of neighbouring crustal-scale faults and in terms of how this should be considered during fault-based seismic hazard assessment.
    Description: Published
    Description: 104063
    Description: 2T. Deformazione crostale attiva
    Description: JCR Journal
    Keywords: Crustal Deformation ; Active Faults ; Absolute Dating ; Marine terraces
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 36
    Publication Date: 2024-04-23
    Description: Boreal forests cover over half of the global permafrost area and protect underlying permafrost. Boreal forest development, therefore, has an impact on permafrost evolution, especially under a warming climate. Forest disturbances and changing climate conditions cause vegetation shifts and potentially destabilize the carbon stored within the vegetation and permafrost. Disturbed permafrost-forest ecosystems can develop into a dry or swampy bush- or grasslands, shift toward broadleaf- or evergreen needleleaf-dominated forests, or recover to the pre-disturbance state. An increase in the number and intensity of fires, as well as intensified logging activities, could lead to a partial or complete ecosystem and permafrost degradation. We study the impact of forest disturbances (logging, surface, and canopy fires) on the thermal and hydrological permafrost conditions and ecosystem resilience. We use a dynamic multilayer canopy-permafrost model to simulate different scenarios at a study site in eastern Siberia. We implement expected mortality, defoliation, and ground surface changes and analyze the interplay between forest recovery and permafrost. We find that forest loss induces soil drying of up to 44%, leading to lower active layer thicknesses and abrupt or steady decline of a larch forest, depending on disturbance intensity. Only after surface fires, the most common disturbances, inducing low mortality rates, forests can recover and overpass pre-disturbance leaf area index values. We find that the trajectory of larch forests after surface fires is dependent on the precipitation conditions in the years after the disturbance. Dryer years can drastically change the direction of the larch forest development within the studied period.
    Repository Name: EPIC Alfred Wegener Institut
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  • 37
    Publication Date: 2024-05-07
    Description: Previous field studies in the Southern Ocean (SO) indicated an increased occurrence and dominance of cryptophytes over diatoms due to climate change. To gain a better mechanistic understanding of how the two ecologically important SO phytoplankton groups cope with ocean acidification (OA) and iron (Fe) availability, we chose two common representatives of Antarctic waters, the cryptophyte Geminigera cryophila and the diatom Pseudo-nitzschia subcurvata. Both species were grown at 2°C under different pCO2 (400 vs. 900 μatm) and Fe (0.6 vs. 1.2 nM) conditions. For P. subcurvata, an additional high pCO2 level was applied (1400 μatm). At ambient pCO2 under low Fe supply, growth of G. cryophila almost stopped while it remained unaffected in P. subcurvata. Under high Fe conditions, OA was not beneficial for P. subcurvata, but stimulated growth and carbon production of G. cryophila. Under low Fe supply, P. subcurvata coped much better with OA than the cryptophyte, but invested more energy into photoacclimation. Our study reveals that Fe limitation was detrimental for the growth of G. cryophila and suppressed the positive OA effect. The diatom was efficient in coping with low Fe, but was stressed by OA while both factors together strongly impacted its growth. The distinct physiological response of both species to OA and Fe limitation explains their occurrence in the field. Based on our results, Fe availability is an important modulator of OA effects on SO phytoplankton, with different implications on the occurrence of cryptophytes and diatoms in the future.
    Repository Name: EPIC Alfred Wegener Institut
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  • 38
    Publication Date: 2023-11-24
    Description: During the middle Eocene to early Oligocene Earth transitioned from a greenhouse to an icehouse climate state. The interval comprises the Middle Eocene Climatic Optimum (MECO; ~40 Ma) and a subsequent long-term cooling trend that culminated in the Eocene-Oligocene transition (EOT; ~34 Ma) with the Oi-1 glaciation. Here, we present a refined calcareous nannofossil biostratigraphy and an orbitally tuned age model for the Monte Cagnero (MCA) section spanning the middle Eocene to the early Oligocene (~41 to ~33 Ma). Spectral analysis of magnetic susceptibility (MS) data displays strong cyclicities in the orbital frequency band allowing us to tune the identified 405 kyr eccentricity minima in the MS record to their equivalents in the astronomical solution. Our orbitally tuned age model allows us to estimate the position and duration of polarity chrons (C18 to C13) and compare them with other standard and orbitally tuned ages. We were also able to constrain the timing and duration of the MECO event, which coincides with a minimum in the 2.4 Myr and 405 kyr eccentricity cycles. Our study corroborates the previous estimated age for the base of the Rupelian stage (33.9 Ma) and estimates the base of the Priabonian stage in the MCA section to be at 37.4 Ma. Finally, calcareous nannofossils with known paleoenvironmental preferences suggest a gradual shift from oligotrophic to meso-eutrophic conditions with an abrupt change at ~36.8 Ma. Besides, nannofossil assemblages suggest that enhanced nutrient availability pre- ceded water cooling at the late Eocene. Altogether, this evidence points to a poorly developed water column stratification prior to the cooling trend.
    Description: Published
    Description: 110563
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: 5A. Ricerche polari e paleoclima
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 39
    Publication Date: 2023-11-16
    Description: The increasing dinosaur record from Italy questioned classic palaeogeographic scenarios for the Central Mediterranean area and suggest the proximity of landmass areas and a geographical connection between Gondwana and Laurasia during Cretaceous times. Besides several track-sites and exceptionally-preserved specimens (e.g. Scipionyx samniticus), the Italian dinosaur record also consists of isolated bones, among which the bone fragment of a theropod discovered in north-western Sicily. The bone occurs in a shallowwater carbonate succession (i.e. Pizzo Muletta, Palermo Mountains) pertaining to the Panormide Carbonate Platform (PCP). The bone was previously ascribed to the Cenomanian, strongly supporting the hypothesis of a land bridge connecting Gondwana and Adria via PCP. More recently, new sedimentological and biostratigraphic studies on the Pizzo Muletta succession have been carried out. The obtained results allow to predate the stratigraphic position of the dinosaur bone to the late Aptianeearly Albian and to assess a detailed AptianeCenomanian evolution of this sector of the PCP. In particular, the karstic overprint of Cenomanian rudist limestones indicate a subaerial exposure of the platform preceding its drowning during latest Cenomanian times. The new assumptions allow to extend the temporal duration of the intermittent land bridge between Gondwana and Laurasia at least from Aptian to Cenomanian times and to add further evidences of the dominant tectonic control affecting the Western Tethys during Cretaceous times.
    Description: Published
    Description: 104919
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 40
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    Wiley
    In:  EPIC3Limnology and Oceanography Methods, Wiley, 20(9), pp. 568-580, ISSN: 1541-5856
    Publication Date: 2024-04-03
    Description: The fluorophore [2-(4-pyridyl)-5{[4-dimethylaminoethyl-aminocarbamoyl-methoxy]phenyl}oxazole], in short PDMPO, is incorporated in newly polymerized silica in diatom frustules and thereby provides a tool to estimate Si uptake, study diatom cell cycles but also determine mortality-independent abundance-based species specific-growth rates in cultures and natural assemblages. In this study, the theoretical framework and applicability of the PDMPO staining technique to estimate diatom species specific-growth rates were investigated. Three common polar diatom species, Pseudo-nitzschia subcurvata, Chaetoceros simplex, and Thalassiosira sp., chosen in order to cover a broad range of species specific frustule and life-cycle characteristics, were incubated over 24 h in control (no PDMPO) and with 0.125 and 0.6 μM PDMPO addition, respectively. Results indicate that specific-growth rates of the species tested were not affected in both treatments with PDMPO addition. The specific-growth rate estimates based on the PDMPO staining patterns (μPDMPO) were comparable and more robust than growth rates estimated from the changes in cell concentrations (μcc). This technique also allowed to investigate and highlight the importance of the illumination cycle (light and dark phases) on cell division in diatoms.
    Repository Name: EPIC Alfred Wegener Institut
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  • 41
    Publication Date: 2024-04-03
    Description: The redox speciation of iron was determined during the iron fertilization LOHAFEX and for the first time, the chemiluminescence assay of filtered and unfiltered samples was systematically compared. We hypothesize that higher chemiluminescence in unfiltered samples was caused by Fe(II) adsorbed onto biological particles. Dissolved and particulate Fe(II) increased in the mixed layer steadily 6-fold during the first two weeks and decreased back to initial levels by the end of LOHAFEX. Both Fe(II) forms did not show diel cycles downplaying the role of photoreduction. The chemiluminescence of unfiltered samples across the patch boundaries showed strong gradients, correlated significantly to biomass and the photosynthetic efficiency and were higher at night, indicative of a biological control. At 150 m deep, a secondary maximum of dissolved Fe(II) was associated with maxima of nitrite and ammonium despite high oxygen concentrations. We hypothesize that during LOHAFEX, iron redox speciation was mostly regulated by trophic interactions.
    Repository Name: EPIC Alfred Wegener Institut
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  • 42
    Publication Date: 2024-04-03
    Description: Marine planktonic eukaryotes play critical roles in global biogeochemical cycles and climate. However, their poor representation in culture collections limits our understanding of the evolutionary history and genomic underpinnings of planktonic ecosystems. Here, we used 280 billion Tara Oceans metagenomic reads from polar, temperate, and tropical sunlit oceans to reconstruct and manually curate more than 700 abundant and widespread eukaryotic environmental genomes ranging from 10 Mbp to 1.3 Gbp. This genomic resource covers a wide range of poorly characterized eukaryotic lineages that complement long-standing contributions from culture collections while better representing plankton in the upper layer of the oceans. We performed the first, to our knowledge, comprehensive genome-wide functional classification of abundant unicellular eukaryotic plankton, revealing four major groups connecting distantly related lineages. Neither trophic modes of plankton nor its vertical evolutionary history could completely explain the functional repertoire convergence of major eukaryotic lineages that coexisted within oceanic currents for millions of years.
    Repository Name: EPIC Alfred Wegener Institut
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  • 43
    Publication Date: 2024-04-09
    Description: Epibenthic dinoflagellates occur globally and include many toxin-producing species of concern to human health and benthic ecosystem function. Such benthic harmful algal blooms (BHABs) have been well described from tropical and sub-tropical coastal environments, but assessments from north temperate waters, e.g., northern Europe, and polar regions are scarce. The present study addressed the biodiversity and distribution of potentially toxic epibenthic dinoflagellate populations along the west coast of Sweden (Kattegat-Skagerrak) by morphological and molecular criteria. Morphological analysis conducted by light- and electron-microscopy was then linked by DNA barcoding of the V4 region of 18S rRNA gene sequences to interpret taxonomic and phylogenetic relationships. The presence of two potentially toxigenic epibenthic dinoflagellates, Prorocentrum lima (Ehrenberg) F.Stein and Coolia monotis Meunier was confirmed, along with a description of their spatial and temporal distribution. For P. lima, one third of the cell abundance values exceeded official alarm thresholds for potentially toxic BHAB events (〉1000 cells gr–1 of macroalgae fresh weight). The same species were recorded consecutively for two summers, but without significant temporal variation in cell densities. SEM analyses confirmed the presence of other benthic Prorocentrum species: P. fukuyoi complex, P. cf. foraminosum and P. cf. hoffmannianum. Analyses of the V4 region of the 18S rRNA gene also indicated the presence P. compressum, P. hoffmannianum, P. foraminosum, P. fukuyoi, and P. nanum. These findings provide the first biogeographical evidence of toxigenic benthic dinoflagellates along the west coast of Sweden, in the absence of ongoing monitoring to include epibenthic dinoflagellates. Harmful events due to the presence of Coolia at shellfish aquaculture sites along the Kattegat-Skagerrak are likely to be rather marginal because C. monotis is not known to be toxigenic. In any case, as a preliminary assessment, the results highlight the risk of diarrhetic shellfish poisoning (DSP) events caused by P. lima, which may affect the development and sustainability of shellfish aquaculture in the region.
    Repository Name: EPIC Alfred Wegener Institut
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  • 44
    Publication Date: 2024-04-09
    Description: The marine dinoflagellate Alexandrium Halim represents perhaps the most significant and intensively studied genus with respect to species diversity, life history strategies, toxigenicity, biogeographical distribution, and global magnitude and consequences harmful algal blooms (HABs). The socioeconomic impacts, environmental and human health risks, and mitigation strategies for toxigenic Alexandrium blooms have also been explored in recent years. Human adaptive actions based on future scenarios of bloom dynamics and shifts in biogeographical distribution under climate-change parameters remain under development and not yet implemented on a regional scale. In the CoCliME (Co-development of climate services for adaptation to changing marine ecosystems) project these issues were addressed with respect to past, current and anticipated future status of key HAB genera and expected benefits of enhanced monitoring. Data on the distribution and frequency of Alexandrium blooms related to paralytic shellfish toxin (PST) events from key CoCliME Case Study areas, comprising the North Sea and adjacent Kattegat-Skagerrak, Norwegian Sea, and Baltic Sea, and eastern North Atlantic marginal seas, were evaluated in a contemporary and historical context over the past several decades. The first evidence of possible biogeographical expansion of Alexandrium taxa into eastern Arctic gateways was provided from DNA barcoding signatures. Various key climate change indicators, such as salinity, temperature, and water-column stratification, relevant to Alexandrium bloom initiation and development were identified. The possible influence of changing variables on bloom dynamics, magnitude, frequency and spatial and temporal distribution were interpreted in the context of regional ocean climate models. These climate change impact indicators may play key roles in selecting for the occurrence and diversity of Alexandrium species within the broader microeukaryote communities. For example, shifts to higher temperature and lower salinity regimes predicted for the southern North Sea indicate the potential for increased Alexandrium blooms, currently absent from this area. Ecological and socioeconomic impacts of Alexandrium blooms and effects on fisheries and aquaculture resources and coastal ecosystem function are evaluated, and, where feasible, effective adaptation strategies are proposed herein as emerging climate services.
    Repository Name: EPIC Alfred Wegener Institut
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  • 45
    Publication Date: 2024-04-09
    Description: A bloom of the fish-killing haptophyte Chrysochromulina leadbeateri in northern Norway during May and June 2019 was the most harmful algal event ever recorded in the region, causing massive mortalities of farmed salmon. Accordingly, oceanographic and biodiversity aspects of the bloom were studied in unprecedented detail, based on metabarcoding and physico-chemical and biotic factors related with the dynamics and distribution of the bloom. Light- and electron-microscopical observations of nanoplankton samples from diverse locations confirmed that C. leadbeateri was dominant in the bloom and the primary cause of associated fish mortalities. Cell counts by light microscopy and flow cytometry were obtained throughout the regional bloom within and adjacent to five fjord systems. Metabarcoding sequences of the V4 region of the 18S rRNA gene from field material collected during the bloom and a cultured isolate from offshore of Tromsøy island confirmed the species identification. Sequences from three genetic markers (18S, 28S rRNA gene and ITS region) verified the close if not identical genetic similarity to C. leadbeateri from a previous massive fish-killing bloom in 1991 in northern Norway. The distribution and cell abundance of C. leadbeateri and related Chrysochromulina species in the recent incident were tracked by integrating observations from metabarcoding sequences of the V4 region of the 18S rRNA gene. Metabarcoding revealed at least 14 distinct Chrysochromulina variants, including putative cryptic species. C. leadbeateri was by far the most abundant of these species, but with high intraspecific genetic variability. Highest cell abundance of up to 2.7 × 107 cells L − 1 of C. leadbeateri was found in Balsfjorden; the high cell densities were associated with stratification near the pycnocline (at ca. 12 m depth) within the fjord. The cell abundance of C. leadbeateri showed positive correlations with temperature, negative correlation with salinity, and a slightly positive correlation with ambient phosphate and nitrate concentrations. The spatio-temporal succession of the C. leadbeateri bloom suggests independent initiation from existing pre-bloom populations in local zones, perhaps sustained and supplemented over time by northeastward advection of the bloom from the fjords.
    Repository Name: EPIC Alfred Wegener Institut
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  • 46
    Publication Date: 2024-04-17
    Description: The term ‘destructive fishing’ appears in multiple international policy instruments intended to improve outcomes for marine biodiversity, coastal communities and sustainable fisheries. However, the meaning of ‘destructive fishing’ is often vague, limiting effectiveness in policy. Therefore, in this study, we systematically reviewed the use of ‘destructive fishing’ in three record types: academic literature, media articles and policy documents between 1976 and 2020. A more detailed analysis was performed on subsets of these records, considering the extent to which the term is characterised, geographic distribution of use, and specific impacts and practices associated with the term. We found that use of ‘destructive fishing’ relative to the generic term ‘fisheries’ has increased since the 1990s. Records focussed predominantly on fishing practices in South-eastern Asia, followed by Southern Asia and Europe. The term was characterised in detail in only 15% of records. Habitat damage and blast/poison fishing were the most associated ecological impacts and gear/practices, respectively. Bottom trawling and unspecified net fishing were regularly linked to destructive fishing. Importantly, the three record types use the term differently. Academic literature tends to specifically articulate the negative impacts, while media articles focus generally on associated gears/practices. Significant regional variation also exists in how the term is used and what phenomena it is applied to. This study provides evidence and recommendations to inform stakeholders in any future pursuit of a unified definition of ‘destructive fishing’ to support more meaningful implementation of global sustainability goals.
    Repository Name: EPIC Alfred Wegener Institut
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  • 47
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    Wiley
    In:  EPIC3Multi‐Scale Biogeochemical Processes in Soil Ecosystems, Multi‐Scale Biogeochemical Processes in Soil Ecosystems, Hoboken, NJ, Wiley, pp. 157-181, ISBN: 9781119480471
    Publication Date: 2024-04-22
    Description: Tundra is experiencing more intense warming than any other ecosystem on earth. While warming is the most direct effect of climate change on tundra, warming leads to a cascade of environmental changes such as permafrost thaw, altered precipitation regimes, and increased wildfires. This chapter will first focus on how climate change is changing the environment of Arctic and subarctic tundra and then focus on how climate change is altering tundra's carbon, nitrogen, and phosphorus cycles with a focus on soils. Overall, tundra soils are shifting from being a carbon sink into a carbon source as rising temperatures increase microbial activity—a positive feedback to climate change. However, those rising temperatures are also increasing nutrient mineralization rates, which could increase ecosystem carbon storage via enhanced plant productivity as well as increase emissions of nitrous oxide, a powerful greenhouse gas. There is currently a disconnect between the large soil carbon losses measured in many in situ experiments and the strong plant carbon gains predicted by models. Ultimately, more research is needed on the interplay between tundra soils, nutrients, and plants to determine the magnitude of tundra's feedback to climate change.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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  • 48
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    Elsevier
    In:  EPIC3Remote Sensing of Environment, Elsevier, 268, pp. 112752-112752, ISSN: 0034-4257
    Publication Date: 2024-01-30
    Description: Permafrost is warming globally which leads to widespread permafrost thaw. Particularly ice-rich permafrost is vulnerable to rapid thaw and erosion, impacting whole landscapes and ecosystems. Retrogressive thaw slumps (RTS) are abrupt permafrost disturbances that expand by several meters each year and lead to an increased soil organic carbon release. Local Remote Sensing studies identified increasing RTS activity in the last two decades by increasing number of RTS or heightened RTS growth rates. However, a large-scale assessment across diverse permafrost regions and at high temporal resolution allowing to further determine RTS thaw dynamics and its main drivers is still lacking. In this study we apply the disturbance detection algorithm LandTrendr for automated large-scale RTS mapping and high temporal thaw dynamic assessment to North Siberia (8.1×106km2). We adapted and parametrised the temporal segmentation algorithm for abrupt disturbance detection to incorporate Landsat+Sentinel-2 mosaics, conducted spectral filtering, spatial masking and filtering, and a binary machine-learning object classification of the disturbance output to separate between RTS and false positives (F1 score: 0.609). Ground truth data for calibration and validation of the workflow was collected from 9 known RTS cluster sites using very high-resolution RapidEye and PlanetScope imagery. Our study presents the first automated detection and assessment of RTS and their temporal dynamics at large-scale for 2001–2019. We identified 50,895 RTS and a steady increase in RTS-affected area from 2001 to 2019 across North Siberia, with a more abrupt increase from 2016 onward. Overall the RTS-affected area increased by 331 compared to 2000 (2000: 20,158ha, 2001–2019: 66,699ha). Contrary to this, 5 focus sites show spatio-temporal variability in their annual RTS dynamics, with alternating periods of increased and decreased RTS development, indicating a close relationship to thaw drivers. The majority of identified RTS was active from 2000 onward and only a small proportion initiated during the assessment period, indicating that the increase in RTS-affected area was mainly caused by enlarging existing RTS and not by new RTS. The detected increase in RTS dynamics suggests advancing permafrost thaw and underlines the importance of assessing abrupt permafrost disturbances with high spatial and temporal resolution at large-scales. Obtaining such consistent disturbance products will help to parametrise regional and global climate change models.
    Repository Name: EPIC Alfred Wegener Institut
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  • 49
    Publication Date: 2024-05-03
    Description: Rapid changes of the biosphere observed in recent years are caused by both small and large scale drivers, like shifts in temperature, transformations in land-use, or changes in the energy budget of systems. While the latter processes are easily quantifiable, documentation of the loss of biodiversity and community structure is more difficult. Changes in organismal abundance and diversity are barely documented. Censuses of species are usually fragmentary and inferred by often spatially, temporally and ecologically unsatisfactory simple species lists for individual study sites. Thus, detrimental global processes and their drivers often remain unrevealed. A major impediment to monitoring species diversity is the lack of human taxonomic expertise that is implicitly required for large-scale and fine-grained assessments. Another is the large amount of personnel and associated costs needed to cover large scales, or the inaccessibility of remote but nonetheless affected areas. To overcome these limitations we propose a network of Automated Multisensor stations for Monitoring of species Diversity (AMMODs) to pave the way for a new generation of biodiversity assessment centers. This network combines cutting-edge technologies with biodiversity informatics and expert systems that conserve expert knowledge. Each AMMOD station combines autonomous samplers for insects, pollen and spores, audio recorders for vocalizing animals, sensors for volatile organic compounds emitted by plants (pVOCs) and camera traps for mammals and small invertebrates. AMMODs are largely self-containing and have the ability to pre-process data (e.g. for noise filtering) prior to transmission to receiver stations for storage, integration and analyses. Installation on sites that are difficult to access require a sophisticated and challenging system design with optimum balance between power requirements, bandwidth for data transmission, required service, and operation under all environmental conditions for years. An important prerequisite for automated species identification are databases of DNA barcodes, animal sounds, for pVOCs, and images used as training data for automated species identification. AMMOD stations thus become a key component to advance the field of biodiversity monitoring for research and policy by delivering biodiversity data at an unprecedented spatial and temporal resolution.
    Repository Name: EPIC Alfred Wegener Institut
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  • 50
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    Wiley
    In:  Ecology and Evolution vol. 12 no. e9549 | H2020 European Institute of Innovation and Technology, Grant/Award Number: 813360; Nederlandse Organisatie voor Wetenschappelijk Onderzoek, Grant/ Award Number: 16.161.301
    Publication Date: 2024-06-13
    Description: Monitoring community composition of Foraminifera (single-celled marine protists) pro-vides valuable insights into environmental conditions in marine ecosystems. Despitethe efficiency of environmental DNA (eDNA) and bulk-sample DNA (bulk-DNA) me-tabarcoding to assess the presence of multiple taxa, this has not been straightforwardfor Foraminifera partially due to the high genetic variability in widely used ribosomalmarkers. Here, we test the correctness in retrieving foraminiferal communities by me-tabarcoding of mock communities, bulk-DNA from coral reef sediment samples, andeDNA from their associated ethanol preservative using the recently sequenced cy-tochrome c oxidase subunit 1 (COI) marker. To assess the detection success, we com-pared our results with large benthic foraminiferal communities previously reportedfrom the same sampling sites. Results from our mock communities demonstrate thatall species were detected in two mock communities and all but one in the remainingfour. Technical replicates were highly similar in number of reads for each assigned ASVin both the mock communities and bulk-DNA samples. Bulk-DNA showed a signifi-cantly higher species richness than their associated eDNA samples, and also detectedadditional species to what was already reported at the specific sites. Our study con-firms that metabarcoding using the foraminiferal COI marker adequately retrieves thediversity and community composition of both the mock communities and the bulk-DNA samples. With its decreased variability compared with the commonly used nu-clear 18 S rRNA, the COI marker renders bulk-DNA metabarcoding a powerful tool toassess foraminiferal community composition under the condition that the referencedatabase is adequate to the target taxa.
    Keywords: bulk-sample ; DNA ; community composition ; coral reef ; environmental DNA ; foraminifera ; metabarcoding
    Repository Name: National Museum of Natural History, Netherlands
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  • 51
    Publication Date: 2024-06-20
    Description: Because continuous and high-resolution records are scarce in the polar Urals, a multiproxy study was carried out on a 54 m long sediment succession (Co1321) from Lake Bolshoye Shchuchye. The sedimentological, geochemical, pollen and chironomid data suggest that glaciers occupied the lake's catchment during the cold and dry MIS 2 and document a change in ice extent around 23.5–18 cal ka bp. Subsequently, meltwater input, sediment supply and erosional activity decreased as local glaciers progressively melted. The vegetation around the lake comprised open, herb and grass-dominated tundra-steppe until the Bølling-Allerød, but shows a distinct change to probably moister conditions around 17–16 cal ka bp. Local glaciers completely disappeared during the Bølling-Allerød, when summer air temperatures were similar to today and low shrub tundra became established. The Younger Dryas is confined by distinct shifts in the pollen and chironomid records pointing to drier conditions. The Holocene is characterised by a denser vegetation cover, stabilised soil conditions and decreased minerogenic input, especially during the local thermal maximum between c. 10 and 5 cal ka bp. Subsequently, present-day vegetation developed and summer air temperatures decreased to modern, except for two intervals, which may represent the Little Ice Age and Medieval Warm Period.
    Repository Name: EPIC Alfred Wegener Institut
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  • 52
    Publication Date: 2024-06-18
    Description: Pronounced glacial and interglacial climate cycles characterized northern ecosystems during the Pleistocene. Our understanding of the resultant community transformations and past ecological interactions strongly depends on the taxa found in fossil assemblages. Here, we present a shotgun metagenomic analysis of sedimentary ancient DNA (sedaDNA) to infer past ecosystem-wide biotic composition (from viruses to megaherbivores) from the Middle and Late Pleistocene at the Batagay megaslump, East Siberia. The shotgun DNA records of past vegetation composition largely agree with pollen and plant metabarcoding data from the same samples. Interglacial ecosystems at Batagay attributed to Marine Isotope Stage (MIS) 17 and MIS 7 were characterized by forested vegetation (Pinus, Betula, Alnus) and open grassland. The microbial and fungal communities indicate strong activity related to soil decomposition, especially during MIS17. The local landscape likely featured more open, herb-dominated areas, and the vegetation mosaic supported birds and small omnivorous mammals. Parts of the area were intermittently/partially flooded as suggested by the presence of water-dependent taxa. During MIS 3, the sampled ecosystems are identified as cold-temperate, periodically flooded grassland. Diverse megafauna (Mammuthus, Equus, Coelodonta) coexisted with small mammals (rodents). The MIS 2 ecosystems existed under harsher conditions, as suggested by the presence of cold-adapted herbaceous taxa. Typical Pleistocene megafauna still inhabited the area. The new approach, in which shotgun sequencing is supported by metabarcoding and pollen data, enables the investigation of community composition changes across a broad range of taxonomic groups and inferences about trophic interactions and aspects of soil microbial ecology.
    Repository Name: EPIC Alfred Wegener Institut
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  • 53
    Publication Date: 2024-07-05
    Repository Name: EPIC Alfred Wegener Institut
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  • 54
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Physics Letters B 294 (1992), S. 466-478 
    ISSN: 0370-2693
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Physics
    Type of Medium: Electronic Resource
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  • 55
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Physics Letters B 317 (1993), S. 474-484 
    ISSN: 0370-2693
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Physics
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  • 56
    Publication Date: 1938-02-01
    Print ISSN: 0021-8979
    Electronic ISSN: 1089-7550
    Topics: Physics
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  • 57
    Publication Date: 1938-09-01
    Print ISSN: 0034-6748
    Electronic ISSN: 1089-7623
    Topics: Electrical Engineering, Measurement and Control Technology , Physics
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  • 58
    Publication Date: 1938-09-01
    Print ISSN: 0034-6748
    Electronic ISSN: 1089-7623
    Topics: Electrical Engineering, Measurement and Control Technology , Physics
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  • 59
    Publication Date: 1938-10-01
    Print ISSN: 0034-6748
    Electronic ISSN: 1089-7623
    Topics: Electrical Engineering, Measurement and Control Technology , Physics
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  • 60
    Publication Date: 1938-08-01
    Print ISSN: 0034-6748
    Electronic ISSN: 1089-7623
    Topics: Electrical Engineering, Measurement and Control Technology , Physics
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  • 61
    Publication Date: 1938-01-01
    Print ISSN: 0361-5995
    Electronic ISSN: 1435-0661
    Topics: Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by Wiley
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  • 62
    Publication Date: 1938-01-01
    Print ISSN: 0361-5995
    Electronic ISSN: 1435-0661
    Topics: Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 63
    Publication Date: 1938-01-01
    Print ISSN: 0361-5995
    Electronic ISSN: 1435-0661
    Topics: Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 64
    Publication Date: 1938-01-01
    Print ISSN: 0361-5995
    Electronic ISSN: 1435-0661
    Topics: Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by Wiley
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  • 65
    Publication Date: 1938-01-01
    Print ISSN: 0361-5995
    Electronic ISSN: 1435-0661
    Topics: Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 66
    Publication Date: 1938-01-01
    Print ISSN: 0361-5995
    Electronic ISSN: 1435-0661
    Topics: Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 67
    Publication Date: 1938-01-01
    Print ISSN: 0361-5995
    Electronic ISSN: 1435-0661
    Topics: Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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    Publication Date: 1938-01-01
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    Electronic ISSN: 1435-0661
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    Publication Date: 1938-01-01
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    Publication Date: 1938-01-01
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    Publication Date: 1938-01-01
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    Publication Date: 1938-01-01
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    Publication Date: 1938-01-01
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    Publication Date: 1938-01-01
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    Publication Date: 1938-01-01
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    Publication Date: 1938-01-01
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    Publication Date: 1938-01-01
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    Publication Date: 1938-01-01
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    Publication Date: 1938-01-01
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    Publication Date: 1938-10-01
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    Publication Date: 1938-03-01
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    Publication Date: 1938-06-01
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    Publication Date: 1938-06-01
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    Publication Date: 1938-06-01
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    Publication Date: 1938-06-01
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    Publication Date: 1938-06-01
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    Publication Date: 1938-01-01
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    Publication Date: 1938-07-01
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    Publication Date: 1938-08-01
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    Publication Date: 1938-03-01
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    Publication Date: 1938-03-01
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    Publication Date: 1938-03-01
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    Publication Date: 1938-03-01
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    Publication Date: 1938-03-01
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    Publication Date: 1938-06-01
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    Publication Date: 1938-06-01
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    Publication Date: 1938-06-01
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    Publication Date: 1938-06-01
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    Publication Date: 1938-12-01
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    Publication Date: 1938-07-01
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    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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