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  • PANGAEA  (183,891)
  • Wiley  (109,907)
  • American Physical Society  (92,640)
  • Springer Nature  (60,982)
  • American Geophysical Union  (28,090)
  • BioMed Central  (14,038)
  • American Institute of Physics (AIP)
  • 2005-2009  (489,548)
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  • 1
    Publication Date: 2021-07-14
    Description: A major step in the "Wilson Cycle" is the splitting of a continent and the birth of a new ocean, with the consequent formation of passive plate margins. The transition from a continental to an oceanic rift can be observed today nowhere better than in the Red Sea/Gulf of Aden system. We have carried out during several years a number of expeditions in the axial portion of the Northern Red Sea, in the region where the northernmost nuclei of axial emplacement of oceanic crust can be observed. High resolution multibeam, magnetics, gravity and multichannel seismic reflection surveys from the Thetis Deep revealed rates and modes of initial pulses of sea floor spreading, velocity of S to N axial propagation of the oceanic rift, evolution of initial MORB-type crust and nature of the mantle thermal anomaly that caused the transition from a continental to an oceanic rift. The Thetis deep is made of three en echelon fault-bounded axial basins that are joined together with axial volcanic ridges and a large number of scattered small central volcanoes. The southern basin shows a strong linear magnetic anomaly corresponding to the axial neo-volcanic zone. Two negative symmetric anomalies identified as Matuyama are present in the southernmost part of this basin, suggesting that the emplacement of oceanic crust at this site started roughly 2.5 Ma, with an average half spreading rate of 6 mm/yr. The central sub-basin is also characterized by a strongly magnetic linear neo- volcanic zone that, however, is flanked only by a small, "vanishing" symmetrical negative anomaly suggesting emplacement of oceanic crust not earlier than about 1 Ma. The northern sub-basin does not show a clearly defined linear neo-volcanic zone although it displays a strong central magnetization suggesting initial emplacement of oceanic crust 〈 0.7 Ma. This pattern implies a south to north time progression of the initial emplacement of oceanic crust within the Thetis system, with a propagation rate of about 20 mm/yr. Gravity data inversions constrained by seismic data reveal that the oceanic crust extends from the axial neo-volcanic ridges toward the master faults of the axial depression with crustal thickness ranging from 4 to 6 km. The increasing thickness of basaltic crust toward the edges of the basin together with higher degree of melting, inferred by the geochemistry of the basaltic glasses, and higher central magnetization of the northernmost and youngest basin suggest a pulse of faster spreading rate at the onset of sea-floor spreading.
    Description: Published
    Description: San Francisco
    Description: 3.3. Geodinamica e struttura dell'interno della Terra
    Description: open
    Keywords: Spatial variations attributed to seafloor spreading ; Oceanic crust ; Seafloor morphology, geology, and geophysics ; Mid-ocean ridges ; 04. Solid Earth::04.01. Earth Interior::04.01.02. Geological and geophysical evidences of deep processes ; 04. Solid Earth::04.01. Earth Interior::04.01.03. Mantle and Core dynamics ; 04. Solid Earth::04.02. Exploration geophysics::04.02.04. Magnetic and electrical methods
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Oral presentation
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  • 2
    Publication Date: 2017-04-04
    Description: Volcanic tremor and low frequency events, together with infrasound signals, can represent important precursory phenomena of eruptive activity because of their strict relationship with eruptive mechanisms and with fluid flows through the volcano's feeding system. Important variations of these seismo-volcanic and infrasound signals, recorded at Mt. Etna volcano, occurred both in the medium- and short-term before the eruption, that took place on 13 May 2008. The most significant changes were observed in the frequency content and location of LP events, as well as in volcanic tremor location, that allowed us to track the magma pathway feeding the 2008 eruptive activity. The infrasound showed three different families of events linked to the activity of the three active vents: North-East crater, South-East crater and the eruptive fissure. The seismic and infrasonic variations reported, corroborated by ground deformations variations, help to develop a quantitative prediction and early-warning system for effusive and or explosive eruptions.
    Description: European Union VOLUME FP6-2004-Global-3
    Description: Published
    Description: L18307
    Description: 1.4. TTC - Sorveglianza sismologica delle aree vulcaniche attive
    Description: JCR Journal
    Description: reserved
    Keywords: Mt. Etna Eruption ; volcano seismology ; 04. Solid Earth::04.06. Seismology::04.06.08. Volcano seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 3
    Publication Date: 2017-04-04
    Description: Active volcanoes produce inaudible infrasound due to the coupling between surface magmatic processes and the atmosphere. Monitoring techniques based on infrasound measurements have been proved capable of producing information during volcanic crises. We report observations collected from an infrasound network on Mt. Etna which enabled us to detect and locate a new summit eruption on May 13, 2008 when poor weather inhibited direct observations. Three families of signals were identified that allowed the evolution of the eruption to be accurately tracked in real-time. Each family is representative of a different active vent, producing different waveforms due to their varying geometry. Several competitive models have been developed to explain the source mechanisms of the infrasonic events, but according to our studies we demonstrate that two source models coexist at Mt. Etna during the investigated period. Such a monitoring system represents a breakthrough in the ability to monitor and understand volcanic phenomena.
    Description: Published
    Description: L05304
    Description: 1.4. TTC - Sorveglianza sismologica delle aree vulcaniche attive
    Description: JCR Journal
    Description: reserved
    Keywords: Mt. Etna ; infrasound ; eruption ; volcano monitoring ; 04. Solid Earth::04.06. Seismology::04.06.08. Volcano seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 4
    Publication Date: 2017-04-04
    Description: Accepted for publication in (Geophysical Research Letters). Copyright (2009) American Geophysical Union.
    Description: It is currently impractical to measure what happens in a volcano during an explosive eruption, and up to now much of our knowledge depends on theoretical models. Here we show, by means of large-scale experiments, that the regime of explosive events can be constrained based on the characteristics of magma at the point of fragmentation and conduit geometry. Our model, whose results are consistent with the literature, is a simple tool for defining the conditions at conduit exit that control the most hazardous volcanic regimes. Besides the well-known convective plume regime, which generates pyroclastic fallout, and the vertically collapsing column regime, which leads to pyroclastic flows, we introduce an additional regime of radially expanding columns, which form when the eruptive gas-particle mixture exits from the vent at overpressure with respect to atmosphere. As a consequence of the radial expansion, a dilute collapse occurs, which favours the formation of density currents resembling natural base surges. We conclude that a quantitative knowledge of magma fragmentation, i.e. particle size, fragmentation energy and fragmentation speed, is critical for determining the eruption regime.
    Description: Research was partially funded by DPC-INGV agreement 07-09 and MUR PRIN 06
    Description: In press
    Description: 1.5. TTC - Sorveglianza dell'attività eruttiva dei vulcani
    Description: JCR Journal
    Description: open
    Keywords: explosive eruptions ; 04. Solid Earth::04.08. Volcanology::04.08.02. Experimental volcanism
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 5
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    American Geophysical Union
    In:  An edited version of this paper was published by AGU. Copyright (2009) American Geophysical Union.
    Publication Date: 2017-04-04
    Description: In this paper we investigate ground motion properties in the western part of the Pernicana fault. This is the major fault of Mount Etna and drives the dynamic evolution of the area. In a previous work, Rigano et al. (2008) showed that a significant horizontal polarization characterizes ground motion in fault zones of Mount Etna, both during earthquakes and ambient vibrations. We have performed denser microtremor measurements in the NE rift segment and in intensely deformed zones of the Pernicana fault at Piano Pernicana. This study includes mapping of azimuth-dependent horizontal-to-vertical spectral ratios along and across the fault, frequency–wave number techniques applied to array data to investigate the nature of ambient vibrations, and polarization analysis through the conventional covariance matrix method. Our results indicate that microtremors are likely composed of volcanic tremor. Spectral ratios show strong directional resonances of horizontal components around 1 Hz when measurements enter the most damaged part of the fault zone. Their polarization directions show an abrupt change, by 20° to 40°, at close measurements between the northern and southern part of the fault zone. Recordings of local earthquakes at one site in the fault zone confirm the occurrence of polarization with the same angle found using volcanic tremor. We have also found that the directional effect is not time-dependent, at least at a seasonal scale. This observation and the similar behavior of volcanic tremors and earthquake-induced ground motions suggest that horizontal polarization is the effect of local fault properties. However, the 1-Hz resonant frequency cannot be reproduced using the 1-D vertically varying model inferred from the array data analysis, suggesting a role of lateral variations of the fault zone. Although the actual cause of polarization is unknown, a role of stress-induced anisotropy and microfracture orientation in the near-surface lavas of the Pernicana fault can be hypothesized consistently with the sharp rotation of the polarization angle within the damaged fault zone.
    Description: Published
    Description: B10308
    Description: 4.1. Metodologie sismologiche per l'ingegneria sismica
    Description: JCR Journal
    Description: open
    Keywords: Pernicana fault, fault zone, volcanic tremor, polarization, directional resonance ; 04. Solid Earth::04.06. Seismology::04.06.04. Ground motion
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 6
    Publication Date: 2017-04-04
    Description: Volcanoes deform as a consequence of the rise and storage of magma; once magma reaches a critical pressure, an eruption occurs. However, how the edifice deformation relates to its eruptive behavior is poorly known. Here, we produce a joint interpretation of spaceborne InSAR deformation measurements and volcanic activity at Mt. Etna (Italy), between 1992 and 2006. We distinguish two volcano-tectonic behaviors. Between 1993 and 2000, Etna inflated with a starting deformation rate of 1 cm yr 1 that progressively reduced with time, nearly vanishing between 1998 and 2000; moreover, low-eruptive rate summit eruptions occurred, punctuated by lava fountains. Between 2001 and 2005, Etna deflated, feeding higher-eruptive rate flank eruptions, along with large displacements of the entire East-flank. These two behaviors, we suggest, result from the higher rate of magma stored between 1993 and June 2001, which triggered the emplacement of the dike responsible for the 2001 and 2002–2003 eruptions. Our results clearly show that the joint interpretation of volcano deformation and stored magma rates may be crucial in identifying impending volcanic eruptions.
    Description: This work was partly funded by INGV and the Italian DPC and was supported by ASI, the Preview Project and CRdC-AMRA. DPC-INGV Flank project providing the funds for the publication fees.
    Description: Published
    Description: L02309
    Description: 1.2. TTC - Sorveglianza geochimica delle aree vulcaniche attive
    Description: 1.5. TTC - Sorveglianza dell'attività eruttiva dei vulcani
    Description: 1.10. TTC - Telerilevamento
    Description: 3.6. Fisica del vulcanismo
    Description: 4.3. TTC - Scenari di pericolosità vulcanica
    Description: 4.5. Degassamento naturale
    Description: JCR Journal
    Description: partially_open
    Keywords: deformation ; eruptions ; Mt. Etna ; eruptive cycle ; InSAR ; 04. Solid Earth::04.01. Earth Interior::04.01.99. General or miscellaneous ; 04. Solid Earth::04.01. Earth Interior::04.01.02. Geological and geophysical evidences of deep processes ; 04. Solid Earth::04.03. Geodesy::04.03.99. General or miscellaneous ; 04. Solid Earth::04.03. Geodesy::04.03.06. Measurements and monitoring ; 04. Solid Earth::04.03. Geodesy::04.03.07. Satellite geodesy ; 04. Solid Earth::04.04. Geology::04.04.99. General or miscellaneous ; 04. Solid Earth::04.04. Geology::04.04.09. Structural geology ; 04. Solid Earth::04.04. Geology::04.04.12. Fluid Geochemistry ; 04. Solid Earth::04.07. Tectonophysics::04.07.99. General or miscellaneous ; 04. Solid Earth::04.07. Tectonophysics::04.07.02. Geodynamics ; 04. Solid Earth::04.07. Tectonophysics::04.07.07. Tectonics ; 04. Solid Earth::04.08. Volcanology::04.08.99. General or miscellaneous ; 04. Solid Earth::04.08. Volcanology::04.08.01. Gases ; 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas ; 04. Solid Earth::04.08. Volcanology::04.08.06. Volcano monitoring ; 04. Solid Earth::04.08. Volcanology::04.08.07. Instruments and techniques ; 04. Solid Earth::04.08. Volcanology::04.08.08. Volcanic risk ; 05. General::05.02. Data dissemination::05.02.03. Volcanic eruptions
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 7
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    American Geophysical Union
    In:  “Accepted for publication in (Journal of Geophysical Research). Copyright (2009) American Geophysical Union. Further reproduction or electronic distribution is not permitted.”
    Publication Date: 2017-04-04
    Description: The eruptive episode of Mount Etna’s Southeast Crater (SEC) on 16 November 2006, which culminated with phreatomagmatic explosions and a peculiar volcaniclastic flowage event, is the subject of different interpretations. Behncke (2009) and Behncke et al. (2008, 2009), interpret the explosions as resulting from mixing of flowing lava with fluid-saturated, hydrothermally altered rock, and describe the resulting flow as a low-temperature (but potentially deadly) pyroclastic density current (PDC). Norini et al. (2009) speak of gravity-induced flank collapse affecting the SEC cone, leading to the emplacement of a landslide (or debris avalanche) deposit. Finally, Ferlito et al., commenting our recent work (Behncke et al., 2009), re-propose their earlier (2007) scenario of a shallow intrusion from the SEC conduit, caused by unloading and decompression when a part of the SEC cone flank was removed (“sector collapse”), leading to the explosive opening of an eruptive fissure, which discharged a pyroclastic flow. An outstanding feature of this event is that it was not accompanied by any significant change in the seismic signal, which led us (Behncke et al. 2009) to exclude the opening of an eruptive fissure. However, Ferlito et al. point out that seismic evidence alone does not rule out their scenario, and cite the lack of seismic signals accompanying the start of the (rather voluminous, in terms of lava discharge, but purely effusive) 2004-2005 Etna eruption as support for their hypothesis. Finally, they describe what they interpret as the source fissure for the phreatomagmatic explosions and PDCs, and was the site of minor lava extrusion toward the end of the 16 November 2006 event. On their website, Ferlito et al. host a short (〈2 min) clip excerpted from a 40:54 min long video recorded by G. Tomarchio, cameraman of the Italian public television RAI, featuring only the 1425 GMT explosion and PDC. The integral, original version of that video (which was made available to INGV-CT immediately after the event) documents, amongst others, the presence of Behncke and INGV colleagues on-site, and shows a number of extremely similar explosions and PDCs over several hours prior to 1425 GMT, only on a smaller scale. As for the 1425 GMT event, the video spectacularly shows explosive activity, but nothing proving the opening of an eruptive fissure, neither does it show any landsliding as surmised by Norini et al. (2009). Our careful viewing of 1500 still photographs taken of the activity on that day, including nearly 1000 taken by INGV staff, plus other videos taken from different viewpoints (e.g., Movie S3 in the auxiliary material to our article) leads us to analogous conclusions. Videos and photographs document dozens of minor explosive, PDC-generating events before the major phreatomagmatic explosions and PDCs at 1425 GMT. The mechanisms of these events were virtually the same throughout, differing only in their magnitude. All were caused by hot, flowing lava mixing with wet, hydrothermally altered rocks making up the SEC cone’s flank that the lava was burrowing through. The “eruptive fracture” that Ferlito et al. refer to is a secondary feature, formed at the toe of a lava flow, which had flowed down the ESE side of the cone early on 16 November 2006 and was severed around noon by the progressive enlargement of the large scar eroded into the cone’s flank. Draining of the lava within the active channel of the severed flow led to accumulation of lava at the cone’s base, developing into a sort of bubble. For reasons unknown, this bubble drained during the late afternoon, yielding an extremely small flow. The pocket evacuated by this outflow subsided to become what Ferlito et al. interpret as an eruptive fissure, a single slightly elongate collapse depression, lying approximately 150 m northeast of the locus of the 1425 GMT phreatomagmatic explosions, which is well visible in aerial photographs taken after the events under discussion (Figure 1). The lava flow that Ferlito et al. claim to have sampled is the secondary flow formed by the draining of the pocket. It has no whatsoever genetic relationship with the phreatomagmatic explosions and PDCs of 1425 GMT. Another fundamental argument lies in the seismic record, and it is here that Ferlito et al. miss two major points. Firstly, unlike the seismic scenario usually observed at Etna in more than three decades of monitoring (e.g., Patanè et al., 2004), the start of the 2004-2005 lava effusion was exceptionally silent as many authors noted (e.g., Burton et al., 2005; Di Grazia et al., 2006; Corsaro et al., 2009). The onset of lava emission was indeed completely and unusually aseismic (in terms of volcano-tectonic seismicity, volcanic tremor changes, etc.), but it was also totally non-explosive, due to the nearly complete depletion in gas of the magma. Therefore, this effusive episode stands in marked contrast with the 16 November 2006 activity. It should be noted that when new, gas-rich magma moved toward the surface at a later stage of the 2004-2005 lava effusion, the volcanic tremor amplitude markedly increased (Di Grazia et al., 2006). Secondly, Ferlito et al. refer to papers (e.g., Cardaci et al., 1993; Patanè et al., 2004) which deal with the relationship between volcano-tectonic (VT) seismicity and the triggering of eruptive activity at Etna. VT seismicity covers just a part of the information contained in a seismic record (e.g., McNutt, 2000), a detail which can be easily missed by non-experts in seismology. There is indeed a variety of signals (e.g., long-period events, hybrid events, volcanic tremor, explosion quakes) related to the movement of fluids and/or magma, which can herald and accompany the opening of eruptive fractures. We did extensive cross-checking of the seismic record of the entire 2006 eruptive sequence, paying particular attention to episodes of new eruptive fissures opening. Each single event marked by the opening of new vents displaying some sort of explosive activity (this occurred during at least four of the paroxysms during the August-December 2006 eruptive sequence) shows conspicuous changes not only in the amplitude of the seismic (tremor) signal, but also in the location of the centroid of the tremor source, and frequency content, features amply discussed in our paper (Behncke et al., 2009). The migration of subsurface magma can thus be well documented, if it is accompanied by degassing. We would also like to point out that the phreatomagmatic explosions and PDCs of 1425 GMT occurred shortly after a conspicuous drop in the volcanic tremor amplitude (see Fig. 8 in Behncke et al., 2009). The lack of changes in the seismic signals concurrent with the PDC is also evident in the spectrograms (in which the frequency content excludes the occurrence of any seismic signals associated with fracturing, see Fig. 9 in Behncke et al., 2009) and in the records of all the broadband stations considered by Behncke et al. (2009), notwithstanding their vicinity to the site of the PDC-generating explosions (EBEL and ECPN are located ~1 km from the SEC, at 2899 and 3050 m elevation above sea level, respectively). Finally, the hypothesis of magma uprise at the base of the SEC cone caused by unloading related to the removal of a major portion of the cone’s flank, has been vested by Ferlito et al. (2007) in a volcanic sector collapse scenario similar to the catastrophic 1980 debris avalanche at Mount St. Helens. Volcanic sector collapse commonly takes place instantaneously, which is the contrary of what happened at the SEC on 16 November 2006. Thanks to our presence on site from the early morning onward, we were able to document how the removal of a portion of the flank of the cone occurred extremely slowly, over at least 5 hours (cf. Fig. 5 in Behncke et al., 2008). The material involved in this displacement moved at best at 50-80 m per hour, which is rather unlike the speed of volcanic debris avalanches. There was no such thing as a major landslide, and no such thing as a new eruptive fissure opening; what did happen was a very hazardous sequence of events, including phreatomagmatic explosions and quite low-temperature but fast-moving, dense pyroclastic density currents. Such volcanic phenomena deserve in-depth multidisciplinary studies, and the ongoing discussion underscores how much work is still necessary to better understand the dynamics of a versatile volcano such as Mount Etna.
    Description: Published
    Description: B12205
    Description: 1.5. TTC - Sorveglianza dell'attività eruttiva dei vulcani
    Description: JCR Journal
    Description: open
    Keywords: Volcano monitoring ; Mt. Etna ; Volcanic hazard ; instruments and techniques ; 04. Solid Earth::04.06. Seismology::04.06.08. Volcano seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 8
    Publication Date: 2017-04-04
    Description: Although 1D and 2D fast Fourier transforms (FFTs) have long been used for the filtering, interpretation, and modeling of potential-field data, 3D FFTs have not enjoyed similar popularity. This may change with the recent discovery (Caratori Tontini et al, in press, JGR) that simple 3D FFT filters can be used to transform distributions of density (or magnetization) within a box-shaped 3D volume into gravity (or magnetic) fields within the same volume.
    Description: Published
    Description: San Francisco
    Description: 3.4. Geomagnetismo
    Description: open
    Keywords: 3D Fourier transform ; Potential field ; 05. General::05.01. Computational geophysics::05.01.03. Inverse methods ; 05. General::05.01. Computational geophysics::05.01.05. Algorithms and implementation
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Poster session
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  • 9
    Publication Date: 2017-04-04
    Description: We investigate the effect of extended faulting processes and heterogeneous wave propagation on the early warning system capability to predict the peak ground velocity (PGV) from moderate to large earthquakes occurring in the southern Apennines (Italy). Simulated time histories at the early warning network have been used to retrieve early estimates of source parameters and to predict the PGV, following an evolutionary, probabilistic approach. The system performance is measured through the Effective Lead-Time (ELT), i.e., the time interval between the arrival of the first S-wave and the time at which the probability to observe the true PGV value within one standard deviation becomes stationary, and the Probability of Prediction Error (PPE), which provides a measure of PGV prediction error. The regional maps of ELT and PPE show a significant variability around the fault up to large distances, thus indicating that the system's capability to accurately predict the observed peak ground motion strongly depends on distance and azimuth from the fault.
    Description: Published
    Description: L00B07
    Description: 4.1. Metodologie sismologiche per l'ingegneria sismica
    Description: JCR Journal
    Description: reserved
    Keywords: Seismic early warning ; Southern Italy ; Synthetic seismograph ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 10
    Publication Date: 2017-04-04
    Description: The period September–November 2007 was characterized at Mount Etna by explosive activity and intense degassing. During this time interval, infrasonic signals were recorded by an infrasonic network. By a triggering procedure, about 1000 infrasonic events were found, characterized by very high signal-to-noise ratio and grouped into nine families. Successively, the spectral analysis allowed subdividing these nine families into three clusters based on the peak frequency and the quality factor of the events. Finally, by the location analysis a cluster (cluster 1) was related to the degassing activity of the northeast crater (NEC), while the other two (clusters 2 and 3) to the explosive activity of the southeast crater (SEC). The comparison between the stacked infrasonic waveforms, interpreted as generated by the vibration of large gas bubbles, and the synthetic ones, permitted to calculate radius, length of the bubble, and initial overpressure, by a genetic algorithm method. The higher overpressure values of cluster 3 compared to the cluster 2 values were in good agreement with the stronger intensity of the explosions accompanying the infrasonic events of cluster 3. The variation of both intensities and waveforms is tentatively attributed to the occasional accumulation of lithic clasts (due to moderate landslides?) on the explosive vent. Indeed, events belonging to cluster 3 were no longer observed once the landslides had ended. Finally, the daily emitted gas volume, related to the active degassing, was estimated for NEC and SEC by using the infrasonic data during the studied period.
    Description: Published
    Description: B08308
    Description: 1.4. TTC - Sorveglianza sismologica delle aree vulcaniche attive
    Description: JCR Journal
    Description: reserved
    Keywords: Mt. Etna ; Infrasound ; volcano monitoring ; 04. Solid Earth::04.06. Seismology::04.06.08. Volcano seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 11
    Publication Date: 2017-04-04
    Description: Accepted for publication in Journal of Geophysical Research. Copyright (2009) American Geophysical Union. Further reproduction or electronic distribution is not permitted.
    Description: Using thermal infrared images recorded by a permanent thermal camera network maintained on Stromboli volcano (Italy), together with satellite and helicopter-based thermal image surveys, we have compiled a chronology of the events and processes occurring before and during Stromboli’s 2007 effusive eruption. These digital data also allow us to calculate the effusion rates and lava volumes erupted during the effusive episode. At the onset of the 2007 eruption, two parallel eruptive fissures developed within the North East crater, eventually breaching the NE flank of the summit cone and extending along the eastern margin of the Sciara del Fuoco. These fed a main effusive vent at 400 m a.s.l. to feed lava flows that extended to the sea. The effusive eruption was punctuated, on 15 March, by a paroxysm with features similar to the 5 April paroxysm that occurred during the 2002-03 effusive eruption. A total of between 3.2 x 106 m3 and 11 x 106 m3 of lava was erupted during the 2007 eruption over 34 days of effusive activity. More than half of this volume was emplaced during the first 5.5 days of the eruption. Although the 2007 effusive eruption had a comparable erupted volume to the previous (2002-03) effusive eruption, it had a shorter duration and thus a mean output rate (= total volume divided by eruption duration) that was one order of magnitude greater than the 2002-03 event (~2.4 m3 s-1 compared with 0.32±0.28 m3 s-1). In this paper, we discuss similarities and differences between these two effusive events, and interpret the processes occurring in 2007 in terms of the recent dynamics witnessed at Stromboli.
    Description: This paper was partially supported by a grant to S. Calvari (Project INGV-DPC Paroxysm V2/03, 2008-2010) funded by the Istituto Nazionale di Geofisica e Vulcanologia and by the Italian Civil Protection. Satellite-based effusion rate work by A. Steffke and A. Harris was supported by NASA grant NNG04GO64G "New Tools for Advanced Hot Spot Tracking".
    Description: In press
    Description: 1.5. TTC - Sorveglianza dell'attività eruttiva dei vulcani
    Description: JCR Journal
    Description: open
    Keywords: Thermal mapping ; Stromboli ; 04. Solid Earth::04.08. Volcanology::04.08.06. Volcano monitoring
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 12
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    American Geophysical Union
    In:  An edited version of this paper was published by AGU. Copyright (2009) American Geophysical Union
    Publication Date: 2017-04-04
    Description: Three eruptive episodes during the 2006 summit eruptions of Mount Etna were exceptionally well documented by visual, seismic and thermal monitoring. The first (16 November) was strongly explosive, with vigorous Strombolian activity and ash emission from multiple vents, lava emission, and phreatomagmatic explosions generating pyroclastic density currents (PDCs). The second episode (19 November) had a rather weakly explosive component, with mild Strombolian activity but more voluminous lava emission. The third (24 November) was a moderately explosive paroxysm, with intermittent lava fountaining and generation of a tephra column as well as lava emission and PDCs. Data recorded by a thermal monitoring camera clearly document the different phases of each paroxysm, weather clouds occasionally hampering thermal monitoring. The images show a rapid onset of the volcanic activity, which during each of the paroxysms reached a peak in eruptive and thermal intensity, and then decreased gradually. The stronger phreatomagmatic explosions and PDCs on 16 and 24 November did not yield any seismic signature linked to the opening of new vents, nor were they associated with peculiar characteristics of the seismic signal. Nevertheless, eruptive styles (Strombolian activity, lava emission) and different levels in the intensity of explosive activity were generally well reflected in the amplitude and frequency content of the seismic signal, and in the source location of the volcanic tremor centroid throughout the three eruptive episodes. This multidisciplinary study, therefore, not only provides a key to distinguish between endogenous and exogenous origins of the phenomena observed, but also documents the complex magma dynamics within the volcano.
    Description: Published
    Description: B03211
    Description: 1.5. TTC - Sorveglianza dell'attività eruttiva dei vulcani
    Description: JCR Journal
    Description: reserved
    Keywords: Volcano monitoring ; Mt Etna ; volcanic hazard ; instruments and techniques ; 04. Solid Earth::04.06. Seismology::04.06.08. Volcano seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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    In:  EPIC3Max Planck Institut für Marine Mikrobiologie, Bremen., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 14
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    PANGAEA
    In:  EPIC3Alfred Wegener Institut für Polar und Meeresforschung, Max Planck Institut für Marine Mikrobiologie, Bremen., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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    In:  EPIC3Polarstern.8.2009 ANT-XXV/5., Bremerhaven, PANGAEA, 24
    Publication Date: 2019-07-17
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    PANGAEA
    In:  EPIC3Benthic habitats and Shellfish Research Group, Institute of Marine Research, PO Box 1870 Nordnes, N-5817 Bergen, Norway., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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    In:  EPIC3Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: PANGAEA Documentation , notRev
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    In:  EPIC3Bremerhaven, PANGAEA
    Publication Date: 2015-12-02
    Repository Name: EPIC Alfred Wegener Institut
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  • 19
    Publication Date: 2015-01-20
    Repository Name: EPIC Alfred Wegener Institut
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  • 20
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    PANGAEA
    In:  EPIC3Leibniz Institute of Marine Sciences, IFM-GEOMAR at the University of Kiel., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 21
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    In:  EPIC3Limnol. Oceanogr., 54(6)1862., Bremerhaven, PANGAEA, 1855
    Publication Date: 2019-07-17
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  • 22
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    In:  EPIC3Bremerhaven, PANGAEA
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  • 23
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    In:  EPIC3not given., Bremerhaven, PANGAEA
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  • 24
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    In:  EPIC3not given., Bremerhaven, PANGAEA
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    In:  EPIC3not given., Bremerhaven, PANGAEA
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    In:  EPIC3Bremerhaven, PANGAEA
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    PANGAEA
    In:  EPIC3IODP., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    PANGAEA
    In:  EPIC3Leibniz-Institut fuer Meereswissenschaften - IFM-GEOMAR, Kiel, Germany., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 29
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    In:  EPIC3not given., Bremerhaven, PANGAEA
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    In:  EPIC3not given., Bremerhaven, PANGAEA
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    In:  EPIC3not given., Bremerhaven, PANGAEA
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    In:  EPIC3not given., Bremerhaven, PANGAEA
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    In:  EPIC3not given, Bremerhaven, PANGAEA
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    In:  EPIC3not given, Bremerhaven, PANGAEA
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  • 35
    Publication Date: 2019-07-17
    Description: Atmospheric PBDEs were measured on a monthly basis in 2002-2004 at Point Petre, a rural site in the Great Lakes. Average air concentrations were 7.0 ± 13 pg m**-3 for the sum of 14BDE (excluding BDE-209), and 1.8 ± 1.5 pg m**-3 for BDE-209. Concentrations of 3 dominant congeners (i.e., BDE-47, 99, and 209) were comparable to previous measurements at remote/rural sites around the Great Lakes, but much lower than those at urban areas. Weak temperature dependence and strong linear correlations between relatively volatile congeners suggest importance of advective inputs of gaseous species. The significant correlation between BDE-209 and 183 implies their transport inputs associated with particles. Particle-bound percentages were found greater for highly brominated congeners than less brominated ones. These percentages increase with decreasing ambient temperatures. The observed gas/particle partitioning is consistent with laboratory measurements and fits well to the Junge-Pankow model. Using air mass back-trajectories, atmospheric transport to Point Petre was estimated as 76% for BDE-47, 67% for BDE-99, and 70% for BDE-209 from west-northwest and southwest directions. During the same time period, similar congener profiles and concentration levels were found at Alert in the Canadian High Arctic. Different inter-annual variations between Point Petre and Alert indicate that emissions from other regions than North America could also contribute PBDEs in the Arctic. In contrast to weak temperature effect at Point Petre, significant temperature dependence in the summertime implies volatilization emissions of PBDEs at Alert. Meanwhile, episodic observations in the wintertime were likely associated with enhanced inputs through long-range transport during the Arctic Haze period.
    Repository Name: EPIC Alfred Wegener Institut
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  • 36
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    In:  EPIC3Laboratoire d Océanographie de Villefranche (LOV) France., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    In:  EPIC3FIELAX Gesellschaft für wissenschaftliche Datenverarbeitung mbH, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 40
    Publication Date: 2019-07-16
    Repository Name: EPIC Alfred Wegener Institut
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  • 41
    Publication Date: 2022-05-25
    Description: © 2009 The Authors. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in BMC Genomics 10 (2009): 11, doi:10.1186/1471-2164-10-11.
    Description: Cold adapted or psychrophilic organisms grow at low temperatures, where most of other organisms cannot grow. This adaptation requires a vast array of sequence, structural and physiological adjustments. To understand the molecular basis of cold adaptation of proteins, we analyzed proteomes of psychrophilic and mesophilic bacterial species and compared the differences in amino acid composition and substitution patterns to investigate their likely association with growth temperatures. In psychrophilic bacteria, serine, aspartic acid, threonine and alanine are overrepresented in the coil regions of secondary structures, whilst glutamic acid and leucine are underrepresented in the helical regions. Compared to mesophiles, psychrophiles comprise a significantly higher proportion of amino acids that contribute to higher protein flexibility in the coil regions of proteins, such as those with tiny/small or neutral side chains. Amino acids with aliphatic, basic, aromatic and hydrophilic side chains are underrepresented in the helical regions of proteins of psychrophiles. The patterns of amino acid substitutions between the orthologous proteins of psychrophiles versus mesophiles are significantly different for several amino acids when compared to their substitutions in orthologous proteins of within the mesophiles or psychrophiles. Current results provide quantitative substitution preferences (or avoidance) of amino acids that lead to the adaptation of proteins to cold temperatures. These finding would help future efforts in selecting mutations for rational design of proteins with enhanced psychrophilic properties.
    Description: This work was supported by a grant from Howard Hughes Medical Institute to Queens College, CUNY, and Queens College Research Enhancement Grant.
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  • 42
    Publication Date: 2022-05-25
    Description: © 2009 Sarkar et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License. The definitive version was published in BMC Research Notes 2 (2009): 101, doi:10.1186/1756-0500-2-101.
    Description: GenBank(R) is a public repository of all publicly available molecular sequence data from a range of sources. In addition to relevant metadata (e.g., sequence description, source organism and taxonomy), publication information is recorded in the GenBank data file. The identification of literature associated with a given molecular sequence may be an essential first step in developing research hypotheses. Although many of the publications associated with GenBank records may not be linked into or part of complementary literature databases (e.g., PubMed), GenBank records associated with literature indexed in Medline are identifiable as they contain PubMed identifiers (PMIDs). Here we show that an analysis of 87,116,501 GenBank sequence files reveals that 42% are associated with a publication or patent. Of these, 71% are associated with PMIDs, and can therefore be linked to a citation record in the PubMed database. The remaining (29%) of publication-associated GenBank entries either do not have PMIDs or cite a publication that is not currently indexed by PubMed. We also identify the journal titles that are linked through citations in the GenBank files to the largest number of sequences. Our analysis suggests that GenBank contains molecular sequences from a range of disciplines beyond biomedicine, the initial scope of PubMed. The findings thus suggest opportunities to develop mechanisms for integrating biological knowledge beyond the biomedical field.
    Description: INS and HM are funded in part by a research grant from the Ellison Medical Foundation and National Library of Medicine award R01LM009725 to INS.
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  • 43
    Publication Date: 2022-05-25
    Description: © 2009 Reitzel and Tarrant. This is an open-access article distributed under the terms of the Creative Commons Attribution License. The definitive version was published in BMC Evolutionary Biology 9 (2009): 230, doi:10.1186/1471-2148-9-230.
    Description: Nuclear receptors are a superfamily of metazoan transcription factors that regulate diverse developmental and physiological processes. Sequenced genomes from an increasing number of bilaterians have provided a more complete picture of duplication and loss of nuclear receptors in protostomes and deuterostomes but have left open the question of which nuclear receptors were present in the cnidarian-bilaterian ancestor. In addition, nuclear receptor expression and function are largely uncharacterized within cnidarians, preventing determination of conserved and novel nuclear receptor functions in the context of animal evolution. Here we report the first complete set of nuclear receptors from a cnidarian, the starlet sea anemone Nematostella vectensis. Genomic searches using conserved DNA- and ligand-binding domains revealed seventeen nuclear receptors in N. vectensis. Phylogenetic analyses support N. vectensis orthologs of bilaterian nuclear receptors in four nuclear receptor subfamilies within nuclear receptor family 2 (COUP-TF, TLL, HNF4, TR2/4) and one putative ortholog of GCNF (nuclear receptor family 6). Other N. vectensis genes grouped well with nuclear receptor family 2 but represented lineage-specific duplications somewhere within the cnidarian lineage and were not clear orthologs of bilaterian genes. Three nuclear receptors were not well-supported within any particular nuclear receptor family. The seventeen nuclear receptors exhibited distinct developmental expression patterns, with expression of several nuclear receptors limited to a subset of developmental stages. N. vectensis contains a diverse complement of nuclear receptors including orthologs of several bilaterian nuclear receptors. Novel nuclear receptors in N. vectensis may be ancient genes lost from triploblastic lineages or may represent cnidarian-specific radiations. Nuclear receptors exhibited distinct developmental expression patterns, which are consistent with diverse regulatory roles for these genes. Understanding the evolutionary relationships and developmental expression of the N. vectensis nuclear receptor complement provides insight into the evolution of the nuclear receptor superfamily and a foundation for mechanistic characterization of cnidarian nuclear receptor function.
    Description: We are grateful for financial support from the Woods Hole Oceanographic Institution (WHOI) through the Tropical Research Initiative, the Ocean Life Institute (AMT), the Academic Programs Office, and to the Beacon Institute for Rivers and Estuaries (AMR).
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  • 44
    Publication Date: 2022-05-25
    Description: © 2009 The Authors. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biology Direct 4 (2009): 46, doi:10.1186/1745-6150-4-46.
    Description: Sequence related families of genes and proteins are common in bacterial genomes. In Escherichia coli they constitute over half of the genome. The presence of families and superfamilies of proteins suggest a history of gene duplication and divergence during evolution. Genome encoded protein families, their size and functional composition, reflect metabolic potentials of the organisms they are found in. Comparing protein families of different organisms give insight into functional differences and similarities. Equivalent enzyme families with metabolic functions were selected from the genomes of four experimentally characterized bacteria belonging to separate genera. Both similarities and differences were detected in the protein family memberships, with more similarities being detected among the more closely related organisms. Protein family memberships reflected known metabolic characteristics of the organisms. Differences in divergence of functionally characterized enzyme family members accounted for characteristics of taxa known to differ in those biochemical properties and capabilities. While some members of the gene families will have been acquired by lateral exchange and other former family members will have been lost over time, duplication and divergence of genes and functions appear to have been a significant contributor to the functional diversity of today’s microbes. Protein families seem likely to have arisen during evolution by gene duplication and divergence where the gene copies that have been retained are the variants that have led to distinct bacterial physiologies and taxa. Thus divergence of the duplicate enzymes has been a major process in the generation of different kinds of bacteria.
    Description: This research was supported by the Office of Science (BER), U.S. Department of Energy, Grant No. DE-FG02-08ER64511.
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  • 45
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Journal of Geophysical Research 114 (2009): F04019, doi:10.1029/2008JF001191.
    Description: Hindcasting decadal-timescale bathymetric change in estuaries is prone to error due to limited data for initial conditions, boundary forcing, and calibration; computational limitations further hinder efforts. We developed and calibrated a tidal-timescale model to bathymetric change in Suisun Bay, California, over the 1867–1887 period. A general, multiple-timescale calibration ensured robustness over all timescales; two input reduction methods, the morphological hydrograph and the morphological acceleration factor, were applied at the decadal timescale. The model was calibrated to net bathymetric change in the entire basin; average error for bathymetric change over individual depth ranges was 37%. On a model cell-by-cell basis, performance for spatial amplitude correlation was poor over the majority of the domain, though spatial phase correlation was better, with 61% of the domain correctly indicated as erosional or depositional. Poor agreement was likely caused by the specification of initial bed composition, which was unknown during the 1867–1887 period. Cross-sectional bathymetric change between channels and flats, driven primarily by wind wave resuspension, was modeled with higher skill than longitudinal change, which is driven in part by gravitational circulation. The accelerated response of depth may have prevented gravitational circulation from being represented properly. As performance criteria became more stringent in a spatial sense, the error of the model increased. While these methods are useful for estimating basin-scale sedimentation changes, they may not be suitable for predicting specific locations of erosion or deposition. They do, however, provide a foundation for realistic estuarine geomorphic modeling applications.
    Description: This study was supported by the U.S. Geological Survey’s Priority Ecosystems Science program, CALFED Bay/Delta Program, and the University of California Center for Water Resources. Use of ROMS and the CSTMS was supported by the U.S. Geological Survey, with assistance from John Warner.
    Keywords: Estuarine geomorphology ; Numerical modeling ; Sediment transport
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
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    In:  EPIC3Royal Netherlands Institute for Sea Research, Texel., Bremerhaven, PANGAEA
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    In:  EPIC3Kongsberg Maritime AS, Norway, Bremerhaven, PANGAEA, 2 p.
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    In:  EPIC3Observatoire Océanologique, Laboratoire d'Océanographie, Villefranche-sur-mer., Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 77
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
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  • 78
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2018-12-18
    Repository Name: EPIC Alfred Wegener Institut
    Type: PANGAEA Documentation , notRev
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  • 79
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    PANGAEA
    In:  EPIC3AWI/MARUM., Bremerhaven, PANGAEA
    Publication Date: 2019-07-16
    Repository Name: EPIC Alfred Wegener Institut
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  • 80
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    PANGAEA
    In:  EPIC3Meteor-Berichte, Institut für Meereskunde der Universität Hamburg, Bremerhaven, PANGAEA, 100 p.
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: PANGAEA Documentation , notRev
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  • 81
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 82
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    PANGAEA
    In:  EPIC3Alfred Wegener Institute for Polar and Marine Research, Bremerhaven., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 83
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    American Geophysical Union
    In:  EPIC3J. Geophys. Res., 114, D19201, 114, D19201., American Geophysical Union, 114
    Publication Date: 2017-10-20
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 84
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    PANGAEA
    In:  EPIC3CoralFSH Ecosystem based management of corals, fish and fisheries in the deep waters of Europe and beyond, EU-project, http://eu-fp7-coralfish.net/., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 85
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    PANGAEA
    In:  EPIC3IODP., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 86
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    PANGAEA
    In:  EPIC3IODP., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 87
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    PANGAEA
    In:  EPIC3Institut für Biogeochemie und Meereschemie, Universität Hamburg., Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 88
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    PANGAEA
    In:  EPIC3NERI, Aarhus University, Bremerhaven, PANGAEA, 5 p.
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 89
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    PANGAEA
    In:  EPIC3Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 90
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    PANGAEA
    In:  EPIC3Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 91
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    PANGAEA
    In:  EPIC3Bremerhaven, PANGAEA
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 92
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 93
    Publication Date: 2019-07-17
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  • 94
    Publication Date: 2022-05-26
    Description: © 2009 The Authors. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in BMC Biology 7 (2009): 72, doi:10.1186/1741-7007-7-72.
    Description: Recent advances in sequencing strategies make possible unprecedented depth and scale of sampling for molecular detection of microbial diversity. Two major paradigm-shifting discoveries include the detection of bacterial diversity that is one to two orders of magnitude greater than previous estimates, and the discovery of an exciting 'rare biosphere' of molecular signatures ('species') of poorly understood ecological significance. We applied a high-throughput parallel tag sequencing (454 sequencing) protocol adopted for eukaryotes to investigate protistan community complexity in two contrasting anoxic marine ecosystems (Framvaren Fjord, Norway; Cariaco deep-sea basin, Venezuela). Both sampling sites have previously been scrutinized for protistan diversity by traditional clone library construction and Sanger sequencing. By comparing these clone library data with 454 amplicon library data, we assess the efficiency of high-throughput tag sequencing strategies. We here present a novel, highly conservative bioinformatic analysis pipeline for the processing of large tag sequence data sets.The analyses of ca. 250,000 sequence reads revealed that the number of detected Operational Taxonomic Units (OTUs) far exceeded previous richness estimates from the same sites based on clone libraries and Sanger sequencing. More than 90% of this diversity was represented by OTUs with less than 10 sequence tags. We detected a substantial number of taxonomic groups like Apusozoa, Chrysomerophytes, Centroheliozoa, Eustigmatophytes, hyphochytriomycetes, Ichthyosporea, Oikomonads, Phaeothamniophytes, and rhodophytes which remained undetected by previous clone library-based diversity surveys of the sampling sites. The most important innovations in our newly developed bioinformatics pipeline employ (i) BLASTN with query parameters adjusted for highly variable domains and a complete database of public ribosomal RNA (rRNA) gene sequences for taxonomic assignments of tags; (ii) a clustering of tags at k differences (Levenshtein distance) with a newly developed algorithm enabling very fast OTU clustering for large tag sequence data sets; and (iii) a novel parsing procedure to combine the data from individual analyses. Our data highlight the magnitude of the under-sampled 'protistan gap' in the eukaryotic tree of life. This study illustrates that our current understanding of the ecological complexity of protist communities, and of the global species richness and genome diversity of protists, is severely limited. Even though 454 pyrosequencing is not a panacea, it allows for more comprehensive insights into the diversity of protistan communities, and combined with appropriate statistical tools, enables improved ecological interpretations of the data and projections of global diversity.
    Description: The International Census of Marine Microbes and the W.M. Keck Foundation award to the Marine Biological Laboratory at Woods Hole (MA) supported the pyrosequencing part of this study. Further financial support came from a grant from the Deutsche Forschungsgemeinschaft to TS (STO414/3-1). Support for the unpublished work on Cariaco Basin protists came from NSF MCB-0348407 to VE (collaborative project with S Epstein at Northeastern University, Boston, MA, USA). Financial support to AC was provided by NSF MCB-0348045. Financial support to RC was provided by the ANR-Biodiversité project Aquaparadox.
    Repository Name: Woods Hole Open Access Server
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  • 95
    Publication Date: 2022-05-26
    Description: © 2009 The Authors. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in BMC Microbiology 9 (2009): 16, doi:10.1186/1471-2180-9-16.
    Description: The Euglenozoa is a large group of eukaryotic flagellates with diverse modes of nutrition. The group consists of three main subclades – euglenids, kinetoplastids and diplonemids – that have been confirmed with both molecular phylogenetic analyses and a combination of shared ultrastructural characteristics. Several poorly understood lineages of putative euglenozoans live in anoxic environments, such as Calkinsia aureus, and have yet to be characterized at the molecular and ultrastructural levels. Improved understanding of these lineages is expected to shed considerable light onto the ultrastructure of prokaryote-eukaryote symbioses and the associated cellular innovations found within the Euglenozoa and beyond. We collected Calkinsia aureus from core samples taken from the low-oxygen seafloor of the Santa Barbara Basin (580 – 592 m depth), California. These biflagellates were distinctively orange in color and covered with a dense array of elongated epibiotic bacteria. Serial TEM sections through individually prepared cells demonstrated that C. aureus shares derived ultrastructural features with other members of the Euglenozoa (e.g. the same paraxonemal rods, microtubular root system and extrusomes). However, C. aureus also possessed several novel ultrastructural systems, such as modified mitochondria (i.e. hydrogenosome-like), an "extrusomal pocket", a highly organized extracellular matrix beneath epibiotic bacteria and a complex flagellar transition zone. Molecular phylogenies inferred from SSU rDNA sequences demonstrated that C. aureus grouped strongly within the Euglenozoa and with several environmental sequences taken from low-oxygen sediments in various locations around the world. Calkinsia aureus possesses all of the synapomorphies for the Euglenozoa, but lacks traits that are specific to any of the three previously recognized euglenozoan subgroups. Molecular phylogenetic analyses of C. aureus demonstrate that this lineage is a member of a novel euglenozoan subclade consisting of uncharacterized cells living in low-oxygen environments. Our ultrastructural description of C. aureus establishes the cellular identity of a fourth group of euglenozoans, referred to as the "Symbiontida".
    Description: This work was supported by grants to BSL from the Tula Foundation (Centre for Microbial Diversity and Evolution), the National Science and Engineering Research Council of Canada (NSERC 283091-04) and the Canadian Institute for Advanced Research, Program in Integrated Microbial Biodiversity. Funding for the collection of sediments and participation of VPE and JMB in this research was provided by the US National Science Foundation grant MCB-060484.
    Repository Name: Woods Hole Open Access Server
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  • 96
    Publication Date: 2023-03-14
    Keywords: EXP; Experiment; Experimental treatment; Experiment day; Gao_etal_09_T1; Growth rate; pH; pH meter (Mettler Toledo, USA); Salinity; see reference(s); Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 231 data points
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  • 97
    Publication Date: 2023-03-10
    Keywords: Circulation and Transfer of Pollutants in the North Sea; CO2BaseSleipner; Date/Time of event; DEPTH, water; Elevation of event; Event label; Fecal pellets, zooplankton; Fecal pellets, zooplankton, length; Fecal pellets, zooplankton, width; Latitude of event; Longitude of event; MULT; Multiple investigations; North Sea; Skagerrak; South Atlantic Ocean; VA44; VA44_1/20; VA44_10/00; VA44_100/00; VA44_101/00; VA44_102/00; VA44_103/00; VA44_104/00; VA44_105/00; VA44_106/00; VA44_107/00; VA44_108/00; VA44_109/00; VA44_11/00; VA44_110/00; VA44_111/00; VA44_112/00; VA44_113/00; VA44_114/00; VA44_115/00; VA44_116/20; VA44_117/00; VA44_118/00; VA44_119/00; VA44_12/00; VA44_120/00; VA44_121/00; VA44_122/00; VA44_123/00; VA44_124/00; VA44_125/00; VA44_126/00; VA44_127/00; VA44_128/00; VA44_129/00; VA44_13/00; VA44_14/20; VA44_15/00; VA44_16/00; VA44_17/00; VA44_18/00; VA44_19/00; VA44_2/00; VA44_20/00; VA44_21/00; VA44_22/00; VA44_23/00; VA44_24/00; VA44_25/00; VA44_26/00; VA44_27/00; VA44_28/00; VA44_29/00; VA44_3/00; VA44_30/00; VA44_31/00; VA44_32/00; VA44_33/00; VA44_34/00; VA44_35/00; VA44_36/00; VA44_37/00; VA44_38/00; VA44_39/00; VA44_4/00; VA44_40/00; VA44_41/00; VA44_42/00; VA44_43/00; VA44_44/00; VA44_45/00; VA44_46/00; VA44_47/00; VA44_48/00; VA44_49/00; VA44_5/00; VA44_50/00; VA44_51/00; VA44_52/00; VA44_53/00; VA44_55/00; VA44_57/00; VA44_58/00; VA44_59/00; VA44_6/00; VA44_60/00; VA44_61/00; VA44_62/00; VA44_64/00; VA44_65/00; VA44_66/00; VA44_7/00; VA44_71/00; VA44_72/00; VA44_73/00; VA44_74/00; VA44_75/00; VA44_76/00; VA44_77/00; VA44_78/00; VA44_79/00; VA44_8/00; VA44_80/00; VA44_81/00; VA44_83/00; VA44_84/00; VA44_85/00; VA44_86/00; VA44_87/00; VA44_88/00; VA44_89/00; VA44_9/00; VA44_90/00; VA44_91/00; VA44_92/00; VA44_93/00; VA44_94/00; VA44_95/00; VA44_96/00; VA44_97/00; VA44_98/00; VA44_99/00; Valdivia (1961); ZISCH; ZISCH methods
    Type: Dataset
    Format: text/tab-separated-values, 1611 data points
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  • 98
    Publication Date: 2023-03-10
    Keywords: alpha-Hexachlorocyclohexane; Circulation and Transfer of Pollutants in the North Sea; CO2BaseSleipner; Date/Time of event; DEPTH, sediment/rock; Elevation of event; Event label; gamma-Hexachlorocyclohexane (Lindane); Hexachlorobenzene; Latitude of event; Longitude of event; MULT; Multiple investigations; North Sea; para,para-Dichlorodiphenyldichloroethylene; Polychlorinated biphenyl; Skagerrak; South Atlantic Ocean; VA44; VA44_100/00; VA44_101/00; VA44_102/00; VA44_103/00; VA44_104/00; VA44_105/00; VA44_106/00; VA44_107/00; VA44_108/00; VA44_109/00; VA44_11/00; VA44_110/00; VA44_111/00; VA44_112/00; VA44_114/00; VA44_115/00; VA44_117/00; VA44_118/00; VA44_119/00; VA44_120/00; VA44_121/00; VA44_123/00; VA44_125/00; VA44_126/00; VA44_127/00; VA44_14/00; VA44_18/00; VA44_2/00; VA44_20/00; VA44_21/00; VA44_22/00; VA44_24/00; VA44_25/00; VA44_26/00; VA44_27/00; VA44_28/00; VA44_29/00; VA44_3/00; VA44_30/00; VA44_31/00; VA44_34/00; VA44_35/00; VA44_37/00; VA44_38/00; VA44_39/00; VA44_4/00; VA44_40/00; VA44_41/00; VA44_43/00; VA44_47/00; VA44_48/00; VA44_49/00; VA44_5/00; VA44_50/00; VA44_52/00; VA44_53/00; VA44_54/00; VA44_55/00; VA44_56/00; VA44_57/00; VA44_58/00; VA44_59/00; VA44_6/00; VA44_60/00; VA44_61/00; VA44_64/00; VA44_65/00; VA44_66/00; VA44_67/00; VA44_68/00; VA44_69/00; VA44_70/00; VA44_71/00; VA44_72/00; VA44_73/00; VA44_74/00; VA44_75/00; VA44_76/00; VA44_77/00; VA44_78/00; VA44_79/00; VA44_8/00; VA44_80/00; VA44_81/00; VA44_82/00; VA44_83/00; VA44_84/00; VA44_85/00; VA44_86/00; VA44_87/00; VA44_88/00; VA44_89/00; VA44_90/00; VA44_91/00; VA44_92/00; VA44_93/00; VA44_94/00; VA44_95/00; VA44_96/00; VA44_97/00; VA44_98/00; VA44_99/00; Valdivia (1961); ZISCH; ZISCH methods
    Type: Dataset
    Format: text/tab-separated-values, 848 data points
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  • 99
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    PANGAEA
    Publication Date: 2023-03-10
    Keywords: 12925-004; 12925-008; Alkalinity, total, flux; BENGAL; Benthic Biology and Geochemistry of a North-eastern Atlantic Abyssal Locality; Calcium carbonate, flux; Carbon, organic, dissolved, flux; Chamber number; D222/1; Date/Time of event; DEPTH, sediment/rock; Discovery (1962); Elevation of event; Event label; GBGL; Göteborg lander; Latitude of event; Longitude of event; Nitrate, flux; Phosphate, flux; South Atlantic Ocean
    Type: Dataset
    Format: text/tab-separated-values, 21 data points
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  • 100
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    PANGAEA
    In:  Institut für Geowissenschaften, Christian-Albrechts-Universität, Kiel
    Publication Date: 2023-03-10
    Keywords: GIK11917-1; Gravity corer (Kiel type); M23; M23_040; Meteor (1964); Nordost-Atlantik-Expedition 1971; SL; South Atlantic Ocean
    Type: Dataset
    Format: unknown
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