ALBERT

All Library Books, journals and Electronic Records Telegrafenberg

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
Filter
  • Books
  • Articles  (146)
  • Oxford University Press  (103)
  • De Gruyter  (43)
  • 2020-2022  (146)
  • Natural Sciences in General  (146)
Collection
  • Books
  • Articles  (146)
Years
Year
Journal
  • 1
    facet.materialart.
    Unknown
    Oxford University Press
    Publication Date: 2021-03-24
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 2
    Publication Date: 2021-03-17
    Description: An image identification method was developed with the aid of a deep convolutional neural network (CNN) and applied to the analysis of inorganic particles using electron holography. Despite significant variation in the shapes of α-Fe2O3 particles that were observed by transmission electron microscopy, this CNN-based method could be used to identify isolated, spindle-shaped particles that were distinct from other particles that had undergone pairing and/or agglomeration. The averaging of images of these isolated particles provided a significant improvement in the phase analysis precision of the electron holography observations. This method is expected to be helpful in the analysis of weak electromagnetic fields generated by nanoparticles showing only small phase shifts.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 3
    Publication Date: 2021-03-01
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 4
    Publication Date: 2021-03-01
    Description: The changes of runoff in the middle reaches of the Yellow River basin of China have received considerable attention owing to their sharply decline during recent decades. In this paper, the impacts of rainfall characteristics and land use and cover change on water yields in the Jingle sub-basin of the middle reaches of the Yellow River basin were investigated using a combination of statistical analysis and hydrological simulations. The Levenberg Marquardt and Analysis of Variance methods were used to construct multivariate, nonlinear, model equations between runoff coefficient and rainfall intensity and vegetation coverage. The land use changes from 1971 to 2017 were ascertained using transition matrix analysis. The impact of land use on water yields was estimated using the M-EIES hydrological model. The results show that the runoff during flood season (July to September) decreased significantly after 2000, whereas slightly decreasing trend was detected for precipitation. Furthermore, there were increase in short, intense, rainfall events after 2000 and this rainfall events were more conducive to flood generation. The “Grain for Green” project was carried out in 1999, and the land use in the middle reaches of the Yellow River improved significantly, which make the vegetation coverage (Vc) of the Jingle sub-basin increased by 13%. When Vc approaches 48%, the runoff coefficient decreased to the lowest, and the vegetation conditions have the greatest effect on reducing runoff. Both land use and climate can change the water yield in the basin, but for areas where land use has significantly improved, the impact of land use change on water yield plays a dominant role. The results acquired in this study provide a useful reference for water resources planning and soil and water conservation in the erodible areas of the middle reaches of the Yellow River basin.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 5
    Publication Date: 2021-03-01
    Description: Recently water resources reanalysis (WRR) global streamflow products are emerging from high- resolution global models as a means to provide long and consistent global streamflow products for assessment of global challenge such as climate change. Like any other products, the newly developed global streamflow products have limitations accurately represent the dynamics of local streamflow hydrographs. There is a need to locally evaluate and apply correction factors for better representation and make use of the data. This research focuses on the evaluation and correction of the bias embedded in the global streamflow product (WRR, 0.25°) developed by WaterGAP3 hydrological model in the upper Blue Nile basin part of Ethiopia. Three spatiotemporal dynamical bias correction schemes (temporal-spatial variable, temporal-spatial constant and spatial variable) tested in twelve watersheds of the basin. The temporal-spatial variable dynamical bias correction scheme significantly improves the streamflow estimation. The Nash-Sutcliffe coefficient (NSCE) improves by 30% and bias decreases by 19% for the twelve streamflow gauging stations applying leave one out cross-validation approach in turn. Therefore, the temporal-spatial variable scheme is applicable and can use as one method for the bias correction to use the global data for local applications in the upper Blue Nile basin.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 6
    Publication Date: 2021-03-01
    Description: Variable rate technology (VRT) in nutrient management has been developed in order to apply crop inputs according to the required amount of fertilizers. Meteorological conditions rarely differ within one field; however, differences in soil conditions responding to precipitation or evaporation results within field variations. These variations in soil properties such as moisture content, evapotranspiration ability, etc. requires site-specific treatments for the produced crops. There is an ongoing debate among experts on how to define management zones as well as how to define the required amount of fertilizers for phosphorus and nitrogen replenishment for winter wheat (Triticum aestivum L.) production. For management zone delineation, vegetation based or soil based data collection is applied, where various sensor technology or remote sensing is in help for the farmers. The objective of the study reported in this paper was to investigate the effect of soil moisture data derived from Sentinel-2 satellite images moisture index and variable rate phosphorus and nitrogen fertilizer by means of variable rate application (VRA) in winter wheat in Mezőföld, Hungary. Satellite based moisture index variance at the time of sowing has been derived, calculated and later used for data comparison. Data for selected points showed strong correlation (R2 = 0.8056; n = 6) between moisture index and yield, however generally for the whole field correlation does not appear. Vegetation monitoring has been carried out by means of NDVI data calculation. On the field level, as indicated earlier neither moisture index values at sowing nor vegetation index data was sufficient to determine yield. Winter wheat production based on VRA treatment resulted significant increase in harvested crop: 5.07 t/h in 2013 compared to 8.9 t/ha in 2018. Uniformly managed (control) areas provided similar yield as VRA treated areas (8.82 and 8.9 t/ha, respectively); however, the input fertilizer was reduced by 108 kg/ha N and increased by 37 kg/ha P.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 7
    Publication Date: 2021-03-01
    Description: The knowledge of spatio-temporal dynamics of soil moisture within the catchment is very important for rainfall–runoff modelling in flood forecasting. In this study the comparison between remotely sensed soil moisture and soil moisture estimated from the SHETRAN hydrological model was performed for small and flashy Jičinka River catchment (75.9 km2) in the Czech Republic. Due to a relatively coarse spatial resolution of satellite data, the satellite soil moisture data were downscaled, by applying the method developed by Qu et al. (2015). The sub-grid variability of soil moisture was estimated on the basis of the mean soil moisture for the grid cell and the known hydraulic soil properties. The SHETRAN model was calibrated and verified to the observed streamflow hydrographs at the catchment outlet. The good correlation between the two different soil moisture information was obtained according to the majority of applied criteria. The results of the evaluation criteria indicate that the downscaled remotely sensed soil moisture data can be used as additional criteria for the calibration and validation of hydrological models for small catchments and can contribute to a better estimation of parameters, to reduce uncertainties of hydrological models and improve runoff simulations.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 8
    Publication Date: 2021-03-01
    Description: It was shown that the use of biochar provides many benefits to agriculture by improving the whole complex of soil properties, including soil structure. However, the diverse range of biochar effects depends on its physicochemical properties, its application rates, soil initial properties etc. The impacts of biochar, mainly its reapplication to soils and its interaction with nitrogen in relation to water-stable aggregates (WSA) did not receive much attention to date. The aims of the study were: (1) to evaluate the effect of initial application (in spring 2014) and reapplication (in spring 2018) of different biochar rates (B0, B10 and B20 t ha−1) as well as application of biochar with N-fertilizer (40 to 240 kg N ha−1 depending on the requirement of the cultivated crop) on the content of WSA as one of the most important indicators of soil structure quality, (2) to assess the interrelationships between the contents of soil organic matter (SOM) and WSA. The study was conducted in 2017–2019 as part of the field experiment with biochar on Haplic Luvisol at the experimental station of SUA in Nitra, Slovakia. Results showed that initial application as well as reapplication of biochar improved soil structure. The most favorable changes in soil structure were found in N0B20B treatment (with biochar reapplication) at which a significantly higher content of water-stable macro-aggregates (WSAma) (+15%) as well as content of WSAma size fractions of 〉 5 mm, 5–3 mm, 3–2 mm and 2–1 mm (+72%, +65%, +57% and +64%, respectively) was observed compared to the control. An increase in SOM content, due to both, initial biochar application and its reapplication, significantly supported the stability of soil aggregates, while organic matter including humic substances composition did not.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 9
    Publication Date: 2021-02-26
    Description: In transmission electron microscope (TEM), both the amplitude and phase of electron beam change when electrons traverse a specimen. The amplitude is easily obtained by the square root of the intensity of a TEM image, while the phase affects defocused images. In order to obtain the phase map and verify the theoretical model of the interaction between electron beam and specimen, a lot of simulations have been performed by researchers. In this work, we have simulated defocus images of a SiC nanowire in TEM with the method of electron optics. Mean inner potential and charge distribution on the nanowire have been considered in the simulation. Besides, due to electron scattering coherence loss of the electron beam has been introduced. A dynamic process with Bayesian optimization was used in the simulation. With the infocus image as input and by adjusting fitting parameters the defocus image is determined with a reasonable charge distribution. The calculated defocus images are in a good agreement with the experimental ones. Here, we present a complete solution and verification method for solving nanoscale charge distribution in TEM.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 10
    facet.materialart.
    Unknown
    Oxford University Press
    Publication Date: 2021-02-01
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 11
    Publication Date: 2021-03-01
    Description: Analyses based on precipitation data may be limited by the quality of the data, the size of the available historical series and the efficiency of the adopted methodologies; these factors are especially limiting when conducting analyses at the daily scale. Thus, methodologies are sought to overcome these barriers. The objective of this work is to develop a hybrid model through the maximum overlap discrete wavelet transform (MODWT) to estimate daily rainfall in homogeneous regions of the Tocantins-Araguaia Hydrographic Region (TAHR) in the Amazon (Brazil). Data series from the Climate Prediction Center morphing (CMORPH) satellite products and rainfall data from the National Water Agency (ANA) were divided into seasonal periods (dry and rainy), which were adopted to train the model and for model forecasting. The results show that the hybrid model had a good performance when forecasting daily rainfall using both databases, indicated by the Nash–Sutcliffe efficiency coefficients (0.81–0.95), thus, the hybrid model is considered to be potentially useful for modelling daily rainfall.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 12
    Publication Date: 2021-03-01
    Description: In this study, the value of proxy data was explored for calibrating a conceptual hydrologic model for small ungauged basins, i.e. ungauged in terms of runoff. The study site was a 66 ha Austrian experimental catchment dominated by agricultural land use, the Hydrological Open Air Laboratory (HOAL). The three modules of a conceptual, lumped hydrologic model (snow, soil moisture accounting and runoff generation) were calibrated step-by-step using only proxy data, and no runoff observations. Using this stepwise approach, the relative runoff volume errors in the calibration and first and second validation periods were –0.04, 0.19 and 0.17, and the monthly Pearson correlation coefficients were 0.88, 0.71 and 0.64, respectively. By using proxy data, the simulation of state variables improved compared to model calibration in one step using only runoff data. Using snow and soil moisture information for model calibration, the runoff model performance was comparable to the scenario when the model was calibrated using only runoff data. While the runoff simulation performance using only proxy data did not considerably improve compared to a scenario when the model was calibrated on runoff data, the more accurately simulated state variables imply that the process consistency improved.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 13
    Publication Date: 2021-03-01
    Description: Large debris transported by flood affects scour features at bridge piers and increases the risks of structural failure. Geometric characteristics of the debris and the relative position of the pier with respect to the river bank are important parameters for the scour process. The interaction between the water flow and debris accumulation increases the shear stress, turbulence and consequently enhances the scour depth at the pier. This paper aims at analyzing such effects on scour evolution at bridge piers. To this end, two series of tests were carried out under clear water condition with different debris geometries and percentage blockage ratios. Experimental evidences showed that the pier position only influences scour evolution and equilibrium morphology for low water depths. Conversely, its effect becomes negligible for scour at bridge piers with debris accumulation and higher water depths. Useful practical relationships have been derived, with satisfactory prediction capability of the scour evolution for all the tested configurations.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 14
    Publication Date: 2021-03-01
    Description: The study aimed to determine the linkage between soil exchangeable potassium (K+) concentration and stream water K+ concentration during rainfall and snowmelt events in small catchments with different land use (Carpathian Foothills, Poland). The complementary geochemical and hydrochemical approach used in the study produced new information on the role of particular soil horizons and contributing areas such as hillslope or riparian areas in K+ delivery to stream channels during events. Horizons lying above the nearly impermeable fragipan (Btx) play the most important role in the process of K+ influx to streams during most event types except snowmelts with frozen soils, in all the studied catchments. In the woodland catchment, rapid flushing of K+ from the topsoil Ah horizon with higher hydraulic conductivity (Ksat) and higher exchangeable K+ concentrations than in the lying lower E horizon resulted in a clockwise hysteresis of K+ in stream water during most events. In agricultural catchments, changes in stream water K+ concentration during events were determined by distinct differences between soil exchangeable K+ concentrations on hillslopes and in riparian areas.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 15
    Publication Date: 2021-03-01
    Description: An open channel flume with a central 180-degree bend with a rigid bed is designed to obtain a better understanding of the complex flow pattern around a T-shaped spur dike located in a sharp bend. The 3-dimensional velocities are measured by using an acoustic Doppler velocimetry under clear-water conditions. This study’s primary objective is to compare variations of the mean flow pattern along a 180-degree bend with a variety of T-shaped spur dike lengths. In order to do so, parameters such as streamlines, the maximum velocity distribution, and the secondary flow strength under the influence of three T-shaped spur dike lengths will be analyzed and then compared with the case where no spur dikes are implemented. The results show that with the spur dike placed at the bend apex, the mean secondary flow strength at that range increases by approximately 2.5 times. In addition, a 67% increase in the length of the wing and web of the spur dike leads to a 27% growth in the mean secondary flow strength along the bend.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 16
    Publication Date: 2021-04-02
    Description: This is the first report on analyzing the chemical state of Li-ion battery electrodes at different states of charge by using a wavelength-dispersive spectrometer, which has a two-order improved energy resolution in the soft X-ray energy region compared with that of a conventional energy-dispersive X-ray analyzer. Electrodes containing LiMn1.5Ni0.5O4 were charged to prepare Li0.5Mn1.5Ni0.5O4 and λ-Mn0.75Ni0.25O2. The soft X-ray emission spectra obtained from those materials show that the O-K emission signal was drastically decreased throughout the charging process. This suggests that O-2p electron contributed to the electrochemical oxidation. The density of states and Bader charge evaluated from ab initio calculation support this result.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 17
    Publication Date: 2021-03-04
    Description: Operando observation using spin-polarized scanning electron microscopy (spin SEM) has been demonstrated by detecting changes in the magnetization in the writing head of a hard disk drive (HDD) during operation. A current-applying system developed for use in the sample stage of a spin SEM enables imaging of the magnetization changes in the writing head of an HDD while the writing head is activated. Focused ion beam (FIB) technology is used to fabricate electric contacts between the head terminals and the sample holder electrodes. Tungsten film is deposited by FIB technology on the insulator around the writing head to prevent electrostatic charge buildup in the insulators during SEM measurement. This system is well suited for studying the characteristics of writing heads in HDDs in an activated state.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 18
    facet.materialart.
    Unknown
    Oxford University Press
    Publication Date: 2021-08-01
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 19
    Publication Date: 2021-08-06
    Description: Phase diagram of Au–Si binary alloy system shows a large drop in melting temperature of about 1000K compared with that of Si at a composition of Au:Si = 81:19, where the melting temperature is about 636K. Mixing of Au and Si below the melting temperature was observed by transmission electron microscopy experiment, and it was found that the mixed region shows a diffraction pattern of a diffuse ring intensity indicating an amorphous structure of the mixed area. Si L-emission spectra, which reflect the energy state of bonding electrons of Si atom, of molten Au81Si19 alloy were measured for the first time to investigate the energy state of valence electrons of Si. The Si L-emission spectrum showed a characteristic loss of L1 peak, which is related to sp3 directional bonding in crystalline Si. The intensity profile is also different from that of molten Si reported. This suggests a characteristic atomic arrangement that exists in the molten state. The intensity profile also indicated a small density of state in the molten state at Fermi energy. The obtained spectrum was compared with the calculated density of state of possible crystal structures reported. The comparison suggested that Si atoms are surrounded by eight Au atoms in the molten state of Au81Si19 alloy. The formation of this local atomic arrangement can be an origin of a large drop of melting temperature at about Au:Si = 81:19.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 20
    Publication Date: 2021-01-22
    Description: The microstructure, chemical composition and mechanical strength of heterogeneous materials of mantis shrimp (Oratosquilla oratoria) saddle were studied. As the key component of the striking system, the saddle comprised two distinct layers including outer layer and inner layer. The outer layer contained blocky microtubules and exhibited compact appearance. The inner layer presented a typical periodic lamellar structure. Due to the change of the thickness of the mineralized outer layer, the organic multilamellar structure became the foundation and enhanced the connection strength (4.55 MPa) at the connect regions between the saddle and merus exoskeleton and membrane, respectively. In the process of fracture, the lamellar structure dispersed the stress effectively by the change of the crack deflection direction and the microfibrils ordered arrangement. The exploration of mantis shrimp saddle region is beneficial to understand the striking system and provided the possibility for the stable connection of heterogeneous materials in engineering fields. The microstructure, heterogeneous material connection characteristics and high mechanical strength of saddle provide bionic models for the preparation of fiber-reinforced resin composites and soft composites.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 21
    Publication Date: 2021-01-22
    Description: Correlative light and electron microscopy (CLEM) is an excellent approach for examining the cellular localization of biomolecules. Here, we developed a simple method for CLEM by combining pre-embedding immunohistochemistry with a novel fluorescent probe, namely Fluolid NS Orange, and an embedding resin called ʻDurcupan™ʼ. Specimens were embedded in Durcupan™ or LR White after immunolabeling and post-fixation using glutaraldehyde and osmium tetroxide. Next, ultrathin sections were prepared on a finder grid with navigation markers. The section of the specimen embedded in Durcupan™ was found to be more stable against electron beam irradiation than specimens embedded in LR White. A fluorescence light microscopy image and a transmission electron microscopy (TEM) image, at wide-field, and low magnification, were independently obtained with the same ultrathin section. Using the three corners between finder grid bars as landmarks, fluorescence light microscopy images were superimposed with wide-field, low-magnification TEM images to identify the region of interest, which was subsequently enlarged to ascertain cellular structures localized beneath fluorescent signals. However, the enlarged TEM images appeared blurred, and fluorescence signals had a hazy appearance. To resolve this, the enlarged TEM images were replaced by high-resolution TEM images focused directly on the region of interest, thereby facilitating the collection of high-resolution CLEM images. The simple sample processing method for CLEM using osmium-resistant Fluolid NS Orange and electron beam damage-resistant Durcupan™ allowed the determination of the precise localization of fluorescence signals at subcellular levels.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 22
    Publication Date: 2021-01-15
    Description: Degradation of the crystalline quality of transmission electron microscopy specimens in silicon prepared with different conditions has been examined using convergent-beam electron diffraction (CBED). The specimens are prepared using focused ion beam (FIB) with different accelerating voltages, Ar-ion milling and crushing method. Symmetry breaking of CBED patterns was quantitatively evaluated by symmetry breaking index S, which has been previously reported. The degradation and inhomogeneity of the FIB specimen were suppressed by decreasing the accelerating voltages of the FIB fabrication in the final process.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 23
    Publication Date: 2021-04-05
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 24
    Publication Date: 2021-01-22
    Description: Reversibly photoswitchable fluorescent proteins (RSFPs) are a class of fluorescent proteins whose fluorescence can be turned on and off by light irradiation. RSFPs have become essential tools for super-resolution (SR) imaging. Because most SR imaging techniques require high-power-density illumination, mitigating phototoxicity in cells due to intense light irradiation has been a challenge. Although we previously developed an RSFP named Kohinoor to achieve SR imaging with low phototoxicity, the photoproperties were insufficient to move a step further to explore the cellular dynamics by SR imaging. Here, we show an improved version of RSFP, Kohinoor2.0, which is suitable for SR imaging of cellular processes. Kohinoor2.0 shows a 2.6-fold higher fluorescence intensity, 2.5-fold faster chromophore maturation and 1.5-fold faster off-switching than Kohinoor. The analysis of the pH dependence of the visible absorption band revealed that Kohinoor2.0 and Kohinoor were in equilibria among multiple fluorescently bright and dark states, with the mutations introduced into Kohinoor2.0 bringing about a higher stabilization of the fluorescently bright states compared to Kohinoor. Using Kohinoor2.0 with our SR imaging technique, super-resolution polarization demodulation/on-state polarization angle narrowing, we conducted 4-h time-lapse SR imaging of an actin filament network in mammalian cells with a total acquisition time of 480 s without a noticeable indication of phototoxicity. Furthermore, we demonstrated the SR imaging of mitochondria dynamics at a time resolution of 0.5 s, in which the fusion and fission processes were clearly visualized. Thus, Kohinoor2.0 is shown to be an invaluable RSFP for the SR imaging of cellular dynamics.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 25
    Publication Date: 2021-08-13
    Description: The spatiotemporal organization of chromatin is regulated at different levels in the nucleus. Epigenetic modifications such as DNA methylation and histone modifications are involved in chromatin regulation and play fundamental roles in genome function. While the one-dimensional epigenomic landscape in many cell types has been revealed by chromatin immunoprecipitation and sequencing, the dynamic changes of chromatin modifications and their relevance to chromatin organization and genome function remain elusive. Live-cell probes to visualize chromatin and its modifications have become powerful tools to monitor dynamic chromatin regulation. Bulk chromatin can be visualized by both small fluorescent dyes and fluorescent proteins, and specific endogenous genomic loci have been detected by adapting genome-editing tools. To track chromatin modifications in living cells, various types of probes have been developed. Protein domains that bind weakly to specific modifications, such as chromodomains for histone methylation, can be repeated to create a tighter binding probe that can then be tagged with a fluorescent protein. It has also been demonstrated that antigen-binding fragments and single-chain variable fragments from modification-specific antibodies can serve as binding probes without disturbing cell division, development and differentiation. These modification-binding modules are used in modification sensors based on fluorescence/Förster resonance energy transfer to measure the intramolecular conformational changes triggered by modifications. Other probes can be created using a bivalent binding system, such as fluorescence complementation or luciferase chemiluminescence. Live-cell chromatin modification imaging using these probes will address dynamic chromatin regulation and will be useful for assaying and screening effective epigenome drugs in cells and organisms.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 26
    Publication Date: 2021-02-02
    Description: Alveolar bone repair after tooth extraction is essential after oral surgeries. Various grafting materials are used to promote the regeneration of lost alveolar bone. This study analysed the morphological features of the tissue regeneration process using deproteinized bovine bone mineral (DBBM). DBBM was used to densely fill the extraction sockets in beagle dogs. Following resin casting of the vasculature, stereomicroscopy and scanning electron microscopy were used to observe blood vessels and hard tissues in haematoxylin and eosin-stained sections on postoperative days 14, 30 and 90 in conjunction with vascular endothelial growth factor (VEGF) immunostaining to evaluate alveolar bone vascularization. On day 14 post-operation, the DBBM granules tightly filled the extraction sockets, maintained alveolar margin height and formed a scaffold for aiding angiogenesis and new bone formation. On day 30, new bone formation was observed around the DBBM granules. By day 90, bone tissue regeneration progressed in both groups but was more pronounced in the DBBM group. Alveolar margin height was maintained in the DBBM group throughout the study. Furthermore, VEGF expression in the DBBM group was detected around newly formed bone. We conclude that DBBM acts as a suitable scaffold for new bone generation, as well as angiogenesis around healing alveolar bone, and that it has the potential to play a key role in vascularization and bone formation.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 27
    Publication Date: 2021-02-16
    Description: This paper presents a quick and straightforward method to evaluate image distortion in scanning electron microscopy using a certified reference material (CRM) as a test specimen. The CRM has a square dot-array structure, whose dot-pitch has an accredited value. By calculating the distance between each dot of the CRM via image analysis, we can detect the distortion in the image as variations of dot interval. Furthermore, by considering the uncertainty of the certified value, it is possible to quantitatively evaluate the significance of the distortion in the image. This method enables us to easily estimate the uncertainty from image distortion, which can improve the reliability of measurement by scanning electron microscopy.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 28
    Publication Date: 2021-09-07
    Description: High resolution study of the giant viruses presents one of the latest challenges in cryo-electron microscopy of viruses. Too small for light microscopy, but too large for easy study at high resolution by electron microscopy, they range in size from ~0.2-2 μm, from high symmetry icosahedral viruses such as Paramecium burseria Chlorella virus 1 to asymmetric forms like Tupanvirus or Pithovirus. To attain high resolution, two strategies exist to study these large viruses by cryo-EM: firstly, increasing the acceleration voltage of the electron microscope to improve sample penetration and overcome the limitations imposed by electro-optical physics at lower voltages, and secondly the method of “block-based reconstruction” pioneered by Michael G. Rossmann and his collaborators, which resolves the latter limitation through an elegant leveraging of high symmetry, but cannot overcome sample penetration limitations. In addition, more recent advances in both computational capacity and image processing also yield assistance in studying the giant viruses. Especially, the inclusion of Ewald sphere correction can provide large improvements in attainable resolutions for 300 kV electron microscopes. Despite this, the study of giant viruses remains a significant challenge.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 29
    Publication Date: 2021-08-21
    Description: Accompanied with the clinical routine examination demand increase sharply, the efficiency and accuracy are the first priority. However, automatic classification and localization of cells in microscopic images in super depth of Field (SDoF) system remains great challenges. In this paper, we advance an object detection algorithm for cells in the SDoF micrograph based on Retinanet model. Compared with the current mainstream algorithm, the mean average precision (mAP) index is significantly improved. In the experiment of leucorrhea samples and fecal samples, mAP indexes are 83.1% and 88.1%, respectively, with an average increase of 10%. The object detection model proposed in this paper can be applied to feces and leucorrhea detection equipment, and significantly improve the detection efficiency and accuracy.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 30
    Publication Date: 2021-09-18
    Description: Amnion membrane studies related to miscarriage have been conducted in the field of obstetrics and gynecology. However, the distribution of stem cells within the amnion and the differences in the properties of each type of stem cells are still not well understood. We address this gap in knowledge in the present study where we morphologically classified the amnion membrane, and we clarified the distribution of stem cells here to identify functionally different amniotic membrane–derived stem cells. The amnion can be divided into a site that is continuous with the umbilical cord (region A), a site that adheres to the placenta (region B), and a site that is located opposite the placenta (region C). We found that human amnion epithelial stem cells (HAECs) that strongly express stem cell markers were abundant in area A. HAEC not only expressesed stem cell-specific surface markers TRA-1-60, Tra-1-81, SSEA4, SSEA3, but was also OCT-3/4 positive and had alkaline phosphatase activity. Human amniotic mesenchymal stem cells expressed KLF-A, OCTA, Oct3/4, c-MYC and Sox2 which is transcription factor. Especially, in regions A and B they have expressed CD73, and the higher expression of BCRP which is drug excretion transporter protein than the other parts. These data suggest that different types of stem cells may have existed in different area. The understanding the relation with characteristics of the stem cells in each area and function would allow for the efficient harvest of suitable HAE and HAM stem cells as using tool for regenerative medicine.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 31
    Publication Date: 2020-09-01
    Description: The paper describes a mathematical and physical modelling of flow of complex slurries in pipelines, i.e. a flow of slurries composed of solids covering a very broad range of particle sizes that overlaps more than one flow patterns – non-Newtonian, pseudohomogeneous, heterogeneous and fully-stratified. A typical examples are residual products (“tailings”) from mining industry with normal average particle sizes of 20 to 100 μm or more. Experimental results of flows of complex slurries composing of non-Newtonian carrier fluid and three fractions of glass particles in 50 mm pipe are presented. Depending on the particle size, particles show different flow patterns and therefore considerable differences in pressure drops. Fine particles tend behave as a homogeneous matter, while coarser particles exhibit heterogeneous behaviour and even coarser particles form a sliding bed. A mathematical 3-component predictive model for turbulent flow of complex slurries is presented based on well-established semi-empirical formulae developed originally for flows with Newtonian carrier. The predicted values of pressure drops show very reasonable agreement with experimental results and indicate suitability of the model for engineering practice.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 32
    Publication Date: 2020-09-01
    Description: Rock dwelling organisms (lithobionts) such as cyanobacteria (prokaryotes) and chlorolichens (eukaryotes) abound in the Negev Desert, where they cover almost all calcareous bedrocks and rock particles (cobbles, boulders). In a small limestone watershed in the Negev Highlands, cyanobacteria inhabit the south-facing (SF) bedrocks, epilithic lichens (accompanied by endolithic lichens) inhabit the north-facing (NF) bedrocks, while endolithic lichens cover most of the cobbles and boulders in both aspects. In order to study their contribution to runoff water, a pair of runoff plots was established on habitats with cyanobacteria, endolithic lichens, and epilithic lichens. Rain and runoff were collected during the hydrological year 2006/07, and the chemical composition (Ca, Mg, Na, K, Cl, SO4, HCO3, Si) of the rain and runoff water was analyzed. Several patterns were observed: (a) as indicated by Si, more dust accumulated on the bedrocks; (b) all substrates exhibited high amounts of Ca, and HCO3; (c) while SF-bedrocks showed enrichment in K, both bedrocks (and especially the NF bedrocks), as well as the NF boulders showed an enrichment in Mg. While the enrichment in Ca and HCO3 can be explained by the contribution of the limestone parent material, the enrichment in K and Mg can be explained by the contribution of the living lithobionts, with K being mainly contributed by the cyanobacteria and Mg mainly by the epilithic lichens. Ion enrichment may therefore be aspect-dependent, reflecting the lithobiont distribution within the drainage basin, partially explaining the enrichment in K and Mg previously recorded in runoff water from the Negev.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 33
    Publication Date: 2020-09-01
    Description: Sand burial is a ubiquitous disturbance that influences the ecological and hydrological properties of moss crusts in many sandy desert areas. There is little available information regarding the effect of sand burial on the water repellency (WR) of moss crusts in desert areas. Therefore, this study evaluated the effects of sand burial (sand depths of 0 (control), 0.5, 1, 2, 4 and 10 mm) followed by three simulated precipitation regimes (through applying 4 and 6 mm, 2 and 3 mm, and 1 and 1.5 mm of distilled water at 8-day intervals in spring and autumn, respectively) on the WR of a widespread moss crust dominated by Bryum argenteum Hedw. in a revegetated area of the Tengger Desert, China. The results showed moss crust WR remained subcritical during the whole experiment, and that it considerably decreased immediately after sand burial, even though the values of WR were significantly higher in autumn than those in spring under the same treatment (p 〈 0.05). Furthermore, the depth threshold (TD) values for sand burials that reduced WR to zero were 1 and 2 mm in spring and autumn, respectively. After a recovery period of nearly one-season (72 days), the WR of the moss crust significantly increased (p 〈 0.05). In addition, sand burial had two separate effects on moss crust WR. Specifically, shallower sand burial (burial depth less than 0.5 mm) increased moss crust WR, whereas deeper sand burial (burial depth exceeds 0.5 mm) decreased it. The TD values also significantly increased to 2 and 4 mm in spring and autumn, respectively. These findings about the effects of sand burial on moss crust WR provide additional information that can be used to better understand the influence of sand burial on moss crust colonization and maintenance in arid sand-burial-stressed ecosystems, and to help explain why there are some contrasting viewpoints on biocrust WR.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 34
    Publication Date: 2020-09-01
    Description: The objectives of the study were to: (1) assess the strength of associations of direct CO2 and N2O emissions with the seasonal variations in the relevant soil properties under both tillage systems; 2) evaluate how CT and RT affect magnitudes of seasonal CO2 and N2O fluxes from soil. Field studies were carried out on plots for conventional tillage (up to 0.22–0.25 m) and reduced tillage (up to 0.10–0.12 m) during the growing season and post-harvest period of red clover. The results showed that daily CO2 emissions significantly correlated only with soil temperature during the growing season under conventional and reduced tillage. Soil temperature demonstrated its highest influence on daily N2O emissions only at the beginning of the growing season in both tillage systems. There were no significant inter-system differences in daily CO2 and N2O emissions from soil during the entire period of observations. Over the duration of post-harvest period, water-filled pore space was a better predictor of daily CO2 emissions from soils under CT and RT. The conventional and reduced tillage did not cause significant differences in cumulative N2O and CO2 fluxes from soil.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 35
    Publication Date: 2020-09-01
    Description: Climate change and human activity are two linked factors that alter the spatiotemporal distribution of the available water. Assessing the relative contribution of the two factors on runoff changes can help the planners and managers to better formulate strategies and policies regarding regional water resources. In this work, using two typical sub-basins of the Yellow River as the study area, we first detected the trend and the breakpoint in the annual streamflow data with the Pettitt test during the period 1964–2011. Next, a Budyko-based climate elasticity model and a monthly hydrological model were employed as an integrated method to distinguish the relative contributions of climate change and human activities to the long-term changes in runoff. The results showed that a significant decline in the annual runoff occurred in the two sub-basins during the study period, and the abrupt change point in the annual runoff at the two sub-basins both occurred in 1997. The conceptual hydrological model performed well in reproducing monthly runoff time series at the two sub-basins. The Nash-Sutcliffe efficiency (NSE) between observed and simulated runoff during the validation period exceeds 0.83 for the two sub-basins. Climate elasticity method and hydrological model give consistent attribution results: human activities are the major drivers responsible for the decreased annual runoff in the Ten Great Gullies Basin. The relative contributions of climate change and human activities to the changes in the annual runoff were 22–32% and 68–78%, respectively.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 36
    Publication Date: 2020-09-01
    Description: The two-dimensional particle image velocimetry (PIV) data are inevitably contaminated by noise due to various imperfections in instrumentation or algorithm, based on which the well-established vortex identification methods often yield noise or incomplete vortex structure with a jagged boundary. To make up this deficiency, a novel method was proposed in this paper and the efficiency of the new method was demonstrated by its applications in extracting the two-dimensional spanwise vortex structures from 2D PIV data in open-channel flows. The new method takes up a single vortex structure by combining model matching and vorticity filtering, and successfully locates the vortex core and draws a streamlined vortex boundary. The new method shows promise as being more effective than commonly used schemes in open-channel flow applications.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 37
    Publication Date: 2020-09-01
    Description: Lake Śniardwy is the largest among more than 7000 Polish lakes. So far, it has not been a subject of detailed investigations concerning long-term changes in water temperature or ice regime. A considerable change in thermal and ice conditions has been observed in the period 1972–2019. Mean annual water temperature increased by 0.44°C dec−1 on average, and was higher than an increase in air temperature (0.33°C dec−1). In the monthly cycle, the most dynamic changes occurred in April (0.77°C dec−1). In the case of ice cover, it appeared increasingly later (5.3 days dec−1), and disappeared earlier (3.0 days dec−1). The thickness of ice cover also decreased (2.4 cm dec−1). Statistical analysis by means of a Pettitt test showed that the critical moment for the transformations of the thermal and ice regime was the end of the 1980’s. In addition to the obvious relations with air temperature for both characteristics, it was evidenced that the occurrence of ice cover depended on wind speed and snow cover. The recorded changes in the case of Lake Śniardwy are considered unfavourable, and their consequences will affect the course of physical, chemical, and biological processes in the largest lake in Poland.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 38
    Publication Date: 2020-09-01
    Description: Dams have an important role in the industrial development of countries. Irrespective of the reason for dam break, the flood can cause devastating disasters with loss of life and property especially in densely populated areas. In this study, the effects of the vegetation on the flood wave propagation in case of dam break were investigated experimentally by using the distorted physical model of Ürkmez Dam. The horizontal and vertical scales of the distorted physical model are 1/150 and 1/30, respectively. The dam break scenarios were achieved by means of a gate of rectangular and triangular shape. The results obtained from experiments performed with vegetation were compared and interpreted with those obtained from experiments at which the vegetation configuration was absent. The analysis of the experimental data showed that the presence of vegetation causes a significant decrease in water depths as the flood wave propagates to the downstream and greatly reduces its impact on the settlements. It is also revealed that dam break shape plays an important role in temporal variation of flood wave.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 39
    Publication Date: 2020-09-01
    Description: In this paper, the risk zone mapping of declining lowland forests belonging to „Morović“, management unit „Varadin-Županja“ (northern Serbia) is performed using geostatistics analysis. Based on the monitoring of groundwater level, the Kriging method has been performed for the spatial distribution of groundwater level for a multiyear period (2010–2013) – reference level and characteristic levels for the wettest and the driest year during the analyzed period. Risk assessment was determined by the variance of characteristics compared to reference levels. Then, multi-criteria decision analysis methods (AHP, PROMETHEE II) were applied to define the rank of each department (smaller forest management units) located in the research area. These analyses are very important because they enable to locate of the area with a high risk of forest decline and to rank departments using criteria: deviation from water level recorded during dry periods, species demand for water, conservation status and purpose of the unit (seed stands or technical wood). The proposed methodology is usable for the determination of the primary localities for the application of management measures conducting on the level of lower planned units (departments) and thus lead to the successful planning and more efficient forest management. Obtained results at the researched area showed that a negative influence on the watering regime has groundwater level decreasing compared to the reference level because it directly affects available water for the plants. Based on multicriteria analysis methods, it was deduced that the most endangered parts are located at the edge, while this risk is much lower in the central part of the management unit. A combination of applied methods (geostatistics and multicriteria analysis) is of great importance for forestry management.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 40
    Publication Date: 2020-09-01
    Description: A three-dimensional numerical model was applied to simulate submerged spatial hydraulic jumps (SSHJ) downstream of a symmetric vent that discharges into a wider channel. Simulations were carried out for different aspect ratios of the vent, expansion ratios of vent width to downstream channel width, tailwater depth, and inlet Froude number. Depending on these factors, simulations indicated the formation of steady asymmetric SSHJ, oscillatory asymmetric SSHJ, and steady symmetric SSHJ, consistent with results of previous experimental studies. The model reproduced observed depth downstream of vent, jump length, and velocity profiles along channel centerline for steady symmetric SSHJ. For oscillatory asymmetric SSHJ, simulated oscillation frequencies had Strouhal numbers that varied with expansion ratio and ranged between 0.003 and 0.015. With piers downstream of the vent, oscillatory SSHJ continued to exhibit jet deflections when pier length was relatively short ( ≲ 0.2 of jump length) but became steady asymmetric for longer piers.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 41
    Publication Date: 2020-06-01
    Description: The paper introduces the Special Section on the Hydrology of the Carpathians in this issue. It is the result of an initiative of the Department of Land and Water Resources Management of the Slovak University of Technology in Bratislava, the Institute of Hydraulic Engineering and Water Resources Management of the TU Vienna and the Institute of Geomatics and Civil Engineering of the University of Sopron to allow young hydrologists in the Carpathian Basin (and from outside) to present their research and re-network on the emerging topics of the hydrology of the Carpathians at the HydroCarpath Conferences since 2012.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 42
    Publication Date: 2020-06-01
    Description: Measuring evaporation and transpiration at the field scale is complicated due to the heterogeneity of the environment, with point measurements requiring upscaling and field measurements such as eddy covariance measuring only the evapotranspiration. During the summer of 2014 an eddy covariance device was used to measure the evapotranspiration of a growing maize field at the HOAL catchment. The stable isotope technique and a Lagrangian near field theory (LNF) were then utilized to partition the evapotranspiration into evaporation and transpiration, using the concentration and isotopic ratio of water vapour within the canopy. The stable isotope estimates of the daily averages of the fraction of evapotranspiration (Ft) ranged from 43.0–88.5%, with an average value of 67.5%, while with the LNF method, Ft was found to range from 52.3–91.5% with an average value of 73.5%. Two different parameterizations for the turbulent statistics were used, with both giving similar R2 values, 0.65 and 0.63 for the Raupach and Leuning parameterizations, with the Raupach version performing slightly better. The stable isotope method demonstrated itself to be a more robust method, returning larger amounts of useable data, however this is limited by the requirement of much more additional data.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 43
    Publication Date: 2020-06-01
    Description: The paper presents validation of a mathematical model describing the friction factor by comparing the predicted and measured results in a broad range of solid concentrations and mean particle diameters. Three different types of solids, surrounded by water as a carrier liquid, namely Canasphere, PVC, and Sand were used with solids density from 1045 to 2650 kg/m3, and in the range of solid concentrations by volume from 0.10 to 0.45. All solid particles were narrowly sized with mean particle diameters between 1.5 and 3.4 mm. It is presented that the model predicts the friction factor fairly well. The paper demonstrates that solid particle diameter plays a crucial role for the friction factor in a vertical slurry flow with coarse solid particles. The mathematical model is discussed in reference to damping of turbulence in such flows. As the friction factor is below the friction for water it is concluded that it is possible that the effect of damping of turbulence is included in the KB function, which depends on the Reynolds number.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 44
    Publication Date: 2020-06-01
    Description: Providing information on the impacts of climate change on hydrological processes is becoming ever more critical. Modelling and evaluating the expected changes of the water resources over different spatial and time scales can be useful in several fields, e.g. agriculture, forestry and water management. Previously a Budyko-type spatially distributed long-term climate-runoff model was developed for Hungary. This research includes the validation of the model using historical precipitation and streamflow measurements for three nested sub-catchments of the Zala River Basin (Hungary), an essential runoff contributing region to Lake Balaton (the largest shallow lake in Central Europe). The differences between the calculated (from water balance) and the estimated (by the model) mean annual evapotranspiration varied between 0.4% and 3.6% in the validation periods in the sub-catchments examined. Predictions of the main components of the water balance (evapotranspiration and runoff) for the Zala Basin are also presented in this study using precipitation and temperature results of 12 regional climate model simulations (A1B scenario) as input data. According to the projections, the mean annual temperature will be higher from period to period (2011–2040, 2041–2070, 2071–2100), while the change of the annual precipitation sum is not significant. The mean annual evapotranspiration rate is expected to increase slightly during the 21st century, while for runoff a substantial decrease can be anticipated which may exceed 40% by 2071–2100 relative to the reference period (1981–2010). As a result of this predicted reduction, the runoff from the Zala Basin may not be enough to balance the increased evaporation rate of Lake Balaton, transforming it into a closed lake without outflow.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 45
    Publication Date: 2020-06-01
    Description: In agricultural land use, organic residues such as compost, digestate, and sewage sludge are discussed as costeffective soil conditioner that may improve the water holding capacity and crop available soil moisture. The objective of this study is to determine the effect of application of digestates with different compositions in maize, sugar beet and winter wheat, compost of shrub debris and sewage sludge on shrinkage behaviour and contact angle of till-derived loamy topsoil of a Haplic Luvisol under agricultural use. Novelty is the simultaneous determination of contact angle and shrinkage of soils amended with digestates composed of different composition in maize, sugar beet and winter wheat, compost of shrub debris and sewage sludge. The results suggest that the application of organic residues impacts the air capacity, while the contact angles remained in the subcritical range between 〉 0° and 〈 90°. The relationship between CA values and moisture ratios, ϑ, during proportional shrinkage was positive and linear (r2 of 0.98) and negative during residual- and zero-shrinkage (r2 of 0.93).
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 46
    Publication Date: 2020-06-01
    Description: The event runoff coefficient (Rc) and the recession coefficient (tc) are of theoretical importance for understanding catchment response and of practical importance in hydrological design. We analyse 57 event periods in the period 2013 to 2015 in the 66 ha Austrian Hydrological Open Air Laboratory (HOAL), where the seven subcatchments are stratified by runoff generation types into wetlands, tile drainage and natural drainage. Three machine learning algorithms (Random forest (RF), Gradient Boost Decision Tree (GBDT) and Support vector machine (SVM)) are used to estimate Rc and tc from 22 event based explanatory variables representing precipitation, soil moisture, groundwater level and season. The model performance of the SVM algorithm in estimating Rc and tc is generally higher than that of the other two methods, measured by the coefficient of determination R2, and the performance for Rc is higher than that for tc. The relative importance of the explanatory variables for the predictions, assessed by a heatmap, suggests that Rc of the tile drainage systems is more strongly controlled by the weather conditions than by the catchment state, while the opposite is true for natural drainage systems. Overall, model performance strongly depends on the runoff generation type.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 47
    Publication Date: 2020-06-01
    Description: We analyse water balance, hydrological response, runoff and snow cover characteristics in the Jalovecký Creek catchment (area 22 km2, mean elevation 1500 m a.s.l.), Slovakia, in hydrological years 1989–2018 to search for changes in hydrological cycle of a mountain catchment representing hydrology of the highest part of the Western Carpathians. Daily air temperature data from two meteorological stations located in the studied mountain range (the Tatra Mountains) at higher elevations show that the study period is 0.1°C to 2.4°C warmer than the climatic standard period 1951–1980. Precipitation and snow depth data from the same stations do not allow to conclude if the study period is wetter/drier or has a decreasing snow cover. Clear trends or abrupt changes in the analysed multivariate hydrometric data time series are not obvious and the oscillations found in catchment runoff are not coherent to those found in catchment precipitation and air temperature. Several time series (flashiness index, number of flow reversals, annual and seasonal discharge maxima, runoff coefficients) indicate that hydrological cycle is more dynamic in the last years of the study period and more precipitation runs off since 2014. The snow cover characteristics and climatic conditions during the snow accumulation and melting period do not indicate pronounced changes (except the number of days with snowfall at the Kasprowy Wierch station since 2011). However, some data series (e.g. flow characteristics in March and June, annual versus summer runoff coefficients since 2014) suggest the changes in the cold period of the year.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 48
    Publication Date: 2020-06-01
    Description: The role of stony soils in runoff response of mountain catchments is rarely studied. We have compared simulated response of stony soils with measured catchment runoff for events caused by rains of small and high intensities in the mountain catchment of the Jalovecký Creek, Slovakia. The soil water response was simulated for three sites with stoniness 10–65% using the Hydrus-2D single porosity model. Soil hydraulic parameters employed in the modelling, i. e. the saturated hydraulic conductivity and parameters of the soil water retention curves, were obtained by two approaches, namely by the Representative Elementary Volume approach (REVa) and by the inverse modelling with Hydrus-1D model (IMa). The soil water outflow hydrographs simulated by Hydrus-2D were compared to catchment runoff hydrographs by analysing their skewness and peak times. Measured catchment runoff hydrographs were similar to simulated soil water outflow hydrographs for about a half of rainfall events. Interestingly, most of them were caused by rainfalls with small intensity (below 2.5 mm/10 min). The REV approach to derive soil hydraulic parameters for soil water outflow modelling provided more realistic shapes of soil water outflow hydrographs and peak times than the IMa approach.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 49
    Publication Date: 2020-06-01
    Description: The Loess Plateau is the main source of water in Yellow River, China. After 1980s, the Yellow river water presented a significant reduction, what caused the decrease of the Yellow river discharge had been debated in academic circles. We proceeded with runoff generation mechanisms to explain this phenomenon. We built saturation excess runoff and infiltration excess runoff generation mechanisms for rainfall–runoff simulation in Jingle sub-basin of Fen River basin on the Loess Plateau, to reveal the influence of land use change on flood processes and studied the changes of model parameters under different underlying conditions. The results showed that the runoff generation mechanism was mainly infiltration-excess overland flow, but the flood events of saturation-excess overland flow had an increasing trend because of land use cover change (the increase of forestland and grassland areas and the reduction of cultivated land). Some of the model parameters had physical significances,such as water storage capacity (WM), infiltration capacity (f), evapotranspiration (CKE), soil permeability coefficient (k) and index of storage capacity distribution curve (n) showed increasing trends, and index of infiltration capacity distribution curve (m) showed a decreasing trend. The above results proved the changes of runoff generation mechanism from the perspective of model parameters in Jingle sub-basin, which can provide a new perspective for understanding the discharge reduction in the Yellow River basin.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 50
    Publication Date: 2020-06-01
    Description: δ18O in precipitation at station Liptovský Mikuláš (about 8.5 km south from the outlet of the Jalovecký Creek catchment) remains constantly higher since 2014 that might be related to greater evaporation in the region of origin of the air masses bringing precipitation to the studied part of central Europe. Increased δ18O values are reflected also in the Jalovecký Creek catchment runoff. Seasonality of δ18O in the Jalovecký Creek became less pronounced since 2014. The most significant trends found in annual hydrological data series from the catchment in the study period 1989–2018 have the correlation coefficients 0.4 to 0.7. These trends are found in the number of flow reversals (change from increasing to decreasing discharge and vice versa), June low flow, number of simple runoff events in summer months (June to September) and the flashiness index. The attribution analysis suggests that drivers responsible for the changes in these data series include the number of periods with precipitation six and more days long, total precipitation amount in February to June, number of days with precipitation in June to September and total precipitation in May on days with daily totals 10 mm and more, respectively. The coefficients of determination show that linear regressions between the drivers and supposedly changed data series explain only about 31% to 36% of the variability. Most of the change points detected in the time series by the Wild Binary Segmentation method occur in the second and third decades of the study period. Both hydrometric and isotopic data indicate that hydrological cycle in the catchment after 2014 became different than before.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 51
    Publication Date: 2020-06-01
    Description: The main objective of the paper was to propose and evaluate the performance of a regional approach to estimate CN values and to test the impact of different initial abstraction ratios. The curve number (CN) was analyzed for five Slovak and five Polish catchments situated in the Carpathian Mountains. The L-moment based method of Hosking and Wallis and the ANOVA test were combined to delineate the area in two homogenous regions of catchments with similar CN values. The optimization condition enabled the choice of the initial abstraction ratio, which provided the smallest discrepancy between the tabulated and estimated CNs and the antecedent runoff conditions. The homogeneity in the CN within the regions of four Slovak and four Polish catchments was revealed. Finally, the regional CN was proposed to be at the 50% quantile of the regional theoretical distribution function estimated from all the CNs in the region.The approach is applied in a group of Slovak and Polish catchments with physiographic conditions representative for the Carpathian region. The main benefit of introducing a common regional CN is the opportunity to apply this procedure in catchments of similar soil-physiographic characteristics and to verify the existing tabulated CN. The paper could give rise to an alternative way of estimating the CN values in forested catchments and catchments with a lack of data or without observations.
    Electronic ISSN: 0042-790X
    Topics: Architecture, Civil Engineering, Surveying , Geosciences , Natural Sciences in General
    Published by De Gruyter
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 52
    Publication Date: 2020-03-02
    Description: The theoretical conditions for small-angle inelastic scattering where the incident electron can effectively be treated as a particle moving in a uniform potential is examined. The motivation for this work is the recent development of a multislice method that combines plasmon energy losses with elastic scattering using Monte Carlo methods. Since plasmon excitation is delocalized, it was assumed that the Bloch wave nature of the incident electron in the crystal does not affect the scattering cross-section. It is shown here that for a delocalized excitation the mixed dynamic form factor term of the scattering cross-section is zero and the scattered intensities follow a Poisson distribution. These features are characteristic of particle-like scattering and validate the use of Monte Carlo methods to model plasmon losses in multislice simulations.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 53
    Publication Date: 2020-06-22
    Description: This review examines methods of magnetic flux density measurements from the narrow grain boundary (GB) regions, the thickness of which is of the order of nanometers, produced in Nd–Fe–B-based sintered magnets. Despite of the complex crystallographic microstructure and the significant stray magnetic field of the sintered magnet, recent progress in electron holography allowed for the determination of the intrinsic magnetic flux density due to the GB which is embedded in the polycrystalline thin-foil. The methods appear to be useful as well for intensive studies about interface magnetism in a variety of systems.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 54
    Publication Date: 2020-05-05
    Description: Some species of lactic acid bacteria used for the production of natural cheese produce exopolysaccharides (EPS). Electron microscopy is useful for analyzing the microstructure of EPS produced by lactic acid bacteria. However, pretreatments used to observe the microstructure of EPS by electron microscopy, such as dehydration and resin embedding, can result in EPS flowing out easily from the cell. Therefore, in this study, the Tokuyasu method was conducted on cryosection to reduce EPS outflow. Two types of observation method, namely, using lectin and ruthenium red, were conducted in an attempt to observe EPS produced by Lactobacillus helveticus SBT2171. Observation using the lectin method confirmed that colloidal gold particles conjugated with a lectin recognizing β-galactoside were present in the capsule. Structures that appeared to be β-galactoside-containing slime polysaccharides that were released from the cell wall were also observed. Observation using ruthenium red showed that capsular polysaccharides (CPS) in the capsule were present as a net-like structure. Colloidal gold conjugation with an anti-β-lactoglobulin antibody, in addition to ruthenium red staining, allowed the identification of slime polysaccharides released from the cell wall in the milk protein network derived from the culture medium. Based on these results, the Tokuyasu method was considered to be a useful pretreatment method to clarify and observe the presence of EPS. In particular, both CPS in the capsule and slime exopolysaccharides released from the cell wall were visualized.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 55
    Publication Date: 2020-03-02
    Description: Transmission electron microscopy (TEM) and scanning transmission electron microscopy (STEM) enable the visualization of three-dimensional (3D) microstructures ranging from atomic to micrometer scales using 3D reconstruction techniques based on computed tomography algorithms. This 3D microscopy method is called electron tomography (ET) and has been utilized in the fields of materials science and engineering for more than two decades. Although atomic resolution is one of the current topics in ET research, the development and deployment of intermediate-resolution (non-atomic-resolution) ET imaging methods have garnered considerable attention from researchers. This research trend is probably not irrelevant due to the fact that the spatial resolution and functionality of 3D imaging methods of scanning electron microscopy (SEM) and X-ray microscopy have come to overlap with those of ET. In other words, there may be multiple ways to carry out 3D visualization using different microscopy methods for nanometer-scale objects in materials. From the above standpoint, this review paper aims to (i) describe the current status and issues of intermediate-resolution ET with regard to enhancing the effectiveness of TEM/STEM imaging and (ii) discuss promising applications of state-of-the-art intermediate-resolution ET for materials research with a particular focus on diffraction contrast ET for crystalline microstructures (superlattice domains and dislocations) including a demonstration of in situ dislocation tomography.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 56
    Publication Date: 2020-03-02
    Description: Image contrast between carbon nanotubes (CNTs) and polytetrafluoroethylene (PTFE) in a CNT/PTFE composite film, which is difficult to obtain by conventional backscattered electron (BSE) imaging, was optimized to better elucidate the distribution of CNT in the film. Ultra-low landing energy condition (0.3 keV in this study) was used to prevent specimen damage due to electron beam irradiation. Signal acceptance maps, which represent the distributions of energy and take-off angle, were calculated to evaluate the features of the signal detection system used in this study. SEM images of this composite film were taken under several sets of conditions and analyzed using these acceptance maps. CNT and PTFE in the composite film can be clearly distinguished with material and topographic contrasts using the BSE signal under optimized energy and take-off angle ranges, even at ultra-low landing energy conditions.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 57
    Publication Date: 2020-06-08
    Description: We have developed a new certified reference material (CRM) for image sharpness evaluation and magnification calibration for scanning electron microscopy (SEM). Designed to be suitable for the image sharpness evaluation by the derivative method, the CRM has nanoscale tungsten dot-array structure fabricated on silicon substrate, which gives steep contrast transition from the dot to the substrate in SEM image. The pitch of the dot-array was SI-traceably measured as a specified value with relative expanded uncertainty ($k=2$) of ~1.3%, which can be utilized for the magnification calibration of SEM. Since specimens, as one of the image formation parameters, easily affect image sharpness value, our CRM, as a ‘pinned specimen’, will play an important role to achieve robust and stable image sharpness measurement system.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 58
    Publication Date: 2020-06-11
    Description: Here, we describe a method for tracking intracellular processing of small interfering RNA (siRNA) containing complexes using automated microscopy controls and image acquisition to minimize user effort and time. This technique uses fluorescence colocalization to monitor dual-labeled fluorescent siRNAs delivered by silica nanoparticles in different intracellular locations, including the early/late endosomes, fast/slow recycling endosomes, lysosomes and the endoplasmic reticulum. Combining the temporal association of siRNAs with each intracellular location, we reconstructed the intracellular pathways used in siRNA processing, and demonstrate how these pathways vary based on the chemical composition of the delivery vehicle.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 59
    Publication Date: 2020-05-26
    Description: A scanning electron microscope transition edge sensor has been developed to analyze the minor or trace constituents contained in a bulk sample and small particles on the sample under a low accelerating voltage (typically
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 60
    Publication Date: 2020-01-28
    Description: The shape and orientation of second-phase precipitates in a Eu2+-doped equimolar KCl:KBr solid solution are reported in this paper as they were unveiled by epifluorescence microscopy. To make this, microscopy images of different optical cross sections of some precipitate fields and, also, of some representative precipitates in these fields, were recorded by using the Eu2+ ion itself as a fluorochrome. From these images, the corresponding precipitate fields and individual precipitates were electronically reconstructed into the host lattice space. Previously, the KCl:KBr:Eu2+ system was characterized by absorption and fluorescence optical spectrophotometry, to tailor properly the fluorescence mirror unit, as well as by powder and single-plate X-ray diffraction, to correlate the host lattice orientation with those of the observed precipitates. These are shaped as plates, with broad faces parallel to host lattice {100}, {110} or {120}planes (the {100}, {110} and {120} precipitates, respectively), and as rods, aligned with a host lattice ˂100〉 direction (the ˂100〉 precipitates). The {100}, {110}, {120}-precipitate broad faces are in the shapes of 72.6° rhomboids, rectangles and 59.5° rhomboids, with a side lying along host lattice , and directions, respectively, and with another side lying along a direction. A typical precipitate field and the spatial reconstructions of typical {100}, {110}, {120} and ˂100〉 precipitates, as well as their corresponding electronic 3D-geometrical models, are described in detail. It is discussed that four different europium precipitation states are responsible for the precipitation and that the precipitate lattices are spatially coherent with the host lattice.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 61
    Publication Date: 2020-01-15
    Description: In the present study, a free-standing object-sampling technique for microelectromechanical systems (MEMS) is developed to measure their sidewall surface roughnesses by atomic force microscopy (AFM). For this purpose, a conventional focused ion beam (FIB) sampling technique widely used for cross-sectional transmission electron microscope specimen preparation was applied. The sub-nm-order roughness parameters were quantitatively measured for sidewalls of Si-bridge test samples. The roughness parameters were compared before and after H2 annealing treatment, which induced smoothing of the surface by migration of the Si atoms. The reduction in the surface roughness by a factor of approximately one-third with 60-s H2 annealing was quantitatively evaluated by AFM. The present study confirms that the developed FIB–AFM technique is one potential approach for quantitatively evaluating the surface-roughness parameters on the oblique faces of free-standing objects in MEMS devices.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 62
    Publication Date: 2020-02-01
    Description: This study aimed to develop and evaluate an improved median filter (IMF) with an adaptive mask size for light microscope (LM) images. We acquired images of the mouse first molar using a LM at 100× magnification. The images obtained using our proposed IMF were compared with those from a conventional median filter. Several parameters such as the contrast-to-noise ratio, coefficient of variation, no-reference assessments and peak signal-to-noise ratio were employed to evaluate the image quality quantitatively. The results demonstrated that the proposed IMF could effectively de-noise the LM images and preserve the image details, achieving a better performance than the conventional median filter.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 63
    Publication Date: 2020-03-13
    Description: Various protein-labeling methods based on the specific interactions between genetically encoded tags and synthetic probes have been proposed to complement fluorescent protein-based labeling. In particular, labeling methods based on enzyme reactions have been intensively developed by taking advantage of the highly specific interactions between enzymes and their substrates. In this approach, the peptides or proteins are genetically attached to the target proteins as a tag, and the various labels are then incorporated into the tags by enzyme reactions with the substrates carrying those labels. On the other hand, we have been developing an enzyme-based protein-labeling system distinct from the existing ones. In our system, the substrate protein is attached to the target proteins as a tag, and the labels are incorporated into the tag by post-translational modification with an enzyme carrying those labels followed by tight complexation between the enzyme and the substrate protein. In this review, I summarize the enzyme-based protein-labeling systems with a focus on several typical methods and then describe our labeling system based on tight complexation between the enzyme and the substrate protein.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 64
    facet.materialart.
    Unknown
    Oxford University Press
    Publication Date: 2020-05-21
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 65
    Publication Date: 2020-08-11
    Description: Mini-abstract: Application of a three-dimensional culture system with air exposure facilitates the formation of large cell spheres possessing cribriform glands and producing mucin in the collagen gel. Transmission electron microscopy revealed the formation of microvilli and junctional complexes at the apical side of the cell. This study aimed to reproduce the characteristics of original adenocarcinoma tumors in vitro. The pancreatic cell line, SUIT-58, derived from a moderately differentiated adenocarcinoma of metastatic pancreatic cancer was used. The cells have a sheet structure in conventional cell culture without forming glands or exhibiting mucin production in the lumen. First, the necessity of scaffolds to create an adenocarcinoma-like microenvironment for SUIT-58 pancreatic cancer cells was assessed. Compared with conventional culture plates, the use of type I collagen as a scaffold played an important role in the formation of densely congested microvilli, as observed through scanning electron microscopy. As gland formation is one of the features of adenocarcinoma, we also assessed gland formation. Use of a recently developed three-dimensional culture system with air exposure resulted in the formation of large cell spheres possessing cribriform glands, which released mucin into the lumen. Transmission electron microscopy also revealed the formation of microvilli in the lumen of the glands and junctional complex at the intercellular part, which were similar to those observed in xenografts. These findings indicate that an in vitro three-dimensional culture system with air exposure reflects the intrinsic features of the original tumor, suggesting that this culture system could be useful for preliminary research of certain cancers.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 66
    Publication Date: 2020-08-25
    Description: We describe small-angle electron diffraction (SmAED) and Lorentz microscopy using a conventional transmission electron microscope. In SmAED, electron diffraction patterns with a wide-angular range on the order of 1 × 10−2 rad to 1 × 10−7 rad can be obtained. It is demonstrated that magnetic information of nanoscale magnetic microstructures can be obtained by Fresnel imaging, Foucault imaging and SmAED. In particular, we report magnetic microstructures associated with magnetic stripes and magnetic skyrmions revealed by Lorentz microscopy with SmAED. SmAED can be applied to the analysis of microstructures in functional materials such as dielectric, ferromagnetic and multiferroic materials.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 67
    Publication Date: 2020-10-07
    Description: In this study, we conducted a quantitative evaluation of dislocation density by scanning electron microscopy electron channeling contrast imaging for α grains of a Ti-6Al-4V alloy deformed at room temperature. The depth of visibility of dislocations is experimentally measured as 140-160 nm by a serial sectioning observation. This result is compared to the theoretical value and applied to evaluate dislocation density. These factors confirm that the theoretically calculated value of the depth of visibility, at five to six times the extinction distance, is valid for the HCP-Ti alloy.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 68
    Publication Date: 2020-10-17
    Description: Senile lentigo or age spots are hyperpigmented macules of skin that commonly develop following long-term exposure to ultraviolet radiation. This condition is caused by accumulation of large numbers of melanosomes (melanin granules) produced by melanocytes within neighboring keratinocytes. However, there is still no consensus regarding the melanosome transfer mechanism in senile lentigo. To date, most pathohistological studies of skin have been two-dimensional and do not provide detailed data on the complex interactions of the melanocyte-keratinocyte network involved in melanosome transfer. We performed a three-dimensional reconstruction of the epidermal microstructure in senile lentigo using three different microscopic modalities to visualize the topological melanocyte-keratinocyte relationship and melanosome distribution. Confocal laser microscopy images showed that melanocyte dendritic processes are more frequently branched and elongated in senile lentigo skin than in normal skin. Serial transmission electron micrographs showed that dendritic processes extend into intercellular spaces between keratinocytes. Focused ion beam-scanning electron micrographs showed that dendritic processes in senile lentigo encircle adjacent keratinocytes and accumulate large numbers of melanosomes. Moreover, melanosomes transferred to keratinocytes are present not only in the supranuclear area but throughout the perinuclear area except on the basal side. The use of these different microscopic methods helped to elucidate the three-dimensional morphology and topology of melanocytes and keratinocytes in senile lentigo. We show that the localization of melanosomes in dendritic processes to the region encircling recipient keratinocytes contributes to efficient melanosome transfer in senile lentigo.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 69
    Publication Date: 2020-09-27
    Description: Ptychography is a coherent diffractive imaging technique that can determine how an electron wave is transmitted through an object by probing it in many small overlapping regions and processing the diffraction data obtained at each point. The resulting electron transmission model describes both phase and amplitude changes to the electron wave. Ptychography has been adopted in transmission electron microscopy (TEM) in recent years following advances in high speed direct electron detectors and computer algorithms which now make the technique suitable for practical applications. Its ability to retrieve quantitative phase information at high spatial resolution makes it a plausible alternative or complement to electron holography. Furthermore, unlike off-axis electron holography, it can provide phase information without an electron bi-prism assembly or the requirement of a minimally structured region adjacent to the region of interest in the object. However, it does require a well calibrated scanning TEM and a well-managed workflow to manage the calibration, data acquisition and reconstruction process to yield a practical technique. Here we detail this workflow and highlight how this is greatly assisted by acquisition management software. Through experimental data and modelling we also explore the similarities and differences between high resolution ptychography and electron holography. Both techniques show a dependence of the recovered phase on the crystalline orientation of the material which is attributable to dynamical scattering. However, the exact nature of the variation differs reflecting fundamental expectations, but nonetheless equally useful information is obtained from electron holography and the ptychographically determined object transmission function.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 70
    Publication Date: 2020-07-10
    Description: In this study, a method was developed for examining the distribution pattern of inorganic substances dispersed in hydrogel-filled medical devices. Transmission electron microscopy (TEM) using ultra-thin cryosectioning (owing to hydrogel’s water content) was performed on contact lenses with an iris pattern in which the distribution pattern of inorganic pigments was problematic. We confirmed the depth and distribution pattern of pigments in the hydrogel. The results indicated that ultra-thin cryosectioning with TEM was effective for inspecting the distribution of inorganic substances in hydrogel-filled devices.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 71
    Publication Date: 2020-08-20
    Description: This study was aimed to verify the cellular interplay between vascular endothelial cells and surrounding cells in the chondro-osseous junction of murine tibiae. Many CD31-positive endothelial cells accompanied with Dolichos Biflorus Agglutinin lectin-positive septoclasts invaded into the hypertrophic zone of the tibial epiphyseal cartilage. MMP9 immunoreactive cytoplasmic processes of vascular endothelial cells extended into the transverse partitions of cartilage columns. In contrast, septoclasts included several large lysosomes which indicate the incorporation of extracellular matrices despite no immunopositivity for F4/80 -a hallmark of macrophage/monocyte lineage. In addition, septoclasts were observed in c-fos-/- mice but not in Rankl-/- mice. Unlike c-fos-/- mice, Rankl-/- mice showed markedly-expanded hypertrophic zone and the irregular shape of the chondro-osseous junction. Immunoreactivity of PDGF-bb, which involved in angiogenic roles in the bone, was detected in not only osteoclasts but also septoclasts at the chondro-osseous junction. Therefore, septoclasts appear to assist the synchronous vascular invasion of endothelial cells at the chondro-osseous junction. Vascular endothelial cells adjacent to the chondro-osseous junction possesses endomucin but not EphB4, whereas those slightly distant from the chondro-osseous junction were intensely positive for both endomucin and EphB4, while being accompanied with ephrinB2-positive osteoblasts. Taken together, it is likely that vascular endothelial cells adjacent to the chondro-osseous junction would interplay with septoclasts for synchronous invasion into the epiphyseal cartilage, while those slightly distant from the chondro-osseous junction would cooperate with osteoblastic activities presumably by mediating EphB4/ephrinB2.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 72
    Publication Date: 2020-08-03
    Description: Since the majority of a tendon’s dry weight is collagen fibers, tendon healing consists mainly of collagen repair and observing three-dimensional networks of collagen fibers with scanning electron microscopy (SEM) is optimal for investigating this process. In this report, a cell-maceration/SEM method was used to investigate extrasynovial- tendon (unwrapped tendon in synovial tissue such as the tendon sheath) healing of an injured Achilles tendon in a rat model. In addition, since mechanical stimulation is important for tendon healing, a novel, tensionless, rat lower leg tendon injury model was established and verified by visualizing the structural change of collagen fibers under tensionless conditions by SEM. This new model was created by transplanting the leg of a rat with a tendon laceration to the back, removing mechanical stimulation. We then compared the process of tendon healing with and without tension using SEM. Under tension, collagen at the tendon stump shows axial alignment and repair that subsequently demarcates the paratenon (connective tissue on the surface of an extrasynovial tendon) border. In contrast, under tensionless conditions, the collagen remains randomly arranged. Our findings demonstrate that mechanical stimulation contributes to axial arrangement and reinforces the importance of tendon tension in wound healing.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 73
    Publication Date: 2020-04-03
    Description: Dendritic spines are small protrusions that receive most of the excitatory inputs to the pyramidal neurons in the neocortex and the hippocampus. Excitatory neural circuits in the neocortex and hippocampus are important for experience-dependent changes in brain functions, including postnatal sensory refinement and memory formation. Several lines of evidence indicate that synaptic efficacy is correlated with spine size and structure. Hence, precise and accurate measurement of spine morphology is important for evaluation of neural circuit function and plasticity. Recent advances in light microscopy and image analysis techniques have opened the way toward a full description of spine nanostructure. In addition, large datasets of spine nanostructure can be effectively analyzed using machine learning techniques and other mathematical approaches, and recent advances in super-resolution imaging allow researchers to analyze spine structure at an unprecedented level of precision. This review summarizes computational methods that can effectively identify, segment and quantitate dendritic spines in either 2D or 3D imaging. Nanoscale analysis of spine structure and dynamics, combined with new mathematical approaches, will facilitate our understanding of spine functions in physiological and pathological conditions.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 74
    Publication Date: 2020-04-01
    Description: Stacking faults are easily formed in silicon carbide (SiC) crystals, and this is also the case for SiC nanowires. The stacking faults exercise influences on SiC’s properties, therefore it is important to understand their formation mechanism and to control their formation for applications of SiC and its nanowires. In this study, we propose a method for investigating stacking faults’ formation mechanism in nanowires and provide its proof of concept. Stacking sequences in a pair of SiC nanowires that were grown from the same metal catalyst nanoparticle were quantified as a pair of binary sequences, and Levenshtein distances between partial sequences extracted from the two sequences were measured to detect similarity between them, and the result was compared with that obtained using a surrogate data of one sequence. The similarity analysis using Levenshtein distances works as a probe for investigating possible influences of some phenomena in the catalyst nanoparticle on the formation of stacking faults. The analysis did not detect a correlation between the two sequences. Although a possibility that the formation of stacking faults in the nanowires were owing to some phenomena in the catalyst nanoparticle cannot be denied, the extrinsic cause in the catalyst nanoparticle was not detected through our analysis in this case.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 75
    Publication Date: 2020-06-26
    Description: Sherds of ancient ceramics potteries, dating back to the seventh century BC and excavated from southern Italy, were analyzed in terms of microstructure and porosity (SEM), elemental composition (EDX), chemical bonding and mineralogical components (FTIR) in order to establish correlation with firing temperature, firing condition and provenance. Si/Al ratio from EDX analysis showed three major categories of raw materials (illite/montmorillonite, kaolinite and mullite), suggesting difference in provenance. Uniformly sized silica nanoparticle (0.7 μm diameter) and trace amount of silver are being reported for the first time in one sample. Anorthite mineral and quartz inclusion was detected by FTIR in certain samples. All samples showed a prominent band for Si-O stretching, which shifted from 1062 cm−1, broadened and appeared as doublet, relative to processing temperature. FTIR results proved incomplete dihydroxylation and undissociated carbonate in three samples, indicating a firing temperature of 700–800°C, whereas other samples were fired above 900°C. Only one sample among these three showed bloating pores in between interconnecting glassy matrix in SEM image, indicating a firing temperature of 1100–1200°C. The absence of magnetite along with significant Fe and Mn content indicated the formation of jacobsite, an iron manganese spinel complex, MnFe2O4, which is responsible for the black gloss effect in two particular samples and can be further confirmed by XRD. The presence of numerous small pores in SEM image of one of these two samples (1.2 μm diameter) was indicative of extended vitrification at higher temperature than the other one. However, magnetite was responsible for black gloss effect in two other samples, proving difference in provenance. Therefore, SEM-EDX and FTIR results can offer valuable insight into the firing conditions, gloss decoration and provenance of ancient ceramic potteries.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 76
    Publication Date: 2020-05-06
    Description: The advent of high-flux, high-brilliance synchrotron radiation (SR) has prompted the development of high-resolution X-ray imaging techniques such as full-field microscopy, holography, coherent diffraction imaging and ptychography. These techniques have strong potential to establish non-destructive three- and four-dimensional nano-imaging when combined with computed tomography (CT), called nano-tomography (nano-CT). X-ray nano-CTs based on full-field microscopy are now routinely available and widely used. Here we discuss the current status and some applications of nano-CT using a Fresnel zone plate as an objective. Optical properties of full-field microscopy, such as spatial resolution and off-axis aberration, which determine the effective field of view, are also discussed, especially in relation to 3D tomographic imaging.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 77
    Publication Date: 2020-05-14
    Description: Conventional imaging for three-dimensional (3D) ultra-architectural analysis of collagen fibers and fibroblasts is time-consuming and requires numerous ultrathin sections to search the target area. Currently, no method allows 3D ultra-architectural analysis of predetermined areas including spatial relationships between collagen fibers and fibroblasts in vitro. Herein, we developed a new method for in vitro analysis of the 3D ultrastructure of fibroblasts and collagen fibers using CLEM optimized for picrosirius red staining and FIB/SEM tomography. Collagen fibers were observed between, rather than on top of, stacked cells. This method offers the advantage of mesoscopic and ultrastructural analysis, thus minimizing bias and ensuring accurate observation.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 78
    Publication Date: 2020-01-15
    Description: The properties of core-shell nanoparticles, which are used for many catalytic processes as an alternative to platinum, depend on the size of both the particle and the shell. It is thus necessary to develop a quantitative method to determine the shell thickness. Pd–Pt core-shell particles were analyzed using scanning transmission electron microscopy (STEM) and energy-dispersive X-ray spectroscopy (EDX). Quantitative EDX line profiles acquired from the core-shell particle were compared to four core-shell models. The results indicate that the thickness of the Pt shell corresponds to two atomic layers. Meanwhile, high-angle annular dark-field STEM images from the same particle were analyzed and compared to simulated images. Again, this experiment demonstrates that the shell thickness was of two atomic layers. Our results indicate that, in small particles, it is possible to use EDX for a precise atomic-scale quantitative analysis.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 79
    Publication Date: 2020-05-13
    Description: Y-branched or side-by-side-branched carbon microtubes with metal filler material were fabricated, and material transport in the branched microtubes with Joule heating was investigated using in situ scanning electron microscopy with micro-electrode probes. When a voltage and electric current were applied, the material enclosed in the microtubes moved from its original position. The movement was not related to the direction of the electric current; therefore, it is concluded that the movement was not due to electromigration, but rather a temperature gradient, volume expansion and increased vapor pressure by Joule heating. In Y-branched microtubes, a part of the metal filler material moved from one branch to another branch, which would be useful for microfluidic flow switching. A cylindrical filler material was also observed to be expelled from a branch while its shape was maintained, and this phenomenon is presumably caused by vaporization-induced high pressure and could find application in micro-mechanical manipulators such as punching needles. In side-by-side-branched carbon microtubes, Joule heating caused thermal volume expansion to fill the spaces in the branches that were initially empty. The microtubes then reverted to a state almost identical to the initial state with empty spaces when the electric current was turned off. These results suggest that thermal volume expansion could be employed for flow switching.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 80
    Publication Date: 2020-04-25
    Description: High refractive index organic solvents are commonly used as an imaging medium in tissue clearing approaches. While effective, such solvents provide serious concerns for the safety of users and the equipment, especially in a central microscopy unit. To overcome these concerns, we have developed a large and reusable imaging chamber compatible with the universal mounting frame AK (PeCon GmbH). This chamber is easy to assemble and significantly improves the working environment in a central microscopy unit, where hazardous chemicals could negatively affect equipment and people. To encourage the uptake of these chambers, the design is made publicly available for download.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 81
    Publication Date: 2020-10-13
    Description: Although the possibility of locating single atom in three dimensions using the scanning transmission of electron microscope (STEM) has been discussed with the advent of aberration correction technology, it is still a big challenge. In this report we have developed deconvolution routines based on maximum entropy method (MEM) and Richardson-Lucy algorithm (RLA), which are applicable to the STEM annular dark-field (ADF) though-focus images to improve the depth resolution. The new 3D deconvolution routines require a limited defocus-range of STEM-ADF images that covers a whole sample and some vacuum regions. Since the STEM-ADF probe is infinitely elongated along the optical axis, a 3D convolution is performed with a 2D convolution over xy-plane using the 2D fast Fourier transform (FFT) in reciprocal space, and a 1D convolution along the z-direction in real space. Using our new deconvolution routines, we have processed simulated focal series of STEM-ADF images for single Ce dopants embedded in wurtzite-type AlN. Applying the MEM, the Ce peaks are clearly localized along the depth, and the peak width is reduced down to almost one half. We also applied the new deconvolution routines to experimental focal series of STEM-ADF images of a monolayer graphene. The RLA gives smooth and high-P/B ratio scattering distribution, and the graphene layer can be easily detected. Using our deconvolution algorithms, we can determine the depth locations of the heavy dopants and the graphene layer within the precision of 0.1 and 0.2 nm, respectively, Thus, the deconvolution must be extremely useful for the optical sectioning with 3D STEM-ADF images.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 82
    Publication Date: 2020-08-03
    Description: We investigate the effect that recording off-axis electron holograms on pixelated detectors, such as charge-coupled devices (CCD) and direct-detection devices (DDD), can have on measured amplitudes and phases. Theory will be developed for the case of perfectly uniform interference fringes illuminating an imperfect detector with gain variations and pixel displacements. We will show that both these types of defect produce a systematic noise in the phase images that depends on the position of the holographic fringes with respect to the detector. Subtracting a reference hologram from the object hologram will therefore not remove the phase noise if the initial phases of the two holograms do not coincide exactly. Another finding is that pi-shifted holograms are much less affected by gain variations but show no improvement concerning geometric distortions. The resulting phase errors will be estimated and simulations presented that confirm the theoretical developments.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 83
    Publication Date: 2020-09-30
    Description: Electron holography was invented for correcting aberrations of the lenses of electron microscopes. It was used to observe the atomic arrangements in crystals after decades of research. Then it was combined with a hardware aberration corrector to enable high-resolution and high-precision analysis. Its applications were further extended to magnetic observations with sub-nanometer resolution. High-resolution electron holography has become a powerful technique for observing electromagnetic distributions in functional materials.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 84
    facet.materialart.
    Unknown
    Oxford University Press
    Publication Date: 2020-02-01
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 85
    Publication Date: 2020-05-23
    Description: Unroofing, which is the mechanical shearing of a cell to expose the cytoplasmic surface of the cell membrane, is a unique preparation method that allows membrane cytoskeletons to be observed by cryo-electron microscopy, atomic force microscopy, freeze-etching electron microscopy and other methods. Ultrasound and adhesion have been known to mechanically unroof cells. In this study, unroofing using these two means was denoted sonication unroofing and adhesion unroofing, respectively. We clarified the mechanisms by which cell membranes are removed in these unroofing procedures and established efficient protocols for each based on the mechanisms. In sonication unroofing, fine bubbles generated by sonication adhered electrostatically to apical cell surfaces and then removed the apical (dorsal) cell membrane with the assistance of buoyancy and water flow. The cytoplasmic surface of the ventral cell membrane remaining on the grids became observable by this method. In adhesion unroofing, grids charged positively by coating with Alcian blue were pressed onto the cells, thereby tightly adsorbing the dorsal cell membrane. Subsequently, a part of the cell membrane strongly adhered to the grids was peeled from the cells and transferred onto the grids when the grids were lifted. This method thus allowed the visualization of the cytoplasmic surface of the dorsal cell membrane. This paper describes robust, improved protocols for the two unroofing methods in detail. In addition, micro-unroofing (perforation) likely due to nanobubbles is introduced as a new method to make cells transparent to electron beams.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 86
    Publication Date: 2020-10-16
    Description: Important breakthroughs in far-field imaging techniques have been made since the first demonstrations of stimulated emission depletion (STED) microscopy. To date, the most straightforward and widespread deployment of STED microscopy has used continuous wave (CW) laser beams for both the excitation and depletion of fluorescence emission. A major drawback of the CW STED imaging technique has been photobleaching effects due to the high optical power needed in the depletion beam to reach sub-diffraction resolution. To overcome this hurdle, we have applied a synchronous detection approach based on modulating the excitation laser beam, while keeping the depletion beam at CW operation, and frequency filtering the collected signal with a lock-in amplifier to record solely the super-resolved fluorescence emission. We demonstrate here that such approach allows an important reduction in the optical power of both laser beams that leads to measurable decreases of photobleaching effects in STED microscopy. We report super-resolution images with relatively low powers for both the excitation and depletion beams. In addition, typical unwanted scattering effects and background signal generated from the depletion beam, which invariably arises from mismatches in refractive-index in the material composing the sample, are largely reduced by using the modulated STED approach. The capability of acquiring super-resolution images with relatively low power is quite relevant for studying a variety of samples, but particularly important for biological species as exemplified in this work.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 87
    Publication Date: 2020-08-11
    Description: In-liquid frequency modulation atomic force microscopy (FM-AFM) has been used for visualizing subnanometer-scale surface structures of minerals, organic thin films and biological systems. In addition, three-dimensional atomic force microscopy (3D-AFM) has been developed by combining it with a three-dimensional (3D) tip scanning method. This method enabled the visualization of 3D distributions of water (i.e. hydration structures) and flexible molecular chains at subnanometer-scale resolution. While these applications highlighted the unique capabilities of FM-AFM, its force resolution, speed and stability are not necessarily at a satisfactory level for practical applications. Recently, there have been significant advancements in these fundamental performances. The force resolution was dramatically improved by using a small cantilever, which enabled the imaging of a 3D hydration structure even in pure water and made it possible to directly compare experimental results with simulated ones. In addition, the improved force resolution allowed the enhancement of imaging speed without compromising spatial resolution. To achieve this goal, efforts have been made for improving bandwidth, resonance frequency and/or latency of various components, including a high-speed phase-locked loop (PLL) circuit. With these improvements, now atomic-resolution in-liquid FM-AFM imaging can be performed at ∼1 s/frame. Furthermore, a Si-coating method was found to improve stability and reproducibility of atomic-resolution imaging owing to formation of a stable hydration structure on a tip apex. These improvements have opened up new possibilities of atomic-scale studies on solid-liquid interfacial phenomena by in-liquid FM-AFM.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 88
    Publication Date: 2020-09-28
    Description: To visualize the fine structure of compacted DNA in Synechococcus elongatus PCC 7942, which appears at a specific time in the regular light/dark cycle prior to cell division, Chrom EM (Ou et al., 2017) with some modifications was applied. After staining DNA with DRAQ5, the cells were fixed and irradiated by red laser in the presence of DAB, and subsequently fixed with OsO4. A system with He-Ne laser (633 nm) was set up for efficient irradiation of the bacterial cells in aqueous solution. The compacted DNA was visualized by TEM, in ultrathin sections as electron dense staining by osmium black.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 89
    Publication Date: 2020-09-18
    Description: In this study, a noise-reduction technique for series low-dose electron holograms using tensor decomposition is demonstrated through simulation. We treated an entire dataset of the series holograms with Poisson noise as a third-order tensor, which is a stack of two-dimensional holograms. The third-order tensor, which is decomposed into a core tensor and three factor matrices, is approximated as a lower-rank tensor using only noise-free principal components. This technique is applied to simulated holograms by assuming a p-n junction in a semiconductor sample. The peak signal-to-noise ratios of the holograms and the reconstructed phase maps have been improved significantly using tensor decomposition. Moreover, the proposed method was applied to a more practical situation of time-resolved in situ electron holography by considering a non-uniform fringe contrast and fringe drift relative to the sample. The accuracy and precision of the reconstructed phase maps were quantitatively evaluated to demonstrate its effectiveness for in situ experiments and low-dose experiments on beam-sensitive materials.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 90
    Publication Date: 2020-07-21
    Description: Ultra-high voltage electron microscopy is useful for research utilizing high-penetration thickness of electron beam, in situ observation, or irradiation effects by the particle characteristics of electrons. In this review, the importance of non-equilibrium materials science research by a combination with irradiation effects and in situ observation is shown, and examples of some research are introduced. For example, crystal-amorphous-crystalline phase transition in intermetallic compounds, non-equilibrium phase transition in pure metallic nanoparticles and nucleation and growth process of electron irradiation-induced crystallization in amorphous nanoparticles will be discussed. Finally, we want to suggest the importance of exploring non-equilibrium materials science based on dynamic structures which has been unexplored.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 91
    Publication Date: 2020-07-21
    Description: The accuracy of electron density distribution analysis using large-angle convergent-beam electron diffraction (LACBED) patterns is evaluated for different convergence angles. An orbital ordered state of FeCr2O4 is used as an example of the analysis. Ideal orbital-ordered and non-ordered states are simulated by using orbital scattering factors. LACBED patterns calculated for the orbital-ordered state were used as hypothetical experimental data sets. Electron density distribution of the Fe 3d orbitals has been successfully reconstructed with a higher accuracy from LACBED patterns with convergence angles larger than 15.2 mrad, which is 4 times as large as that for conventional convergent-beam electron diffraction patterns. Excitation of particular Bloch waves with the aid of LACBED patterns has a key role in the accurate analysis of electron density distributions.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 92
    Publication Date: 2020-06-26
    Description: This paper reviews the basics of electron holography as an introduction of the holography part of this special issue in Microscopy. We discuss the general principle of holography and interferometry regarding measurements and analyses of phase distributions, first using the optical holography. Next, we discuss physical phenomena peculiar to electron waves that cannot be realized by light waves and principles of electromagnetic field detection and observation methods. Furthermore, we discuss the interference optical systems of the electron waves and their features, and methods of reconstruction of the phase information from electron holograms, which are essential for realization of practical electron holography. We note that following this review application of electron holography will be discussed in detail in the papers of this special issue.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 93
    Publication Date: 2020-07-06
    Description: G-protein-coupled receptors (GPCRs) comprise the largest and most diverse cell surface receptor family, with more than 800 known GPCRs identified in the human genome. Binding of an extracellular cue to a GPCR results in intracellular G protein activation, after which a sequence of events, can be amplified and optimized by selective binding partners and downstream effectors in spatially discrete cellular environments. Because GPCRs are widely expressed in the body, they help to regulate an incredible range of physiological processes from sensation to growth to hormone responses. Indeed, it is estimated that ∼ 30% of all clinically approved drugs act by binding to GPCRs. The primary cilium is a sensory organelle composed of a microtubule axoneme that extends from the basal body. The ciliary membrane is highly enriched in specific signaling components, allowing the primary cilium to efficiently convey signaling cascades in a highly ordered microenvironment. Recent data demonstrated that a limited number of non-olfactory GPCRs, including somatostatin receptor 3 and melanin-concentrating hormone receptor 1 (MCHR1), are selectively localized to cilia on several mammalian cell types including neuronal cells. Utilizing cilia-specific cell biological and molecular biological approaches, evidence has accumulated to support the biological importance of ciliary GPCR signaling followed by cilia structural changes. Thus, cilia are now considered a unique sensory platform for integration of GPCR signaling toward juxtaposed cytoplasmic structures. Herein, we review ciliary GPCRs and focus on a novel role of MCHR1 in ciliary length control that will impact ciliary signaling capacity and neuronal function.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 94
    Publication Date: 2020-04-17
    Description: The extended Rayleigh resolution measure was introduced to give a generalized resolution measure that can be readily applied to imaging and resolving particles that have finite size. Here, we make a detailed analysis of the influence of the particle size on this resolution measure. We apply this to scanning electron microscopy, under simple assumption of a Gaussian electron beam intensity distribution and a directly proportional emitted signal yield without detailed consideration of scattering internal to the sample, other than being proportional to the sample thickness. From this, we produce beam-width normalized characteristics relating the particle diameter and resolution measure, while also taking consideration of the reduced signal yield that occurs from smaller particles. From our analysis of these characteristics, which we fit to experimental image data, we see that particle diameters
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 95
    Publication Date: 2020-07-13
    Description: The dynamics of cerebrospinal fluid (CSF) are essential for maintaining homeostasis in the central nervous system. Despite insufficiently detailed descriptions of their structural and molecular properties for a century, cranial arachnoid granulations (CAGs) on meninges have been thought to participate in draining CSF from the subarachnoid space into the dural sinuses. However, recent studies have demonstrated the existence of other types of CSF drainage systems, such as lymphatic vessels adjacent to dural sinus and paravascular space in the brain so-called glymphatic system. Therefore, the role of CAGs in CSF drainage has become dubious. To better understand CAG function, we analyzed the ultrastructure and molecular identity of CAG-like structure on meninges adjacent to the superior sagittal sinus of pigs. Transmission electron microscopy analysis revealed that this structure has a reticular conglomerate consisting of endothelial cells that resembles lymphatic linings. Furthermore, immunohistochemistry and immunoelectron microscopy showed that they express molecules specific to lymphatic endothelial cell. We coined a name ‘CAG-like dural gap (CAG-LDG)’ to this structure and discussed the physiological relevance in terms of CSF drainage.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 96
    Publication Date: 2020-01-28
    Description: Cortactin regulates actin polymerization and stabilizes branched actin network. In neurons, cortactin is enriched in dendritic spines that contain abundant actin polymers. To explore the function of cortactin in dendritic spines, we examined spine morphology and dynamics in cultured neurons taken from cortactin knockout (KO) mice. Histological analysis revealed that the density and morphology of dendritic spines were not significantly different between wild-type (WT) and cortactin KO neurons. Time-lapse imaging of hippocampal slice cultures showed that the extent of spine volume change was similar between WT and cortactin KO neurons. Despite little effect of cortactin deletion on spine morphology and dynamics, actin turnover in dendritic spines was accelerated in cortactin KO neurons. Furthermore, we detected a suppressive effect of cortactin KO on spine head size under the condition of excessive spine enlargement induced by overexpression of a prominent postsynaptic density protein Shank2. These results suggest that cortactin may have a role in maintaining actin organization by stabilizing actin filaments near the postsynaptic density.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 97
    Publication Date: 2020-02-22
    Description: Single-molecule imaging analysis has been applied to study the dynamics and kinetics of molecular behaviors and interactions in living cells. In spite of its high potential as a technique to investigate the molecular mechanisms of cellular phenomena, single-molecule imaging analysis has not been extended to a large scale of molecules in cells due to the low measurement throughput as well as required expertise. To overcome these problems, we have automated the imaging processes by using computer operations, robotics and artificial intelligence (AI). AI is an ideal substitute for expertise to obtain high-quality images for quantitative analysis. Our automated in-cell single-molecule imaging system, AiSIS, could analyze 1600 cells in 1 day, which corresponds to ∼ 100-fold higher efficiency than manual analysis. The large-scale analysis revealed cell-to-cell heterogeneity in the molecular behavior, which had not been recognized in previous studies. An analysis of the receptor behavior and downstream signaling was accomplished within a significantly reduced time frame and revealed the detailed activation scheme of signal transduction, advancing cell biology research. Furthermore, by combining the high-throughput analysis with our previous finding that a receptor changes its behavioral dynamics depending on the presence of a ligand/agonist or inhibitor/antagonist, we show that AiSIS is applicable to comprehensive pharmacological analysis such as drug screening. This AI-aided automation has wide applications for single-molecule analysis.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 98
    Publication Date: 2020-05-26
    Description: Electron staining is generally performed prior to observing organic materials via transmission electron microscopy (TEM) to enhance image contrast. However, electron staining can deteriorate organic materials. Here, we demonstrate electrostatic potential imaging of organic materials via differential phase contrast (DPC) scanning transmission electron microscopy (STEM) without electron staining. Electrostatic potential imaging drastically increases the contrast between different materials. Phase-separated structures in a poly (3-hexylthiophene) (P3HT) and [6,6]-phenyl-C61-butyric acid methyl ester (PCBM) blend that are impossible to observe using conventional STEM are clearly visualized. Furthermore, annealing behavior of the phase-separated structures is directly observed. The morphological transformations in the samples are consistent with their physical parameters, including their glass transition and melting temperatures. Our results indicate that electrostatic potential imaging is highly effective for observing organic materials.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 99
    Publication Date: 2020-05-26
    Description: Differential phase contrast (DPC) imaging in scanning transmission electron microscopy is a technique to visualize electromagnetic field distribution inside specimens at high spatial resolution. However, diffraction contrast strongly hampers electromagnetic contrast in DPC images especially in polycrystalline samples. In this paper, we develop an imaging technique to effectively suppress diffraction contrast in DPC images. It is shown that a magnetic structure in a Nd–Fe–B permanent magnet was clearly visualized by averaging 64 DPC images with various specimen-tilt conditions. This is because the diffraction contrast in DPC images sensitively and randomly varies with crystal orientation and thus almost vanishes by averaging specimen-tilt image series. We further investigated two types of residual diffraction contrast in the tilt-series averaged DPC images: weak contrast inside grains and strong contrast at grain boundaries. We found that the former can be suppressed by averaging more DPC images, whereas the latter can be suppressed by the tilt-series averaging with wider range of specimen tilt. The tilt-series averaging method enables DPC to visualize electromagnetic structures even inside polycrystalline materials.
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
  • 100
    Publication Date: 2020-02-01
    Description: Accurate assessment of three-dimensional (3D) characteristics, such as the shape and size distribution, of discrete elements (e.g. particles, granules, grains, voids, crystals, cells and fibers) is required in various fields. But generally, in practice, two-dimensional (2D) instead of 3D assessment is conducted due to limitations in time, cost or measurement technology (as in microscopic observation of discrete elements). In this study, experimental validation was conducted for a 2D–3D conversion method, developed in 2018, which estimates multiple 3D parameters based on 2D counterparts, using an x-ray computed tomography analysis of silica sand. Six 3D parameters (volume, surface area, long-axis length, sphericity and long/middle and long/short axis ratios) were successfully estimated based on five measured 2D parameters (sectional area, perimeter, long-axis length, circularity and long/short axis ratio).
    Print ISSN: 2050-5698
    Electronic ISSN: 2050-5701
    Topics: Electrical Engineering, Measurement and Control Technology , Natural Sciences in General , Physics
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...