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  • Polymer and Materials Science  (3,442)
  • Cell & Developmental Biology  (1,125)
  • General Chemistry  (1,124)
  • Aerodynamics
  • Aircraft Stability and Control
  • Limnology
  • Seismicity
  • 1985-1989  (5,299)
  • 1960-1964
  • 1945-1949  (494)
  • 1920-1924
  • 1986  (5,299)
  • 1949  (494)
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  • 1985-1989  (5,299)
  • 1960-1964
  • 1945-1949  (494)
  • 1920-1924
Year
  • 1
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    EGS-Gauthier-Villars
    In:  Ann. Geophys., Luxembourg, EGS-Gauthier-Villars, vol. 76, no. 5, pp. 679-702, pp. 2214
    Publication Date: 1986
    Keywords: Seismicity ; paleo
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  • 2
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    In:  Tectonophys., Tokyo, Conseil de l'Europe, vol. 138, no. 1, pp. 255-268, pp. L01306, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: JAPAN ; Seismicity ; Earthquake precursor: prediction research ; Project report/description
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  • 3
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    In:  J. Phys. Earth, Edmonton, Conseil de l'Europe, vol. 34, no. B12, pp. S175-S192, pp. 2340, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismicity ; Subduction zone ; JAPAN ; JPE
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  • 4
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    In:  Bull. Seism. Soc. Am., Basel, Elsevier Science Publishers, vol. 76, no. B11, pp. 967-983, pp. 2519, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Fault zone ; Earthquake ; Seismicity ; BSSA
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  • 5
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    In:  Geologisches Jahrbuch Reihe E Geophysik - geophysics, Minsk, Conseil de l'Europe, vol. E18, no. E36, pp. 3-83, pp. B02405, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Earthquake catalog ; historical ; Seismicity ; Germany
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  • 6
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    In:  J. Phys. Earth, Stuttgart, Pergamon, vol. 34, no. 2, pp. S25-S34, pp. B05315, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Migration of earthquakes ; Seismicity ; JAPAN ; Tectonics ; Plate tectonics ; JPE
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  • 7
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    In:  Phys. Earth Plan. Int., Ottawa, 3-4, vol. 44, no. 6, pp. 264-273, pp. 1057, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismology ; Earthquake precursor: prediction research ; Seismicity ; Earthquake precursor: statistical anal. of seismicity ; PEPI
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  • 8
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    In:  Bull. Seism. Soc. Am., Hannover, Conseil de l'Europe, vol. 76, no. 6, pp. 1001-1009, pp. L24314, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Earthquake precursor: prediction research ; Seismicity ; Earthquake precursor: statistical anal. of seismicity ; BSSA
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  • 9
    Publication Date: 1986
    Keywords: Subduction zone ; Plate tectonics ; Seismicity ; JGR
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  • 10
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    In:  Rev. Geophys., Hannover, FU Berlin, vol. 24, no. 3, pp. 833-874, pp. 5091692, (ISBN: 0-12-018847-3)
    Publication Date: 1986
    Keywords: Plate tectonics ; Subduction zone ; Seismicity ; Lithosphere ; Review article
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  • 11
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    In:  Bull. of the Inst. of Earth Sciences, Academia Sinica, Taipei, Conseil de l'Europe, vol. 6, no. 1, pp. 1-13, pp. L18302, (ISBN: 0-12-018847-3)
    Publication Date: 1986
    Keywords: Earthquake ; Source parameters ; China ; Seismicity ; Aftershocks
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  • 12
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    In:  Phys. Earth Plan. Interiors, Luxembourg, U.S. Geological Survey, vol. 42, no. 24, pp. 205-214, pp. B05309, (ISBN 0-471-26610-8)
    Publication Date: 1986
    Keywords: Fault plane solution, focal mechanism ; Moment tensor ; Source parameters ; Seismicity ; Earthquake catalog ; PEPI ; Dziewonski
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  • 13
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    In:  J. Geol. Soc. India, New York, Am. Soc. Mech. Eng., vol. 28, no. 14, pp. 345-365, pp. L24306, (ISBN: 0534351875, 2nd edition)
    Publication Date: 1986
    Keywords: Seismicity ; Earthquake catalog
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  • 14
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    In:  Geophys. J. R. astr. Soc., Warszawa, Eötvös Lorand Geophysical Institute of Hungaria, vol. 85, no. B7, pp. 43-68, pp. 2342, (ISBN: 0534351875, 2nd edition)
    Publication Date: 1986
    Keywords: Seismicity ; Plate tectonics ; GJRaS
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  • 15
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    In:  U.S. Geological Survey Circular, Dordrecht, American Society of Civil Engineers, vol. 985, no. 3, pp. 161-174, pp. L11307, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismology ; Earthquake ; Seismicity
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  • 16
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    In:  Bull. Seism. Soc. Am., Luxembourg, National Academy of Sciences of the USA, vol. 76, no. 1, pp. 1641-1659, pp. B05311, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismology ; Nuclear explosion ; Magnitude ; Seismicity ; Detectors ; Seismic networks ; BSSA
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  • 17
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    In:  Earthq. Predict. Res., Oslo, Wiley, vol. 4, no. 6, pp. 1-11, pp. B08303, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Earthquake ; Seismicity
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  • 18
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    In:  Earth and planet. Sci. Lett., Kobe, Dec. 6-11, 1993, The Local Organizing Committee for the CRCM '93, vol. 78, no. 2, pp. 237-244, pp. 1893, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismicity ; Tectonics ; Plate tectonics
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  • 19
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    In:  J. Geodynamics, Kobe, Dec. 6-11, 1993, The Local Organizing Committee for the CRCM '93, vol. 6, no. 6, pp. 375-385, pp. TC6001, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismicity ; Antarctica ; Tectonics ; Volcanology
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  • 20
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    In:  Pageoph, Kobe, Dec. 6-11, 1993, The Local Organizing Committee for the CRCM '93, vol. 124, no. 19, pp. 531-566, pp. TC6001, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Crustal deformation (cf. Earthquake precursor: deformation or strain) ; Elasticity ; Seismicity
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  • 21
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    In:  Bull. Seism. Soc. Am., Dordrecht, Netherlands, Dr. W. Junk, vol. 76, no. B10, pp. 65-70, pp. L13307, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Plate tectonics ; Seismicity ; Source parameters ; BSSA
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  • 22
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    In:  J. Phys. Earth, Luxembourg, Deutsche Geophys. Gesellschaft, vol. 34, no. 2, pp. S223-S239, pp. 8045, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismicity ; CRUST ; Earthquake precursor: prediction research ; Geol. aspects ; JPE
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  • 23
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    In:  Geowiss. in unserer Zeit, Berlin, Pergamon, vol. 4, no. 32, pp. 131-138, pp. 1012, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Fault zone ; Geol. aspects ; Seismicity ; Earthquake precursor: prediction research ; Earthquake precursor: deformation or strain
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  • 24
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    In:  J. of Seismol. Res., Taipei, AGU, vol. 9, no. 3-4, pp. 175-184, pp. L06307, 2 pp., (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismology ; Migration of earthquakes ; Seismicity ; JSR
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  • 25
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    Icelandic Meteorological Office
    In:  Reykjavík, Icelandic Meteorological Office, vol. 167, no. XVI:, pp. 385-389, (ISBN 0-12-305355-2)
    Publication Date: 1986
    Keywords: Earthquake hazard ; Seismicity ; Earthquake catalog
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  • 26
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    Saint Louis University
    In:  Garland, Saint Louis University, vol. 1, no. Publ. No. 12, pp. 95-104, (ISBN: 0-08-043930-6)
    Publication Date: 1986
    Keywords: Earthquake catalog ; Seismicity
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  • 27
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    In:  J. Geodynamics, Dordrecht, D. Reidel, vol. 6, no. 6, pp. 263-270
    Publication Date: 1986
    Keywords: Seismicity ; Plate tectonics
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  • 28
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    In:  Bull. Seism. Soc. Am., Luxembourg, Conseil de l'Europe, vol. 76, no. 5, pp. 483-493, pp. 2214
    Publication Date: 1986
    Keywords: Seismicity ; BSSA ; paleo
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  • 29
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    In:  Bull. Seism. Soc. Am., Luxembourg, EGS-Gauthier-Villars, vol. 76, no. 5652, pp. 273-290, pp. 1310
    Publication Date: 1986
    Keywords: Crustal deformation (cf. Earthquake precursor: deformation or strain) ; Seismicity ; BSSA
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  • 30
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    In:  Geophys. J. R. astr. Soc., Warszawa, Bundesanstalt für Geowissenschaften und Rohstoffe, vol. 13, no. 3, pp. 149-152, pp. 2121
    Publication Date: 1986
    Keywords: Hydraulic fracturing ; Seismicity ; GJRaS
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  • 31
    Publication Date: 1986
    Keywords: Crustal deformation (cf. Earthquake precursor: deformation or strain) ; Dislocation ; Finite Element Method ; Volcanology ; Seismicity ; GJI
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  • 32
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    In:  Phys. Earth Plan. Interiors, Luxembourg, U.S. Geological Survey, vol. 43, no. 24, pp. 185-195, pp. B05309, (ISBN 0-471-26610-8)
    Publication Date: 1986
    Keywords: Fault plane solution, focal mechanism ; Moment tensor ; Source parameters ; Seismicity ; Earthquake catalog ; PEPI ; Dziewonski
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  • 33
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    In:  Phys. Earth Plan. Interiors, Luxembourg, U.S. Geological Survey, vol. 41, no. 24, pp. 215-224, pp. B05309, (ISBN 0-471-26610-8)
    Publication Date: 1986
    Keywords: Fault plane solution, focal mechanism ; Moment tensor ; Source parameters ; Seismicity ; Earthquake catalog ; PEPI ; Dziewonski
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  • 34
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    In:  J. Geol. Soc. India, New York, Am. Soc. Mech. Eng., vol. 28, no. 14, pp. 367-406, pp. L24306, (ISBN: 0534351875, 2nd edition)
    Publication Date: 1986
    Keywords: Seismicity ; Earthquake precursor: statistical anal. of seismicity ; Earthquake precursor: prediction research
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  • 35
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    In:  Ann. Rev. Earth Planet. Sci., Dordrecht, 89, vol. 14, no. 5, pp. 149-156, pp. TC5003, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Fault zone ; Seismicity ; Crustal deformation (cf. Earthquake precursor: deformation or strain) ; Rock mechanics ; Geol. aspects ; ANREV
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  • 36
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    In:  Earthq. Res. in China, Washington, D.C., AGU, vol. 2, no. 4, pp. 82-88, pp. 2211, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Geol. aspects ; Fault zone ; Seismicity
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  • 37
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    In:  J. Geophys. Res., Kunming, China, D. Reidel Publishing Company, vol. 91, no. 2, pp. 12587-12631, pp. L09303, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismicity ; Earthquake hazard ; Geol. aspects ; Fault zone ; JGR
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  • 38
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    Geol. Soc. Amer.
    In:  Professional Paper, Open-File Rept., The Geology of North America: The Western North Atlantic Region, Amsterdam, Geol. Soc. Amer., vol. Memoir 157, no. 1, pp. 297-312, (ISBN 0080419208)
    Publication Date: 1986
    Keywords: Stress ; Crustal deformation (cf. Earthquake precursor: deformation or strain) ; Seismicity ; intraplate
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  • 39
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    AGU
    In:  Bull., Open-File Rept., Earthquake Source Mechanics, Maurice Ewing Ser., Washington D.C., AGU, vol. 6, no. 16, pp. 209-216, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1986
    Keywords: Seismicity ; Subduction zone ; scaling ; Magnitude ; seismic Moment ; nokms
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  • 40
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    In:  Geophys. J. R. astr. Soc., Amsterdam, Polish Geothermal Association, vol. 86, no. April, pp. 815-838, pp. B01405, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismicity ; Earthquake precursor: statistical anal. of seismicity ; Statistical investigations ; GJRaS
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  • 41
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    In:  J. Phys. Earth, Reykjavík, Icelandic Meteorological Office, Ministry for the Environment, University of Iceland, vol. 34, no. 3, pp. S13-S24, pp. L01305, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismicity ; Tectonics ; China ; Earthquake precursor: statistical anal. of seismicity ; JPE
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  • 42
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    In:  Bull. Seism. Soc. Am., Kyoto, AGU, vol. 76, no. 3-4, pp. 1491-1496, pp. L07609, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Earthquake precursor: prediction research ; Seismicity ; BSSA
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  • 43
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    In:  Pageoph, Hannover, Polish Geothermal Association, vol. 124, no. 3, pp. 857-874, pp. 1051, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Seismicity ; Rock mechanics ; Laboratory measurements ; Fault plane solution, focal mechanism ; Fault zone ; Tectonics ; Lokajicek
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  • 44
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    In:  Bull. Seism. Soc. Am., Stockholm, 3-4, vol. 76, no. B13, pp. 985-999, pp. L03308, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Earthquake ; Seismicity ; Fault zone ; BSSA
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  • 45
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    National Academy Press
    In:  Active Tectonics, Studies in Geophysics, Washington D.C., National Academy Press, vol. 462, pp. 148-154
    Publication Date: 1986
    Keywords: Seismicity ; Geol. aspects ; Seismology
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  • 46
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    American Geophysical Union
    In:  Earthquake Source Mechanics, Washington, D.C., American Geophysical Union, vol. 37, pp. 259-267, (ISBN 3-540-24988-5)
    Publication Date: 1986
    Keywords: Seismology ; Source parameters ; Seismicity
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  • 47
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    Geol. Soc. Am.
    In:  Extensional Tectonics of the Southwestern United States: A Perspective on Processes and Kinematics, Cambridge, Geol. Soc. Am., vol. 37, no. Special Paper 208, pp. 43-74, (ISBN 0080419208)
    Publication Date: 1986
    Keywords: Crustal deformation (cf. Earthquake precursor: deformation or strain) ; Tectonics ; Seismicity
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  • 48
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    Texas A&M University
    In:  Ph.D. Thesis, Kobe, Dec. 6-11, 1993, Texas A&M University, vol. 10, no. PL-TR-91-2211, pp. 1-217
    Publication Date: 1986
    Keywords: Pattern recognition ; Earthquake precursor: prediction research ; Seismicity
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  • 49
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    Univ. de Paris VII
    In:  Ph. D. thesis, Pasadena, Univ. de Paris VII
    Publication Date: 1986
    Keywords: Earthquake ; Seismicity ; Fault plane solution, focal mechanism
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  • 50
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    In:  J. Geophys. Res., Tokyo, Dt. Geophys. Ges., vol. 91, no. 1, pp. 4891-4908, pp. L06615, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Earthquake precursor: prediction research ; Fault zone ; Seismicity ; Earthquake precursor: deformation or strain ; JGR
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  • 51
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    In:  Tectonophys., Tokyo, Dt. Geophys. Ges., vol. 5, no. 1, pp. 629-648, pp. L06615, (ISSN: 1340-4202)
    Publication Date: 1986
    Keywords: Fault zone ; SAF ; Seismicity ; Geol. aspects
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  • 52
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    Depart. of Geology and Mineralogy, University of Jordan, Amman
    In:  Master of Sc. Thesis, Jordan, Depart. of Geology and Mineralogy, University of Jordan, Amman, vol. C 560, 183 pp., no. 11, pp. 260, (ISBN 3-933346-037)
    Publication Date: 1986
    Keywords: Seismology ; Seismicity ; Tectonics ; Fault zone
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  • 53
    Publication Date: 2011-08-23
    Description: Helicopter rotor aerodynamics is basically the study of unsteady aerodynamic flows in a rotating and translating coordinate system. Current trends in this field are briefly reviewed by examining recent advances in lifting-surface theory, wake modeling, panel methods, and finite-difference models' Examples are used to illustrate selected current methods and some indications of promising future directions are highlighted.
    Keywords: Aerodynamics
    Type: Vertica (ISSN 0360-5450); Volume 11; Nos. 1, 2; 43-63
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  • 54
    Publication Date: 2019-07-13
    Description: A wind-tunnel investigation was conducted in which aerodynamic loads were measured on a small-scale helicopter rotor and a body of revolution located close to it as an idealized model of a fuselage. The objective was to study the aerodynamic interactions as a function of forward speed, rotor thrust, and rotor/body position. Results show that body loads, normalized by rotor thrust, are functions of the ratio between free-stream velocity and the hover-induced velocity predicted by momentum theory.
    Keywords: Aerodynamics
    Type: May 01, 1983; Saint Louis, MO; United States|Journal of the American Helicopters; 29-36
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  • 55
    Publication Date: 2019-07-12
    Description: A plenum for a circulation control rotor aircraft which surrounds the rotor drive shaft (18) and is so constructed that the top (32), outer (38) and bottom (36) walls through compressed air is admitted are fixed to aircraft structure and the inner wall (34) through which air passes to rotor blades (14) rotates with the drive shaft and rotor blades.
    Keywords: Aircraft Stability and Control
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  • 56
    Publication Date: 2019-10-31
    Description: The visualization of laminar to turbulent boundary layer transition plays an important role in flight and wind tunnel aerodynamic testing of aircraft wing and body surfaces. Visualization can help provide a more complete understanding of both transition location as well as transition modes; without visualization, the transition process can be very difficult to understand. In the past, the most valuable transition visualization methods for fight applications included sublimating chemicals and oil flows. Each method has advantages and limitations. In particular, sublimating chemicals are impractical to use in subsonic applications much above 20,000 feet because of the greatly reduced rates of sublimation at lower temperatures (less than -4 degrees Fahrenheit). Both oil flow and sublimating chemicals have the disadvantage of providing only one good data point per flight. Thus, for many important flight conditions, transition visualization has not been readily available. This paper discusses a new method for visualizing transition in fight by the use of liquid crystals. The new method overcomes the limitations of past techniques, and provides transition visualization capability throughout almost the entire altitude and speed ranges of virtually all subsonic aircraft flight envelopes. The method also has wide applicability for supersonic transition visualization in flight and for general use in wind tunnel research over wide subsonic and supersonic speed ranges.
    Keywords: Aerodynamics
    Type: NASA-TM-87666 , NAS 1.15:87666
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  • 57
    Publication Date: 2019-07-13
    Description: Chemical and thermal nonequilibrium phenomena are studied in the stagnation region of a hypervelocity blunt body. This investigation is motivated by the need to predict the heat-transfer rate to the leading edge of aeromaneuvering orbital transfer vehicles. Flight speeds of approximately 10 km/s at altitudes of approximately 80 km are considered for body radii of 1-50 cm. The analysis is based on continuum theory and is applicable to the viscous and incipient merged layer regimes of rarefied flow. A two-species, two-temperature gas model is assumed. Comparisons are made with previous theories, experimental data, and results based on the thermodynamic equilibrium assumption. The equation accounting for vibrational nonequilibrium is presented and its effects on flow properties are discussed. Parameters requiring further investigation are identified. Preliminary results indicate that the inclusion of vibrational relaxation has little effect on the heat-transfer rate for a fully catalytic surface. However, vibrational nonequilibrium may increase the heat-transfer rate to a noncatalytic surface, depending on the degree of nonequilibrium.
    Keywords: Aerodynamics
    Type: AIAA Paper 85-1033 , Progress in Astronautics and Aeronautics: Thermophysical Aspects of Re-Entry Flows; 103; 445-475|Thermophysics; Jun 19, 1985 - Jun 21, 1985; Williamsburg, VA; United States
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  • 58
    Publication Date: 2019-07-13
    Description: The presence of tip stores influences both the aerodynamic and aeroelastic performances of wings. Such effects are more pronounced in the transonic regime. In this study, a theoretical method is developed, for the first time, to compute unsteady transonics of oscillating wings with tip stores. The method is based on the small-disturbance aerodynamic equations or motion from the potential-flow theory. To validate the method, subsonic and transonic aerodynamic computations are made for a wing of low aspect ratio, and they are compared with the available experimental data. The comparisons are favorable. The strong effects of the tip store on the transonic aerodynamics on the wing are also illustrated. The method developed in this study can be used for transonic aeroelastic computations of wings with tip stores.
    Keywords: Aerodynamics
    Type: AIAA Paper 86-0010 , Journal of Aircraft; 23; 8; 662-668|Aerospace Sciences; Jan 06, 1986 - Jan 09, 1986; Reno, NV; United States
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  • 59
    Publication Date: 2019-07-10
    Description: A full span propulsive wing/canard model is to be tested in the NASA Langley Research Center (LaRC) 4 x 7 meter low speed wind tunnel. These tests are a continuation of the tests conducted in Feb. 1984, NASA test No.290, and are being conducted under NASA Contract NAS1-17171. The purpose of these tests is to obtain extensive lateral-directional data with a revised fuselage concept. The wings, canards, and vertical tail of this second test series model are the same as tested in the previous test period. The fuselage and internal flow path have been modified to better reflect an external configuration suitable for a fighter airplane. Internal ducting and structure were changed as required to provide test efficiency and blowing control. The model fuselage tested during the 1984 tests was fabricated with flat sides to provide multiple wing and canard placement variations. The locations of the wing and canard are important variables in configuration development. With the establishment of the desired relative placement of the lifting surfaces, a typically shaped fuselage has been fabricated for these tests. This report provides the information necessary for the second series tests of the propulsive wing/canard model. The discussion in this report is limited to that affected by the model changes and to the second series test program. The pretest report information for test 290 which is valid for the second series test was published in Rockwell report NR 83H-79. This report is presented as Appendix 1 and the modified fuselage stress report is presented as Appendix 2 to this pretest report.
    Keywords: Aerodynamics
    Type: NA-86-0015
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  • 60
    Publication Date: 2019-07-12
    Description: A circulation control aircraft rotor blade having a spanwise Coanda surface 16 and a plurality of spanwise extending flexible composite material panels 18 cooperating with the surface to define slots for the discharge of compressed air from within the blade with each panel having first flexure means 60 associated with screw adjustments 36 for establishing a slot opening preload and second flexure means 62 associated with screw adjustments 38 for establishing a slot maximum opening.
    Keywords: Aircraft Stability and Control
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  • 61
    Publication Date: 2019-07-13
    Description: Prediction of aerodynamic loads on bodies in arbitrary motion is considered from an acoustic point of view, i.e., in a frame of reference fixed in the undisturbed medium. An inhomogeneous wave equation which governs the disturbance pressure is constructed and solved formally using generalized function theory. When the observer is located on the moving body surface there results a singular linear integral equation for surface pressure. Two different methods for obtaining such equations are discussed. Both steady and unsteady aerodynamic calculations are considered. Two examples are presented, the more important being an application to propeller aerodynamics. Of particular interest for numerical applications is the analytical behavior of the kernel functions in the various integral equations.
    Keywords: Aerodynamics
    Type: AIAA Paper 86-1877 , AIAA 10th Aeroacoustics Conference; Jul 09, 1986 - Jul 11, 1986; Seattle, WA; United States
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  • 62
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    Environmental management 10 (1986), S. 623-627 
    ISSN: 1432-1009
    Keywords: Hypsograph ; Limnology ; Hydraulic engineering ; Hydrobiology ; Hydrochemistry ; Mass calculation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Notes: Abstract Hypsographs are graphic depictions of the vertical distributions of volumes or masses of water in lakes, ponds, or reservoirs. Quantitative limnological science or engineering must use a hypsograph, or a more complex equivalent system, to undertake calculations of water constituent concentration data by mathematical weighting. Construction of the graph is simple and described. Exemplary uses of the hypsograph are presented.
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  • 63
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    Journal of mathematical biology 24 (1986), S. 1-24 
    ISSN: 1432-1416
    Keywords: Aerodynamics ; Pollination ; Ephedra ; Computer simulations
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Abstract Computer simulations are used to predict the behavior of pollen grains with different physical properties within the acceleration field created around the ovules of the gymnosperm Ephedra trifurca. A modelling procedure is given that (1) calculates the number of pollen grains captured by an ovule's pollination-droplet and (2) gives a correlation between pollination efficiency and the physical properties (= mass, size) of different types of pollen. Based on this procedure, the number of Ephedra pollen grains captured by micropyles can be less than the number captured from other species. However, the mass and size of Ephedra pollen grains appear to coincide with those predicted to yield a local maximum of pollination efficiency, i.e. slightly larger or smaller values of either mass or size would decrease the probability of capture. In addition, the properties of Ephedra pollen grains operate synergistically in the aerodynamic environment around ovules and are focused to collide with pollination-droplets. By analogy, the properties of Ephedra pollen coincide with those predicted for a localized “adaptive peak”. The physical properties of pollen grain types other than E. trifurca that can maximize pollen capture are not generally represented in the aerobiology of Ephedra during the pollination season. Therefore, the phenology of pollen release, community taxonomic-composition, and the physics of particle capture play collectively important roles in the reproductive success of Ephedra trifurca.
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  • 64
    ISSN: 1573-5133
    Keywords: Meromictic ; Evolution ; Diversity ; Cichlidae ; Productivity ; Aquatic reserves ; Flushing ; Pollution ; Fish introductions ; Lake development ; Limnology ; Fishery management ; Conservation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis The African Great Lakes consist of large, deep rift valley lakes (e.g. Malawi & Tanganyika) and shallower lakes between the Eastern and Western Rifts (e.g. Victoria). They are a group comparable in size to the North American Great Lakes, but are old. Most are seasonally thermally stratified, and wind is the decisive factor that determines the annual cycle of cooling and mixing. Lakes Tanganyika, Malawi and Kivu are meromictic, with deep relict hypolimnia. Large magnitudes and time scales of periodic internal motion, where these have been measured, appear unique among lakes. These lakes harbour the world's richest lacustrine fish faunas, and the family Cichlidae provides the supreme example of geographically circumscribed vertebrate evolution. The lakes provide a unique comparative series of natural laboratories for evolutionary studies. Primary production is generally high, but in the deeper lakes standing stocks of plankton and of small fish species are low. These pelagic populations are characterised by very high P:B ratios. The fisheries are productive and of socio-economic importance. Large-scale mechanised fishing is not compatible with the survival of the diverse fish communities. Cichlids appear especially vulnerable to unselective fishing. Aquatic reserves might offer a means of survival for at least some communities. Various pollution threats exist. Because water retention times are long, extremely long for some deep lakes, and flushing rates are low, the lakes are vulnerable to pollution which would be long-lasting. Introductions of alien fishes have mostly had undesirable or disastrous results. While the faunas are one of the significant natural heritages of mankind, their conservation must realistically be linked to the legitimate development of the lakes for the well-being of the people who live there. Scientific value alone will not protect the lakes. Just as survival of African terrestrial wildlife in extensive reserves depends heavily upon tourism, so also might the cichlid flocks in underwater reserves. Greater interest from the international scientific community is needed to further rational development and conservation of these great lakes.
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  • 65
    ISSN: 1573-5133
    Keywords: Meromictic ; Evolution ; Diversity ; Cichlidae ; Productivity ; Aquatic reserves ; Flushing ; Pollution ; Fish introductions ; Lake development ; Limnology ; Fishery management ; Conservation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis The African Great Lakes consist of large, deep rift valley lakes (e.g. Malawi & Tanganyika) and shallower lakes between the Eastern and Western Rifts (e.g. Victoria). They are a group comparable in size to the North American Great Lakes, but are old. Most are seasonally thermally stratified, and wind is the decisive factor that determines the annual cycle of cooling and mixing. Lakes Tanganyika, Malawi and Kivu are meromictic, with deep relict hypolimnia. Large magnitudes and time scales of periodic internal motion, where these have been measured, appear unique among lakes. These lakes harbour the world's richest lacustrine fish faunas, and the family Cichlidae provides the supreme example of geographically circumscribed vertebrate evolution. The lakes provide a unique comparative series of natural laboratories for evolutionary studies. Primary production is generally high, but in the deeper lakes standing stocks of plankton and of small fish species are low. These pelagic populations are characterised by very high P:B ratios. The fisheries are productive and of socio-economic importance. Large-scale mechanised fishing is not compatible with the survival of the diverse fish communities. Cichlids appear especially vulnerable to unselective fishing. Aquatic reserves might offer a means of survival for at least some communities. Various pollution threats exist. Because water retention times are long, extremely long for some deep lakes, and flushing rates are low, the lakes are vulnerable to pollution which would be long-lasting. Introductions of alien fishes have mostly had undesirable or disastrous results. While the faunas are one of the significant natural heritages of mankind, their conservation must realistically be linked to the legitimate development of the lakes for the well-being of the people who live there. Scientific value alone will not protect the lakes. Just as survival of African terrestrial wildlife in extensive reserves depends heavily upon tourism, so also might the cichlid flocks in underwater reserves. Greater interest from the international scientific community is needed to further rational development and conservation of these great lakes.
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  • 66
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    Biopolymers 25 (1986), S. 1-4 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 67
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    Biopolymers 25 (1986), S. 17-30 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Mononucleotide conformations are important in understanding the structural aspects of nucleic acids and polynucleotides. In order to study the influence of stacking interactions between adjacent bases in a polynucleotide on the preferred conformations of mononucleotides, conformational energy calculations have been carried out on dinucleoside monophosphate fragments. Four base sequences - d(ApT), d(TpA), d(CpG), and d(GpC) -  have been analyzed in the framework of helical structures. Flexibility of the furanose ring has been incorporated in the investigations. Energetically favored conformers of the four compounds correspond to a variety of left- and right-handed uniform helical structures, similar to those of the commonly observed polymorphous forms. Implications of these investigations on the further understanding of double-helical polynucleotide conformations are briefly discussed.
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  • 68
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have measured vibrational CD spectra in the 3600-1250 cm-1 region of two monodisperse, protected octapeptides, which form right-handed 310-helices in CDC13 solution. The spectra are similar in sign pattern to those obtained for right-handed α-helices in solution but are smaller in magnitude and, additionally, provide evidence of some line-shape differences. The delineation of this type of ordered conformation was accomplished by means of 1H-nmr. Such a solution structure is consistent with the x-ray crystal structure of one of these molecules.
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  • 69
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    Biopolymers 25 (1986), S. 135-152 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The interaction of a series of biologically active gastrin fragments with calcium ions has been investigated by CD in trifluoroethanol. It was found that the gastrin octapeptide pGlu10,Nle15-HG[10-17] binds one calcium ion per molecule. The hypothesis is made that the binding involves the C-terminal, biologically important tetrapeptide. When the chain is elongated to the gastrin nonamer pGlu9,Nle15-HG[9-17], a second binding site is available, which is most likely situated at the N-terminal part of the molecule. Further elongation of the peptide chain up to the dodecapeptide pGlu6,Nle15-HG[6-17] does not provide any additional binding site. Saturation of the two sites in the shorter peptides produces different changes in the chiroptical properties in the near- and far-uv. As the chain is elongated, this difference tends to disappear. This result is consistent with an increased conformational order of the longer peptides. In the shorter fragments, the strength of this second binding is appreciably lower than that of the first, while in the longer peptides, the strength of the two bindings is comparable. On the assumption that the variation of the CD properties is proportional to the extent of binding, the constant for the binding of the second ion was determined to be of the order of 5 × 105 L/mol for the nonapeptide.
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    Biopolymers 25 (1986) 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 71
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
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  • 72
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
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  • 73
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    Biopolymers 25 (1986), S. 249-266 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present molecular mechanical calculations on the complexes of netropsin with dA6·dT6, d(TATATA)2, d(CGCGCG)2, and d(CGCGAATTCGCG)2. The complexes were model built using computer graphics and then completely energy refined. Our calculations are consistent with the observed AT preference for netropsin and suggest that mixed sugar pucker geometries should be more stable than uniform in netropsin complexes with poly[d(A-T)]·poly[d(A-T)] and poly(dA)·poly(dt). The netropsin·d(TATATA) and netropsin·dA6·dT6 complexes are significantly different in structure, leading to a possible reason why the observed thermodynamics of netropsin-association with poly[d(A-T)]·poly[d(A-T)] and with poly(dA)·poly(dT) are so different. We also model built and energy refined a structure of netropsin-d(CGCGAATTCGCG)2 using as a guide the nmr data of Patel [(1982) Proc. Natl. Acad. Sci. USA, 79, 6424-6428] and found a three-dimensional structure qualitatively consistent with the NOE enhancements observed by him. After our calculations were completed, we learned of an x-ray structure of a netropsin:d(CGCGAATTCGCG)2 complex, and we compared the structure found in our calculation with the x-ray structure.
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  • 74
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We utilize the dynamic quenching of the triplet state of methylene blue by molecular oxygen to observe changes in the rate at which oxygen can penetrate the helix as a function of base-pair composition. The results indicate that the interior of the oligonucleotide dA-dT is more accessible than dG-dC to small molecules such as dioxygen.
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  • 75
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    Biopolymers 25 (1986) 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
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  • 76
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    Biopolymers 25 (1986), S. 375-392 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The interaction of spermine with nucleic acids is simulated theoretically using refined semi-empirical energy formulae and an advanced minimization procedure. Various nucleic acids are considered: model homopolymeric DNA's, a dodecamer (CGCGAATTCGCG) of type B-DNA, as well as a transfer RNA, tRNAPhe. The dominant role of electrostatic potential in determining the preferential binding sites of spermine is demonstrated in each of these cases and the role of counterions, nucleic acid structure, and base-pair sequence is analyzed.
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  • 77
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    Biopolymers 25 (1986), S. 241-247 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Permittivity ε′ and dielectric loss ε″ of aqueous Na-DNA gels have been measured at 10 GHz in the temperature interval -15 to + 45°C. The experimental results are analyzed in terms of a three-component equation (Na-DNA, interfacial water, bulk water) and yield a value of 35 water molecules/nucleotide interacting with DNA. According to theoretical and experimental data the presence of strongly bonded and weakly bonded water is considered. The modified water exhibits a mean dielectric relaxation time two-or threefold greater than that of bulk water.
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  • 78
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    Biopolymers 25 (1986), S. 291-306 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The effect of solvent viscosity (ηs) and temperature (T) on the shape of the concentration dependence of the principal and total recoils in creep-recovery viscoelastometry experiments has been studied for T4 DNA solutions. The range of DNA concentration (c) was 2 - 40 μg/ml; glycerol, 70-80% v/v, sucrose, 60% v/v; NaCl, 5 mM - 1M; and T, 275 - 323 K. A linear proportionality between recoil and c was obtained at high ηs/T. At low ηs/T, the c-dependence was nonlinear, approaching saturation at higher c. At low c, the slope of both curves was the same. Transition between “linear” and “nonlinear” values occurred over a narrow range of ηs/T (a width of 1-5 K if ηs/T was changed by varying T). (ηs/T)tr, the midpoint of the transition, was independent of solvent properties other than viscosity. Also, (ηs/T)tr increased with c. For a given c, ηs/T values above this transitional value yield linear behavior; below this, nonlinear behavior. The ratio of linear to nonlinear recoil values is a linear function of c with Kc, the slope of this dependence, independent of ηs and T. A kinetic model for the observed nonlinearity of recoil with c is presented. It explains the independence of Kc on ηs and T. An attempt has been made to explain the linear-nonlinear transitions by comparison of τ1 and TR, the lifetime of the contact points of the polymer network in the de Gennes theory. The nonlinear values are consistent with a pseudogel that exists when τ1 〈 TR. At τ1 〉 TR, the DNA behavior is similar to that in dilute solutions (linear values). Thus, the condition for transition is τ1 = TR. However, some unsolved problems remain.
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  • 79
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    Biopolymers 25 (1986), S. 337-350 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: If protein single crystals larger than those suitable for x-ray analysis are obtained, various spectroscopic, thermal, mechanical, and electrical measurements become possible. To understand the factors governing the crystal size, tetragonal lysozyme crystals were grown in batches at 15°C from solutions of different protein and salt concentrations between pH 4-7. The number and size of the crystals, and the protein concentration remaining in the supernatant, varied markedly with the initial salt amount, pH, and cation species, but large crystals always grew when the initial protein concentration (P) was in a narrow range of 2.5-3 times the crystal solubility (S). It was also shown (1) that the period before the first crystals appeared (D) varied as D ∝ (P/S)-n, where n ≃ 5, and (2) that many previous experiments used more supersaturated solutions than the optimal ones thus determined. The reason why large crystals grow only from moderately supersaturated solutions is discussed. The crystal size of the orthorhombic form grown at 40°C was less sensitive to pH and P than the tetragonal form. An effort to measure D and the solubility at 40°C revealed many differences between the two crystal forms, which we ascribe to different interactions to promote crystallization.
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    Biopolymers 25 (1986), S. 393-405 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Pinellin is a plant protein extracted from the rhizome of the Chinese herb Pinellia. It has the ability to abort early pregnancy in mice as well as in rabbits. Studies on the conformational changes of pinellin have been carried out in our laboratory using intrinsic fluorescence and CD. Experimental results show that some tryptophanyl side chains are buried more deeply than others, which results in the heterogeneity of tryptophanyl emission. CD data indicated a high content of β-pleated sheet and β-turn for the backbone conformation. The results of fluorescence and CD measurements both demonstrated the presence of intermediates along the path of denaturation. The following was proposed as the unfolding mechanism of pinellin in 6M guanidine hydrochloride: native state → first intermediate → second intermediate → fully unfolded state.
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    Biopolymers 25 (1986), S. 469-487 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Fourier transform ir (FTIR) spectra of 21 globular proteins have been obtained at 2 cm-1 resolution from 1600 to 1700 cm-1 in deuterium oxide solution. Fourier self-deconvolution was applied to all spectra, revealing that the amide I band of each protein except casein consists of six to nine components. The components are observed at 11 well-defined frequencies, although all proteins do not exhibit components at every characteristic frequency. The root mean square (RMS) deviation of 124 individual values from the 11 average characteristic frequencies is 1.9 cm-1. The observed components are assigned to helical segments, extended beta-segments, unordered segments, and turns. Segments with similar structures do not necessarily exhibit band components with identical frequencies. For instance, the lower frequency beta-structure band can vary within a range of approximately 15 cm-1. The relative areas of the individual components of the deconvolved spectra were determined by a Gauss-Newton, iterative curve-fitting procedure that assumed Gaussian band envelopes for the deconvolved components. The measured areas were used to estimate the percentage of helix and beta-structure for each of 21 globular proteins. The results are in good general agreement with values derived from x-ray data by Levitt and Greer. The RMS deviation between 22 values (alpha- and beta-content of 11 beta-rich proteins measured by both techniques) is 2.5 percentage points; the maximum absolute deviation is 4 percentage points.
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  • 82
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A time-resolved fluorescence study of ethidium bromide (EB) in the presence of poly(dG-dC) and of poly(dG-dC) modified by chlorodiethylenetriamine platinum(II) chloride is presented under solvent conditions in which these polymers adopt the Z-conformation (high ionic strength). It is shown that these polynucleotides can intercalate a very small quantity of EB. The binding parameters have been determined. The fluorescence lifetime of EB is slightly higher when bound to the Z-conformation (≃25 ns) than when bound to the B-conformation (≃23.7 ns). The nature of the salt has been checked. In the presence of 2.5M NaClO4, no transition from the Z-conformation to another conformation is observed when EB is added. On the contrary, in the presence of 4.25M NaCl, EB induces a cooperative transition from the Z-conformation to a conformation characterized by a much higher affinity for EB intercalation. In the case of poly(dG-dC) this last conformation is identical to the one observed at low ionic strength (B-conformation), but in the case of the platinated polymer this conformation is slightly different, as judged by the smaller value of the fluorescence lifetime of the intercalated EB.
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    Biopolymers 25 (1986), S. 539-554 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Intensities of polarized fluorescence from ethidium bound to phage λ DNA undergoing agarose gel electrophoresis were measured. The intensities were strongly field dependent at voltage gradients of 8 V/cm, consistent with a partial orientation of DNA helices in the direction of electrophoresis about 500 times larger than seen in the same field in solution. Such an orientation was predicted by a reptation model of gel electrophoresis advanced by Lumpkin et al. [(1985) Biopolymers, 24, 1573-1593]. The present results can be fit successfully to this theory with a single adjustable parameter, the gel-DNA contact distance. Also, λ DNA electrophoretic mobilities in the same concentration gel were determined using the same buffer system. Both orientation and mobility measurements can be fit to the reptation theory within a factor of two using the same values of two parameters, the gel-DNA contact distance and the ratio of DNA charge to frictional coefficient.
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    Biopolymers 25 (1986), S. 527-537 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The association of heparin with thrombin was investigated by fluorometric titration. A maximum of 25% of the fluorescence of fluorescein-labeled heparin (FTC-heparin) was quenched at thrombin saturation in the absence of NaCl. FTC-heparin (H) associated tightly with thrombin (T) and the association constant of the ternary complex, H2T, formed in the absence of NaCl, was calculated to be 1.7 × 108M-1. However, the association was strongly influenced by the NaCl concentration, and the association constant of the equimolar complex, HT, formed in 0.15M NaCl was found to be 1 × 106M-1. The first-order rate constant, kapp, for inactivation of thrombin by antithrombin III (AT III) and low-affinity heparin (LA-heparin) was comparable with that of high-affinity heparin (HA-heparin) in the absence of NaCl, but decreased with an increase in the concentration of NaCl. The decreased enhancement of the thrombin-AT III reaction by LA-heparin at high NaCl concentration appeared to result from a decreased association of thrombin with LA-heparin, thus reducing the formation of the ternary complex, thrombin-LA-heparin-AT III.
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    Biopolymers 25 (1986), S. 607-625 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electron-diffraction pattern of an oriented film of poly(α-aminoisobutyric acid) in the 310-helical conformation has been analyzed. The conformation was obtained by a linked-atom least-squares refinement of average values from crystal structures. Specimens treated with dichloracetic acid, to improve their crystallinity, conform to space group R3c with a = 21.8 Å, c = 5.95 Å. The structure contains channels that can accommodate molecules of dichloracetic acid. One molecule of acid per six residues fills the channels, and the R-factor then is 34% using 23 reflections. Ir evidence is presented to show that the acid may hydrogen bond to the peptide groups. Some reflections occasionally observed on the diffraction photographs are attributed to a 15/4 α-helix. The significance of the results is considered in relation to Aib-containing peptides.
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  • 86
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    Biopolymers 25 (1986), S. 639-654 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Four different types of ir experiments, involving changes in pH, changes in pressure, and the use of nonaqueous solvents, and with either albumin molecules dissolved in saline or adsorbed albumin films, support the hypothesis that the bandwidth of the amide I vibration of albumin is directly related to the amount of bound water in this protein. From the amide I band narrowing and the amide I shift to higher frequencies, it is proposed that a more ordered helix structure results as the amount of bound water is decreased.
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  • 87
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have recorded one-dimensional exchangeable proton and two-dimensional nonexchangeable proton nmr spectra on the complex of netropsin with the self-complementary d(G-G-T-A-T-A-C-C) duplex in aqueous solution between 25° and 35°C. The antibiotic amide, pyrrole, and methylene protons, and the nucleic acid base and sugar H1′, H2′, H2″, and H3′ protons, have been assigned from an analysis of the two-dimensional nuclear Overhauser effect (NOESY) spectra of the complex. We observe intermolecular NOEs between the antibiotic concave face amide, pyrrole, and CH2 resonances, and the adenosine H2 and sugar H1′ protons of base-pairs T3·A6 and A4·T5 in the central TATA core of the d(G1-G2-T3-A4-T5-A6-C7-C8) duplex. We present a molecular model outlining these seven antibiotic-DNA contacts for the complex in solution. The observed line-broadening of several base and sugar protons at the TATA minor groove netropsin binding site in the complex at 35°C are interpreted in terms of intermediate exchange between two orientations of bound netropsin on the duplex.
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  • 88
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The amino acid sequence of the collagen α1(I) chain (calf) is analyzed. Deviations of random tripeptide distribution leads to the definition of clusters. Inside these regions, collagen-typical tripeptides are located. Besides Gly-Pro-Hyp, Gly-Pro-Ala, and Gly-Ala-Hyp, the polar sequences Gly-Glu-Hyp, Gly-Ala-Arg, Gly-Glu-Arg, and Gly-Pro-Lys form typical sequences. The neighborhood of each tripeptide is analyzed and classified. The proximity to the collagen-typical tripeptides is registered. Cluster theory: Less-typical sequences also fold as members of the collagen triple helix and they are as reasonable as well as important for the collagen structure as the cluster tripeptides, but only the latter are important for the nucleation of the triple-helical folding.
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  • 89
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    Biopolymers 25 (1986), S. 1087-1093 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Solvent accessible peptide bonds in proteins exhibit a 1-3° compression of the OCN bond angle and a corresponding expansion of the NCCa bond angle, relative to buried peptide bonds. These changes are consistent with an increase in hydrogen bonding to the carbonyl oxygen accompanying solvent exposure (J. D. Dunitz and F. K. Winkler, (1975) Acta Cryst. B31, 251-263). For amphiphilic structures such as α-helices, systematic differences in peptide-bond geometry between solvent-exposed and buried residues will generate significant curvature. A decrease of 4° in the OCN bond angle between hydrophilic and hydrophobic sides of an amphiphilic helix will lead to smooth bending, with a radius of curvature of about 70 Å. This curvature is in the range observed for α-helices in proteins. Helix curvature is estimated to have only a small effect on the magnitude and direction of the helical dipole moment.
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  • 90
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    Biopolymers 25 (1986), S. 1157-1175 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Small-angle neutron scattering (SANS) was used to examine concentrated bovine serum albumin solutions of up to 20% protein w/v. At higher protein concentrations, scattering data show distinct features that can be ascribed to strong intermolecular interactions. Differential scattering cross-sections are fitted to a theoretical model of interparticle potential consisting of a hard core plus an exponentially decaying “tail.” For moderate ionic strength (0.03M K Acetate, pH 5.9), the intermolecular interaction agrees with the double-layer repulsive part of the well-known DLVO (Derjaguin, Landau, Verwey, Overbeek) theory for interacting colloidal particles. We thus demonstrate that it is possible to determine size parameters and the surface charge of protein molecules in dense solutions. At high salt concentrations (≥0.2M NaCl) data can be fitted by the same potential model, although interpretation in terms of DLVO theory is not possible. Even in this case, however, “effective” molecular size and potential parameters can be determined.
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  • 91
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    Biopolymers 25 (1986), S. 1179-1184 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 92
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    Biopolymers 25 (1986), S. 1229-1247 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A computational method for attempting to predict protein complexes from the coordinates of the individual proteins has been developed. It is based on matching complementary patterns of knobs and holes. The computer algorithm correctly and uniquely predicts the association of the alpha and beta subunits to form the αβ dimer corresponding to the α1β1 interface in the hemoglobin tetramer. It fails to correctly dock trypsin inhibitor onto trypsin. Nevertheless, this lone success is still a significant advance over previous protein-docking algorithms. The method is also important because it introduces several ways to measure the shape of protein surface regions.
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  • 93
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    Biopolymers 25 (1986), S. 1209-1228 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We studied the interactions of the substitution-inert inversion-labile complexes Fe(bipy)32+ and Fe(phen)32+ [and the inversion-stable complex Ru(bipy)32+] with DNA. The association of these complexes to DNA is mainly electrostatic, and Fe(phen)32+ shows a more effective binding to DNA than the two bipyridyl complexes, possibly owing to a different binding mode. The interactions are enantioselective, leading to a Pfeiffer shift in the diastereomeric inversion equilibria and an excess of the Δ-enantiomer of Fe(phen)32+ and Fe(bipy)32+, which is directly monitorable through CD. The partition constants for the inversion equilibrium range from 1.3 to 2.0 for Fe(bipy)32+ and Fe(phen)32+, depending on ionic conditions. From flow LD information about the orientation of the complexes on DNA was obtained: it is consistent with a fit of the Δ-enantiomer in the major groove of the right-handed DNA helix. The mechanisms of interaction are discussed against equilibrium, spectroscopic, and kinetic data.
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  • 94
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    Biopolymers 25 (1986), S. 1283-1297 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The distribution of bound Mn2+ ions about poly(rI)·poly(rC) has been studied by measuring the effect of this paramagnetic metal ion on the relaxation behavior of poly(rI)·poly(rC) protons. By combining selective spin - lattice and spin - spin relaxation rates for various protons, some of the principle regions of ion association can be identified. The relaxation data on the CH6 proton are consistent with a 〈 10% occupancy of phosphate inner-sphere binding sites. The broadening of the imino proton resonance requires a substantial occupancy of sites located in the major groove, possibly near IN7. This would also be consistent with the observation that IH8 resonance is the proton most susceptible to relaxation by Mn2+. The relaxation data for the IH2 proton indicate a relatively low occupancy of minor-groove binding sites (e.g., IN3).
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  • 95
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The combination of ultrafiltration and difference spectroscopy allows the quantitative determination of spectra of thionine bound to heparin. The spectra of the bound dye do not depend on the degree of coverage; this and the shape of the Scatchard plot show that “all-or-none” binding is valid. A calculus of variations based on a modification of the Hill plot shows that aggregates of seven thionine cations are bound. Tetrasaccharides with an average charge of two carboxylate and five sulfate groups are suggested to be the binding sites. The binding constant given for one mole thionine is 4.4 · 105 M-1. The Gibbs enthalpy for binding of one mole of thionine is -31.7 kJ·M-1 at 20°C.
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  • 96
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The kinetics of ethidium's intercalative binding to DNA packaged in bacteriophage T7 and two T7 deletion mutants have been determined, using enhancement of fluorescence to quantitate binding. At a constant ethidium concentration, the results can be described as first-order binding with two different rate constants, k1* (= k1 + k-1) and k2* (= k2 + k-2). The larger rate constant (k1*) was at least four orders of magnitude smaller than the comparable first-order forward rate constant for binding to DNA released from its capsid. At 25°C values of k1* decreased as the amount of DNA packaged per internal volume increased. This latter observation indicates that the rate of ethidium's binding to packaged T7 DNA is limited by an event that occurs inside of the DNA-containing region of T7, not by the crossing of T7 capsid's outer shell. Arrhenius plots of kM1* are biphasic, indicating a transition for packaged DNA at a temperature of 20°C. The data indicate that k1* s are limited by either sieving of ethidium during its passage through the packaged DNA or subsequent hindered intercalation.
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  • 97
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    Biopolymers 25 (1986) 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 98
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    Biopolymers 25 (1986), S. 1399-1417 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The three-dimensional structure was determined by x-ray crystallography for d(T[p](CE)T), a uv photoproduct of the cyanoethyl (CE) derivative of d(TpT), having the cis-syn cyclobutane (CB) geometry and the S-configuration at the chiral phosphorus atom. The crystals of C23H30N5O12P · 2H2O belong to the orthorhombic space group P212121 (Z = 4), with cell dimensions a = 11.596 Å, b = 14.834 Å, and c = 15.946 Å, containing two water molecules per asymmetric unit. The CB ring is puckered with a dihedral angle of 151°. The two pyrimidine bases are rotated by -29° from the position of direct overlap of their corresponding atoms. This represents a major distortion of DNA, since in DNA adjacent thymines are rotated by +36°. The pyrimidine rings are puckered with Cremer-Pople parameters for T[p] and in parentheses [p]T: Q: 0.24 Å (0.31 Å); θ: 123° (120°); φ: 141° (86°). These represent half-chairs designated as 6H1 (T[p]) and 6H5 ([p]T). The CB and pyrimidine ring conformations are interrelated, and we postulate that they execute a coupled interconversion in solution. The T[p] segment has the syn glycosyl conformation, a 2T3 sugar pucker, and gauche- conformation at C4′-C5′; the [p]T segment is anti, 3T4, trans. The C5′-O5′ torsion of the [p]T unit is -124.5°, and the C3′-O3′ torsion of the T[p] unit is -152.9°. Bond angles and bond lengths involving the phosphorus atom are similar to those of other phosphotriesters. The P-O3′ and P-05′ torsion angles are -138.1° and 58.6°, respectively. Several intermolecular (but no intramolecular) hydrogen bonds are found in the crystal.
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  • 99
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    Biopolymers 25 (1986), S. 1505-1517 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Light-scattering techniques have been used to measure the z-average radius of gyration Rg z-average translational diffusion coefficient Dt and weight-average molecular weight Mw of porcine submaxillary mucin (PSM) in solution. PSM isolated at low shear in the presence of protease inhibitors has a Mw about twice as large as a sample prepared without these precautions. The former sample has a Mw of 17 × 106 in 0.1M NaCl, which decreases to 8 × 106 in 6M guanidine hydrochloride (GdnHCl) and then to 2 × 106 on addition of 0.1M mercaptoethanol to the 6M GdnHCl solution. The Rg or D-1t values obtained for PSM in this work superimpose with those of other authors for different mucin glycoproteins, leading to linear log-log relationships to the molecular weight of the protein core. Comparison of these results with those in the literature for denatured proteins suggest that mucins are linear random coils in which the protein core is stiffened by the presence of the oligosaccharide side chains. The length of the oligosaccharides and the nature of the solvent have little effect on the extension of the protein core. This suggests that the stiffness of the protein core is maintained by steric repulsion of the residues at the beginning of the oligosaccharide chains.
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  • 100
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    Biopolymers 25 (1986), S. 1493-1504 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformation of melittin, a surface-active polypeptide, in solution was studied by CD spectra between 190 and 240 nm. The molecule was essentially unordered (possibly with a trace of helix) in water without salt at neutral pH. Upon deprotonation of four of the six cationic groups at pH 12 the polypeptide became partially helical (about 35%). The addition of NaDodSO4 to an aqueous melittin solution first caused the solution to become turbid but it became clear again in excess surfactant solution. The conformational changes depended on the molar NaDodSO4/melittin ratio, R. With R from 2.34 to 23.4, the melittin solution was turbid and the polypeptide conformation was probably a mixture of α-helix and β-sheets. This was supported by the ir spectrum of the turbid solution, which indicated the presence of both conformations. With R = 46.8 or 468 (1 or 10 mM NaDodSO4) the polypeptide conformation was characteristic of an α-helix, about 70-80% of the molecule, regardless of whether the surfactant was above or below its critical micelle concentration. This compared well with the x-ray results of 92% helix in crystals. The lower helicity of melittin in NaDodSO4 solution might be attributed to the end effects that destabilize the first and last turn of an helix at its N- and C-terminus, respectively.
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