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  • American Physical Society (APS)  (18,604)
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  • 1
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    Quality Assessment of a 1985-2007 Mediterranean Sea re-analysis (2011)
    American Meteorological Society
    Details
    Publication Date: 2017-04-04
    Description: A simulation and two re-analyses from 1985 to 2007 have been produced for the Mediterranean Sea using different assimilation schemes: a Reduced Order Optimal Interpolation (SOFA) and a three-dimensional variational scheme (OceanVar). The observational data set consists of vertical temperature and salinity in-situ profiles and along-track satellite sea-level anomalies; daily mean fields of satellite sea surface temperature are used for correcting the air-sea fluxes. This paper assesses the quality of the re-analyses with respect to observations and the simulation. Both the SOFA and OceanVar schemes give very similar root mean square errors and biases for temperature and salinity fields compared with the assimilated observations. The largest errors are at the thermocline level and in regions of large eddy field variability. However, OceanVar gives 20% better results for sea-level anomaly root mean square error.
    Description: This work was supported by the European Commision MyOcean Project (SPA.2007.1.1.01-development of upgrade capabilities for existing GMES fast-track services and related operational services; Grant Agreement: 218812-1-FP7-SPACE 2007- 1) and by the CIRCE project, founded by the European Commission’s 6th Framework Programme through contract no. 036961. We would also thank the Istituto Nazionale di Geofisica e Vulcanologia (INGV) and the Centro Euro-Mediterraneo per i Cambiamenti Climatici (CMCC) for facilities support.
    Description: In press
    Description: 4.6. Oceanografia operativa per la valutazione dei rischi in aree marine
    Description: JCR Journal
    Description: reserved
    Keywords: Mediterranean Sea Circulation ; Data Assimilation ; re-analysis ; 03. Hydrosphere::03.01. General::03.01.05. Operational oceanography ; 03. Hydrosphere::03.03. Physical::03.03.02. General circulation
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 2
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    Arctic Ocean warming contributes to reduced polar ice cap (2011)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2010. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 40 (2010): 2743–2756, doi:10.1175/2010JPO4339.1.
    Description: Analysis of modern and historical observations demonstrates that the temperature of the intermediate-depth (150–900 m) Atlantic water (AW) of the Arctic Ocean has increased in recent decades. The AW warming has been uneven in time; a local 1°C maximum was observed in the mid-1990s, followed by an intervening minimum and an additional warming that culminated in 2007 with temperatures higher than in the 1990s by 0.24°C. Relative to climatology from all data prior to 1999, the most extreme 2007 temperature anomalies of up to 1°C and higher were observed in the Eurasian and Makarov Basins. The AW warming was associated with a substantial (up to 75–90 m) shoaling of the upper AW boundary in the central Arctic Ocean and weakening of the Eurasian Basin upper-ocean stratification. Taken together, these observations suggest that the changes in the Eurasian Basin facilitated greater upward transfer of AW heat to the ocean surface layer. Available limited observations and results from a 1D ocean column model support this surmised upward spread of AW heat through the Eurasian Basin halocline. Experiments with a 3D coupled ice–ocean model in turn suggest a loss of 28–35 cm of ice thickness after 50 yr in response to the 0.5 W m−2 increase in AW ocean heat flux suggested by the 1D model. This amount of thinning is comparable to the 29 cm of ice thickness loss due to local atmospheric thermodynamic forcing estimated from observations of fast-ice thickness decline. The implication is that AW warming helped precondition the polar ice cap for the extreme ice loss observed in recent years.
    Description: This study was supported by JAMSTEC (IP and VI), NOAA (IP, VI, and ID), NSF (IP,VA,VI, ID, JT, andMS),NASA(IP andVI), BMBF (ID), and UK NERC (SB) grants.
    Keywords: Arctic ; Forcing ; Temperature ; Sea ice ; Heating ; Coupled models
    Repository Name: Woods Hole Open Access Server
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  • 3
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    Oceanic internal-wave field : theory of scale-invariant spectra (2011)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2010. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 40 (2010): 2605–2623, doi:10.1175/2010JPO4132.1.
    Description: Steady scale-invariant solutions of a kinetic equation describing the statistics of oceanic internal gravity waves based on wave turbulence theory are investigated. It is shown in the nonrotating scale-invariant limit that the collision integral in the kinetic equation diverges for almost all spectral power-law exponents. These divergences come from resonant interactions with the smallest horizontal wavenumbers and/or the largest horizontal wavenumbers with extreme scale separations. A small domain is identified in which the scale-invariant collision integral converges and numerically find a convergent power-law solution. This numerical solution is close to the Garrett–Munk spectrum. Power-law exponents that potentially permit a balance between the infrared and ultraviolet divergences are investigated. The balanced exponents are generalizations of an exact solution of the scale-invariant kinetic equation, the Pelinovsky–Raevsky spectrum. A small but finite Coriolis parameter representing the effects of rotation is introduced into the kinetic equation to determine solutions over the divergent part of the domain using rigorous asymptotic arguments. This gives rise to the induced diffusion regime. The derivation of the kinetic equation is based on an assumption of weak nonlinearity. Dominance of the nonlocal interactions puts the self-consistency of the kinetic equation at risk. However, these weakly nonlinear stationary states are consistent with much of the observational evidence.
    Description: This research is supported by NSF CMG Grants 0417724, 0417732 and 0417466. YL is also supported by NSF DMS Grant 0807871 and ONR Award N00014-09-1-0515.
    Keywords: Waves ; Oceanic ; Internal waves ; Spectral analysis
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Shelf circulation and cross-shelf transport out of a bay driven by eddies from an open-ocean current. Part I : interaction between a barotropic vortex and a steplike topography (2011)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2011. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 41 (2011): 889–910, doi:10.1175/2010JPO4496.1.
    Description: This paper examines interaction between a barotropic point vortex and a steplike topography with a bay-shaped shelf. The interaction is governed by two mechanisms: propagation of topographic Rossby waves and advection by the forcing vortex. Topographic waves are supported by the potential vorticity (PV) jump across the topography and propagate along the step only in one direction, having higher PV on the right. Near one side boundary of the bay, which is in the wave propagation direction and has a narrow shelf, waves are blocked by the boundary, inducing strong out-of-bay transport in the form of detached crests. The wave–boundary interaction as well as out-of-bay transport is strengthened as the minimum shelf width is decreased. The two control mechanisms are related differently in anticyclone- and cyclone-induced interactions. In anticyclone-induced interactions, the PV front deformations are moved in opposite directions by the point vortex and topographic waves; a topographic cyclone forms out of the balance between the two opposing mechanisms and is advected by the forcing vortex into the deep ocean. In cyclone-induced interactions, the PV front deformations are moved in the same direction by the two mechanisms; a topographic cyclone forms out of the wave–boundary interaction but is confined to the coast. Therefore, anticyclonic vortices are more capable of driving water off the topography. The anticyclone-induced transport is enhanced for smaller vortex–step distance or smaller topography when the vortex advection is relatively strong compared to the wave propagation mechanism.
    Description: Y. Zhang acknowledges the support of theMIT-WHOI Joint Programin Physical Oceanography, NSF OCE-9901654 and OCE-0451086. J. Pedlosky acknowledges the support of NSF OCE- 9901654 and OCE-0451086.
    Keywords: Transport ; Eddies ; Barotropic flow ; Topographic effects ; Vortices ; Currents ; Potential vorticity ; Rossby waves
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Deep-water chemosynthetic ecosystem research during the Census of Marine Life decade and beyond : a proposed deep-ocean road map (2011)
    Public Library of Science
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2011. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 6 (2011): e23259, doi:10.1371/journal.pone.0023259.
    Description: The ChEss project of the Census of Marine Life (2002–2010) helped foster internationally-coordinated studies worldwide focusing on exploration for, and characterization of new deep-sea chemosynthetic ecosystem sites. This work has advanced our understanding of the nature and factors controlling the biogeography and biodiversity of these ecosystems in four geographic locations: the Atlantic Equatorial Belt (AEB), the New Zealand region, the Arctic and Antarctic and the SE Pacific off Chile. In the AEB, major discoveries include hydrothermal seeps on the Costa Rica margin, deepest vents found on the Mid-Cayman Rise and the hottest vents found on the Southern Mid-Atlantic Ridge. It was also shown that the major fracture zones on the MAR do not create barriers for the dispersal but may act as trans-Atlantic conduits for larvae. In New Zealand, investigations of a newly found large cold-seep area suggest that this region may be a new biogeographic province. In the Arctic, the newly discovered sites on the Mohns Ridge (71°N) showed extensive mats of sulfur-oxidisng bacteria, but only one gastropod potentially bears chemosynthetic symbionts, while cold seeps on the Haakon Mossby Mud Volcano (72°N) are dominated by siboglinid worms. In the Antarctic region, the first hydrothermal vents south of the Polar Front were located and biological results indicate that they may represent a new biogeographic province. The recent exploration of the South Pacific region has provided evidence for a sediment hosted hydrothermal source near a methane-rich cold-seep area. Based on our 8 years of investigations of deep-water chemosynthetic ecosystems worldwide, we suggest highest priorities for future research: (i) continued exploration of the deep-ocean ridge-crest; (ii) increased focus on anthropogenic impacts; (iii) concerted effort to coordinate a major investigation of the deep South Pacific Ocean – the largest contiguous habitat for life within Earth's biosphere, but also the world's least investigated deep-ocean basin.
    Description: Alfred P. Sloan Foundation for the ChEss-Census of Marine Life programme (2002–2010) and the SYNDEEP synthesis project (2009–2010) (www.coml.org). Fondation Total for the ChEss synthesis phase and SYNDEEP synthesis project (2007–2010) (http://fondation.total.com/). Petersen Fellowship in IFM-GEOMAR to CRG.
    Repository Name: Woods Hole Open Access Server
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  • 6
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    Numerical investigations of seasonal and interannual variability of North Pacific Subtropical Mode Water and its implications for Pacific climate variability (2011)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2011. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 24 (2011): 2648–2665, doi:10.1175/2010JCLI3435.1.
    Description: North Pacific Subtropical Mode Water (NPSTMW) is an essential feature of the North Pacific subtropical gyre imparting significant influence on regional SST evolution on seasonal and longer time scales and, as such, is an important component of basin-scale North Pacific climate variability. This study examines the seasonal-to-interannual variability of NPSTMW, the physical processes responsible for this variability, and the connections between NPSTMW and basin-scale climate signals using an eddy-permitting 1979–2006 ocean simulation made available by the Estimating the Circulation and Climate of the Ocean, Phase II (ECCO2). The monthly mean seasonal cycle of NPSTMW in the simulation exhibits three distinct phases: (i) formation during November–March, (ii) isolation during March–June, and (iii) dissipation during June–November—each corresponding to significant changes in upper-ocean structure. An interannual signal is also evident in NPSTMW volume and other characteristic properties with volume minima occurring in 1979, 1988, and 1999. This volume variability is correlated with the Pacific decadal oscillation (PDO) with zero time lag. Further analyses demonstrate the connection of NPSTMW to the basin-scale ocean circulation. With this, modulations of upper-ocean structure driven by the varying strength and position of the westerlies as well as the regional air–sea heat flux pattern are seen to contribute to the variability of NPSTMW volume on interannual time scales.
    Description: Support for this research was provided by the Partnership for Advancing Interdisciplinary Modeling (PARADIGM), a National Ocean Partnership Program and by a NASA Modeling, Analysis, and the Prediction (MAP) project called Estimating the Circulation and Climate of the Ocean, Phase II (ECCO2).
    Keywords: Seasonal variability ; Interannual variability ; North Pacific Ocean ; Subtropics ; Climate variability ; Pacific decadal oscillation
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  • 7
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    Toward an understanding of the molecular mechanisms of barnacle larval settlement : a comparative transcriptomic approach (2011)
    Public Library of Science
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2011. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 6 (2011): e22913, doi:10.1371/journal.pone.0022913.
    Description: The barnacle Balanus amphitrite is a globally distributed biofouler and a model species in intertidal ecology and larval settlement studies. However, a lack of genomic information has hindered the comprehensive elucidation of the molecular mechanisms coordinating its larval settlement. The pyrosequencing-based transcriptomic approach is thought to be useful to identify key molecular changes during larval settlement. Using 454 pyrosequencing, we collected totally 630,845 reads including 215,308 from the larval stages and 415,537 from the adults; 23,451 contigs were generated while 77,785 remained as singletons. We annotated 31,720 of the 92,322 predicted open reading frames, which matched hits in the NCBI NR database, and identified 7,954 putative genes that were differentially expressed between the larval and adult stages. Of these, several genes were further characterized with quantitative real-time PCR and in situ hybridization, revealing some key findings: 1) vitellogenin was uniquely expressed in late nauplius stage, suggesting it may be an energy source for the subsequent non-feeding cyprid stage; 2) the locations of mannose receptors suggested they may be involved in the sensory system of cyprids; 3) 20 kDa-cement protein homologues were expressed in the cyprid cement gland and probably function during attachment; and 4) receptor tyrosine kinases were expressed higher in cyprid stage and may be involved in signal perception during larval settlement. Our results provide not only the basis of several new hypotheses about gene functions during larval settlement, but also the availability of this large transcriptome dataset in B. amphitrite for further exploration of larval settlement and developmental pathways in this important marine species.
    Description: This work was supported by grants (N-HKUST602/09 and AoE/P-04/04-II) from the Research Grants Council of the Hong Kong Special Administrative Region and an award (SA-C0040/UK-C0016) made by KAUST to P-Y Qian.
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  • 8
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    On the role of eddies and surface forcing in the heat transport and overturning circulation in marginal seas (2011)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2011. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 24 (2011): 4844–4858, doi:10.1175/2011JCLI4130.1.
    Description: The factors that determine the heat transport and overturning circulation in marginal seas subject to wind forcing and heat loss to the atmosphere are explored using a combination of a high-resolution ocean circulation model and a simple conceptual model. The study is motivated by the exchange between the subpolar North Atlantic Ocean and the Nordic Seas, a region that is of central importance to the oceanic thermohaline circulation. It is shown that mesoscale eddies formed in the marginal sea play a major role in determining the mean meridional heat transport and meridional overturning circulation across the sill. The balance between the oceanic eddy heat flux and atmospheric cooling, as characterized by a nondimensional number, is shown to be the primary factor in determining the properties of the exchange. Results from a series of eddy-resolving primitive equation model calculations for the meridional heat transport, overturning circulation, density of convective waters, and density of exported waters compare well with predictions from the conceptual model over a wide range of parameter space. Scaling and model results indicate that wind effects are small and the mean exchange is primarily buoyancy forced. These results imply that one must accurately resolve or parameterize eddy fluxes in order to properly represent the mean exchange between the North Atlantic and the Nordic Seas, and thus between the Nordic Seas and the atmosphere, in climate models.
    Description: This study was supported by the National Science Foundation under Grants OCE-0726339 and OCE-0850416.
    Keywords: Eddies ; Forcing ; Meridional overturning circulation ; Transport ; North Atlantic Ocean ; Seas/gulfs/bays
    Repository Name: Woods Hole Open Access Server
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  • 9
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    Ocean preconditioning of Cyclone Nargis in the Bay of Bengal : interaction between Rossby waves, surface fresh waters, and sea surface temperatures (2011)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2011. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 41 (2011): 1741–1755, doi:10.1175/2011JPO4437.1.
    Description: An in-depth data analysis was conducted to understand the occurrence of a strong sea surface temperature (SST) front in the central Bay of Bengal before the formation of Cyclone Nargis in April 2008. Nargis changed its course after encountering the front and tracked along the front until making landfall. One unique feature of this SST front was its coupling with high sea surface height anomalies (SSHAs), which is unusual for a basin where SST is normally uncorrelated with SSHA. The high SSHAs were associated with downwelling Rossby waves, and the interaction between downwelling and surface fresh waters was a key mechanism to account for the observed SST–SSHA coupling. The near-surface salinity field in the bay is characterized by strong stratification and a pronounced horizontal gradient, with low salinity in the northeast. During the passage of downwelling Rossby waves, freshening of the surface layer was observed when surface velocities were southwestward. Horizontal convergence of freshwater associated with downwelling Rossby waves increased the buoyancy of the upper layer and caused the mixed layer to shoal to within a few meters of the surface. Surface heating trapped in the thin mixed layer caused the fresh layer to warm, whereas the increase in buoyancy from low-salinity waters enhanced the high SSHA associated with Rossby waves. Thus, high SST coincided with high SSHA. The dominant role of salinity in controlling high SSHA suggests that caution should be exercised when computing hurricane heat potential in the bay from SSHA. This situation is different from most tropical oceans, where temperature has the dominant effect on SSHA.
    Description: This work was supported by the NOAA/Office of Climate Observation (OCO) program.
    Keywords: Rossby waves ; Sea surface temperature ; Sea/ocean surface
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  • 10
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    Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata (2011)
    Public Library of Science
    Details
    Publication Date: 2022-05-25
    Description: © The Authors, 2011. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 6 (2011): e16018, doi:10.1371/journal.pone.0016018.
    Description: The shrimp Rimicaris exoculata dominates the faunal biomass at many deep-sea hydrothermal vent sites at the Mid-Atlantic Ridge. In its enlarged gill chamber it harbors a specialized epibiotic bacterial community for which a nutritional role has been proposed. We analyzed specimens from the Snake Pit hydrothermal vent field on the Mid-Atlantic Ridge by complementing a 16S rRNA gene survey with the analysis of genes involved in carbon, sulfur and hydrogen metabolism. In addition to Epsilon- and Gammaproteobacteria, the epibiotic community unexpectedly also consists of Deltaproteobacteria of a single phylotype, closely related to the genus Desulfocapsa. The association of these phylogenetic groups with the shrimp was confirmed by fluorescence in situ hybridization. Based on functional gene analyses, we hypothesize that the Gamma- and Epsilonproteobacteria are capable of autotrophic growth by oxidizing reduced sulfur compounds, and that the Deltaproteobacteria are also involved in sulfur metabolism. In addition, the detection of proteobacterial hydrogenases indicates the potential for hydrogen oxidation in these communities. Interestingly, the frequency of these phylotypes in 16S rRNA gene clone libraries from the mouthparts differ from that of the inner lining of the gill chamber, indicating potential functional compartmentalization. Our data show the specific association of autotrophic bacteria with Rimicaris exoculata from the Snake Pit hydrothermal vent field, and suggest that autotrophic carbon fixation is contributing to the productivity of the epibiotic community with the reductive tricarboxylic acid cycle as one important carbon fixation pathway. This has not been considered in previous studies of carbon fixation and stable carbon isotope composition of the shrimp and its epibionts. Furthermore, the co-occurrence of sulfur-oxidizing and sulfur-reducing epibionts raises the possibility that both may be involved in the syntrophic exchange of sulfur compounds, which could increase the overall efficiency of this epibiotic community.
    Description: Funding was provided through NSF grant OCE-0452333 and the Alfried Krupp Wissenschaftskolleg Greifswald, Germany (SMS), the Max Planck Society, the German Research Foundation (DFG) Cluster of Excellence at Marum, and MOMARnet (ND, JMP), and IFM-GEOMAR (MH, JFI).
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