ALBERT

Description: In 1842, Darwin identified three types of reefs: fringing reefs, which are directly attached to volcanic islands; barrier reefs, which are separated from volcanic islands by lagoons; and ring reefs, which enclose only a lagoon and are defined as atolls. Moreover, he linked these reef types through an evolutionary model in which an atoll is the logical end point of a subsiding volcanic edifice, as he was unaware of Quaternary glaciations. As an alternative, starting in the 1930s, several authors proposed the antecedent karst model; in this model, atolls formed as a direct interaction between subsidence and karst dissolution that occurred preferentially in the bank interiors rather than on their margins through exposure during glacial lowstands of sea level. Atolls then developed during deglacial reflooding of the glacial karstic morphologies by preferential stacked coral-reef growth along their margins. Here, a comprehensive new model is proposed, based on the antecedent karst model and well-established sea-level fluctuations during the last 5 million years, by demonstrating that most modern atolls from the Maldives Archipelago and from the tropical Pacific and southwest Indian Oceans are rooted on top of late Pliocene flat-topped banks. The volcanic basement, therefore, has had no influence on the late Quaternary development of these flat-topped banks into modern atolls. During the multiple glacial sea-level lowstands that intensified throughout the Quaternary, the tops of these banks were karstified; then, during each of the five mid-to-late Brunhes deglaciations, coral reoccupied their raised margins and grew vertically, keeping up with sea-level rise and creating the modern atolls. Expected final online publication date for the Annual Review of Marine Science, Volume 13 is January 4, 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

Description: The water mass transformation (WMT) framework weaves together circulation, thermodynamics, and biogeochemistry into a description of the ocean that complements traditional Eulerian and Lagrangian methods. In so doing, a WMT analysis renders novel insights and predictive capabilities for studies of ocean physics and biogeochemistry. In this review, we describe fundamentals of the WMT framework and illustrate its practical analysis capabilities. We show how it provides a robust methodology to characterize and quantify the impact of physical processes on buoyancy and other thermodynamic fields. We also detail how to extend WMT to insightful analysis of biogeochemical cycles.

Description: The CARIACO (Carbon Retention in a Colored Ocean) Ocean Time-Series Program station, located at 10.50°N, 64.66°W, observed biogeochemical and ecological processes in the Cariaco Basin of the southwestern Caribbean Sea from November 1995 to January 2017. The program completed 232 monthly core cruises, 40 sediment trap deployment cruises, and 40 microbiogeochemical process cruises. Upwelling along the southern Caribbean Sea occurs from approximately November to August. High biological productivity (320–628 g C m−2y−1) leads to large vertical fluxes of particulate organic matter, but only approximately 9–10 g C m−2y−1fall to the bottom sediments (∼1–3% of primary production). A diverse community of heterotrophic and chemoautotrophic microorganisms, viruses, and protozoa thrives within the oxic–anoxic interface. A decrease in upwelling intensity from approximately 2003 to 2013 and the simultaneous overfishing of sardines in the region led to diminished phytoplankton bloom intensities, increased phytoplankton diversity, and increased zooplankton densities. The deepest waters of the Cariaco Basin exhibited long-term positive trends in temperature, salinity, hydrogen sulfide, ammonia, phosphate, methane, and silica. Earthquakes and coastal flooding also resulted in the delivery of sediment to the seafloor. The program's legacy includes climate-quality data from suboxic and anoxic habitats and lasting relationships between international researchers.

Description: The use of unoccupied aircraft systems (UASs, also known as drones) in science is growing rapidly. Recent advances in microelectronics and battery technology have resulted in the rapid development of low-cost UASs that are transforming many industries. Drones are poised to revolutionize marine science and conservation, as they provide essentially on-demand remote sensing capabilities at low cost and with reduced human risk. A variety of multirotor, fixed-wing, and transitional UAS platforms are capable of carrying various optical and physical sampling payloads and are being employed in almost every subdiscipline of marine science and conservation. This article provides an overview of the UAS platforms and sensors used in marine science and conservation missions along with example physical, biological, and natural resource management applications and typical analytical workflows. It concludes with details on potential effects of UASs on marine wildlife and a look to the future of UASs in marine science and conservation.

Description: In this article, I use the Estimating the Circulation and Climate of the Ocean version 4 (ECCO4) reanalysis to estimate the residual meridional overturning circulation, zonally averaged, over the separate Atlantic and Indo-Pacific sectors. The abyssal component of this estimate differs quantitatively from previously published estimates that use comparable observations, indicating that this component is still undersampled. I also review recent conceptual models of the oceanic meridional overturning circulation and of the mid-depth and abyssal stratification. These theories show that dynamics in the Antarctic circumpolar region are essential in determining the deep and abyssal stratification. In addition, they show that a mid-depth cell consistent with observational estimates is powered by the wind stress in the Antarctic circumpolar region, while the abyssal cell relies on interior diapycnal mixing, which is bottom intensified.

Description: Archaea are ubiquitous and abundant members of the marine plankton. Once thought of as rare organisms found in exotic extremes of temperature, pressure, or salinity, archaea are now known in nearly every marine environment. Though frequently referred to collectively, the planktonic archaea actually comprise four major phylogenetic groups, each with its own distinct physiology and ecology. Only one group—the marine Thaumarchaeota—has cultivated representatives, making marine archaea an attractive focus point for the latest developments in cultivation-independent molecular methods. Here, we review the ecology, physiology, and biogeochemical impact of the four archaeal groups using recent insights from cultures and large-scale environmental sequencing studies. We highlight key gaps in our knowledge about the ecological roles of marine archaea in carbon flow and food web interactions. We emphasize the incredible uncultivated diversity within each of the four groups, suggesting there is much more to be done.

Description: Aquatic environments experiencing low-oxygen conditions have been described as hypoxic, suboxic, or anoxic zones; oxygen minimum zones; and, in the popular media, the misnomer “dead zones.” This review aims to elucidate important aspects underlying oxygen depletion in diverse coastal systems and provides a synthesis of general relationships between hypoxia and its controlling factors. After presenting a generic overview of the first-order processes, we review system-specific characteristics for selected estuaries where adjacent human settlements contribute to high nutrient loads, river-dominated shelves that receive large inputs of fresh water and anthropogenic nutrients, and upwelling regions where a supply of nutrient-rich, low-oxygen waters generates oxygen minimum zones without direct anthropogenic influence. We propose a nondimensional number that relates the hypoxia timescale and water residence time to guide the cross-system comparison. Our analysis reveals the basic principles underlying hypoxia generation in coastal systems and provides a framework for discussing future changes.

Description: Scientists have advocated for local interventions, such as creating marine protected areas and implementing fishery restrictions, as ways to mitigate local stressors to limit the effects of climate change on reef-building corals. However, in a literature review, we find little empirical support for the notion of managed resilience. We outline some reasons for why marine protected areas and the protection of herbivorous fish (especially parrotfish) have had little effect on coral resilience. One key explanation is that the impacts of local stressors (e.g., pollution and fishing) are often swamped by the much greater effect of ocean warming on corals. Another is the sheer complexity (including numerous context dependencies) of the five cascading links assumed by the managed-resilience hypothesis. If reefs cannot be saved by local actions alone, then it is time to face reef degradation head-on, by directly addressing anthropogenic climate change—the root cause of global coral decline.