ALBERT

Note: Contents Part I Introduction Population Genomics: Advancing Understanding of Nature / Gordon Luikart, Marty Kardos, Brian K. Hand, Om P. Rajora, Sally N. Aitken, and Paul A. Hohenlohe Part II Methods Genotyping and Sequencing Technologies in Population Genetics and Genomics / J. A. Holliday, E. M. Hallerman, and D. C. Haak Computational Tools for Population Genomics / Jarkko Salojärvi Population and Evolutionary Genetic Inferences in the Whole-Genome Era: Software Challenges / Alexandros Stamatakis Part III Concepts and Approaches Population Epigenomics: Advancing Understanding of Phenotypic Plasticity, Acclimation, Adaptation and Diseases / Ehren R. V. Moler, Abdulkadir Abakir, Maria Eleftheriou, Jeremy S. Johnson, Konstantin V. Krutovsky, Lara C. Lewis, Alexey Ruzov, Amy V. Whipple, and Om P. Rajora Landscape Genomics: Understanding Relationships Between Environmental Heterogeneity and Genomic Characteristics of Populations / Niko Balkenhol, Rachael Y. Dudaniec, Konstantin V. Krutovsky, Jeremy S. Johnson, David M. Cairns, Gernot Segelbacher, Kimberly A. Selkoe, Sophie von der Heyden, Ian J. Wang, Oliver Selmoni, and Stéphane Joost Paleogenomics: Genome-Scale Analysis of Ancient DNA and Population and Evolutionary Genomic Inferences / Tianying Lan and Charlotte Lindqvist Genome-Wide Association Studies and Heritability Estimation in the Functional Genomics Era / Dunia Pino Del Carpio, Roberto Lozano, Marnin D. Wolfe, and Jean-Luc Jannink Genomic Selection / Elisabeth Jonas, Freddy Fikse, Lars Rönnegård, and Elena Flavia Mouresan Part IV Population, Evolutionary and Ecological Genetics Applications and Inferences Population Genomics Provides Key Insights in Ecology and Evolution / Paul A. Hohenlohe, Brian K. Hand, Kimberly R. Andrews, and Gordon Luikart Inferring Demographic History Using Genomic Data / Jordi Salmona, Rasmus Heller, Martin Lascoux, and Aaron Shafer Advancing Biogeography Through Population Genomics / Jeremy S. Johnson, Konstantin V. Krutovsky, Om P. Rajora, Keith D. Gaddis, and David M. Cairns Adaptation Without Boundaries: Population Genomics in Marine Systems / Marjorie F. Oleksiak Population Genomics of Speciation and Admixture / Nicola J. Nadeau and Takeshi Kawakami Population Genomics of Colonization and Invasion / Shana R. Welles and Katrina M. Dlugosch Population Genomics of Crop Domestication: Current State and Perspectives / Philippe Cubry and Yves Vigouroux Population Genomics of Animal Domestication and Breed Development / Samantha Wilkinson and Pamela Wiener Population Genomics of Domestication and Breed Development in Canines in the Context of Cognitive, Social, Behavioral, and Disease Traits / Kristopher J. L. Irizarry and Elton J. R. Vasconcelos Index

Note: Contents I Plants as Unique Organisms; History and Tools of Plant Anatomy 1 The Nature of Plants 1.1 Plants Have Multiple Pigments with Multiple Functions 1.2 Plants Use Water, and the Properties of Water, in Unique Ways 1.3 Plants Use Anabolic Metabolism to Manufacture Every Molecule Needed for Growth and Produce Virtually No Waste 1.4 Cell Walls Are Nonliving Matrices Outside the Plant Cell Membrane that House and/or Perform a Variety of Functions 1.5 The Plant Life Cycle Alternates Between a Haploid Gametophyte Stage and a Diploid Sporophyte Stage 1.6 Meristematic Activity Continues Throughout the Life of a Plant 1.7 Fruits Disperse Seeds Through Space: Dormancy Disperses Seeds Through Time 1.8 Earth’s History Is Divided into Four Major Time Periods 1.8.1 The Precambrian: 4550 to 542 mya 1.8.2 The Paleozoic Era: 542 to 251 mya 1.8.3 The Mesozoic Era: 251–66 mya 1.8.4 The Cenozoic Era: 66 mya to Present 1.9 Life on Earth Has Experienced Five Mass Extinctions: A Sixth Is in Progress 1.10 Many Plants and Animals Have Coevolved 1.11 The Plant Body Consists of Four Organs 1.11.1 Roots 1.11.2 Stems 1.11.3 Leaves 1.11.4 Flowers and Fruit 1.12 Plant Organs Are Initially Made of Three Tissues 1.13 “Plant” Can Be Broadly Defined 1.14 Bryophytes Lack Vasculature and Produce Spores 1.15 Ferns and Fern Allies Are Seedless Tracheophytes 1.16 Gymnosperms Are Seed-Producing Tracheophytes that Lack Flowers and Fruit 1.17 Monocots and Eudicots Are the Two Largest Groups of Angiosperms 1.18 Understanding Plant Structure Requires a Sense of Scale 1.19 “Primary” and “Secondary” Are Important Concepts in Plant Anatomy 1.19.1 Primary Versus Secondary Growth and Meristems 1.19.2 Primary Versus Secondary Xylem and Phloem 1.19.3 Primary Versus Secondary Cell Walls 1.20 Chapter Review References and Additional Readings 2 Microscopy and Imaging 2.1 Robert Hooke, 1635–1703, Described a Cell as the Basic Unit of Life by Studying the Bark of the Cork Oak Tree, Quercus suber 2.2 Antoni Van Leeuwenhoek, 1632–1723, Was the First Scientist to Observe Microorganisms 2.3 Nehemiah Grew, 1641–1712, Was the Father of Plant Anatomy 2.4 Robert Brown, 1773–1858, Discovered the Nucleus of the Cell by Studying Orchid Petals 2.5 Katherine Esau, 1898–1997, Advanced the Field of Plant Anatomy with Her Influential Textbooks 2.6 Light Microscopy: The Most Useful Tool of the Plant Anatomist 2.7 The Compound Light Microscope Uses Multiple Lenses to Form and Capture Images 2.8 The Resolving Power of a Lens Places Limits on Resolution and Magnification 2.9 The Confocal Microscope Allows for Sharper Detail, Computer Control, and 3-D Imaging with a Modified Compound Microscope 2.10 Electron Microscopy Allows a View into the World of Cellular Ultrastructure 2.11 The Transmission Electron Microscope Reveals Internal Cellular Detail 2.12 The Scanning Electron Microscope Resolves Surface Detail 2.13 Different Microscopies Produce Different Images of the Same Specimen 2.14 Chapter Review References and Additional Readings II Cellular Plant Anatomy 3 Plant Cell Structure and Ultrastructure 3.1 Plant Cells Are Complex Structures 3.2 Plant Cells Synthesize an External Wall and Contain a Variety of Internal Compartments 3.3 Cells and Cell Organelles Are Typically Bound by Lipid Bilayer Membranes 3.4 Vacuoles Play a Role in Water and Ion Balance 3.5 Plastids Are a Diverse Family of Anabolic Organelles 3.5.1 Proplastid 3.5.2 Etioplast 3.5.3 Elaioplast 3.5.4 Amyloplast 3.5.5 Chromoplast 3.5.6 Gerontoplast 3.5.7 Chloroplast 3.5.8 Chloroplast Functions 3.5.9 The Dimorphic Chloroplasts of C 4 Photosynthesis 3.5.10 Guard Cell Chloroplasts 3.5.11 Sun Versus Shade Chloroplasts 3.6 All Plastids Are Developmentally Related 3.7 Mitochondria Synthesize ATP and Small Carbon Skeletons 3.8 Microbodies Are the Site of Specific Biochemical Pathways 3.9 The Endoplasmic Reticulum Synthesizes Proteins and Some Lipids 3.10 The Golgi Apparatus Processes and Packages Polysaccharides and Proteins for Secretion 3.11 The Nucleus Houses the Cell’s Genetic Material and Participates in Ribosome Synthesis 3.12 The Cytoskeleton Organizes the Cell and Helps Traffic Organelles 3.13 Chapter Review References and Additional Readings 4 Mitosis and Meristems 4.1 The Plant Cell Cycle Includes Interphase, Mitosis, and Cytokinesis 4.2 A Pre-prophase Microtubule Band Precedes Mitosis and Defines the Plane of Cell Division 4.3 Mitosis May Be Divided into Distinct, but Continuous, Stages 4.4 Cytokinesis Begins with Initiation of the Cell Plate and Grows by the Deposition of Callose 4.5 Microtubules Play a Critical Role in Mitosis and Cytokinesis 4.6 Apical Meristems Are the Sites of Primary Growth 4.7 The Shoot Apical Meristem Is the Site of Lateral Organ Initiation 4.8 Axillary Buds Arise De Novo in the Developing Leaf Axis 4.9 Tunica-Corpus Organization Describes Shoot Apical Meristem Growth in Many Eudicots 4.10 Gymnosperms Do Not Possess a Tunica-Corpus 4.11 The Root Apical Meristem Provides the Primary Growth of Roots 4.12 Lateral Roots Originate from Inside the Pericycle, Not from the Root Apical Meristem 4.13 Intercalary Meristems Contribute to Stem and Leaf Growth in Monocots 4.14 Many Lower Vascular Plants Have a Single Initial Cell in the Shoot and Root Apical Meristems 4.15 Lateral Meristems Are the Site of Secondary Growth in Eudicots 4.16 Chapter Review References and Additional Readings 5 Cell Walls 5.1 Transparent Plant Cell Walls Contain Cellulose and Are Synthesized to the Exterior of the Protoplast 5.2 Primary Cell Walls Are a Structural Matrix of Cellulose and Several Other Components 5.3 Plasmodesmata Connect Adjacent Cells Via Holes in the Primary Cell Wall 5.4 Secondary Cell Walls Are Rigid, Thick, and Lignified 5.5 Pits Are Holes in the Secondary Cell Wall 5.6 Transfer Cells Have Elaborated Primary Cell Walls for High Rates of Transport 5.7 Chapter Review References and Additional Readings 6 Parenchyma, Collenchyma, and Sclerenchyma 6.1 Parenchyma Cells Are the Most Common Plant Cell Type 6.2 Parenchyma Cells May Exhibit Totipotency 6.3 Collenchyma Cells Are Used for Support and Are the Least Common Cell Type 6.4 Birefringence Is a Common Phenomenon in Collenchyma Walls 6.5 Sclerenchyma Cells Provide Support, Protection, and Long-Distance Water Transport 6.6 Fibers Impart Support and Protection 6.7 Sclereids Are Reduced Sclerenchyma Cells That Occur Singly or in Clumps 6.8 Xylem Vessel Elements Are Water-Conducting Sclerenchyma 6.9 Chapter Review References and Additional Readings III Vascular Tissues 7 Xylem 7.1 Xylem Is a Complex Tissue Containing Multiple Cell Types, Each with a Specific Structure and Function 7.2 The Primary Functions of Xylem Are Water Conduction, Mineral Transport, and Support 7.3 Tracheids Are Imperforate Tracheary Elements and the Sole Water Conductors in Gymnosperms 7.4 Angiosperm Tracheids, Fiber Tracheids, and Libriform Fibers Represent a Continuum of Imperforate Tracheary Element Design and Function 7.5 Vessel Elements Are Perforate Cells and the Main Water Conductors in Angiosperms 7.6 Vessel Element Side Walls Are Patterned for Strength and Water Movement 7.7 Most Vessel Elements End in a Perforation Plate and Are Connected to Another Vessel Element 7.8 Xylem Parenchyma Are Living Cells Involved in Xylem Metabolism and Protection 7.9 Chapter Review References and Additional Readings 8 Phloem 8.1 Phloem Is a Complex Tissue Containing Multiple Cell Types, Each with a Specific Structure and Function 8.2 Phloem’s Main Function Is Photosynthate Translocation 8.3 Sieve Tube Elements Are Living Cells Responsible for Translocation 8.4 Companion Cells Support the Sieve Tube Element and Are Involved in Phloem Loading and Unloading in Angiosperms 8.5 Phloem Parenchyma Cells Are Involved in Radial Translocation, Xylem/Phloem Coordination, and Storage 8.6 Phloem Fibers Protect the Delicate Sieve Tubes 8.7 Secondary Phloem Typically Only Functions for One Growing Season 8.8 Gymnosperm Phloem Is Simpler Than An

Note: Contents 1 Introduction 2 Time and Geological Periods 3 Rocks and the Geological Record 4 The Age of the Rocks 5 Plate Tectonics, the Unifying Theory 6 Tectonics Units of Europe 6.1 Ancestral Europe 6.2 Paleo-Europe 6.3 Meso-Europe 6.4 Neo-Europe 7 Overview of the Plate Tectonic History of Europe 8 The Dynamic Earth, Earthquakes in Germany 9 Early Geological Evolution of Germany 9.1 The Pre-variscan Basement 9.2 Occurrences of Proterozoic and Early Paleozoic Units 9.2.1 Harz Mountains 9.2.2 Rheinisches Schiefergebirge 9.2.3 Lusatia 9.2.4 Elbe Zone 9.2.5 Erzgebirge 9.2.6 Schwarzburg Anticlinorium, Vesser Zone 9.2.7 Bohemian Massif 9.2.8 Black Forest 10 Late Paleozoic of Germany 10.1 The Variscan Orogeny 10.1.1 Rhenohercynian Zone 10.1.2 Saxothuringian Zone 10.1.3 Moldanubian Zone 10.2 Development of the Variscan Orogeny Through Time 10.2.1 Devonian 10.2.2 Carboniferous 10.3 The Variscides in Germany 10.3.1 Regional Geology of the Rhenohercynian 10.3.2 Northern Phyllite Zone 10.3.3 Regional Geology of the Saxothuringian 10.3.4 Saxothuringian (excluding the Mid-German Crystalline Zone) 10.3.5 Regional Geology of the Moldanubian 11 Permian and Mesozoic Geology of Germany 11.1 Post-Variscan History 11.2 Permian 11.2.1 Rotliegend 11.2.2 Zechstein 11.3 Permian/Triassic Boundary 11.4 Triassic 11.4.1 Buntsandstein (Bunter Sandstone) 11.4.2 Muschelkalk 11.4.3 Keuper 11.5 Triassic/Jurassic Boundary 11.6 Jurassic 11.6.1 Early Jurassic 11.6.2 Middle Jurassic 11.6.3 Late Jurassic 11.7 Cretaceous 11.7.1 Early Cretaceous 11.7.2 Late Cretaceous 11.8 Cretaceous/Tertiary Boundary 12 The Evolution of the Alps 12.1 Overview of the Tectonic Structure of the Alps 12.1.1 Helvetic 12.1.2 Penninic 12.1.3 Austroalpine and Southern Alpine Units 12.2 Development of the Alpine Region During the Permian 12.3 The Alpine Triassic 12.4 The Alpine Jurassic 12.5 The Alpine Region in the Cretaceous and Early Tertiary 12.6 The Tectonic Evolution of the Alps 13 Tertiary Basins 13.1 Tertiary Brown Coal Deposits 13.2 The Upper Rhine Graben 13.3 The Northern Alpine Foreland Basin—The Molasse 14 Tertiary and Quaternary Volcanism 14.1 Volcanism in the Eifel 14.2 Westerwald, Siebengebirge, Vogelsberg, Rhön, and Heldburger Gangschar 14.3 Small Chimneys in the Odenwald and the Messel Pit 14.4 Kaiserstuhl 14.5 Tuff Chimneys of Bad Urach, Hegau 14.6 Eger Graben Area, Fichtel Mountains, Vogtland, and Lusatia 15 Asteroid Craters 16 Germany During the Glacial Periods 16.1 Glacial and Interglacial Periods 16.2 Deposits and Erosion Forms of the Glacial Periods 16.3 The Baltic Sea—A Relic from the Last Glaciation Period Appendix References Index

Note: Contents Consistency and Uncertainty Analyses of Sediment Transport Monitoring in the Transboundary River: Case Study of Western Dvina (Russian Federation, Belarus and Latvia) / S. R. Chalov Global Change Impact on Ephemeral Streams Sediment Load in the Raya Graben, Northern Ethiopia / P. Billi, B. Demissie, J. Nyssen, A. Frankl, and M. Haile Longitudinal and Cross Profiles as Indicators of Morphodynamics of Small Drainage Basins (Case Study European Russia) / V. P. Bondarev Change of Erosive Activity in the Context of Change of the Climate / S. V. Budnik Numerical Modeling of Channel Deformation Taking into Account Sediment Fractions Distribution / A. I. Aleksyuk, V. V. Belikov, N. M. Borisova, and T. A. Fedorova Drivers of Sedimentary Fluxes Assessment in Alpine Catchments / V. O. Bazilova, S. R. Chalov, and A. S. Tsyplenkov Peculiarities of Ice Nucleation on Particles in Atmosphere and Soil / D. M. Frolov The Extreme Rainfall Characteristics and Terrace Greenhouse Erosion Control in Climate Change and Human Impact in Hilly and Gully Region of the Loess Plateau in China / J. E. Gao, Y. X. Zhang, X. H. Li, H. J. Li, Z. Gao, and M. J. Ji Integration of Landforms, Deposits and Paleosols Analysis for Reconstructing Holocene Debris Flow Activity in the Low Mountains of Kola Peninsula / E. V. Garankina, V. R. Belyaev, Y. R. Belyaev, A. L. Gurinov, M. M. Ivanov, N. V. Kuzmenkova, F. A. Romanenko, A. I. Rudinskaya, and E. D. Tulyakov Trees as Large-Scale Natural Phononic Crystals / Jian-Kun Huang, Yi-Fan Liu, and Ya-Guang Li Climate Change and Sediment Yield in Kamchatka, Far East of Russia / L. V. Kuksina Selenga River Runoff Projections in the XXI Century: ECOMAG-Based Simulation Results / T. D. Millionshchikova Postglacial Incision-Widening-Infill Cycles at the Borisoglebsk Upland: Correlations Between Interfluve Headwaters and Fluvial Network / Y. V. Shishkina, E. V. Garankina, V. R. Belyaev, P. V. Andreev, A. I. Bondar, V. I. Potapova, T. A. Verlova, and ILYA G. Shorkunov Geomorphometric and Geoinformation Approach to Meliorative Evaluation of the Territory / A. R. Suleymanov The Innovation Technology Based on Molecular Phylogeny of Bacillariophyceae for Water Quality Monitoring / A. E. Sverdrup and L. L. Frolova Water Balance Assessment Using Swat Model. Case Study on Russian Subcatchment of Western Dvina River / P. N. Terskii, A. A. Kuleshov, and S. R. Chalov Numerical Modeling of Channel Processes and Hydraulic Engineering Impact on the River Amur / E. Fingert, I. Krylenko, V. Belikov, P. Golovlyov, M. Samokhin, S. Borovkov, and A. Zavadskii Channel Processes Dynamics at Wet Subtropical Climate of Russian Black Sea Coast / Y. Kuznetsova, V. Golosov, and N. Ivanova Intra-storm Variability of Coefficient of Variation of Runoff and Soil Loss in Consecutive Storms at Experimental Plot Scale / M. Kiani-Harchegani, S. H. R. Sadeghi, and A. Ghahramani Study of Channel Changes in the Lena River Near Yakutsk Based on Long-Term Data, Satellite Images and Two-Dimensional Hydrodynamic Model / E. D. Kornilova, E. A. Morozova, I. N. Krylenko, E. A. Fingert, P. P. Golovlyov, A. S. Zavadsky, and V. V. Belikov A Probabilistic Approach to Interpret Long-Term Observations of Sediment Yield in Experimental Catchments in Southern Italy / P. Porto and G. Callegari Extreme Erosion Events and Climate Change / E. V. Promakhova, L. V. Kuksina, and V. N. Golosov The Emission of Carbon Dioxide from Soils Washed-Out and Buried by Accelerated Erosion in the Chernozem Belt of the European Russia / A. Sidorchuk Gully Erosion and Thermo-erosion Modelling for the Conditions of the Modern and the Late-Glacial Periglacial Climate / A. Sidorchuk

Note: Contents Part I Introduction 1 Machine Learning in Wildlife Biology: Algorithms, Data Issues and Availability, Workflows, Citizen Science, Code Sharing, Metadata and a Brief Historical Perspective / Grant R. W. Humphries and Falk Huettmann 2 Use of Machine Learning (ML) for Predicting and Analyzing Ecological and ‘Presence Only’ Data: An Overview of Applications and a Good Outlook / Falk Huettmann, Erica H. Craig, Keiko A. Herrick, Andrew P. Baltensperger, Grant R. W. Humphries, David J. Lieske, Katharine Miller, Timothy C. Mullet, Steffen Oppel, Cynthia Resendiz, Imme Rutzen, Moritz S. Schmid, Madan K. Suwal, and Brian D. Young 3 Boosting, Bagging and Ensembles in the Real World: An Overview, some Explanations and a Practical Synthesis for Holistic Global Wildlife Conservation Applications Based on Machine Learning with Decision Trees / Falk Huettmann Part II Predicting Patterns 4 From Data Mining with Machine Learning to Inference in Diverse and Highly Complex Data: Some Shared Experiences, Intellectual Reasoning and Analysis Steps for the Real World of Science Applications / Falk Huettmann 5 Ensembles of Ensembles: Combining the Predictions from Multiple Machine Learning Methods / David J. Lieske, Moritz S. Schmid, and Matthew Mahoney 6 Machine Learning for Macroscale Ecological Niche Modeling - a Multi-Model, Multi-Response Ensemble Technique for Tree Species Management Under Climate Change / Anantha M. Prasad 7 Mapping Aboveground Biomass of Trees Using Forest Inventory Data and Public Environmental Variables within the Alaskan Boreal Forest / Brian D. Young, John Yarie, David Verbyla, Falk Huettmann, and F. Stuart Chapin III Part III Data Exploration and Hypothesis Generation with Machine Learning 8 ‘Batteries’ in Machine Learning: A First Experimental Assessment of Inference for Siberian Crane Breeding Grounds in the Russian High Arctic Based on ‘Shaving’ 74 Predictors / Falk Huettmann, Chunrong Mi, and Yumin Guo 9 Landscape Applications of Machine Learning: Comparing Random Forests and Logistic Regression in Multi-Scale Optimized Predictive Modeling of American Marten Occurrence in Northern Idaho, USA / Samuel A. Cushman and Tzeidle N. Wasserman 10 Using Interactions among Species, Landscapes, and Climate to Inform Ecological Niche Models: A Case Study of American Marten (Martes americana) Distribution in Alaska / Andrew P. Baltensperger 11 Advanced Data Mining (Cloning) of Predicted Climate-Scapes and Their Variances Assessed with Machine Learning: An Example from Southern Alaska Shows Topographical Biases and Strong Differences / Falk Huettmann 12 Using TreeNet, a Machine Learning Approach to Better Understand Factors that Influence Elevated Blood Lead Levels in Wintering Golden Eagles in the Western United States / Erica H. Craig, Tim H. Craig, and Mark R. Fuller Part IV Novel Applications of Machine Learning Beyond Species Distribution Models 13 Breaking Away from ‘Traditional’ Uses of Machine Learning: A Case Study Linking Sooty Shearwaters (Ardenna griseus) and Upcoming Changes in the Southern Oscillation Index / Grant R. W. Humphries 14 Image Recognition in Wildlife Applications / Dawn R. Magness 15 Machine Learning Techniques for Quantifying Geographic Variation in Leach’s Storm-Petrel (Hydrobates leucorhous) Vocalizations / Grant R. W. Humphries, Rachel T. Buxton, and Ian L. Jones Part V Implementing Machine Learning for Resource Management 16 Machine Learning for ‘Strategic Conservation and Planning’: Patterns, Applications, Thoughts and Urgently Needed Global Progress for Sustainability / Falk Huettmann 17 How the Internet Can Know What You Want Before You Do: Web-Based Machine Learning Applications for Wildlife Management / Grant R. W. Humphries 18 Machine Learning and ‘The Cloud’ for Natural Resource Applications: Autonomous Online Robots Driving Sustainable Conservation Management Worldwide? / Grant R. W. Humphries and Falk Huettmann 19 Assessment of Potential Risks from Renewable Energy Development and Other Anthropogenic Factors to Wintering Golden Eagles in the Western United States / Erica H. Craig, Mark R. Fuller, Tim H. Craig, and Falk Huettmann Part VI Conclusions 20 A Perspective on the Future of Machine Learning: Moving Away from ‘Business as Usual’ and Towards a Holistic Approach of Global Conservation / Grant R. W. Humphries and Falk Huettmann Index

Note: Contents 1 Introduction: Limits to Adaptation / Johanna Nalau and Walter Leal Filho Part I Limits to Climate Change Adaptation in Asia 2 Strategies and Barriers to Adaptation of Hazard-Prone Rural Households in Bangladesh / G. M. Monirul Alam, Khorshed Alam, Shahbaz Mushtaq, Most Nilufa Khatun and Walter Leal Filho 3 Governance Limits to Adaptation in Cambodia’s Health Sector / Daniel Gilfillan 4 Land-Based Strategic Model by Integrating Diverse Policies for Climate Change Adaptation in Nepal / Adish Khezri, Arbind Man Tuladhar and Jaap Zevenbergen 5 Climate Change and Migration in Bangladesh: Empirically Derived Lessons and Opportunities for Policy Makers and Practitioners / Johannes Luetz Part II Limits to Climate Change Adaptation in Africa 6 Limits to Climate Change Adaptation in Zimbabwe: Insights, Experiences and Lessons / Nelson Chanza 7 Pastoralists Shifting Strategies and Perceptions of Risk: Post-crisis Recovery in Damergou, Niger / Karen Marie Greenough 8 Political Limits to Climate Change Adaptation Practices: Insights from the Johannesburg Case / Karen Hetz 9 Constraints and Limits to Climate Change Adaptation Efforts in Nigeria / Idowu O. Ologeh, Joshua B. Akarakiri and Francis A. Adesina 10 Adapting Agriculture to Climate Change: Suitability of Banana Crop Production to Future Climate Change Over Uganda / Geoffrey Sabiiti, Joseph Mwalichi Ininda, Laban Ayieko Ogallo, Jully Ouma, Guleid Artan, Charles Basalirwa, Franklin Opijah, Alex Nimusiima, Saul Daniel Ddumba, Jasper Batureine Mwesigwa, George Otieno and Jamiat Nanteza 11 Local Adaptation to Climate Extremes in Domboshawa: Opportunities and Limitations / Vincent Itai Tanyanyiwa and Rejoice Madobi Part III Limits to Climate Change Adaptation in Australia, North-America and Europe 12 The Limits of Imagination / Liese Coulter 13 Climate Change Adaptation in Coastal East Arctic Ecosystems: Complexity and Challenges of Monitoring and Evaluation / Moktar Lamari, Line Poulin-Larivière and Johann L. Jacob 14 Limits to Adaptation on Climate Change in Bosnia and Herzegovina: Insights and Experiences / Goran Trbic, Davorin Bajic, Vladimir Djurdjevic, Vladan Ducic, Raduska Cupac, Đorđe Markez, Goran Vukmir, Radoslav Dekić and Tatjana Popov Part IV Limits to Climate Change Adaptation in the Pacific Region 15 Climate Change Adaptation Limits in Small Island Developing States / Stacy-ann Robinson 16 Limits to Coastal Adaptation in Samoa: Insights and Experiences / Richard Crichton and Miguel Esteban 17 Limits to Capital Works Adaptation in the Coastal Zones and Islands: Lessons for the Pacific / Brendan Mackey and Daniel Ware 18 A ‘Cost Barrier’ Perspective to Adaptation on a Coral Triangle Initiative (CTI) and Mangrove Rehabilitation Projects (MRP) in Solomon Islands / Michael Otoara Ha’apio, Walter Leal Filho and Morgan Wairiu 19 Customary Land and Climate Change Induced Relocation: A Case Study of Vunidogoloa Village, Vanua Levu, Fiji / Dhrishna Charan, Manpreet Kaur and Priyatma Singh 20 Limits to Adapting to Climate Change Through Relocations in Papua-New Guinea and Fiji / Dalila Gharbaoui and Julia Blocher 21 Atoll Habitability Thresholds / Mark H. N. Stege 22 Conclusions: Overcoming the Limits to Adaptation / Walter Leal Filho and Johanna Nalau

Note: Contents Introduction / Aaron Micallef, Sebastian Krastel and Alessandra Savini Part I Data and Methods in Submarine Geomorphology Sidescan Sonar / Ingo Klaucke Multibeam Echosounders / John E. Hughes Clarke Reflection and Refraction Seismic Methods / Gareth J. Crutchley and Heidrun Kopp Quantitative Analyses of Morphological Data / Philippe Blondel Seafloor Sediment and Rock Sampling / Aggeliki Georgiopoulou ROVs and AUVs / Veerle A.I. Huvenne, Katleen Robert, Leigh Marsh, Claudio Lo Iacono, Tim Le Bas and Russell B. Wynn Part II Submarine Landforms and Processes Origin and Geomorphic Characteristics of Ocean Basins / Peter T. Harris and Miles Macmillan-Lawler Drivers of Seafloor Geomorphic Change / Angelo Camerlenghi Shallow Coastal Landforms / Fantina Madricardo and Federica Rizzetto Continental Shelf Landforms / Ruth Durán and Jorge Guillén Submarine Glacial Landforms / Christine L. Batchelor, Julian A. Dowdeswell and Dag Ottesen Submarine Landslides / Joshu Mountjoy and Aaron Micallef Submarine Canyons and Gullies / David Amblas, Silvia Ceramicola, Thomas P. Gerber, Miquel Canals, Francesco L. Chiocci, Julian A. Dowdeswell, Peter T. Harris, Veerle A.I. Huvenne, Steven Y.J. Lai, Galderic Lastras, Claudio Lo Iacono, Aaron Micallef, Joshu J. Mountjoy, Charles K. Paull, Pere Puig and Anna Sanchez-Vidal Submarine Fans and Their Channels, Levees, and Lobes / Mark E. Deptuck and Zoltán Sylvester Contourite Drifts and Associated Bedforms / Ibimina Esentia, Dorrik Stow and Zeinab Smillie Volcanic Islands and Seamounts / Daniele Casalbore Mid-ocean Ridges / Neil C. Mitchell Cold Seep Systems / Silvia Ceramicola, Stéphanie Dupré, Luis Somoza and John Woodside Abyssal Hills and Abyssal Plains / Marie-Helene Cormier and Heather Sloan Oceanic Trenches / Jacob Geersen, David Voelker and Jan H. Behrmann Cold-Water Carbonate Bioconstructions / Claudio Lo Iacono, Alessandra Savini and Daniela Basso Part III Applied Submarine Geomorphology Applied Geomorphology and Geohazard Assessment for Deepwater Development / Roger Moore, Geoff Davis and Oliver Dabson Seabed Mining / Anne Peukert, Sven Petersen, Jens Greinert and François Charlot Fishing Activities / Ferdinand K.J. Oberle, Pere Puig and Jacobo Martín National Programmes: Geomorphological Mapping at Multiple Scales for Multiple Purposes / Terje Thorsnes, Lilja R. Bjarnadóttir, Alexandra Jarna, Nicole Baeten, Gill Scott, Janine Guinan, Xavier Monteys, Dayton Dove, Sophie Green, Joana Gafeira and Alan Stevenson Part IV Conclusion Conclusion / Aaron Micallef, Sebastian Krastel and Alessandra Savini Erratum to: Submarine Geomorphology / Aaron Micallef, Sebastian Krastel and Alessandra Savini

Note: Contents Volume 1 Part I Natural Science Basics 1 Introduction into Physical Oceanography / Rebecca Hummels 2 Ecological Organization of the Sea / Birte Matthiessen, Franziska Julie Werner, and Matthias Paulsen 3 Marine Ecosystem Services / Markus Salomon and Henriette Dahms Part II Impacts of Sectoral Marine Activities 4 Impact of Fishing Activities on Marine Life / Gerd Kraus and Rabea Diekmann 5 Mariculture / Thomas A. Wilding, Kenneth D. Black, Steven Benjamins, and Iona Campbell 6 Shipping / Alan Simcock 7 Impacts of Coastal Developments on Ecosystems / Christian Winter 8 Offshore Oil and Gas Production and Transportation / Stanislav Patin 9 Exploitation of Offshore Wind Energy / Jens Lüdeke 10 Dredging for Navigation, for Environmental Cleanup, and for Sand/Aggregates / Craig Vogt, Eugene Peck, and Gregory Hartman 11 Environmental Risks of Deep-sea Mining / Philip P. E. Weaver, David S. M. Billett, and Cindy L. Van Dover 12 Dumped Chemical Weapons / Jacek Bełdowski 13 Marine Climate Engineering / David P. Keller Part III Impacts of Land-Based Activities 14 Agriculture / Oene Oenema, Qian Liu, and Jingmeng Wang 15 Land-Based Industries / Elisabeth Schmid 16 Land-Based Wastewater Management / Stephan Koester 17 Tourism / Alan Simcock Part IV Pollution from Diffuse Sources 18 Climate Change: Warming Impacts on Marine Biodiversity / Helmut Hillebrand, Thomas Brey, Julian Gutt, Wilhelm Hagen, Katja Metfies, Bettina Meyer, and Aleksandra Lewandowska 19 Ocean Acidification / Peter Thor and Sam Dupont 20 Pollution with Hazardous Substances / Katja Broeg and Norbert Theobald 21 Pollution with Radioactive Substances / Hartmut Nies 22 Eutrophication / Justus E. E. van Beusekom 23 Marine Litter / Stefanie Werner and Aleke Stöfen O’Brien 24 Input of Energy/Underwater Sound / Olaf Boebel, Elke Burkhardt, and Ilse van Opzeeland 25 Introduction of Non-indigenous Species / Ralph Kuhlenkamp and Britta Kind Volume 2 Part V Social Drivers, Developments, and Perspectives of Increasing Ocean Uses 26 A Short History of the Use of Seas and Oceans / Sunhild Kleingärtner 27 Factors Behind Increasing Ocean Use: The IPAT Equation and the Marine Environment / Troels J. Hegland Part VI General Aspects of Management and Governance of Human Activities 28 Challenges and Foundations of Sustainable Ocean Governance / Till Markus 29 Institutional Framework for Marine Environmental Governance / Pradeep Singh 30 International Principles of Marine Environmental Protection / Gerd Winter 31 Overview of Management Strategies and Instruments / Carolin Kieß 32 Future Prospects of Marine Environmental Governance / Pradeep Singh and Aline Jaeckel Part VII Traditional Marine Management Topics 33 The International Legal Framework for Conservation and Management of Fisheries and Marine Mammals / Andrew Serdy 34 Aqua- and Mariculture Management: A Holistic Perspective on Best Practices / Marc H. Taylor and Lotta C. Kluger 35 Offshore Oil and Gas Exploitation / Henning Jessen 36 Sustainable Shipping / Ciarán McCarthy and Bénédicte Sage-Fuller 37 Management of Hazardous Substances in the Marine Environment / Mikael Karlsson and Michael Gilek 38 Origin and Management of Radioactive Substances in the Marine Environment / Hartmut Nies 39 Waste/Litter and Sewage Management / Aleke Stöfen-O’Brien and Stefanie Werner 40 Coastal and Ocean Tourism / Stefan Gössling, C. Michael Hall, and Daniel Scott Part VIII Emerging Management Topics 41 The Greening of Ports / Bénédicte Sage-Fuller 42 Offshore Windfarms / Greg Severinsen 43 Wave and Tidal Energy / Kate Johnson and Sandy Kerr 44 Deep-Seabed Mining / Philomene Verlaan 45 Marine Biodiversity: Opportunities for Global Governance and Management Coherence / Daniela Diz 46 Marine Protected Areas: Global Framework, Regional MPA Networks and a National Example / Henning von Nordheim 47 Marine Environmental Protection and Climate Change / Birgit Peters 48 Management of Non-indigenous Species and Invasive Alien Species / Wolfgang Köck and Bjørn-Oliver Magsig 49 Integrating Sectoral Ocean Policies / Markus Salomon and Miriam Dross 50 Marine Scientific Research / Anna-Maria Hubert 51 An Emerging Environmental Issue: Marine Discharge of Mine Tailings / Craig Vogt and Jens Skei 52 Managing and Regulating Underwater Noise Pollution / Till Markus and Pedro Pablo Silva Sánchez 53 Marine Geo-Engineering / Harald Ginzky 54 Marine Spatial Planning / Mathias Schubert

Note: Contents Part I Personal Reminiscences Honorary Note. Evgeny Georgievich Morozov: A Life at Sea as a Devoted Ocean Observer / Manuel G. Velarde, Roman Yu. Tarakanov and Alexey V. Marchenko Gallery: An Ocean Scientist and His Life at Sea / Manuel G. Velarde, Roman Yu. Tarakanov and Alexey V. Marchenko New Steps of the Modern Oceanography: Reminiscences of My Work with Evgeny Georgievich Morozov / Victor G. Neiman Fifty Years of Collaboration with Evgeny Georgievich Morozov / Boris N. Filyushkin Part II Scientific Contributions: Internal and Surface Waves Internal Undular Bores in the Coastal Ocean / Roger Grimshaw and Chunxin Yuan Calculating FRAM’s Dead Water / John Grue Internal Solitary Waves in a Layered Weakly Stratified Flow / Nikolay Makarenko, Janna Maltseva, Roman Tarakanov and Kseniya Ivanova Surface Manifestations of Internal Waves Induced by a Subsurface Buoyant Jet (Experiment and Theory) / Valerii G. Bondur, Yuliya I. Troitskaya, Ekaterina V. Ezhova, Vasiliy I. Kazakov, Alexandr A. Kandaurov, Daniil A. Sergeev and Irina A. Soustova Large Internal Solitary Waves in Shallow Waters / Valery Liapidevskii and Nikolay Gavrilov Internal Gravity Waves in Horizontally Inhomogeneous Ocean / Vitaly V. Bulatov and Yury V. Vladimirov High-Resolution Observations of Internal Wave Turbulence in the Deep Ocean / Hans van Haren Deep-Ocean Tides in the South-West Indian Ocean: Comparing Deep-Sea Pressure to Satellite Data / Leo R. M. Maas, Borja Aguiar-González and Leandro Ponsoni Internal Tides West of the Iberian Peninsula / Eugene G. Morozov and Manuel G. Velarde Asymmetric Baroclinic Response to Tidal Forcing Along the Main Sill of the Strait of Gibraltar Inferred from Mooring Observations / Jesús García-Lafuente, Simone Sammartino, José C. Sánchez-Garrido and Cristina Naranjo Mode 2 Internal Waves in the Ocean: Evidences from Observations / Andrey N. Serebryany Abyssal Mixing in the Laboratory / T. Dauxois, E. Ermanyuk, C. Brouzet, S. Joubaud and I. Sibgatullin Rogue Waves in the Ocean, the Role of Modulational Instability, and Abrupt Changes of Environmental Conditions that Can Provoke Non Equilibrium Wave Dynamics / Karsten Trulsen Simulation of Standing and Propagating Sea Waves with Three-Dimensional ARMA Model / Ivan Gankevich and Alexander Degtyarev Perturbation Theory for the Compound Soliton of the Gardner’s Equation; Their Interaction and Evolution in a Media with Variable Parameters / Irina A. Soustova, Konstantin A. Gorshkov, Alexey V. Ermoshkin, Lev A. Ostrovsky and Yuliya I. Troitskaya Part III Scientific Contributions: Ocean Circulation Geostrophic Adjustment Beyond the Traditional Approximation / Gregory M. Reznik Evolution of an Intrathermocline Lens over the Lofoten Basin / Boris N. Filyushkin, Mikhail A. Sokolovskiy and Konstantin V. Lebedev The Global Atmosphere Oscillations in the Context of the Recent Climate Change / Victor G. Neiman, Vladimir I. Byshev, Yury A. Romanov and Ilya V. Serykh Influence of the Current Field Non-stationarity and the Non-simultaneity of Hydrographic Measurements on ADCP-based Transport Estimates / R. Yu. Tarakanov Satellite Remote Sensing of Submesoscale Eddies in the Russian Seas / Andrey G. Kostianoy, Anna I. Ginzburg, Olga Yu. Lavrova and Marina I. Mityagina Ship-Based Monitoring of the Northern North Atlantic Ocean by the Shirshov Institute of Oceanology. The Main Results / Artem Sarafanov, Anastasia Falina, Alexey Sokov, Vyacheslav Zapotylko and Sergey Gladyshev Thermohaline Structure and Salt Fingering in the Lomonosov Equatorial Undercurrent as Observed in April 2017 / Tatiana A. Demidova Numerical Realization of Hybrid Data Assimilation Algorithm in Ensemble Experiments with the MPIESM Coupled Model / Konstantin P. Belyaev, Ingo Kirchner, Andrey A. Kuleshov and Natalia P. Tuchkova Sea of Azov Waters in the Black Sea: Do They Enhance Wind-Driven Flows on the Shelf? / Peter O. Zavialov, Alexander S. Izhitskiy and Roman O. Sedakov Bottom Water Flows in the Vema Channel and over the Santos Plateau Based on the Field and Numerical Experiments / 475 Dmitry I. Frey, Vladimir V. Fomin, Roman Yu. Tarakanov, Nikolay A. Diansky and Nikolay I. Makarenko Modeling Study of the Antarctic Circumpolar Current Variability Based on Argo Data / Konstantin V. Lebedev Tareev Equatorial Undercurrent in the Indian Ocean / Albert K. Ambrosimov, Dmitry I. Frey and Sergey M. Shapovalov The Bering Sea Regional Data Assimilation System: From Climate Variability to Short Term Hindcasting / Gleb G. Panteleev, Max Yaremchuk, Vladimir Luchin and Oceana Francis Monitoring Strong Tidal Currents in Straits and Nearshore Regions / Alexei Sentchev, Max Yaremchuk and Maxime Thiébaut Part IV Scientific Contributions: Arctic Oceanography Analytical Solutions Describing Zonal and Circular Wind Drift of Sea Ice with Elastic-Plastic Rheology / Aleksey Marchenko Arctic Ocean Modeling: The Consistent Physics on the Path to the High Spatial Resolution / Nikolay G. Iakovlev Numerical Modeling of Internal Wave Generation at High Latitudes / Oxana E. Kurkina, Tatiana G. Talipova, Efim N. Pelinovsky and Andrey A. Kurkin Internal Wave Frequency Spectrum in the Amundsen Basin of the Arctic Ocean Inferred from Ice Tethered CTD Instruments / Sergey V. Pisarev Experimental Studies of Sea and Model Ice Fracture Mechanics / Marina Karulina, Alexey Marchenko, Alexandr Sakharov, Evgeny Karulin and Peter Chistyakov Seasonal Freezing of a Subwater Ground Layer at the Laptev Sea Shelf / Peter V. Bogorodskii, Andrey V. Pnyushkov and Vasilii Yu. Kustov