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  • 1
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982) 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 2
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: An improved isoelectric focusing (IEF) technique has been developed and used to detect the erythrocyte galactose-1-phosphate uridyl transferase isoenzymes. The normal enzyme was resolved by IEF in four bands with isoelectric points (pI) between 5.80 and 6.08. Numerous samples, classified according to electrophoresis as Duarte or Los Angeles homozygotes, showed the same IEF pattern composed of four bands with pI's between 5.60 and 5.90. The Duarte-normal and Los Angelesnormal heterozygotes gave an IEF pattern of 4-5 bands (pI 5.60-6.08), with relative intensities that varied according to their activity.
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  • 3
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 65-75 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A natural pH gradient with a pH range of 3-10 was generated from a mixture of 47 buffers utilizing a polyacrylamide gel slab format. The gradient is stable for at least 18 h at 100 V/cm of gel, with the attainment of the steady state at 1 h and of isoelectric protein positions within 2.5 h. Gels containing buffer constituents at a final concentration of 10-20 mM exhibit a conductivity which is approximately one order of magnitude less than that exhibited by any synthetic carrier ampholyte mixture (SCAM), thereby permitting a high degree of resolution in analytic applications. Excessive Joule heating and artefactual protein-protein interaction, both potential drawbacks to electrofocusing at lower ionic strengths, were not observed in this study. The pH gradient generated by the buffer mixture makes possible for the first time electrofocusing of proteins under constant conditions in longitudinal studies, independently of the source and batch of carrier constituents. Furthermore, this system completely circumvents the physical, chemical and biologic problems frequently encountered with SCAMs.
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  • 4
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Bacteriophage T4, bacteriophage T4 without its tail fibers, and bacteriophage P22 without its tail have been subjected to electrophoresis in agarose gels; electrophoretic mobility (μ) of these particles as a function of the concentration of agarose (A) has been determined using preparations of agarose with different amounts of electro-osmosis. When μ was extrapolated to an A of 0 (μo), it was found that a term, μE, constant for each preparation of agarose must be added to μo to correct for electro-osmotic flow. A relationship between μE and a manufacturer-determined coefficient of electro-osmosis has been empirically derived. Corrected μo's are in agreement with data obtained by solid support-free electrophoresis.
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  • 5
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 117-117 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 6
    Electronic Resource
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 118-119 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 7
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982) 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 8
    Electronic Resource
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 172-174 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The fluorescent dye, Hoechst Dye No. 33258, was found to be of excellent quality for staining of not only DNA, as reported in the literature, but also of RNA species after separation in polyacrylamide micro gels. The staining procedure is simple and very sensitive. There are no problems with background staining and under certain conditions the nucleotide-dye complex is stable for a long time. The fluorescence intensity is linear to the amount of nucleic acid bound by the dye within certain limits.
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  • 9
    Electronic Resource
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 176-176 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 10
    Electronic Resource
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 174-175 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: We describe a rapid method whereby isolated chloroplasts from Euglena gracilis can be separated in a Ficoll gradient according to their surface pK's by isoelectric focusing in one hour or less. The linear Ficoll gradient is made isotonic over the whole separation distance by addition of sucrose. No released proteins of the isolated chloroplasts are detectable after isoelectric focusing. Modifications of the chloroplast envelope during the cell cycle of Euglena gracilis are evident by alterations of their isoelectric points.
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  • 11
    Electronic Resource
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982) 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 12
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A silver stain technique has been developed to study proteins in unconcentrated cerebrospinal fluid (CSF) after isoelectric focusing. This method is highly sensitive, and bands containing 25 to 50 ng protein can be clearly distinguished, so that small volumes (40 μl maximum) of native CSF can be used. Individual proteins (e. g., immunoglobulin G) can be detected easily by specific immunofixation. It is also possible to perform direct precipitation and direct specific immunofixation on a single gel in order to compare side by side the patterns of the whole and of specific proteins from different samples of CSF. The technique is simple and highly reproducible, and results are obtained 6 h after sample deposition (if immunofixation is used, a further 24 h washing is necessary). The sensitivity and versatility of this technique (immunofixation can be applied to the detection of any antigen) should permit its extension to other biological fluids with a low protein content.
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  • 13
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Protein profiles of skin fibroblasts labelled with [35S]-methionine from patients with Duchenne muscular dystrophy (DMD) have been compared with those of cells from normal individuals by isoelectric focusing on thin polyacrylamide gels containing denaturing and solubilising agents cast on silanized supports. The routine method of sample solubilisation used a mixture of 8 M urea and 2 % NP-40. The inclusion of sodium dodecyl sulphate (SDS) in the sample was found to result in removal of non-ionic detergent from the gel even if a competition step had been used. In the presence of SDS less material remained at the point of sample application with a concomitant increase in bands in the middle region of the gels. Gels containing a mixture of sulfobetaine and NP-40 were found to be inferior to those with 8 M urea and 2 % NP-40, and high levels of urea were found to precipitate the zwitterionic detergent. No consistent qualitative differences between normal and DMD patterns were observed using any of the solubilisation methods on pH 3 to 10 or pH 8 to 10.5 gels. In order to facilitate quantitative analysis by gel slicing techniques, a plastic sheet was developed which would reliably bind acrylamide in the presence of 8 M urea and 2 % NP-40. The quantitative analysis revealed significant differences between normal and DMD profiles, but the relevance of these changes to the disease state awaits further investigation.
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  • 14
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 255-262 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Recently we reported about a linear correlation between the logarithm of the size of native proteins (log mol mass or log Stokes' radius) and the square root of their migration distance (- √D) in linear polyacrylamide (PAA)-gradient gels (G. M. Rothe and H. Purkhanbaba, Electrophoresis 1982, 3, 33-42). The linearity between log MM and √D is not subject to time using homogeneous buffers in electrophoresis, no matter how the constants of the corresponding regression lines, slope and intercept change as a function of time. The realiability of this correlction has been re-examined with 0.7 mm thin gel plates and extending the time of electrophoresis under non-denaturating conditions from 2 to 95 h. It is demonstrated that the linear log size - √D-relationship is also applicable to sodium dodecyl sulfate (SDS) linear PAA gradient gel electrophoresis.
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  • 15
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A method is reported for the separation and partial purification of proteins on a preparative scale (around 100 mg or more total protein per separation run), using the isotachophoretic principle. The technique was carried out using a granulated gel (Ultrodex) as supporting medium, with conventional flat-bed electrophoresis equipment. This method was applied to the separation of multiple forms of glutathione S-transferase, derived from the soluble cytosolic fraction of cat liver homogenate. Of particular interest in the present work was the isolation of the highest mobility form of the enzyme, which also functions as a cytosolic ligand-binding protein for bilirubin. The advantages and disadvantages of isotachophoresis are compred with those of isoelectric focusing, using a simliar apparative set-up. The latter had the primary drawback that some forms of the enzyme, particularly those with most acidic or alkaline isoelectric points, were, to a certain extent, irreversibly inactivated following focusing, whereas isotachophoresis yielded considerably higher volume activities and resulted in less inactivation during separation. The loss in activity of some forms of the enzyme was particularly marked in isoelectric focusing in thinner gels with agarose as supporting phase. Isotachophoresis has become associated with quite complicated instrumental requirements. The simple form of this technique reported in the present work should provide a useful addition to the spectrum of methods available for protein separation and purification. The major limitation of the flat-bed configuration is that the actual resolution obtained cannot be fully exploited owing to the technical difficulties associated with sectioning the flat-gel.
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  • 16
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 284-288 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Recycling isoelectric focusing (RIEF) was used to isolate monoclonal antibodies from an electrophoretically heterogeneous rabbit antibody population. Milligram quantities of antibodies were processed to single band purity in 4 h. The ease of operation, extremely short run times, and high resolution of the RIEF apparatus give this system great flexibility. The demonstrated capacity of the RIEF system to process large quantities of protein suggests that the system is applicable to the largescale purification of antibodies.
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  • 17
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Isoelectric focusing was used to study the antibody clonotype patterns of outbred New Zealand White rabbits during pronlonged immunization with the gram positive bacterium Micrococcus lysodeikticus. Antisera were examined by analytical isoelectric focusing in 1% agarose gels using inexpensive carrier ampholytes which were synthesized in the laboratory. Clonotype patterns of antimicrococcal antibodies were visualized by radioautography using [125I]-labeled micrococcal carbohydrate antigen. Examination of the antibody clonotype patterns in antisera from a number of outbred rabbits revealed that variations in clonotype expression often occurred within an individual during successive rounds of immunization. These studies demonstrate the utility of analytical isoelectric focusing for monitoring antibody clonotype changes within an individual during immunization.
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  • 18
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 305-305 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 19
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Proteins in the cytosol, post-nuclear particulate and nuclear fractions from dorsolateral and ventral prostates of rats were analyzed and compared by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis. Protein species separated in the gel were stained with Coomassie Brilliant Blue R-250 (CBB), and expressed as (apparent molecular weight of the respective species x 10-3)K. (i) In the cytosol fraction the contents of 30K, 67K, 110K, and 120K proteins were abundant in the dorsolateral prostate. On the other hand, 14K and 16K proteins were specific to the ventral prostate. By carbohydrate staining, major glycoproteins were found to be 120K and 16K for the dorsolateral and ventral prostates, respectively. (ii) In post-nuclear particulate fractions in both lobes, proteins having molecular weights greater than 42 000 were abundant. Of these, the contens of 65K, 105K and 120K were higher in the dorsolateral prostate than in the ventral prostate. Glycoproteins having the same apparent molecular weight as detected in the cytosol fractions were also found in the post-nuclear particulate fractions of both lobes. (iii) In the nuclear fraction H2A, H2B, H3 and H4 histones were fundamentally similar between the two lobes, whereas H1 histones including two subspecies were slightly but significantly higher in the ventral prostate than the dorsolateral prostate. The most remarkable difference between the lobes was the content of 20K in the dorsolateral prostate which was at least 20 times higher than that found in the ventral prostate.
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  • 20
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 300-305 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Immuno-labeling of human peripheral blood lymphocytes with either polyglutaraldehyde or polyacrolein microspheres was shown by analytical electrophoresis to generate two electrokinetically distinct sub-populations of lymphocytes. By means of free-flow electrophoresis, the high mobility fraction was found to consist predominantly of T lymphocytes using an anti-T cell antibody, while the low mobility fraction consisted of lymphocytes labeled with immunomicrospheres, identifying these cells as B lymphocytes. The immunomicrosphere-induced reduction of B-cell mobility below that of the T cells thus allowed the enrichment and recovery of viable T cells in preparative quantities by free-flow electrophoresis.
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  • 21
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982) 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 22
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 315-317 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: To detect bacteriophage-antibody complexes, specific antiserum has been incubated with bacteriophages and antiserum-induced aggregation has been detected by agarose gel electrophoresis, using differential sieving of the gel to fractionate aggregates by size. Agarose gel electrophoresis should also be of use in monitoring reaction of other virus-sized antigens with antibodies.
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  • 23
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 307-314 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Improvements of isoelectric focusing (IEF) in agarose are described that result in consistently obtaining broad, linear pH gradients in the range pH 4 to 9.2 at equilibrium. Cathodic drift has been reduced by the use of a blend of commercial carrier ampholytes and by incorporating lysine and arginine in the catholyte as spacers. Resolution has also been enhanced by the use of thin gels, supplemented with sorbitol and glycerol. In addition, a comparison of two agarose preparations for isoelectric focusing was performed using two commercial carrier ampholytes. To minimise background staining, Triton complexes were removed by modification of the fixing and clearing procedures. These modifications to IEF in agarose are being applied to direct tissue isoelectric focusing (DTIF) of normal and diseased human skeletal muscle.
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  • 24
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    Weinheim : Wiley-Blackwell
    Electrophoresis 3 (1982), S. 317-321 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Polyacrylamide gel electrophoresis has been adapted to investigate bovine serum albumin (BSA) at sub-saturation concentration levels of sodium n-dodecyl sulphate (SDS). Two specific complexes were detected which coexisted between SDS concentrations of 0.4 and 5 mM. The binding isotherm for SDS on BSA was determined under comparable conditions by equilibrium dialysis and used in conjunction with the electrophoretic data to determine the composition of the complexes. The complexes had the following stoichiometry, BSA (SDS)5 and BSA (SDS)36, and closely resembled two of the three complexes that have been observed by moving boundary electrophoresis. The experiments indicate that the polyacrylamide gel electrophoresis (PAGE) technique when applied below surfactant saturation could be a useful tool in the study of protein-surfactant interactions.
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  • 25
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    Electrophoresis 3 (1982), S. 321-325 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The designs of both gel and elution chambers in preparative electrophoresis apparatuses are key elements for their performance. The present paper describes four types of designs which were developed by the author to alleviate the shortcomings found in the preceding designs. Performance tests, using human hemoglobin (Hb), partially purified haptoglobin 2-1 type (Hp 2-1), and bis-albumin-containing serum, show that insufficient dissipation of Joule heat and a heterogeneous electric field cause curvature and slant of the sample zones, and that only a chamber of optimal shape and size leads to minimal dilution, giving a good resolution. Moreover, notch, angle, and rim (Fig. 5), designed to support the gel, and tapering of the elution chamber to minimize its volume, are also important ministructures for the performance of the instrument. Unoptimal sets of these structures also cause concave sample bands and result in bad resolution and excessive dilution. These findings emphasize that in scaling up the apparatus, the structure must be designed on the basis of the detailed fundamental experiments from macrostructure to microstructure by using models of actual size.
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  • 26
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The genetic variability of the human group-specific component (Gc) system has been examined by isoelectric focusing with immobilized pH gradients. The phenotypes of the six common Gc types and of 15 rare genetic Gc variants are described and presented. High resolution of the Gc components is accomplished. The classification can be made without specific immune reaction. Isoelectric focusing with immobilized pH gradients represents a powerful tool for analyzing genetic variability.
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  • 27
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    Electrophoresis 3 (1982), S. 376-376 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 28
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The McIDAS computer system (Man-computer Interactive Data Access System) at the University of Wisconsin was used to analyze double-label autoradiographs of two-dimensional (2-D) electrophoresis gels. The 4 samples used to generate the 2-D gels were obtained from 8 vitamin D-deficient rat intestines 25 h after injection with 1,25-dhydroxyvitamin D3 (1,25-(OH)2 D3) or vehicle. To perform the analysis, the patterns on Kodak XAR5 (XR) film, which detects 14C + 3H by fluorography at -75 °C, and on Kodak NS-2T (NS) film, which detects 14C only by direct autoradiography at room temperature, were converted to digital images. The McIDAS system was used to multiply the NS image by a normalization factor which matched it to the XR image with respect to exposure. After background subtraction from both images, the XR image was divided by the aligned normalized NS image; the resultant ratio image was multiplied by an enhancement factor and colored according to pixel brightness. Polypeptides with a high or low ratio relative to the average ratio stood out clearly in contrasting colors on the ratio image and could be detected by visual inspection. The actual XR/NS density ratios of these highlighted spots could then be quantitated by spot integration. To test the method, XR/NS density ratios were measured for 34 spots on each of the 4 films, sets and the spot ratios compared to the spot appearances on the ratio image. With the exception of a few false positives, agreement was good. Several polypeptides were found to be increased by 25-50 % relative to the average ratio while one polypeptide of molecular weight 50 000, approximate pI 5.5, was increased an average of 240 %.
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  • 29
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: In studies of genetic diseases such as Duchenne muscular dystrophy (DMD), two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) provides an indispensable tool for studying protein changes. For optimum use of 2-D PAGE it is important to maximize the resolution that can be obtained. In this study we have developed a system using flat-bed isoelectric focusing (IEF) with gels bound to a plastic backing for the first-dimension separation. This system, when compared to the conventional rod IEF system, was found to yield good resolution of both the acidic and basic proteins, which are normally separated using non-equilibrium systems. We have also used the principals of gradient engineering in both the IEF and sodium dodecyl sulfate (SDS)-PAGE dimensions to maximize the gel area used for the separations. Mixtures of various commercial carrier ampholytes were also used and were found to further enhance resolution.
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  • 30
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    Electrophoresis 4 (1983) 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 31
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: We have investigated the qualitative and quantitative differences in the two-dimensional (2-D) gel fluorographic patterns of biosynthetically pulse-labeled cellular proteins from the malignant cells of patients with various leukemias (acute myelogenous, acute lymphoblastic, chronic lymphocytic, and hairy cell). Significant similarities and differences between the major types of leukemias were found. An initial small data base was constructed using our GELLAB computer analysis system for 2-D gels in order to define methods for data base definition, normalization, and visual verification of results. Search strategies to find significant spot differences, both qualitative and quantitative, between currently accepted classes of leukemias were explored. Potential methods of expressing in a summary statistic the overall similarities and differences between gels were also investigated. A series of proteins whose relative synthetic rates may serve as potential markers of states of differentiation in human leukemias were identified in this initial data base and are reported here.
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  • 32
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    Electrophoresis 4 (1983), S. 1-19 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 33
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    Electrophoresis 4 (1983), S. 20-26 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The moving boundary theory has been applied to the special case in which the proton and hydroxyl ion are the sole counterions. Moving boundaries between two monovalent weak acids, two biprotic acidic ampholytes, two weak bases and two biprotic basic ampholytes were considered. This application of the theory leads to constituent concentration relationships, values for pH and conductance of each phase and step pH gradients when sequential moving boundaries are considered. In addition, rigorous conditions for achieving the steady-state in such systems are also presented. Application of the theory allows for the prediction of the formation and displacement of pH gradients. In contrast to the classical theory of pH gradients formed by ampholytes, the establishment of inverse pH gradients and the electrophoretic displacement of natural pH gradients is clearly accounted for.
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  • 34
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Sequential moving boundary electrophoresis with protons and hydroxyl ions as the sole counterions, consisting solely of six acids (system A) and of six bases (system B), gives rise to natural steady-state pH gradients similar to those predicted by theory (pH 2.4-5.5 for system A, pH 10.3-12.2 for system B). Mixtures of the constituents in system A and system B gave rise to a natural pH gradient spanning the pH range between the terminal electrolytes (pH 2.4 and 12.2) predicted for systems A and B. The predicted boundary displacement is negligibly small. Experimentally the boundary displacement could not be determined in view of the difficulty of separating it from the initial transient state in which the pH gradient is formed, and a final state in which the pH gradient decays.
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  • 35
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    Electrophoresis 4 (1983), S. 36-41 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The progressive increase in circuit resistance observed at times in polyacrylamide gel electrophoresis is attributable in part to the formation of zones of altered salt concentration at the interfaces between gel and solution. Similar changes have been reported for electrophoresis through sucrose gradients. Such zones must develop wherever migrant ions suffer a change in transport number. The paper develops a basic theory for such concentration changes. It is shown that a moving boundary will tend to arise at any interface between two media, leaving behind it a zone of altered concentration. The effect will in general be most noticeable at low ionic strengths and with electrolytes whose ions differ considerably in size, a condition applying to many common buffers. Where both ions are relatively small, diffusion is likely to obscure the boundary movement, but this will not affect the integrated change in concentration. The effect could have various deleterious consequences in gel electrophoresis, particularly in preparative apparatus. There are also implications for techniques such as isoelectric focusing and for the analysis of membrane phenomena.
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  • 36
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    Electrophoresis 4 (1983), S. 41-45 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The theory developed in the previous paper is extended to cover a system containing three ions. If an “inactive” electrolyte whose ions are equally affected by a retarding medium is added to a “zone-former” for which this is not the case, the main effect is to reduce the integrated concentration changes at the interfaces. Where a buffer contains two ions carrying charges of the same sign, the theory predicts a progressive change of pH within a zone of altered concentration. Other sources of pH change are also considered. Where a buffer includes an uncharged weak acid or base, changes in ionic concentration at an interface will lead to changes in pH. Other changes may arise from the migration of water ions, whose contributions are normally neglected. This is not justified where there are large discontinuities in conductivity. Expressions are derived for the changes in pH under different circumstances. In some cases no steady-state is possible and there are accelerating shifts of pH at the boundaries of a zone. This could have important consequences in practical electrophoresis.
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  • 37
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    Electrophoresis 4 (1983), S. 46-52 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: An assumption used in developing the basic theory, that ionic retardation factors are substantially independent of solute concentration, is tested and found valid. The results of electrophoresis through 15% polyacrylamide gels are found to be in agreement with the theory. Zones of altered concentration appear in the presence of spermine tetrahydrochloride, sodium phosphate buffer (pH 7.2) or Tris-HCl (pH 7.0). The use of ionic retardation factors and transport numbers deduced from conductivity measurements leads to correct prediction of the sign of concentration change in each case. The direction and velocity of migration of a low-concentration boundary can also be predicted, together with associated changes in pH. Further confirmation comes from a detailed analysis of published work on electrophoresis through sucrose gradients. The theoretical treatment is suitable for application to other systems (such as isoelectric focusing and isotachophoresis) where a gel is used as a stabilizing medium, and where effects of the kind discussed may produce unexpected distubances.
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  • 38
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Macromolecules isolated from human erythrocyte membranes which expressed I/i and ABH blood group activities were analyzed by quantitative immunoelectrophoretic techniques in order to determine the distribution of and the relationship between these two blood group systems. To help in these studies a rocket immunoelectrophoretic assay, with a maximum sensitivity of 10 ng, was developed which could detect and quantitate erythrocyte macromolecules which expressed I/i and A and B blood group determinants. In addition, a modification of the tandem crossed immunoelectrophoresis technique was also used to elucidate the structural relationship between determinants of these systems on one of the isolated macromolecular species. Serological and other immunological data are presented which throughly support the immunoelectrophoretic results. From these studies we have concluded that I and most likely i antigenic determinants are primarily expressed on poly(glycosyl)ceramides (i. e. macroglycolipids) and possibly to a lesser extent on Band 3. I active poly(glycosyl)ceramide could be isolated in equal quantity from any adult ABH type erythrocyte; i activity was found in similar quantity in the same fraction isolated from one i adult erythrocyte population. Besides expressing I/i activity the various poly(glycosyl)ceramide fractions also exhibited A, B or H activity as well, dependent upon the ABH cell type from which they were isolated. Unlike the equal distribution of I, however, ABH activity was type-specific in that the poly(glycosyl)ceramide isolated from type A (either A or Ai), B or 0 cells could react only with anti-A, anti-B, or Ulex anti-H lectin, respectively. Using the modified tandem crossed immunoelectrophoresis (CIE) technique, it was established that the same glycolipid molecules which carry I blood group activity express the A and B determinants as well. Band 3 material isolated from 0 erythrocytes exhibited I, i and H activities. From CIE analysis the I activity of Band 3 appeared to reside in a subpopulation of this material.
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  • 39
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    Electrophoresis 4 (1983), S. 63-70 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: We describe the application of a general method of comparing and sorting the patterns of protein expression obtained from two-dimensional (2-D) electrophoresis of a mixture of proteins. The method involved the use of two multidimensional classification programs and was applied, first, to the comparison of the protein patterns expressed at different stages during nymphal differentiation of imaginal wing discs in the insect Pieris brassicae. Comparison of these stages was based on the similarity of protein expression. The technique used allowed processing of all the information visible on a gel and took into account the variations in most of the spots labeled. Two qualitatively different stages of protein expression were found during the nymphal stage, and fine variations not revealed by any other method were shown to exist in genetic programing. Next, the method was applied to sorting the different polypeptides expressed; this was also done on the basis of their similarity of expression. We were able to characterize three groups of related peptides with common regulation features and apparently common physicochemical characteristics. The complete map of the most highly correlated peptides, which may constitute subunits of the same protein, was constructed by the programs, thus permitting fast rational analysis of protein expression. The clinical applications of these classification techniques are discussed.
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  • 40
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    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Search strategies for finding spot differences among multiple two-dimensional (2-D) polyacrylamide electrophoresis gels are discussed in the context of the GELLAB spot data base management system. A 2-D gel experiment should have a well-defined biological experimental and preparation protocol reflecting the hypotheses of the problem. So too should the analysis of its corresponding 2-D gel computer spot data base have a protocol. This protocol is heavily influenced by the nature of the biological experiment as well as 2-D gel preparation considerations including the realities of artifactual and systematic noise. It is further influenced by constraints due to computational considerations. The search strategy is that part of the analysis protocol in which an experimenter iteratively defines tests to find significant spot differences. One goal of designing a well thought out search protocol is to reduce the number of search iterations required. Aspects of some requirements and constraints for useful search strategies are discussed.
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  • 41
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: We describe a system for accurate photometry and analysis of two-dimensional (2-D) gels, and its application to both high and low resolution gels. Image acquisition is video-based and includes methods of data correction necessary for accurate photometry. The analysis is based upon a method described previously by Lutin et al. [8], which we have modified for improved stability and adapted to run on our PDP 11/60 computer. We illustrate analysis of a typical gel with a sequence of images showing the data while Gaussian components are estimated, removed, added and fitted as the iterative algorithm proceeds. We conclude by demonstrating the use of a mathematical curve-of-growth model for calibrating peak volumes vs. protein loading.
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  • 42
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    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The identification of turkey meat in food products has been accomplished using specific antisera against turkey troponin T. This protein (Mr 37 000) was extracted from fresh muscle tissue and isolated by a procedure that included free-flow electrophoresis as final fractionation step. Preparations of troponin T with purities of more than 95 % were applied as antigen in the immunization of rabbits. Several standard immunological techniques were used to determine additions of turkey meat in food products heated to different temperatures (including roasting temperature). That way, it was possible to also detect additions of chicken meat on the basis of a partial identity between troponins T from turkey and chicken muscle.
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  • 43
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    Electrophoresis 4 (1983), S. 257-258 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Polyacrylamide gradient gel electrophoresis is a sensitive and high resolution method for the characterization of commercial peanut lectin preparations. It is suitable for the detection of aggregates in lyophilized samples.
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  • 44
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: We have studied changes in plasma proteins in a patient bitten by a western diamondback rattlesnake (Crotalus atrox). Samples obtained at intervals during recovery were analyzed by “low resolution” two dimensional (2-D) gel electrophoresis, a method which resolves at least 50 plasma components. The results show three days of complete afibrinogenemia, followed by gradual return of fibrinogen to a normal level. Both α- and β- lipoproteins also appeared altered or decreased in concentration during this period. An anomalous change in electrophoretic mobility of a portion of complement component 3 (C3) was detected during the first 15 days, but not at day 38. This modified protein was not C3b or C3c. A short incubation of human plasma or purified C3 with venom in vitro, did not mimic in vivo effects on either fibrinogen or C3, but plasma lipoproteins were modified directly in vitro. It is possible that the in vivo effects of venom on C3 and fibrinogen, as revealed by the 2-D gel electrophoretic method, are indirect and require release or activation of cellular proteases.
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  • 45
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    Electrophoresis 4 (1983), S. 265-269 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The silver staining procedure of Oakley et al. [3] has been applied to parotid saliva proteins and certain protein standards fractionated by isoelectric focusing and electrophoresis in denaturing and non-denaturing polyacrylamide gels. This staining method was up to 100-fold more sensitive than Coomassie Blue staining for sodium dodecyl sulphate-containing gels and for focusing gels, after prefixation. In non-denaturing gels, however, the relative sensitivity (i.e. silver vs. Coomassie) of different bands varies widely but this can be overcome by silver staining of gels after Coomassie Blue staining.
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  • 46
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    Electrophoresis 4 (1983), S. 269-272 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A methylamine-incorporating silver stain is described for the detection of deoxyribonucleic acid (DNA), protein and lipopolysaccharide in thick (3 mm) polyacrylamide gradient gels (4-20 % w/v). Its sensitivity for DNA and protein is more than 100 times greater than ethidium bromide and Coomassie Brilliant Blue R-250, respectively. It detects 0.01 ng DNA, 0.16 ng of human serum albumin and ng quantities of lipopolysaccharide. DNA gives red bands whereas protein and lipopolysaccharide give brown/black bands. The staining procedure is inexpensive, highly reproducible and overcomes the problem of background stain associated with thick gels. It also gives excellent results with thin (1 mm) gels and can be used to stain a number of gels simultaneously. A simplified staining procedure is also discussed.
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  • 47
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    Electrophoresis 4 (1983), S. 261-265 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The isoelectric point (pI) of S-adenosyl-L-methionine and some of its metabolic products has been determined by an isoelectric focusing technique. The experimental pI values of S-adenosyl-L-methionine and S-methylmethionine are 7.24 and 6.85, respectively, and the pI values of S-adenosyl-L-homocysteine and homocysteine are 6.05 and 5.65, respectively. This indicates that the contribution by adenosine, adenine and ribose to the total electric charge of S-adenosyl-L-methionine or S-adenosyl-L-homocysteine is approximately 0.40 pI unit. The differences in the pI values between two pairs of compounds (S-adenosyl-L-methionine vs. S-adenosyl-L-homocysteine and S-methylmethionine vs. methionine) are very close (1.19 and 1.14, respectively). This difference is the amount of pI value contributed by the sulfonium group which has been formed by methyl addition. Surprisingly, the presence of a permanent positive charge at the sulfonium center in S-adenosyl-L-methionine and S-methylmethionine does not result in a higher pI values for these compounds. This might be due to the partial neutralization of the positive charge by the formation of carbanion. The mechanism of charge neutralization in these sulfonium compounds is discussed.
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  • 48
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    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Conventional electrophoretic methods of assessing the purity of a protein are both expensive and laborious. The method of zonal isoelectric precipitation electrophoresis involves precipitation of the protein under investigation at its isoelectric point after application onto cellulose acetate membranes. Contaminating proteins will be mobile and are easily visualized by conventional staining methods. Application of zonal isoelectric precipitation electrophoresis to the storage proteins of Vicia faba seeds (legumin and vicilin) has proved valuable in this laboratory, and, by adjustment of the buffering system, can be made to work for other protein mixtures.
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  • 49
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    Electrophoresis 4 (1983), S. 316-317 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: We have studied the electrophoretic mobility of purified human C reactive protein (CRP) in a gradient from pH 3.0 to 9.0 produced by the titration curve method. The results suggest that the major species has a pI at pH 6.3 ± 0.2. From pH 7.2 to 8.5, CRP was at its isoelectric point and did not migrate from the application trough. From pH 4.0 to 5.0, CRP produced a hazy, diffuse pattern most probably due to instability in the region close to the isoelectric point of the acid-denatured form of the molecule. Below pH 4 CRP resolubilized to assume heterogenic anionic forms.
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  • 50
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A previous design of an apparatus for extraction and concentration of proteins from gel slices by moving boundary electrophoresis has been simplified, making it into an upper buffer reservoir accessory for the multifunctional gel tube apparatus commonly used for gel electrophoresis. The design of the collection cup has been improved to facilitate assembly and thereby reduce the risk of leakage. The performance of the apparatus was evaluated by the isolation from sodium dodecyl sulfate - polyacrylamide gel electrophoresis of radiolabeled bovine serum albumin and glucagon receptor.
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  • 51
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    Electrophoresis 4 (1983), S. 399-404 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Soluble guanylate cyclase purified from rat brain exhibits about 30 different components between pH 5.3 and 6.5 on polyacrylamide gel isoelectric focusing (IEF) Specific immunodetection after IEF of guanylate cyclase from fresh rat brain supernatant allows the detection of a complex profile, indicating that the complex pattern observed with purified enzyme is not related to sample aging. In contrast, purified enzyme gives only one major band on electrophoresis in presence or absence of sodium dodecyl sulfate and a single line of immunoprecipitation was obtained on crossed immunoelectrofocusing. The IEF pattern exhibited by guanylate cyclase is dependent on the sample concentration, the pH range of sample application, the carrier ampholytes used and on the presence of urea in the gel. Fractionation tests, performed with partially purified enzyme or with purified enzyme, indicate that this complex pattern is produced during IEF and does not correspond to an inherent heterogeneity of soluble rat brain guanylate cyclase. The distribution of carrier ampholytes used to form the pH gradient and that of guanylate cyclase bands was found to be very similar at the steady-state of IEF, suggesting that interaction between carrier ampholytes and rat brain soluble guanylate cyclase can be involved in the generation of the complex IEF pattern.
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  • 52
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: It has been found that polyacrylamide matrices containing immobilized pH gradients interact strongly with at least two classes of proteins, histones and the histone-like, ‘high-mobility group’ (HMG) chromatin proteins, forming insoluble complexes. The nature of these interactions has been demonstrated to be purely ionical: the complexes are split by high ionic strength (0.5 M NaCl) and by altering the pH (full disaggregation being obtained at pH 5.5 and at pH 11.5). On the basis of these observations, soluble Immobiline polymers have been made, by polymerizing them in the absence of cross-linker (N,N′-methylenebisacrylamide). Several classes of Immobiline polymers can be produced: a) mixed-type polymers, containing a blend of basic and acidic Immobilines, in such ratios as to obtain any desired pH in solution; b) homopolymers with a pure carboxyl surface; and c) homopolymers with a pure amino surface. These polymers can be synthesized as ‘mono-pK species’ or as ‘multiple-pKcoils’, the latter providing a full range of charges over an ample pH-interval. It has been found that ‘carboxyl’ Immobiline homopolymers preferentially interact with the HMGl component among the HMG class, thus allowing the partial purification from a lysate by a simple precipitation step.
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  • 53
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    Electrophoresis 4 (1983), S. 404-407 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Poly R-480, an amphoteric dye of molecular weight 160 000,is the product of copolymerization reaction and can be expected to yield a polydisperse pattern in polyacrylamide gel isoelectric focusing (PAGIF). Such is indeed obtained in conventional PAGIF using commercial synthetic carrier ampholyte mixtures but not in buffer PAGIF, in which a few discrete dye bands are produced. Upon excision of single bands and segments of zones in buffer PAGIF and PAGIF in SCAMs, respectively, the entire original pattern is reestablished in each case, thereby confirming the artifactual nature of both the simple band pattern as well as the polydisperse patten. The simple pattern in buffer PAGIF prevails in the presence of 8 M urea and 8 mM CHAPS, while the polydisperse pattern obtained in SCAMs is resolved into multiple bands in the presence of either one or both of these agents. These observations suggest: a) hydrophobic and hydrogen bond dye-dye and/or dye-SCAM interactions produce the artifactual polydisperse pattern in PAGIF in SCAMs, b) electrostatic dye-dye interactions are responsible for the artifactual simple band pattern in buffer EF, and c) dye-SCAM electrostatic interactions produce the artifactual multiple band pattern in the SCAM-urea-CHAPS system. These data clearly underline the need for critical experimentation in the evaluation of PAGIF bands and band numbers.
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  • 54
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    Electrophoresis 4 (1983), S. 417-420 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Phenotyping for plasminogen (PLG) variants on 0.5 mm agarose isoelectric focusing gels enabled us to identify six different allotypes among the eight populations studied. PLG *1 and PLG *2 were seen at polymorphic frequencies in all the populations studied except Eskimos which had a gene frequency of 0.993 for PLG *1. The variants PLG *3, PLG *B, were seen at low frequencies in some of the populations, whereas PLG *M was only identified in the local White population. A new variant named PLG *D, which we consider to be a marker of black populations, was identified in local Blacks and Black Caribs at frequencies of 0.037 and 0.058, respectively.
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  • 55
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    Electrophoresis 4 (1983), S. 408-417 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Three approaches are described for fast and high resolution enzyme visualization in ultrathin-layer isoelectric focusing. (i) For direct visualization in the focused gel, solutions with reagent concentrations, increased 10-20 times over those normally used, were applied, accelerating and intensifying color development. Lactate dehydrogenase and alcohol dehydrogenase were visualized by overlayering the focused gel with the substrate and reagent solution. (ii) Membrane printing, employing polyamide or cellulose acetate membranes, pretreated with buffer and impregnated with the staining solution, was superior to direct visualization for some enzymes. Glycosidases were located by salting-out in the focused gel with 90% ammonium sulfate, followed by printing with membranes impregnated with 4-methylumbelliferyl derivatives of carbohydrates. (iii) Ultrathin (100-200 μm) agarose gels, equilibrated before use with solutions containing either low or high molecular weight substrates, buffers and other reagents, replace the traditional overlay technique. Proteases (Pronase P) and phosphoglucomutase were visualized with ultrathin replicas. With all approaches visualization was completed within 2-5 min. For some enzymes elevated temperatures in the range of 60-80°C accelerated visualization and drying of the gel. With all techniques a permanent document was obtained which could be evaluated densitometrically and conveniently stored for later reference. The combination of high resolution separation and detection, capable of handling up to hundreds of samples within a fraction of an hour, and a minimum of effort and costs, is an attractive option for many potential applications.
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  • 56
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    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Antigenic variation of the schizont-infected cell agglutination-antigen on erythrocytes infected by Plasmodium knowlesi is due to the expression of different malarial proteins. Here we examined whether antigenic variation is accompanied by multiple phenotypic changes in the proteins synthesized by P. knowlesi. The malarial proteins of two clones, one of which was produced by antigenic variation from the other clone in vivo, were labeled by [3H]isoleucine uptake during in vitro parasite growth. The proteins were separated by two-dimensional gel electrophoresis, detected by fluorography and compared using the GELLAB computer system. In the molecular weight range 35 000 to 230 000 and pH range 4.55 to 6.10, we found only four qualitative differences and two robust quantitative differences among approximately 500 proteins characterizing the protein phenotype of these clones. One clone exhibited four minor protein spots absent from the other. We conclude that antigenic variation in P. knowlesi represents the differential expression of a very small number of malarial genes.
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  • 57
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    Electrophoresis 4 (1983), S. 432-433 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A method for drying polyacrylamide slab gels of various size and gel composition (T 7.5-15 %, C 2.67 %) is described. The destained gels, containing glycerol, are overlayered with gelatin and dried. Transparent and flexible sheets are obtained which can be stored for extended periods and may also be used for autoradiography.
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  • 58
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: α-Amylase isoenzymes present in human body fluids were separated by two-dimensional electrophoresis in the absence of denaturing agents and detected by blue starch staining. Human body fluid samples (5 sera, 2 salivas, 1 pancreatic juice and 1 urine) were subjected to the analysis. Two to six activity spots of α-amylase were detected for each sample. The spots were classified into four main species by their isoelectric points (pI) 6.9, 6.5, 5.8 and 5.3. All the α-amylase isoenzymes showed apparent molecular weights above 140 000.
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  • 59
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    Electrophoresis 4 (1983), S. 433-435 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A simple and versatile method was developed for detecting endoproteinases by nondenaturing polyacrylamide gel electrophoresis. A vertical strip of the resolving gel is subjected horizontally to a second electrophoresis in the presence of a substrate protein and sodium dodecyl sulfate (SDS). The location of proteolytic activity in the original gel strip is revealed by the disappearance of substrate and the appearance of proteolytic products (due to limited proteolysis) in the second gel. The pattern of peptide fragments produced permits the identification of the protease responsible.
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  • 60
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    Electrophoresis 4 (1983), S. 436-438 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: One-dimensional sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) of protein in the presence of Nonidet P-40 (NP-40) induces vertical streaking which breaks horizontal bands of protein to produce a “multiple spot” effect. The same effect can be induced upon high resolution two-dimensional electrophoresis if the NP-40 concentration of the first-dimension isoelectric focusing (IEF) gels is increased to 4 % w/v and the gels electrophoresed (SDS-PAGE) without SDS-equilibration. The relevance of this phenomenon as regards interpretation of two-dimensional electrophoretic patterns is discussed.
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  • 61
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    Electrophoresis 4 (1983), S. 440-440 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
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  • 62
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    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Group specific component (Gc) is known to interact with both vitamin D3 metabolites and actin. The present study was undertaken to determine if analytical isoelectric focusing could form the basis of a simple and reliable method for discriminating native Gc and complexes with 25-hydroxycholecalciferol (25(OH)D3) from those formed with actin and with both ligands. Increasing amounts of G-actin and/or 25(OH)D3 were added to purified Gc of both Gc1 and Gc2 phenotypes. Actin and 25(OH)D3 interacted independently and simultaneously with native Gc, giving rise to three different complexes of increasing acidity: Gc-25(OH)D3, Gc-actin, and actin-Gc-25(OH)D3, which were clearly resolved from the native Gc protein and from each other. In addition, the inherent differences in microheterogeneity and polymorphism between the two major phenotypes examined (Gc1 and Gc2) were also retained in their respective complexes. Similar results were obtained upon addition of 25(OH)D3 or actin to whole human serum, the bands corresponding to native or complexed Gc being recognized in this case by print immunofixation. These results indicate that complexes formed between Gc protein and both 25(OH)D3 and actin can be clearly detected and resolved by electrophoretic procedures.
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  • 63
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    Electrophoresis 5 (1984), S. 26-29 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A widely applicable procedure for electrophoretic separation and quantification of proteins is described. Different colored markers of myoglobin were prepared by carbamylation and those with suitable isoelectric points (pI's) were isolated. Such markers were added to samples of serum and plasma which were examined by improved isoelectric focusing in agarose gel. This facilitated isolation of a certain transferrin with pI 5.7. This protein was quantified in gel pieces by zone immunoelectrophoresis assay. The overall S.D. was 〈10%. Immunofixations were performed to check the quality of focusing and the accuracy of gel punching.
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  • 64
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    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A simple technique has been developed for the electrophoretic extraction of milligram to microgram quantities of protein, under constant monitoring by dye line, in a concentrated form from polyacrylamide gels run under alkaline, neutral and acidic conditions. Typically, the extraction time from 5 gel slices per tube containing about 1.2 mg of bovine serum albumin or α-chymotrypsinogen A was 3 h, and the maximum concentration of the recovered protein was 5 mg/ml with a total recovery of more than 90% in all cases. Higher protein concentrations (11 mg/ml) could be obtained by increasing the extraction time to 3.5 h or by using resins like glass beads. The alkaline extraction system has been applied to the purification of glutamyl-tRNA synthetase up to homogeneity, and also to ferritin. This technique can also be used under reducing conditions and the scale of operation can be adjusted by the number of tubes or number of slices.
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  • 65
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    Electrophoresis 5 (1984), S. 35-42 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Proteins visualised by Coomassie Blue staining of two-dimensional polyacrylamide gels of complex mixtures of brain proteins were blotted onto nitrocellulose sheets. The Coomassie Blue stain was transferred simultaneously and bound strongly to the nitrocellulose, giving a copy of the original gel pattern. Using specific antisera and a second antibody coupled to horseradish peroxidase, proteins in the original mixture could be detected on the nitrocellulose in quantities less than 25 ng. The Coomassie Blue and horseradish peroxidase stains were distinguishable by a suitable filter, allowing precise correlation of spots stained by Coomassie Blue with spots stained with the brown immunoperoxidase reaction product. The technique was used to identify related proteins in electrophoretograms of brain extracts from different animals.
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  • 66
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    Electrophoresis 5 (1984), S. 54-55 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Nonspecific antibody binding either to nitrocellulose membrane sites or to transferred and immobilized proteins is eliminated (or minimized to insignificant levels) by treatment with a liquid gelatin preparation. This increases the specificity and sensitivity of nitrocellulose binding immunoassays, and allows incubation at 4°C which minimizes bacterial contamination and/or damage to biologically-labile proteins.
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  • 67
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    Topics: Biology , Chemistry and Pharmacology
    Notes: A simple apparatus and a convenient program for evaluation of two-dimensional electrophoretograms have been developed. The hardware system comprises a charge-coupled device (CCD) camera, four pages of frame memory (FM), a page of display memory (DM), a video-monitor cathode-ray tube (CRT), a digitizer (DIG) and two ports of parallel interfaces (PIO). A small desk-top microcomputer is connected to the apparatus via the interfaces. The system program named frame-imagememory controller (FIMC) has been developed under an assembler of the microcomputer. FIMC is a package of subroutines, and utility programs for two-dimensional densitometry can be written in BASIC language simply with the help of FIMC. Unevenness of basal gray level, caused by the nonuniformity of illumination in the camera's field of view, is eliminated from the pixel data by a method of blank subtraction. Background gray level, caused by protein staining procedures, is corrected by a method of local background subtraction. The two-dimensional densitometry system, equipped with a CCD camera, is applicable not only to transparent gels but also to opaque membranes, and it shows a high reliability in optical measurement in the range of 0-2 O.D.
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  • 68
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    Electrophoresis 5 (1984), S. 73-76 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The electrophoretic separation of RNA species in composite ultra low/medium gelling temperature agarose is described. The resolution obtained was superior to that observed with the standard medium gelling temperature agarose alone. Poly(A)-containing mRNA was successfully fractionated and recovered in a biologically active form from the separating media.
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  • 69
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    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The method to localize and quantitate glycoproteins on polyacrylamide gels is based on the binding of Concanavalin A to the glycoproteins and the subsequent coupling of horseradish peroxidase to the glycoprotein - Concanavalin A complex. The complex is visualized by the oxidation of 3,3 -diaminobenzidine with horseradish perexidase - H2O2, forming a brownish stain at the gel surface. Various parameters are analyzed and a scheme for the optimal staining of macro and micro slab gels is given. The quantitative evaluation of the stained gels is demonstrated. The staining and quantitation of nitrocellulose transfers is also shown.
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  • 70
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    Electrophoresis 5 (1984), S. 133-138 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Two polyacrylamide gel electrophoretic systems for the separation of small peptides are described. In both systems the samples are concentrated by a buffer discontinuity, and the peptides separated according to size and charge in 40-50 % polyacrylamide resolving gels. The acidic gel has an operative pH between 3.0 and 3.1 while the alkaline gel has an operative pH between 9.1 and 9.2. The lower limit of resolution is about 100 daltons for a peptide with one positive charge in the acidic system. The radioactive peptides are detected by autoradiography. Peptides with a free amino group can be fixed in these gels with formaldehyde, so that fluorographic procedures can also be used for increased sensitivity. These techniques enable precise comparison of non-derivatized peptides from complete protein fingerprints and offer a simple one-dimensional analytical method for protein comparison, as well as a general method for separating and analyzing small peptides.
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  • 71
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    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A simple and accurate method for the monitoring of the voltage distribution across horizontal slab gels in isoelectric focusing is described. Voltage is measured by passing a single Pt wire electrode (connected to an external voltmeter and to one of the electrodes through the power supply) through holes in the apparatus lid, bored at 5 mm distance from one another across the migration path. Conductances along the migration path calculated from direct voltage measurements are by one order of magnitude lower than those measured by conductimetry on gel slice eluates. Segmental resistances calculated from the measured voltages across adjacent holes in the lid during isoelectric focusing (IEF) add up to the total resistances across the gel obtained from the voltage and current readings on the power supply. In confirmation of previous reports, segmental resistance in IEF was shown to increase dramatically with time, with maxima shifting progressively from pH 4 to 5 in a representative pH3-10 gradient. Joule heat production in IEF decreases with increasing molecular weight of the carrier ampholytes.
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  • 72
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    Electrophoresis 5 (1984), S. 148-154 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The electrophoretic mobility of brush border membrane vesicles purified from the rabbit ileum by chromatography on porous glass beads has been measured with a Laser-Zee microelectrophoresis instrument. The value obtained was measured in a solution containing 0.1 M NaCl, 10 mM HEPES-Tris and 50 mM mannitol at pH 7.37 and 20 °C was -1.41 μm s-1 V-1 cm. The mobility depended on both pH and ionic strength of the solution. The isoelectric point was observed to be at pH 4.25. The brush border membrane vesicle surface was found to be highly negatively charged: there are 1000-2000 negative charges on each vesicle at ionic strength 0.1. Treatments with cation had an effect on mobility and gave a reversal of surface charge.
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  • 73
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    Electrophoresis 5 (1984), S. 143-147 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A program has been developed for the computer-controlled cooperation of 4 commercially available stepmotor-driven burettes to form density gradients in polyacrylamide gels and solute gradients for other purposes such as centrifugation and low pressure chromatography. The slope of the gradients was defined by entering up to 200 endpoints of straight lines with the percentage of the total volume and the concentration of the gradient-forming solute as coordinates. The possible minimum increment of the discontinuous gradients is 0.5 % of the total range. They are mixed at variable flow rate by two burettes containing the high and low density acrylamide solutions and two additional burettes for the admixture of two catalysts at variable volume proportions. Within 10 min gradients with total volumes between 4 and 650 ml can be delivered. Gradient volumes smaller than 4 ml are possible if an average increment of 〉 0.5 % is accepted. The program meets the requirements of reproducibility for high resolution gradient gel electrophoresis and isoelectric focusing in immobilized pH gradients. All input data for the definition of the gradients can be displayed as a hard copy by a matrix printer and stored on tape. Thus the device meets the requirements of proper documentation of a given gradient in a publication and for reproduction in another laboratory. Other types of gradients for volumes of up to 1.4 liters can be produced by a subprogram converting the 4 burettes into a gradient pump with continuous outflow as used for column chromatography. The speed is variable between 0.4 ml and 5.2 liters per hour with minor pulsation only in the very low range.
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  • 74
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    Electrophoresis 5 (1984), S. 165-167 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A method is described for obtaining nondistorted, reproducible phosphoglucomutase-1 subtyping patterns from fresh human bloodstains by ultrathin-layer polyacrylamide gel isoelectric focusing. Electrofocusing of phosphoglucomutase on 0.2 mm thick gels took 52 and 80 min on the Cold Focus Apparatus and Ultrophor, respectively, when the distance separating the electrodes was 8.0 cm, whereas a 9.5 cm distance between electrode wicks required 95 min on the Multiphor to complete isoelectric focusing. The gels with 8.0 cm between electrode wicks provided sharper band patterns compared with the gels with 9.5 cm between electrode wicks.
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  • 75
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    Keywords: Chemistry ; Biochemistry and Biotechnology
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    Topics: Biology , Chemistry and Pharmacology
    Notes: A preliminary study has been made of the use of immobilised pH gradients (Immobiline gels) for the separation of the six commonly occurring erythrocyte acid phosphatase (ACP1) phenotypes in blood lysates and stains. These pH gradients are immobilised in the matrix of the polyacrylamide gel and possess different properties from conventional isoelectric focusing (IEF) gels. A comparison was made between the profile of the ACP1 isoenzymes apparent on conventional IEF gels with that seen on the Immobiline gels.
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  • 76
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    Electrophoresis 5 (1984), S. 171-171 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The mobility of the “Tris-borate” ion at different temperatures and ionic strengths is calculated using previously published equations for calculating the approximate mobility of composed ions.
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  • 77
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    Electrophoresis 5 (1984), S. 257-262 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The possibility of polymerizing Immobiline gels by a batch procedure and then storing them dry for subsequent use has been investigated. The gel swelling kinetics have been studied as a function of the following variables: a) solvent composition (plain water, 8 M urea, 2% Nonidet P-40 and their mixture); b) gel composition (varying %T at fixed %C); c) temperature (in the range 20-60°C); d) gel thickness (from 0.5 to 2 mm); e) operative pH interval (from the extreme acidic, pH 3.5-5, to the extreme alkaline, pH 8.5-10, ranges) under isoionic strength conditions. The following practical guide-lines for gel drying should be observed: a) the gels should have a low matrix content (3 %T or lower); b) they should have reduced thickness (0.5, max. 1 mm); c) alkaline gels should be dried in vacuo over silica, to prevent CO2 absorption; d) the gels should be extensively washed prior to drying. Swelling kinetics are discussed in terms of Langmuir adsorption isotherms, while the diffusion of water in Immobiline gels does not seem to follow a passive Fickian mechanism.
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  • 78
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    Keywords: Chemistry ; Biochemistry and Biotechnology
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    Topics: Biology , Chemistry and Pharmacology
    Notes: A number of different carrier ampholyte mixtures were compared in order to produce a pH gradient which separated the phosphoglucomutase-1 (PGM1) phenotypes most efficiently. Ultrathin gels incorporating a mixture of pH 5-7 and pH 6-8 Ampholine was shown to produce the best results. Application of samples to the cathodal end of the gel reduced the problem of overloading which is frequently encountered with ultrathin gels.
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  • 79
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    Electrophoresis 5 (1984), S. 263-269 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Film detection of compounds labeled with the weak beta-emitters 3H and 14C is demonstrated for electroimmunoprecipitated proteins in agarose gels by means of the water-soluble fluorophor sodium salicylate. The degree of enhancement of film detection of tritium and carbon-14 with 0.7 M sodium salicylate paralleled fluorography with diphenyloxazole on polyacrylamide gels. The method was optimized and the sensitivity, expressed as radioactivity per cm immunoprecipitate, was 0.9 nCi/cm (2000 dpm/cm) in 24 h for 3H and 0.4 nCi/cm (830 dpm/cm) in 18 h for 14C. The procedure was found superior to the commercially available enhancement solutions ‘EnHance’ and ‘Amplify’. Salicylate fluorography on Kodak X-Omat L and AR-5 films was about 30 and 60 times more sensitive than Ultrofilm 3H. With 14C-labeled anti-antibodies rocket electroimmunoprecipitation corresponding to about 50-100 pg protein could be visualized in 7 days. Conclusively, the method is rapid (soaking and drying require about 30 min), sensitive, reproducible, cheap, and advantageous if the immunoplates are to be stained for protein after fluorography.
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  • 80
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    Electrophoresis 5 (1984), S. 269-274 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The changes of the electrophoretic mobility (EM) of human monocytes during invitro maturation into macrophages were investigated. Incubation of isolated monocytes for longer than 4 days was always accompanied by an increase of the EM of the monocytes. This increase of the EM could only be inhibited when lymphocytes were incubated together with the monocytes. The inhibitory effect of the lymphocytes was optimal when the culture medium was supplemented by autologous plasma and when the cell suspension was kept in teflon beakers, but it was reduced when the culture medium was supplemented by fetal calf serum (FCS) and when the cell suspension was kept in polystyrene dishes. The macrophages, which showed increased EM after 10 days of incubation, had equal antibody-dependent cell-mediated cytotoxic (ADCC) activity but lower plaque-forming activity than the macrophages which retained their original EM during incubation. The finding of macrophage sub-populations which differ in their EM provides a good opportunity to isolate and further investigate macrophages, which may have different biological activities.
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  • 81
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    Electrophoresis 5 (1984), S. 280-281 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A simple and time-saving electrophoretic method for the determination of the 6 common phenotypes of red cell esterase D (ESD) is presented. Using a continuous buffer system composed of malic acid, the separation of the allozymes is accomplished at pH-values between 5.35-5.45 by thin-layer agarose gel electrophoresis in 4 h. Until now, a combination of electrophoresis and isoelectric focusing was required to obtain the same results. The economical advantage as well as the modest requirements concerning laboratory equipment are evident.
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  • 82
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    Electrophoresis 5 (1984), S. 282-285 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: As isoelectric focusing in agarose gels has many merits it is valuable to be able to visualize proteins at concentrations lower than detectable with Coomassie Brilliant Blue R-250 staining. A silver staining procedure has been adapted to such gels and many proteins including serum samples have been studied. Silver staining gave very sharp protein bands and was about 30 times more sensitive than Coomassie Brilliant Blue R-250 staining. This is important to allow direct application of dilute protein solutions such as urine and cerebrospinal fluid. This may also avoid artifacts e.g. caused by concentration methods.
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  • 83
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    Electrophoresis 5 (1984), S. 285-288 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: In the classical procedures following gel electrophoresis, calmodulin fails to stain with silver. Furthermore, once stained with Coomassie Brilliant Blue R-250, calmodulinis not capable of undergoing silver staining and remains as a blue band except when pretreated with glutaraldehyde. Such a double stain technique allows the selctive detection of calmodulin in a mixture of proteins. However, it demonstrates some limitations of the silver staining procedures.
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  • 84
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    Electrophoresis 5 (1984), S. 289-297 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: By using light (“photodevelopment”) to develop a metallic silver image of proteins separated on polyacrylamide gels, it is possible to visualize protein and nucleic acid patterns within 10 min after electrophoretic separation. This light catalyzed silver stain is based on establishing gel conditions in which ionic silver is reduced to silver metal in the presence of light energy at a different rate in gel regions containing biopolymers (such as proteins or nucleic acids) than the rate of reduction in regions which are devoid of such biopolymers. This photodevelopment method requires only two solutions: a solution to “fix” the proteins and a solution containing silver ions, which produces an image when exposed to light. This type of protein stain has achieved a sensitivity of 0.5 ng of protein. DNA separated on polyacrylamide may also be visualized with this stain. However, DNA generally produces a negative image. Studies of photodevelopment silver stains allow further insight into the processes which are involved in the ability of silver to form images of biopolymers separated by electrophoresis.
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  • 85
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    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Silver staining was examined as a means for detecting antigenic polypeptides separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) after recovery from immunoprecipitates produced by crossed immunoelectrophoresis and liquid precipitation. Both precipitin procedures resulted in detection of the expected polypeptides with bovine serum albumin (BSA) and human transferrin as model antigens, as well as microheterogeneity of BSA, whereas antigenic polypeptides were rarely detected with Coomassie Brilliant Blue staining of SDS-PAGE. The technique is advantageous over the use of radiolabeled antigens in being less expensive and time consuming and over antibody-blot procedures in detecting antigenic activity prior to the denaturing conditions of SDS-PAGE. Possible drawbacks are the appearance of antibody polypeptide chains on the electrophorograms as well as other non-antigenic components when crude extracts of virally-infected cells are used as antigen.
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  • 86
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    Electrophoresis 5 (1984), S. 358-361 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Dansylated proteins have been used in combination as isoelectric point and molecular weight standards and included in gel samples for separation by two-dimensional polyacrylamide gel electrophoresis. These proteins provide invariant points of reference that facilitate the unequivocal identification of proteins separated by two dimensional polyacrylamide gel electrophoresis without affecting resolution. Moreover, immunoautoradiograms of Western blots can be aligned with their corresponding gel patterns with great accuracy. The logical extension of the established usage of dansylated protein standards to these applications is described.
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    Electrophoresis 5 (1984), S. 370-372 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A technique for the preparation of ultrathin titration curve gels, 50 μm polyacrylamide gels and 100 μm agarose gels, is presented. By separating protein standard mixtures the advantages of this ultrathin-layer technique in terms of more convenient handling, cost and time are demonstrated.
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  • 88
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    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: High resolution two-dimensional polyacrylamide gel electrophoresis has been used to detect a soluble protein in extracts of human kidney which was not present in the electrophoretograms of other human tissues. This protein, coded kidney-acidic protein-60 (KAP-60) was purified to homogeneity and was characterized as having a native molecular weight of 85000, a monomer molecular weight of 35 000 and an isoelectric point of 5.6. KAP-60 was devoid of detectable carbohydrate or phosphate groups. Injection of the protein into rabbits produced antisera which were used to develop a radioimmunoassay for the protein and to localize the protein to specific cells within the kidney by the immunoperoxidase technique. A survey of human tissues by radioimmunoassay showed that KAP-60 was present in human kidney at approximately 150 times the concentration found in human liver and 300 times the level found in other human organs examined. Immunohistochemistry localized the protein to the proximal and collecting tubules in the kidney with no staining of glomeruli or distal tubules. The present study illustrates the use of high-resolution two-dimensional electrophoretic techniques in the detection of human tissue-specific proteins which may prove of clinical value in the biochemical diagnosis of tissue-specific damage.
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  • 89
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    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: This paper describes the visualization of the low density lipoprotein (LDL) receptor by ligand blotting technique using an anti-LDL-enzyme linked immunosorbent assay (ELISA). Solubilized membrance proteins from bovine adrenal cortex are subjected to sodium dodecyl sulfate (SDS) polyacrylamide gel electrophoresis, transferred to nitrocellulose paper and incubated with LDL. The combination of peroxidase-con-jugated second antibody and 4-chloro-naphthol/H2O2 allows rapid development of colored bands where LDL was bound to the receptors. Saturation of the LDL binding to the LDL receptor can be demonstrated. This highly sensitive and rapid ELISA avoids the need for continuous supplies of iodinated antibodies.
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  • 90
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Ultrathin-layer isoelectric focusing of the urinary alanine aminopeptidase in 100 μm agarose gels resulted in a better separation of the isoenzymes and proteins than in polyacrylamide gels. Although miniature isoelectric focusing over a 4 cm separation distance proved excellent for screening purposes, more details were observed in gels with a 10 cm separation distance. Optimum enzyme visualization was achieved with a modified overlay technique employing a 0.2% agar with substrate instead of the conventional 1 % agar overlay. After incubation the diluted agar overlay may be easily washed off without damaging the running gel.
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  • 91
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    Weinheim : Wiley-Blackwell
    Electrophoresis 5 (1984), S. 377-379 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The native protein patterns of human serum and unconcentrated cerebrospinal fluid, amniotic fluid, urine, sweat and tears have been detected by silver staining following two-dimensional electrophoresis in the absence of protein denaturants. Over 100 proteins were detected in both urine (80 μl) and sweat (40 μl), thereby demonstrating the high sensitivity of the approach. However, optimal sensitivity was only achieved following pre-equilibration of the gels in sodium dodecyl sulphate. The implications and possible nature of stain enhancement are discussed.
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  • 92
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    Electronic Resource
    Weinheim : Wiley-Blackwell
    Electrophoresis 5 (1984), S. 382-383 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 93
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Electrophoresis 5 (1984), S. 383-383 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 94
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Polyacrylamide gels containing immobilized pH gradients (IPGs) are usually extensively washed in deionized water after polymerization and dried when longer storage is required. The original volume of the gel is readjusted by rehydration in water or a solution of appropriate composition and subsequent evaporation, if necessary, by using a fan for weight control. A more convenient procedure is to put the dried gels back into their casting mold used for polymerization and to fill the mold with the appropriate rehydrating solution. Rehydration to the original volume is completed within 30 min for gels of a thickness of 0.5 mm. With gels to be rehydrated in the presence of urea, it was found that water enters the gel matrix faster than urea; consequently, adjustment to the original gel volume at the required urea concentration is not possible in an excess of rehydration solution, but is easily achieved by the modified rehydration procedure. It was also possible to infuse a urea gradient into the gel matrix perpendicular to the pH gradient axis. The effect of urea on the patterns of inherited human prealbumin variants is demonstrated.
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  • 95
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A method of testing batches of ampholytes is presented. By using carbamylated charges standards to co-electrophorese with the protein sample in the first-dimension isoelectric focusing gel, one can monitor, after running and staining the second-dimension sodium dodecyl sulfate (SDS) slabs gel, the continuity of the pH gradient. Charge standards can also be used to check the reproducibility of the pH gradient among batches of ampholytes and to modify the new batch with a small amount of a narrow range ampholyte to assure reproducibility of experiments. Ampholytes for comparison were obtained from three major manufacturers.
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  • 96
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Electrophoresis 2 (1981), S. 135-141 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A color development system for staining polypeptides in one- and two-dimensional polyacrylamide gel electrophoresis is described. The basis of the Process involves the complexing of silver with polypeptides reactive centers. The reaction is initiated by placing a polypeptide-containing gel, previously equilibrated with an appropriate concentration of silver nitrate, into a reducing solution that contains sodium hydroxide, sodium borohydride, and formaldehyde. After an appropriate time in the reducing solution, the gel is equilibrated through two changes of an enhancing solution that contains sodium carbonate. The sodium carbonate is necessary for optimal color appear in the polypeptide -silver complexes after several hours in the enhancing solution and are best appreciated while viewing over a fluorescent light box that radiates light at 5000°K. The color of each polypeptide-silver complex is clearly visible above the light background of the stained polyacrylamide gel. Colors of stained polypeptide are blue, green, yellow, and red. Subtle shades of colors also appear and thereby allow easy discrimination of overlapping spots of polypeptides in a two-dimensional gel. To illustrate the method's relative sensitively, a two-dimensional pattern of human fibroblast polypeptides is compared with patterns of a duplicate gel that is stained with Coomassie Blue and developed by autoradiography. The sensitivity of the silver stain process is superior to Coomassie Blue and is comparable to autoradiography after in corporation of conventional levels of 35S- methionine. The utility of the procedure for identifying and characterizing human proteins is illustrated by staining human proteins is illustrated by staining human plasma and platelet polypeptides after two-dimensional gel electrophoresis. The gel electrophoresis color development system consists of steps that are simple, reproducible, and sensitive, and most importantly, which yield colored polypeptide-silver complexes that are reproducible from gel to gel and tissue to tissue.
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  • 97
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Electrophoresis 2 (1981), S. 148-155 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A double one-dimensional (D 1-D) electrophoretic method for slab gels with polyacrylamide gel electrophoresis (PAGE) followed by polyacrylamide gel isoelectric focusing (PAGIF) is described for the demonstration of prealbumin (PA) from human sera. Almost pure PA is obtained when serum is submitted to Page i an anionic discontinuous (glycine-chloride) buffer system at alkaline pH. After page the Bromophenol Blue-stained tracking dye boundary in the gel containing PA is cut out and the gel strips are overlayed on an isoelectric focusing gel. A final PAGIF pattern of PA is obtained which is hidden by other serum proteins when one-dimensional PAGIF is performed. PAGIF of PA in a gel containing a gradient from 0 to 8 M urea perpendicular to the pH axis reveals the conversion of at least 7 diffuse bands with isoelectric point (pI) values between 4.2 and 4.7 into three sharp zones with pI values of 5.45 for one minor zone and 5.7 for the two other zones lying very close together. Among 1900 sera from adult pregnant women, 2 were found containing a genetically determined PA variant with a pI of 5.9 for a minor and a pI of 6.35 for a more intense zone in addition to the usual pattern. From the variant PAGE and PAGIF patterns and their distribution in the families of the carriers, it is concluded that PA is a tetramer under control of an autosomal structural gene which remains stable during PAGE abut dissociates into the monomers during PAGIF in the presence or presence of urea it is followed that PA under physiological conditions possibly forms complexes with more components than expected from its known binding capacity for thyroxine and retinal binding protein (RBP). This highly resolving K 1-D electrophoretic technique allows the simultaneous analysis of up to 96 samples under identical experimental conditions. It is concluded that PA may be a good candidate for human mutation monitoring at the protein level.
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  • 98
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    Electronic Resource
    Weinheim : Wiley-Blackwell
    Electrophoresis 2 (1981), S. 161-168 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: A simple and versatile optical technique for viewing discontinuities in the thickness of horizontal isoelectric focusing gels is described. The discontinuities in the gel are reproducible and relate directly to the ampholyte distribution. Characterization of the capture of the discontinuities in the gel is presented as well as a demonstration of how they may used for localization of focused proteins.
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  • 99
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Alternative technical solutions of the concentration of protein samples or the recovery of proteins from gel slabs by displacement electrophoresis are demonstrated. The samples are collected at a boundary between high-mobility leading ion and a low-mobility terminating ion either in a small Sephadex G-25 columns or in free solution in a rotating-tube free electrophoresis apparatus. The boundary is kept stationary during electrophoresis by a counter flow of leading solution. Spacers and colored markers can be used to facilitate the collection of the proteins. Investigations showed that electroomosis is a very local phenomenon and that, as expected, the magnitude of the effects depends on the conductivity (field strength) of the solution. This implies that electroomosis will vary among different zones in a discontinuous system (as in displacement electrophoresis). Therefore, in most experiments om free solution it is very advantageous to arrange the system such that electrophoresis does not occur.
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  • 100
    Electronic Resource
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    Weinheim : Wiley-Blackwell
    Electrophoresis 2 (1981), S. 191-191 
    ISSN: 0173-0835
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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