ALBERT

Description: The Denmark Strait Overflow (DSO) contributes roughly half to the total volume transport of the Nordic overflows. The overflow increases its volume by entraining ambient water as it descends into the subpolar North Atlantic, feeding into the deep branch of the Atlantic Meridional Overturning Circulation. In June 2012, a multiplatform experiment was carried out in the DSO plume on the continental slope off Greenland (180 km downstream of the sill in Denmark Strait), to observe the variability associated with the entrainment of ambient waters into the DSO plume. In this study, we report on two high-dissipation events captured by an autonomous underwater vehicle (AUV) by horizontal profiling in the interfacial layer between the DSO plume and the ambient water. Strong dissipation of turbulent kinetic energy of O( math formula) W kg−1 was associated with enhanced small-scale temperature variance at wavelengths between 0.05 and 500 m as deduced from a fast-response thermistor. Isotherm displacement slope spectra reveal a wave number-dependence characteristic of turbulence in the inertial-convective subrange ( math formula) at wavelengths between 0.14 and 100 m. The first event captured by the AUV was transient, and occurred near the edge of a bottom-intensified energetic eddy. Our observations imply that both horizontal advection of warm water and vertical mixing of it into the plume are eddy-driven and go hand in hand in entraining ambient water into the DSO plume. The second event was found to be a stationary feature on the upstream side of a topographic elevation located in the plume pathway. Flow-topography interaction is suggested to drive the intense mixing at this site.

Description: Slope failure like in the Hinlopen/Yermak Megaslide is one of the major geohazards in a changing Arctic environment. We analysed hydroacoustic and 2D high-resolution seismic data from the apparently intact continental slope immediately north of the Hinlopen/Yermak Megaslide for signs of past and future instabilities. Our new bathymetry and seismic data show clear evidence for incipient slope instability. Minor slide deposits and an internally-deformed sedimentary layer near the base of the gas hydrate stability zone imply an incomplete failure event, most probably about 30000 years ago, contemporaneous to or shortly after the Hinlopen/Yermak Megaslide. An active gas reservoir at the base of the gas hydrate stability zone demonstrate that over-pressured fluids might have played a key role in the initiation of slope failure at the studied slope, but more importantly also for the giant HYM slope failure. To date, it is not clear, if the studied slope is fully preconditioned to fail completely in future or if it might be slowly deforming and creeping at present. We detected widespread methane seepage on the adjacent shallow shelf areas not sealed by gas hydrates.

Description: Polymetallic nodule mining at abyssal depths in the Clarion Clipperton Fracture Zone (Eastern Central Pacific) will impact one of the most remote and least known environments on Earth. Since vast areas are being targeted by concession holders for future mining, large-scale effects of these activities are expected. Hence, insight into the fauna associated with nodules is crucial to support effective environmental management. In this study video surveys were used to compare the epifauna from sites with contrasting nodule coverage in four license areas. Results showed that epifaunal densities are more than two times higher at dense nodule coverage (〉25 versus ≤10 individuals per 100 m2), and that taxa such as alcyonacean and antipatharian corals are virtually absent from nodule-free areas. Furthermore, surveys conducted along tracks from trawling or experimental mining simulations up to 37 years old, suggest that the removal of epifauna is almost complete and that its full recovery is slow. By highlighting the importance of nodules for the epifaunal biodiversity of this abyssal area, we urge for cautious consideration of the criteria for determining future preservation zones.

Description: Nitrogen fixation — the reduction of dinitrogen (N2) gas to biologically available nitrogen (N) — is an important source of N for terrestrial and aquatic ecosystems. In terrestrial environments, N2-fixing symbioses involve multicellular plants, but in the marine environment these symbioses occur with unicellular planktonic algae. An unusual symbiosis between an uncultivated unicellular cyanobacterium (UCYN-A) and a haptophyte picoplankton alga was recently discovered in oligotrophic oceans. UCYN-A has a highly reduced genome, and exchanges fixed N for fixed carbon with its host. This symbiosis bears some resemblance to symbioses found in freshwater ecosystems. UCYN-A shares many core genes with the 'spheroid bodies' of Epithemia turgida and the endosymbionts of the amoeba Paulinella chromatophora. UCYN-A is widely distributed, and has diversified into a number of sublineages that could be ecotypes. Many questions remain regarding the physical and genetic mechanisms of the association, but UCYN-A is an intriguing model for contemplating the evolution of N2-fixing organelles.

Description: Methane concentration and isotopic composition was measured in ice-covered and ice-free waters of the Arctic Ocean during 11 surveys spanning the years of 1992–1995 and 2009. During ice-free periods, methane flux from the Beaufort shelf varies from 0.14 mg CH4 m−2 d−1 to 0.43 mg CH4 m−2 d−1. Maximum fluxes from localized areas of high methane concentration are up to 1.52 mg CH4 m−2 d−1. Seasonal buildup of methane under ice can produce short-term fluxes of methane from the Beaufort shelf that varies from 0.28 mg CH4 m−2 d−1 to 1.01 mg CH4 m−2 d−1. Scaled-up estimates of minimum methane flux from the Beaufort Sea and pan-Arctic shelf for both ice-free and ice-covered periods range from 0.02 Tg CH4 yr−1 and 0.30 Tg CH4 yr−1, respectively to maximum fluxes of 0.18 Tg CH4 yr−1 and 2.2 Tg CH4 yr−1, respectively. A methane flux of 0.36 Tg CH4 yr−1 from the deep Arctic Ocean was estimated using data from 1993 to 1994. The flux can be as much as 2.35 Tg CH4 yr−1 estimated from maximum methane concentrations and wind speeds of 12 m/s, representing only 0.42% of the annual atmospheric methane budget of ∼ 560 Tg CH4 yr−1. There were no significant changes in methane fluxes during the time period of this study. Microbial methane sources predominate with minor influxes from thermogenic methane offshore Prudhoe Bay and the Mackenzie River delta and may include methane from gas hydrate. Methane oxidation is locally important on the shelf and is a methane sink in the deep Arctic Ocean.

Description: Chlorophyll (Chl) is a distinctive component of autotrophic organisms, often used as an indicator of phytoplankton biomass in the ocean. However, assessment of phytoplankton biomass from Chl relies on the accurate estimation of the Chl:carbon(C) ratio. Here we present global patterns of Chl:C ratios in the surface ocean obtained from a phytoplankton growth model that accounts for the optimal acclimation of phytoplankton to ambient nutrient, light, and temperature conditions. The model agrees largely with observed/expected global patterns of Chl:C. Combining our Chl:C estimates with satellite Chl and particulate organic carbon (POC), we infer phytoplankton C concentration in the surface ocean and its contribution to the total POC pool. Our results suggest that the portion of POC corresponding to living phytoplankton is higher in subtropical latitudes and less productive regions (∼30–70%) and decreases to ∼10–30% toward high latitudes and productive regions. An important caveat of our model is the lack of iron limiting effects on phytoplankton physiology. Comparison of our predicted phytoplankton biomass with an independent estimate of total POC reveals a positive correlation between nitrate concentrations and nonphotosynthetic POC in the surface ocean. This correlation disappears when a constant Chl:C is applied. Our analysis is not constrained by assumptions of constant Chl:C or phytoplankton:POC ratio, providing a novel independent analysis of phytoplankton biomass in the surface ocean. These results highlight the importance of accounting for the variability in Chl:C and its application in distinguishing the autotrophic and heterotrophic components in the assemblage of the marine plankton ecosystem.

Description: The potential of the diverse chemistries present in natural products (NP) for biotechnology and medicine remains untapped because NP databases are not searchable with raw data and the NP community has no way to share data other than in published papers. Although mass spectrometry (MS) techniques are well-suited to high-throughput characterization of NP, there is a pressing need for an infrastructure to enable sharing and curation of data. We present Global Natural Products Social Molecular Networking (GNPS; http://gnps.ucsd.edu), an open-access knowledge base for community-wide organization and sharing of raw, processed or identified tandem mass (MS/MS) spectrometry data. In GNPS, crowdsourced curation of freely available community-wide reference MS libraries will underpin improved annotations. Data-driven social-networking should facilitate identification of spectra and foster collaborations. We also introduce the concept of 'living data' through continuous reanalysis of deposited data.

Description: Synthetic biology has boomed since the early 2000s when it started being shown that it was possible to efficiently synthetize compounds of interest in a much more rapid and effective way by using other organisms than those naturally producing them. However, to thus engineer a single organism, often a microbe, to optimise one or a collection of metabolic tasks may lead to difficulties when attempting to obtain a production system that is efficient, or to avoid toxic effects for the recruited microorganism. The idea of using instead a microbial consortium has thus started being developed in the last decade. This was motivated by the fact that such consortia may perform more complicated functions than could single populations and be more robust to environmental fluctuations. Success is however not always guaranteed. In particular, establishing which consortium is best for the production of a given compound or set thereof remains a great challenge. This is the problem we address in this paper. We thus introduce an initial model and a method that enable to propose a consortium to synthetically produce compounds that are either exogenous to it, or are endogenous but where interaction among the species in the consortium could improve the production line.

Description: We present an improved neotectonic numerical model of the complex NW Africa-SW Eurasia plate boundary segment that runs from west to east along the Gloria Fault up to the northern Algerian margin. We model the surface velocity field and the ongoing lithospheric deformation using the most recent version of the thin-shell code SHELLS and updated lithospheric model and fault map of the region. To check the presence versus the absence of an independently driven Alboran domain, we develop two alternative plate models: one does not include an Alboran plate; another includes it and determines the basal shear tractions necessary to drive it with known velocities. We also compare two alternative sets of Africa-Eurasia velocity boundary conditions, corresponding to geodetic and geological-scale averages of plate motion. Finally, we perform an extensive parametric study of fault friction coefficient, trench resistance, and velocities imposed in Alboran nodes. The final run comprises 5240 experiments, each scored to geodetic velocities (estimated for 250 stations and here provided), stress direction data, and seismic strain rates. The model with the least discrepancy to the data includes the Alboran plate driven by a basal WSW directed shear traction, slightly oblique to the westward direction of Alboran motion. We provide estimates of long-term strain rates and slip rates for the modeled faults, which can be useful for further hazard studies. Our results support that a mechanism additional to the Africa-Eurasia convergence is required to drive the Alboran domain, which can be related to subduction processes occurring within the mantle.