ALBERT

Description: A multiproxy study of palaeoceanographic and climatic changes in northernmost Baffin Bay shows that major environmental changes have occurred since the deglaciation of the area at about 12 500 cal. yr BP. The interpretation is based on sedimentology, benthic and planktonic foraminifera and their isotopic composition, as well as diatom assemblages in the sedimentary records at two core sites, one located in the deeper central part of northernmost Baffin Bay and one in a separate trough closer to the Greenland coast. A revised chronology for the two records is established on the basis of 15 previously published AMS 14C age determinations. A basal diamicton is overlain by laminated, fossil-free sediments. Our data from the early part of the fossiliferous record (12 300–11 300 cal. yr BP), which is also initially laminated, indicate extensive seasonal sea-ice cover and brine release. There is indication of a cooling event between 11 300 and 10 900 cal. yr BP, and maximum Atlantic Water influence occurred between 10 900 and 8200 cal. yr BP (no sediment recovery between 8200 and 7300 cal. yr BP). A gradual, but fluctuating, increase in sea-ice cover is seen after 7300 cal. yr BP. Sea-ice diatoms were particularly abundant in the central part of northernmost Baffin Bay, presumably due to the inflow of Polar waters from the Arctic Ocean, and less sea ice occurred at the near-coastal site, which was under continuous influence of the West Greenland Current. Our data from the deep, central part show a fluctuating degree of upwelling after c. 7300 cal. yr BP, culminating between 4000 and 3050 cal. yr BP. There was a gradual increase in the influence of cold bottom waters from the Arctic Ocean after about 3050 cal. yr BP, when agglutinated foraminifera became abundant. A superimposed short-term change in the sea-surface proxies is correlated with the Little Ice Age cooling.

Description: Investigations indicate that the Iceland Ice Sheet was reduced in size during MIS 3 but readvanced to the shelf break at the LGM. Retreat occurred very rapidly around 15 k–16 k cal. yr BP. By contrast, the margin of the ice sheet on the East Greenland shelf, north of the Denmark Strait, was at or close to the shelf break during MIS 3 and 2 and retreat starting ∼17 k cal. yr BP. Quantitative X-ray diffraction analysis of the 〈2 mm sediment fraction was undertaken on 161 samples from Iceland and East Greenland diamictons, and from cores on the slopes and margins of the Denmark Strait. Weight% mineralogical data are used in a principal component analysis to differentiate sediments derived from the two margins. The first two PC axes explain 52% of the variance. These associations are used to characterise sediments as being affiliated with (a) Iceland, (b) East Greenland or (c) mixed. The contribution from Iceland becomes prominent during MIS 2. The extensive outcrop of early Tertiary basalts on East Greenland between 68° and 71° N is an alternative source for basaltic clasts and North Atlantic sediments with εNd(0) values close to ±0.

Description: The diet composition of Emperor Penguin Aptenodytes forsteri chicks was examined at Auster and Taylor Glacier colonies, near Australia's Mawson station, Antarctica, between hatching in mid-winter and fledging in mid-summer by “water-offloading” adults. Chicks at both colonies were fed a similar suite of prey species. Crustaceans occurred in 82% of stomach samples at Auster and 87% of stomachs at Taylor Glacier and were heavily digested: their contribution to food mass could not be quantified. Fish, primarily bentho-pelagic species, accounted for 52% by number and 55% by mass of chick diet at Auster, and squid formed the remainder. At Taylor Glacier the corresponding values were 27% by number and 31% by mass of fish and 73% by number and 69% by mass of squid. Of the 33 species or taxa identified, the fish Trematomus eulepidotus and the squid Psychroteuthis glacialis and Allu-roteuthis antarcticus accounted for 64% and 74% of the diets by mass at Auster and Taylor Glacier, respectively. The sizes of fish varied temporally but not in a linear manner from winter to summer. Adult penguins captured fish ranging in length from 60 mm (Pfeura-gramma antarcticum) to 250 mm (T. eulepidotus) and squid (P. glacialis) from 19 to 280 mm in mantle length. The length-frequency distribution of P. glacialis showed seasonal variation, with the size of squid increasing from winter to summer. The energy density of chick diet mix increased significantly prior to “fledging”.

Description: Microbial mats collected at cold methane seeps in the Black Sea carry out anaerobic oxidation of methane (AOM) to carbon dioxide using sulfate as the electron acceptor. These mats, which predominantly consist of sulfate-reducing bacteria and archaea of the ANME-1 and ANME-2 type, contain large amounts of proteins very similar to methyl-coenzyme M reductase from methanogenic archaea. Mass spectrometry of mat samples revealed the presence of two nickel-containing cofactors in comparable amounts, one with the same mass as coenzyme F430 from methanogens (m/z = 905) and one with a mass that is 46 Da higher (m/z = 951). The two cofactors were isolated and purified, and their constitution and absolute configuration were determined. The cofactor with m/z = 905 was proven to be identical to coenzyme F430 from methanogens. For the m/z = 951 species, high resolution ICP-MS pointed to F430 + CH2S as the molecular formula, and LA-ICP-SF MS finally confirmed the presence of one sulfur atom per nickel. Esterification gave two stereoisomeric pentamethyl esters with m/z = 1021, which could be purified by reverse phase HPLC and were subjected to comprehensive NMR analysis, allowing determination of their constitution and configuration as (172S)−172-methylthio-F430 pentamethyl ester and (172R)−172-methylthio-F430 pentamethyl ester. The corresponding diastereoisomeric pentaacids could also be separated by HPLC and were correlated to the esters via mild hydrolysis of the latter. Equilibration of the pentaacids under acid catalysis showed that the (172S) isomer is the naturally occurring albeit thermodynamically less stable one. The more stable (172R) isomer (80% at equilibrium) is an isolation artifact generated under the acidic conditions necessary for the isolation of the cofactors from the calcium carbonate-encrusted mats.

Description: A novel microbially diverse type of 1- to 5-cm-thick mat performing anaerobic oxidation of methane (AOM) and covering several square metres of the seafloor was discovered in the Black Sea at 180 m water depth. Contrary to other AOM-mat systems of the Black Sea these floating mats are not associated to free gas and are not stabilized by authigenic carbonates. However, supply of methane is ensured by the horizontal orientation of the mats acting as a cover of methane enriched fluids ascending from the underlying sediments. Thorough investigation of their community composition by molecular microbiology and lipid biomarkers, metabolic activities and elemental composition showed that the mats provide a clearly structured system with extracellular polymeric substances (EPS) building the framework of the mats. The top black zone, showing high rates of AOM (15 μmol gdw−1 day−1), was dominated by ANME-2, while the following equally active pink layer was dominated by ANME-1 Archaea. The lowest AOM activity (2 μmol gdw−1 day−1) and cell numbers were found in the greyish middle part delimited towards the sediment by a second pink, ANME-1-dominated and sometimes a black outer layer (ANME-2). Our work clearly shows that the different microbial populations are established along defined chemical gradients such as methane, sulfate or sulfide.

Description: The anaerobic oxidation of methane (AOM), by converting methane to bicarbonate which is then precipitated as extensive carbonate crusts, is an important methane sink in the Earth’s ocean systems. Here we employ a multidisciplinary approach to investigate the role of microorganisms in carbonate precipitation using biomarker analysis, scanning electron microscopy (SEM) and X-ray diffraction. We examined two microbial mats from the Black Sea and found that one comprised carbonate in both aragonite and Mg calcite forms and most likely ANME-1 archaea, whereas the other contained only Mg calcite and most likely ANME-2 archaea. We conclude, as have others, that the different microbial communities could impart different influences on carbonate mineralogy and morphology. Although further research is needed, this is a contribution to our understanding of those relationships, which could prove critical in the interpretation of ancient sedimentary deposits.

Description: The Denmark Strait Overflow (DSO) today compensates for the northward flowing Norwegian and Irminger branches of the North Atlantic Current that drive the Nordic heat pump. During the Last Glacial Maximum (LGM), ice sheets constricted the Denmark Strait aperture in addition to ice eustatic/isostatic effects which reduced its depth (today ∼630 m) by ∼130 m. These factors, combined with a reduced north-south density gradient of the water-masses, are expected to have restricted or even reversed the LGM DSO intensity. To better constrain these boundary conditions, we present a first reconstruction of the glacial DSO, using four new and four published epibenthic and planktic stable-isotope records from sites to the north and south of the Denmark Strait. The spatial and temporal distribution of epibenthic δ18O and δ13C maxima reveals a north-south density gradient at intermediate water depths from σ0∼28.7 to 28.4/28.1 and suggests that dense and highly ventilated water was convected in the Nordic Seas during the LGM. However, extremely high epibenthic δ13C values on top of the Mid-Atlantic Ridge document a further convection cell of Glacial North Atlantic Intermediate Water to the south of Iceland, which, however, was marked by much lower density (σ0∼28.1) The north-south gradient of water density possibly implied that the glacial DSO was directed to the south like today and fed Glacial North Atlantic Deep Water that has underthrusted the Glacial North Atlantic Intermediate Water in the Irminger Basin.

Description: Mineral assemblages in volcanic rocks record both pre-eruptive conditions and changes experienced by magma as it rises. Titanomagnetite in andesitic magmas is especially sensitive to changes in temperature and oxygen fugacity immediately prior to and during eruptions. Two end-member eruption states can be distinguished by examining titanomagnetite textures in erupted rocks. Slow-ascent eruptions—characterized by near-stagnant magma bodies and slow effusion of lava domes—show solid-state exsolution of titanohematite/ilmenite lamellae within titanomagnetite hosts. By contrast, fast-ascent eruptions—characterized by rapid chilling of magma in sub-Plinian eruptions—contain titanomagnetites without such exsolution features. This mineralogical distinction is particularly useful in examining very fine-grained distal tephra layers where other characteristic properties of the two eruptions types are not present. Such tephra records in lake deposits typically provide the most precise long-term eruption records from andesitic volcanoes. Using an example from Mount Taranaki, New Zealand, we show that by classifying eruption styles within such sequences, the underlying magmatic system processes at a volcano can be elucidated and separated from other environmental factors such as vent/crater configuration.

Description: The supply of limiting nutrients to the low latitude ocean is controlled by physical processes linked to climate variations, but methods for reconstructing past nutrient concentrations in the surface ocean are few and indirect. Here, we present laser ablation mass spectrometry results that reveal annual cycles of P/Ca in a 4-year record from the scleractinian coral Pavona gigantea (mean P/Ca = 118 μmol mol−1). The P/Ca cycles track variations in past seawater phosphate concentration synchronously with skeletal Sr/Ca-derived temperature variations associated with seasonal upwelling in the Gulf of Panamá. Skeletal P/Ca varies seasonally by 2–3 fold, reflecting the timing and magnitude of dissolved phosphate variations. Solution cleaning experiments on drilled coral powders show that over 60% of skeletal P occurs in intracrystalline organic phases. Coral skeleton P/Ca holds promise as a proxy record of nutrient availability on time scales of decades to millennia.

Description: This Master of Science project report focuses on the benthic respiration processes and the degradation of organic matter in Arctic deep-ocean sediments. The purpose is to estimate the rate by which organic and biogenic matter is degraded and recycled in these sediments. The study was performed during the Arctic expedition ARKXXII/1c onboard the German research vessel Polarstern in July 2007 in the Fram Strait located between Spitsbergen and Greenland. The expedition ARKXXII was a part of the HERMES project, Hotspot Ecosystems Research on the Margins of European Seas, which started in April 2005 with the purpose to get a better understanding of the complex, variable, and in some cases unique ecosystems and environments along the European deep-ocean margins. This is crucial to maintain a sustainable development by reason of increasing exploitation and economical interest of these sites. The measurements were carried out using an autonomous bottom lander and both in-situ measurements as well as water sampling for laboratory work and analysis were performed. The parameters measured in-situ was oxygen concentration (allowing calculation of consumption), conductivity, temperature, salinity and particle content. The water samples were analysed for dissolved inorganic carbon (DIC), dissolved organic carbon (DOC), alkalinity and nutrients. Sediment cores were also taken from four stations, and were used to measure the C and N-content (not discussed in this report) as well as the porosity. Also pore water was extracted from the sediment in which DOC and nutrients were analysed. The three stations on a depth gradient (1200, 2550, 5550 m) occupied with the lander showed low fluxes and degradation rates generally. The highest degradation rates were found at the shallowest station. Also the deepest station showed high rates of organic carbon oxidation. The intermediate depth station is believed to be more oligotrophic with low input of organic matter, resulting in low rates of organic carbon oxidation and fluxes of DIC and oxygen.

Description: Although rising global sea levels will affect the shape of coastlines over the coming decades1, 2, the most severe and catastrophic shoreline changes occur as a consequence of local and regional-scale processes. Changes in sediment supply3 and deltaic subsidence4, 5, both natural or anthropogenic, and the occurrences of tropical cyclones4, 5 and tsunamis6 have been shown to be the leading controls on coastal erosion. Here, we use satellite images of South American mangrove-colonized mud banks collected over the past twenty years to reconstruct changes in the extent of the shoreline between the Amazon and Orinoco rivers. The observed timing of the redistribution of sediment and migration of the mud banks along the 1,500 km muddy coast suggests the dominant control of ocean forcing by the 18.6 year nodal tidal cycle7. Other factors affecting sea level such as global warming or El Niño and La Niña events show only secondary influences on the recorded changes. In the coming decade, the 18.6 year cycle will result in an increase of mean high water levels of 6 cm along the coast of French Guiana, which will lead to a 90 m shoreline retreat.

Description: The kinetics of glauconite dissolution have been determined in the pH range 2–10 (T = 25°C) using flow-batch reactor experiments. Besides the kinetic characteristics, the structural and textural aspects which could influence its long-term reactivity have also been characterized by means of X-ray diffraction (XRD), high-resolution transmission electron microscopy (HRTEM), scanning electron microscopy (SEM) and BET surface area measurements. The results from these analyses showed that glauconite follows a dual dissolution pathway which is pH-dependent, being more stable at neutral or slightly alkaline pH values. Under acidic conditions, glauconite is slightly more soluble than other ubiquitous silicates present in the marine sediments. The dissolution mechanism is incongruent at very acid pH values and tends to be congruent for intermediate and neutral ones. In addition, the results from the structural analyses suggest that the dissolution is a two-step process: the first one involves the disorder of the octahedral and tetrahedral layers, probably following a turbostratic mechanism which is evident in the XRD spectra as selective broadening of several reflections. In the second step, the dissolution of the cations from interlayer positions takes place and leads to the formation of an amorphous residue which acts as a passivating layer and reduces the reactive surface considerably. The influence of these aspects on CO2 capture via carbonation reactions is discussed.

Description: In several fields of cell biology, correlative microscopy is applied to compare the structure of objects at high resolution under the electron microscope with low resolution light microscopy images of the same sample. It is, however, difficult to prepare samples and marker systems that are applicable for both microscopic techniques for the same specimen at the same time. In our studies, we used microbial mats from Cold Seep communities for a simple and rapid correlative microscopy method. The mats consist of bacterial and archaeal microorganisms, coupling reverse methanogenesis to the reduction of sulfate. The reverse methanogenic pathway also generates carbonates that precipitate inside the mat and may be the main reason for the formation of a microbial reef. The mat shows highly differentiated aggregates of various organisms, tightly interconnected by extracellular polysaccharides. In order to investigate the role of EPS as adhesive mucilage for the biofilm and as a precipitation matrix for carbonate minerals, samples were embedded in a hydrophilic resin (Lowicryl K4 M). Sections were suitable for light as well as electron microscopy in combination with lectins, either labeled with a fluorescent marker or with colloidal gold. This allows lectin mapping at low resolution for light microscopy in direct comparison with a highly resolved electron microscopic image.

Description: The bacterial strain Gp_4_7.1T, isolated from the marine sponge Isops phlegraei collected at the Sula Ridge off the Norwegian coast, was characterized. The isolate was a motile spirillum that was monopolarly and monotrichously flagellated. It was aerobic, Gram-negative, oxidase-positive and catalase-negative. Optimal growth occurred between 20 and 30 °C, at pH 7–8 and with a salt concentration of 2–3 % (w/v). The isolate showed a relatively restricted nutritional profile. Substrate utilization tests were only positive for arabinose. Enzyme tests were positive for esterase lipase C8, lipase C14, leucine arylamidase and naphthol-AS-BI-phosphohydrolase. The strain was not able to reduce nitrate. The major cellular fatty acids were C16 : 1 ω7 and C16 : 0. The DNA G+C content was 62.6 mol%. Phylogenetic analysis based on 16S rRNA gene sequence comparison classified the strain as a member of the order Oceanospirillales in the class Gammaproteobacteria. Strain Gp_4_7.1T formed a distinct phyletic line with less than 94 % 16S rRNA gene sequence similarity to its closest relatives with validly published names. Based on the determined data, it is proposed that the strain represents a novel species in a new genus, Spongiispira norvegica gen. nov., sp. nov.; the type strain of Spongiispira norvegica is Gp_4_7.1T (=DSM 17749T =NCIMB 14401T).

Description: Samples collected from the shelf-edge wedge using surface grab samples and the Jago submersible constrain the KwaZulu-Natal shelf-edge wedge to a late Pliocene age on the basis of the absence of Gephyrocapsa oceanica s.l. and Discoaster brouweri, and the presence of Calcidiscus macintyrei. This correlates with proposed Tertiary sea-level curves for southern Africa and indicates relative sea-level fall during the late Pliocene coupled with hinterland uplift. Exposed failure scarps in the upper portions of submarine canyons yield sediment samples of early Pleistocene ages, indicating the uppermost age of deposition of clinoform topsets exposed in the scarp walls. Partially consolidated, interbedded silty and sandy deposits of similar age outcrop in the thalweg of Leven canyon at a depth of 150 m. These sediments provide an upper age limit of the shelf-edge wedge of early Pleistocene, giving a sedimentation rate of this wedge of 162–309 m/Ma. The distribution of widespread basal-most Pleistocene sediments on the upper slope indicates that these sediments escaped major reworking during sea-level falls associated with Pleistocene glaciations and remain as relict upper slope veneers. The absence of more recent sediments suggests that this area has been a zone of sediment bypass or starvation since the early Pleistocene. Areas where younger sediments mantle deposits of early Pleistocene ages represent areas of offshore bedload parting, re-distributing younger Holocene sediment offshore and downslope.

Description: This paper considers the quantitative implications of out-of-focus regions on the lateral and depth resolution of Raman microscopy, with special regard for the surface specificity of the technique. It builds on work that has recently appeared in the literature which shows that with transparent samples, signals can originate throughout a large extended illumination volume, even though most of this region is out of focus with regard to the confocal aperture. This gives rise to weak but readily detectable spectral contributions from regions that are tens of micrometers from the point of tightest focus, an effect that is easily demonstrated if the laser is focused far above the sample surface. When we integrate the signals arising throughout this extended volume, the resulting total signal can be significant with respect to the Raman signals originating from the point of focus; this has obvious implications for surface specificity and depth resolution. Furthermore, as one moves the focal point through and above a sample surface, signals from thick transparent samples decay relatively slowly compared with thin or opaque ones, where the extended focal volume is irrelevant. This means that on moving above the surface of a thinly coated thick substrate during a confocal axial scan, the substrate-to-coating signal ratio increases dramatically, contrary to intuition. Consequently, confusing spectral artifacts arise if one focuses above the sample surface, either inadvertently when mapping an uneven sample, or deliberately in an attempt to improve surface specificity. In this work we show how a simple analytical model can predict the surface/substrate signal ratio as a function of distance above the surface. The model is validated using experimental data from monofilms and coated films. Furthermore, we show how this effect is not limited to the confocal axial profiling geometry. Similar effects are obtained when one scans laterally beyond the edge of mechanically prepared cross-sections due to an extended, out-of-focus laser field that can sample lateral regions far to the side of the optimum focus. This effect can lead to very confusing results, such as spectra from the substrate increasing in absolute intensity as one moves beyond the edge of the coating into the air. These observations, which as far as we are aware have not previously been reported, are rationalized using a simple ray-tracing description, which shows the potential for coupling light into the cross-section, which acts as a waveguide. These effects have a completely different origin than the well-known anomalies that are introduced by refraction and spherical aberration; even with a perfect, aberration-free system, the extended focal volume may cause significant degradation in depth resolution. Although the effects have been demonstrated with simple film systems, they have the potential to impact the results from Raman mapping and imaging of any samples that contain significant refractive index discontinuities, which can potentially cause refraction and waveguiding, or that have compositional depth gradients and an uneven sample surface.

Description: We examined the physiological responses of steady-state iron (Fe)-replete and Fe-limited cultures of the biogeochemically critical marine unicellular diazotrophic cyanobacterium Crocosphaera at glacial (19 Pa; 190 ppm), current (39 Pa; 380 ppm), and projected year 2100 (76 Pa; 750 ppm) CO2 levels. Rates of N2 and CO2 fixation and growth increased in step with increasing partial pressure of CO2 (pCO2), but only under Fe-replete conditions. N2 and carbon fixation rates at 75 Pa CO2 were 1.4-1.8-fold and 1.2-2.0-fold higher, respectively, relative to those at present day and glacial pCO2 levels. In Fe-replete cultures, cellular Fe and molybdenum quotas varied threefold and were linearly related to N2 fixation rates and to external pCO2. However, N2 fixation and trace metal quotas were decoupled from pCO2 in Fe-limited Crocosphaera. Higher CO2 and Fe concentrations both resulted in increased cellular pigment contents and affected photosynthesis vs. irradiance parameters. If these results also apply to natural Crocosphaera populations, anthropogenic CO2 enrichment could substantially increase global oceanic N2 and CO2 fixation, but this effect may be tempered by Fe availability. Possible biogeochemical consequences may include elevated inputs of new nitrogen to the ocean and increased potential for Fe and/or phosphorus limitation in the future high-CO2 ocean, and feedbacks to atmospheric pCO2 in both the near future and over glacial to interglacial timescales.

Description: The four naturally-occurring radium isotopes (223Ra, 224Ra, 226Ra and 228Ra) were used to estimate the submarine groundwater discharge (SGD) in the Isola La Cura marsh area in the northern Venice Lagoon (Italy). By determining the radium contributors to the study area (river, coastal ocean and sediments) the radium excess in the lagoon water was quantified through a mass balance model. This radium excess is attributed to a submarine groundwater discharge source and represents the most important input of radium. Possible endmembers were considered from analysis of groundwater samples (subtidal and marsh piezometers, marsh wells and seepage meters) that were enriched in Ra by one to two orders of magnitude relative to surface waters. In particular, a permeable layer at 80 cm depth in the surrounding marsh is considered to be representative of the most likely SGD source, although similar radium activities were measured in other subtidal porewater samples collected in the Isola La Cura area. The estimated SGD flux to the study area ranged from 1 · 109 to 6 · 109 L·d− 1, the same order of magnitude as the overall riverine input to the lagoon (3 · 109 L·d− 1). A major fraction of this SGD flux is likely recirculated seawater, as evidenced by the endmember salinity. The water residence time of 2 days was estimated by both using the shortest-lived radium isotope and estimating the volume of water exchanged between the lagoon and the open sea during a tidal cycle (tidal prism approach). This SGD flux could be used to estimate the input of other chemical species (metals, nutrients, etc.) via SGD which might affect the Venice Lagoon ecosystem.

Description: [1] While recent studies have confirmed the ecological importance of vitamin B12, it is unclear whether the production of this vitamin could be limited by dissolved Co, a trace metal required for B12 biosynthesis, but found at only subnanomolar concentrations in the open ocean. Herein, we demonstrate that the spatial distribution of dissolved B12 (range: 0.13–5 pmol L−1) in the North Atlantic Ocean follows the abundance of total dissolved Co (range: 15–81 pmol L−1). Similar patterns were observed for bacterial productivity (range: 20–103 pmol 3H leucine L−1 hr−1) and algal biomass (range: 0.4–3.9 μg L−1). In contrast, vitamin B1 concentrations (range: 0.7–30 pM) were decoupled from both Co and B12 concentrations. Cobalt amendment experiments carried out in low-dissolved Co waters (∼20 pmol L−1) enhanced B12 production two-fold over unamended controls. This study provides evidence that B12 synthesis could be limited by the availability of Co in some regions of the world ocean.

Description: We present the first comprehensive investigation of the concentrations, fluxes and sources of aerosol trace elements over the Gulf of Aqaba. We found that the mean atmospheric concentrations of crustally derived elements such as Al, Fe and Mn (1081, 683, and 16.7 ng m�3) are about 2–3 times higher than those reported for the neighboring Mediterranean area. This is indicative of the dominance of the mineral dust component in aerosols over the Gulf. Anthropogenic impact was lower in comparison to the more heavily populated areas of the Mediterranean. During the majority of time (69%) the air masses over the Gulf originated from Europe or Mediterranean Sea areas delivering anthropogenic components such as Cu, Cd, Ni, Zn, and P. Airflows derived from North Africa in contrast contained the highest concentrations of Al, Fe, and Sr but generally lower Cu, Cd, Ni, Zn, and P. Relatively high Pb, Ni, and V were found in the local and Arabian airflows suggesting a greater influence of local emission of fuel burning. We used the data and the measured trace metal seawater concentrations to calculate residence times of dissolved trace elements in the upper 50 m surface water of the Gulf (with respect to atmospheric input) and found that the residence times for most elements are in the range of 5–37 years while Cd and V residence times are longer.

Description: There is increasing evidence that submarine groundwater discharge (SGD) in many areas represents a major source of dissolved chemical constituents to the coastal ocean. In Great South Bay, NY, previous studies have shown that the discharge of nutrients with SGD may cause harmful algal blooms. This study estimates SGD to Great South Bay during August 2006 by performing a mass balance for each of the dissolved Ra isotopes (224Ra, 223Ra, 228Ra, 226Ra). The budget indicates a major unknown source (between 30 and 60% of the total input) of Ra to the bay. This imbalance can be resolved by a flux of Ra-enriched groundwater on the order of 3.5–4.5 × 109 L d− 1, depending on the Ra isotope. The Ra-estimated SGD rates compare well with those previously estimated by models of flow that decreases exponentially away from shore. Compared to previous reports of fresh groundwater discharge to the bay, the Ra-estimated discharge must comprise approximately 90% recirculated seawater. The good agreement between Ra- and model-estimated flow rates indicates that the primary SGD endmember may be best sampled at shallow depths in the sediments a short distance bayward of the low tide line.

Description: A major part of the cubozoan central nervous system is situated in the eye-bearing rhopalia. One of the neuronal output channels from the rhopalia carries a swim pacemaker signal, which has a one-to-one relation with the swim contractions of the bell shaped body. Given the advanced visual system of box jellyfish and that the pacemaker signal originates in the vicinity of these eyes, it seems logical to assume that the pacemakers are modified by the visual input. Here, the firing frequency and distribution of inter-signal intervals (ISIs) of single pacemakers are examined in the Caribbean box jellyfish, Tripedalia cystophora. It is shown that the absolute ambient light intensity, if kept constant, has no influence on the signal, but if the intensity changes, it has a major impact on both frequency and ISIs. If the intensity suddenly drops there is an increase in firing frequency, and the ISIs become more homogeneously distributed. A rise in intensity, on the other hand, produces a steep decline in the frequency and makes the ISIs highly variable. These electrophysiological data are correlated with behavioral observations from the natural habitat of the medusae.

Description: The Cretaceous is a special episode in the history of the Earth named for a unique rock type, chalk. Chalk is similar to modern deep-sea calcareous ooze and its deposition in epicontinental seas occurred as these areas became an integral part of the ocean. The shelf-break fronts that today separate inshore from open-ocean waters cannot have existed during the Late Cretaceous probably because the higher sea level brought the base of the wind-mixed Ekman layer above the sea floor on the continental margins. A second peculiarity of the Cretaceous is its warm equable climate. Tropical and polar temperatures were warmer than today. Meridional and ocean-continent temperature gradients were lower. The warmer climate was a reflection of higher atmospheric levels of greenhouse gasses, CO2 and possibly CH4, reinforced by higher water vapor content in response to the warmer temperatures. Most of the additional energy involved in the meridional heat transport system was transported as latent heat of vaporization of H20 by the atmosphere. Poleward heat transport may have been as much as 1 Petawatt (20%) greater than it is today. C3 plants provided for more efficient energy transport into the interior of the continents. Circulation of the Cretaceous ocean may have been very different from that of today. It is impossible for large areas of the modern ocean to become anoxic, but episodes of local anoxia occurred during the earlier Cretaceous and became regional to global during the middle of the Cretaceous. The present ocean structure depends on constant wind systems, which in turn depend on stability of the atmospheric pressure systems forced by polar ice. During most of the Cretaceous the polar regions were ice free. Without polar ice there were seasonal reversals of the high-latitude atmospheric pressure systems, resulting in disruption of the mid- and high latitude wind systems. Without constant mid-latitude westerly winds, there would be no subtropical and polar fronts in the ocean, no well-developed ocean pycnocline, and no tropical subtropical gyres dominating ocean circulation. Instead the ocean circulation would be accomplished through mesoscale eddies which could carry warmth to the polar regions. Greater knowledge and understanding of the Cretaceous is critical for learning how the climate system operates when one or both polar regions are ice free.

Description: This first quantitative study of the diet of Emperor penguins is based on 29 stomach contents collected with a water off-loading method in Adelie Land. The Emperor is largely ichthyophagous (65% by number and 95% by weight) and feeds extensively on small nototheniids (97% of the fish are 40–125 mm in overall length). These results and data on meal size and feeding frequency of the chick suggest that Emperors are off-shore foraging birds offering little competition for food with other sea-birds or mammals.

Description: The diet of King Penguins Aptenodytes patagonicus at Macquarie Island was studied between November 1984 and November 1985 based on stomach flushed samples (obtaining 93% of the total stomach content) from ten birds each month. The mean stomach content mass of the 118 samples was 923 0 g. Percentage by number, percentage by weight and dietary coefficient analysis all showed the main prey of the penguins to be myctophid lantern fish of the species Electrona carlsbergi and Krefftichthys anderssoni. Juvenile fish of both species were eaten from December to July, and adults in August and September. Cephalopods were relatively unimportant in contrast to previous indications. The amount of food brought ashore and the composition of the diet varied over the year, with K. anderssoni the dominant food in all but the winter months when E. carlsbergi replaced it as the principal food item.

Description: In the past decade, a major trawl fishery for the squid Loligo gahi has developed in the vicinity of Beauchêne Island, an internationally important breeding site for the Black-browed Albatross Diomedea melanophris. The breeding season diet of this albatross in the Falklands and its use of discards generated by the Loligo fishery were investigated. Albatross chicks are fed extensively on commercially exploited species of squid and fish including Loligo gahi and southern blue whiting Micromesistius australis. The quantity of waste generated by the Loligo fishery amounts to c. 5% of the reported catch and just over 50% of this waste, mainly Loligo and nototheniid fish, is scavenged by adult Black-browed Albatrosses. The total quantity scavenged during the chick rearing period amounts to 1000–2000 tonnes per year. This is equivalent to 10–15% of the total food requirement of the breeding Black-browed Albatross population on Beauchene Island during the period when the fishery is operating. Although the Loligo fishery currently provides a significant quantity of food to these albatrosses, its net effect may be detrimental to them, as it is a much greater predator of Loligo stocks than the albatrosses are estimated to have been prior to the fishery's development.

Description: Particulate (POM) and dissolved organic matter (DOM) released by the cold water corals Lophelia pertusa (L.) and Madrepora oculata (L.) was collected, analysed and quantitatively compared to that released by warm water reef-building corals. Particulate nitrogen (PN) and particulate organic carbon (POC) release rates of L. pertusa were 0.14 ± 0.07 mg N m–2 h–1 and 1.43 ± 1.22 mg C m–2 h–1, respectively, which is in the lower range of POM release rates measured for warm water corals, while dissolved organic carbon (DOC) release was 47 ± 19 mg C m–2 h–1. The resulting high DOC:POC ratio indicates that most cold water coral-derived organic matter immediately dissolved in the water column. Cold water corals, similar to their warm water counterparts, produced large amounts of nitrogen-rich coral mucus with C:N ratios of 5 to 7 for Lophelia- and 7 to 9 for Madrepora-derived mucus. A 7-fold increase in the oxygen consumption rates in cold water coral mucus-amended seawater containing the natural microbial assemblage indicates that this organic matter provided an attractive food source for pelagic microbes. In situ investigations at Røst Reef, Norway, showed that microbial activity in the seawater closest to the reef was 10 times higher than in the overlying water column. This suggests that cold water corals can stimulate microbial activity in the direct reef vicinity by the release of easily degradable and nutrient-rich organic matter, which may thereby function as a vector for carbon and nutrient cycling via the microbial loop in cold water coral reef systems.

Description: Sections of the lateral line organ, primary and secondary blood vessels and skin from the Atlantic cod Gadus morhua, Linnaeus 1758, were examined by light and transmission electron microscopy (TEM). The lateral line organ showed a structural analogy to the semicircular canals of the mammalian inner ear. A pericanalicular sinus (PCS), a canal of very loose connective tissue, surrounded the lateral line canal (LLC), separated by a multilayered epithelial wall. Located dorsal and ventral to the lateral line organ secondary vessels of capillary dimensions were found in association with the PCS. TEM of the wall of these dorso-ventral vessels showed single tight junction contacts between the endothelial cells, allowing paracellular fluid exchange between the secondary vascular system and the PCS, an indication supported by horseradish peroxidase (HRP) tracer experiments, which showed reaction products in the PCS within 2 h after injecting HRP into the systemic circulation. The multilayered epithelial wall of the LLC showed multiple tight junctions between cells, making this boundary permeable only through transcellular transport.

Description: A freshwater magnesium hydroxide coprecipitation method (MAGIC) has been developed to accurately and reproducibly determine low (nanomolar to subnanomolar) soluble reactive phosphorus (SRP) concentrations in freshwater. The method allows investigation of phosphorus distributions and cycling for systems in which SRP is below the detection limits of conventional methods. In natural waters, both inorganic and organic forms of P are coprecipitated; hence the method is essentially a preconcentration rather than a separation technique. Quantification of SRP on dissolved MAGIC precipitates follows a modified version of the standard molybdenum blue colorimetric method, using a spectrophotometer with ~0.1 milliabsorbance (mAbs) noise. Detection limit is 0.15 nM, improving on typical conventional colorimetric methods by a factor of ~50, with precision (RSD of triplicates) of ~10% at the 1 nM SRP level, 10% at ≤0.5 nM, and 4% to 7% at 〉1 nM. Considerable method development was necessary to eliminate or correct for multiple interferences, including a novel finding of potential interference by colored dissolved organic matter, and to optimize recovery, precision, and detection limit. The method was applied to filtered, frozen samples from western Lake Superior, showing that SRP concentrations are characterized by limited seasonal variability, largely uniform vertical distribution, and near-bottom enrichment. Concentrations ranged from 0.4 to 10.9 nM SRP, representing ~10% of the total dissolved phosphorus pool. MAGIC is an easily employed analytical method appropriate for measurement of very low SRP in lakes and rivers.

Description: In this study, the effects of cementation on the stress–dilatancy and strength of cemented sand are investigated through experimental characterizations using triaxial tests and numerical simulations using the discrete element method. At small strains, dilatancy is hindered by the intact bonding network that produces a web-patterned force chain. After yielding, the increase in the dilatancy accelerates. Two competing but intimately related processes determine the peak strength: Bond breakages cause a strength reduction but the associated dilatancy leads to a strength increase. This finding and the experimental observation that the dilatancy at the peak state increases with increasing cement content explain why the measured peak-state strength parameters, c′ and ϕ′p, are relevant to the cement content. With increasing strain, the force-chain distribution gradually changes to a thick columnar shape, which mostly appears inside the shear band. At the ultimate state, the cementing bonds remain to form clusters, even within the shear band. The existence of clusters not only helps maintain the overall volumetric dilation but also prevents force-chain buckling, which in turn increases the associated strength.

Description: Strain HAL40bT was isolated from the marine sponge Haliclona sp. 1 collected at the Sula Ridge off the Norwegian coast and characterized by physiological, biochemical and phylogenetic analyses. The isolate was a small rod with a polar flagellum. It was aerobic, Gram-negative and oxidase- and catalase-positive. Optimal growth was observed at 20–30 °C, pH 7–9 and in 3 % NaCl. Substrate utilization tests were positive for arabinose, Tween 40 and Tween 80. Enzyme tests were positive for alkaline phosphatase, esterase lipase (C8), leucine arylamidase, acid phosphatase, naphthol-AS-BI-phosphohydrolase and N-acetyl-β-glucosaminidase. The predominant cellular fatty acid was C17 : 1 ω8, followed by C17 : 0 and C18 : 1 ω7. Analysis by matrix-assisted laser desorption/ionization time-of-flight MS was used to characterize the strain, producing a characteristic low-molecular-mass protein pattern that could be used as a fingerprint for identification of members of this species. The DNA G+C content was 69.1 mol%. Phylogenetic analysis supported by 16S rRNA gene sequence comparison classified the strain as a member of the class Gammaproteobacteria. Strain HAL40bT was only distantly related to other marine bacteria including Neptunomonas naphthovorans and Marinobacter daepoensis (type strain sequence similarity 〉90 %). Based on its phenotypic, physiological and phylogenetic characteristics, it is proposed that the strain should be placed into a new genus as a representative of a novel species, Spongiibacter marinus gen. nov., sp. nov.; the type strain of Spongiibacter marinus is HAL40bT (=DSM 17750T =CCUG 54896T).

Description: In 1991 the population size of the coelacanth ( Latimeria chalumnae) on Grande Comore Island, Western Indian Ocean, was estimated at 230–650 individuals, based on counts of individually recognized fish in an 8-km stretch of coastline. This census area represents about 9% of the total suitable habitat at the island. Counts in the same area in 1994 indicated a reduction of sighted coelacanths of about 30%. Additional surveys in 1995 suggested a total coelacanth population of less than 300 individuals. The local artisanal fishery is probably responsible for the observed decline. The survival of the coelacanth seems to be severely threatened if fishing pressure is not reduced. Conservation measures should focus on providing local fishermen with fishing alternatives.

Description: Control of lacustrine phytoplankton biomass by phosphorus is one of the oldest and most stable paradigms in modern limnology. Even so, evidence from bioassays conducted by multiple investigators at numerous sites over the last three decades shows that N is at least as likely as P to be limiting to phytoplankton growth. A number of important flaws in the evidence supporting the phosphorus paradigm have contributed to an unrealistic degree of focus on phosphorus as a controlling element. These include insufficient skeptism in interpretation of: 1) the phosphorus: chlorophyll correlation in lakes, 2) the results of whole-lake fertilization experiments, and 3) stoichiometric arguments based on total N:total P ratios for inland waters. A new paradigm based on parity between N and P control of phytoplankton biomass in lakes seems more viable than the P paradigm. The new paradigm renews interest in the degree to which plankton communities are molded in composition by small differences in relative availability of N and P, the mechanisms that lead to a high frequency of N limitation in oligotrophic lakes, and the failure of aquatic N-fixers to compensate significantly for N deficiency under most conditions. A new N/P paradigm still must acknowledge that suppression of P loading often will be the most effective means of reducing phytoplankton biomass in eutrophic lakes, even if N is initially limiting.

Description: Blennolides A–G (2–8), seven unusual chromanones, were isolated together with secalonic acid B (1) from Blennoria sp., an endophytic fungus from Carpobrotus edulis. This is the first reported isolation of the blennolides 2 and 3 (hemisecalonic acids B and E), the existence of which as the monomeric units of the dimeric secalonic acids had long been postulated. A compound of the proposed structure 4 (β-diversonolic ester) will need to be revised, as its reported data do not fit those of the established structure of blennolide C (4). Other monomers, the blennolides D–F (5–7) seem to be derived from blennolides A (2) and B (3) by rearrangement of the hydroaromatic ring. The heterodimer 8, composed of the monomeric blennolide A (2) and the rearranged 11-dehydroxy derivative of blennolide E (6), extends the ergochrome family with an ergoxanthin type of skeleton. The structures of the new compounds were elucidated by detailed spectroscopic analysis and further confirmed by an X-ray diffraction study of a single crystal of 2. The absolute configurations were determined by TDDFT calculations of CD spectra, including the solid-state CD/TDDFT approach. Preliminary studies showed strong antifungal and antibacterial activities of these compounds against Microbotryum violaceum and Bacillus megaterium, respectively. They were also active against the alga Chlorella fusca and the bacterium Escherichia coli.

Description: A new version of SODA, which covers the time period 1958–2005, is used to analyze decadal variability of the Pacific Subtropical Cell (STC) circulation. The analysis is based on transport time series across 9°S and 9°N. At the interannual time scale, STC convergence anomalies decrease during El Niños and increase during La Niñas through Sverdrup transport convergence changes. At decadal time scales, the assimilation shows a reduction of interior STC convergence of about 8 Sv from the 1960s to the 1990s and a subsequent rebound into the early 2000s by a similar amount, in agreement with the STC tendencies reported earlier from geostrophic section analysis, and associated with the occurrence and intensity of ENSO events among the decades analyzed. The results are compared with, and differ significantly from, those obtained by the German ECCO (GECCO) assimilation.

Description: Laboratory experiments were carried out in a seawater mesocosm tank to investigate the influence of marine phytoplankton growth on air bubble residence time (BRT). Air bubbles of 10–1000 μm in diameter were injected by flushing a water jet into the top of the tank and BRT was determined acoustically. The tank was filled with seawater containing a natural phytoplankton population and growth stimulated by irradiating with artificial fluorescent light. A second experiment was conducted using a monoculture of the diatom Cylindrotheca closterium. BRT and several phytoplankton growth-related parameters (chlorophyll concentration, dissolved inorganic nutrients, dissolved organic carbon (DOC), oxygen saturation and bacteria numbers) as well as the water viscosity were monitored over periods of up to 24 days. BRT showed a statistically significant covariation with oxygen saturation (r = 0.69, α = 0.01 for natural phytoplankton; r = 0.93, α = 0.01 for the Cylindrotheca closterium) and chlorophyll concentration (r = 0.69, α = 0.05 natural phytoplankton; r = 0.76, α = 0.01 Cylindrotheca closterium) during phytoplankton growth periods. Increases in BRT of a factor 〉2 were found during the chlorophyll maximum, when the water was sufficiently supersaturated with oxygen (~〉110%). No clear relationship was evident between BRT and measurements of DOC or water viscosity. Model experiments with highly oxygen-supersaturated water and artificial polysaccharide compounds indicated that oxygen supersaturation alone is not the main factor causing increased BRT during phytoplankton growth, but it is most likely a combination of the degree of gas saturation and the composition of the organic exudates derived from the microalgal population.

Description: The Upper Rhine Graben has two Plio-Quaternary depocentres usually interpreted as resulting from tectonic reactivation. The southern basin, near Freiburg im Breisgau (Germany), contains up to 250 m of sediments. Beneath the younger alluvial deposits related to the current drainage system, a former river network deeply entrenched in the substratum reveals a very low regional base level of early Pleistocene age. The offset of channels at faults allows us to infer a Pleistocene reactivation of the syn-rift fault pattern and the estimation of slip rates. Maximum vertical movements along the faults have not exceeded 0.1 mm/yr since the middle Pleistocene. Current activity is concentrated along the westernmost faults. Morphologic markers indicate late Pleistocene reactivation of the Rhine River fault, and geophysical prospecting suggests a near-surface offset of young sedimentary deposits. The size of the fault segments potentially reactivated suggests that earthquakes with magnitude larger than Mw=6.3Mw=6.3 could be expected in the area with a return interval of about 8000 years. Extrapolated to the duration of the Plio-Pleistocene, the strain rate estimates reveal that the tectonic forcing may account for only one-third to one-half of the whole thickness of the Plio-Pleistocene sediments of the basin fill. Thus other processes must be invoked to understand the growth of the Plio-Pleistocene basin. Especially the piracy of the Rhine River to the north during the early Pleistocene could explain these effects.

Description: It is highly debated whether global warming contributed to the strong hurricane activity observed during the last decade. The crux of the recent debate is the limited length of the reliable instrumental record that exacerbates the detection of possible long-term changes in hurricane activity, which naturally exhibits strong multidecadal variations that are associated with the Atlantic Multidecadal Oscillation (AMO). The AMO, itself a major mode of climate variability, remains also poorly understood because of limited data. Here, we present the first coral-based proxy record (δ18O) that clearly captures multidecadal variations in the AMO and the hurricane activity. Our record, obtained from a brain coral situated in the Atlantic hurricane domain, is equally sensitive to variations in sea surface temperature (SST) and seawater δ18O, with the latter being strongly linked to precipitation, by this means amplifying large-scale climate signals in coral δ18O. The SST and precipitation signals in the coral provide the longest, thus far, continuous proxy-based record of hurricane activity that interestingly exhibits a long-term increase over the last century. As multidecadal SST variations in this region are closely related to the AMO, this study raises new possibilities to extend the limited observations and to gain new insights into the mechanisms underlying the AMO and long-term hurricane variations.

Description: European eel (Anguilla anguilla) elvers were intraperitoneally injected with different doses of 3,3′,4,4′-tetrachlorobiyphenyl (PCB77) to examine and characterize the inductive effect of coplanar PCBs on CYP1A1 gene expression in liver and gills by using a semi-quantitative RT-PCR analysis. The influence of PCB77 injection on transcription activity of the housekeeping gene glyceraldehyde-3-phosphate-dehydrogenase (GAPDH) was tested to determine its suitability as a reference gene for further quantitative gene expression analyses. Our results clearly indicate a significant dose-dependent increase in CYP1A1 gene expression in the gills of European eel, while in liver tissues a significant elevation in CYP1A1 gene expression was only detectable at highest contamination rates, indicating the potential of CYP1A1 differential gene expression analysis in gills as a biomarker for PCB contamination in eels. PCB77 contamination did not affect GAPDH transcription in gills but, at highest doses, resulted in a significant elevation in liver, speaking against GAPDH as a reference housekeeping gene after PCB exposure.

Description: Feeding success is a key factor for larval growth and survival, and is highly dependent on small-scale processes which occur during the predator-prey interaction. We studied the feeding mechanisms involved in the capture success of the European whitefish (Coregonus lavaretus) larvae using video recordings. The successful predatory sequence of this species consists of the following 5 events: encounter, pursuit (including fixation), strike, capture and ingestion. C. lavaretus larvae can exhibit an “S” shaped posture and always strikes on its prey from beyond. The mean fixation distance for wild larvae was 1.75 ± 0.71 mm and for reared larvae was 1.65 ± 0.76 mm. This distance was significantly different between failed and successful snaps, and seemed to be an important parameter to the capture success of C. lavaretus larvae. The analysis of the complexity in predator’s swimming path showed that more convoluted approaches are less likely to lead to a fruitful atta

Description: Geochemical, biomarker, and isotopic evidence suggests that the end-Permian was characterized by extreme oceanic anoxia that may have led to hydrogen sulfide buildup and mass extinction. We use an earth system model to quantify the biogeochemical and physical conditions necessary for widespread oceanic euxinia and hydrogen sulfide release to the atmosphere. Greater than threefold increases in ocean nutrient content combined with nutrient-trapping ocean circulation cause surface-water H2S accumulation in the paleo–Tethys Ocean and in areas of strong upwelling. Accounting for the presence of sulfide-oxidizing phototrophs in the model suppresses but does not prevent widespread release of H2S to the atmosphere. Evidence from the geologic record is consistent with modeled geochemical distributions of widespread nutrient-induced euxinia during the end-Permian, suggesting H2S toxicity and hypercapnia may have provided the kill mechanism for extinction.

Description: Sediments of upwelling regions off Namibia, Peru, and Chile contain dense populations of large nitrate-storing sulfide-oxidizing bacteria, Thiomargarita, Beggiatoa, and Thioploca. Increased contents of monounsaturated C16 and C18 fatty acids have been found at all stations studied, especially when a high density of sulfide oxidizers in the sediments was observed. The distribution of lipid biomarkers attributed to sulfate reducers (10MeC16:0 fatty acid, ai-C15:0 fatty acid, and mono-O-alkyl glycerol ethers) compared to the distribution of sulfide oxidizers indicate a close association between these bacteria. As a consequence, the distributions of sulfate reducers in sediments of Namibia, Peru, and Chile are closely related to differences in the motility of the various sulfide oxidizers at the three study sites. Depth profiles of mono-O-alkyl glycerol ethers have been found to correlate best with the occurrence of large sulfide-oxidizing bacteria. This suggests a particularly close link between mono-O-alkyl glycerol ether-synthesizing sulfate reducers and sulfide oxidizers. The interaction between sulfide-oxidizing bacteria and sulfate-reducing bacteria reveals intense sulfur cycling and degradation of organic matter in different sediment depths.

Description: This chapter describes a range of quantitative tools that can be applied to ultrathin sections of biological material. The transmission electron microscopy quantitative estimations are generally made on images taken of ultrathin sections, but the very first concern of any well designed study is the origin of these images. The distribution of gold labeling over an array of cellular structures displayed in ultrathin sections can be estimated in two main ways. A major use of profile data on ultrathin sections is in assessing gold particle labeling of cell components. The ultrathin sections are exposed to antibodies localized using particles of colloidal gold, and because the section presents the components to the gold labeling system it is crucial to follow the sampling scheme already outlined. This ensures an unbiased sample of cell components is contained in the sections and can gain access to the gold labeling system. Colloidal gold is particulate and can be quantified as a signal that represents the underlying component, and the two principal readouts of interest to cell biologists are the distribution and concentration of gold labeling. New methods have been developed to evaluate labeling distributions and labeling intensities by statistical means.

Description: As invertebrates lack the molecular machinery employed by the vertebrate adaptive immune system, it was thought that they consequently lack the ability to produce lasting and specific immunity. However, in recent years, it has been demonstrated that the immune defence of invertebrates is by far more complicated and specific than previously envisioned. Lasting immunity following an initial exposure that proves protection on a secondary exposure has been shown in several species of invertebrates. This phenomenon has become known as immune priming. In the cases where it is explicitly tested, this priming can also be highly specific. In this study, we used survival assays to test for specific priming of resistance in the red flour beetle, Tribolium castaneum, using bacteria of different degrees of relatedness. Our results suggest an unexpected degree of specificity that even allows for differentiation between different strains of the same bacterium. However, our findings also demonstrate that specific priming of resistance in insects may not be ubiquitous across all bacteria.

Description: Submersible dives on 22 active submarine volcanoes on the Mariana and Tonga-Kermadec arcs have discovered systems on six of these volcanoes that, in addition to discharging hot vent fluid, are also venting a separate CO2-rich phase either in the form of gas bubbles or liquid CO2 droplets. One of the most impressive is the Champagne vent site on NW Eifuku in the northern Mariana Arc, which is discharging cold droplets of liquid CO2 at an estimated rate of 23 mol CO2/s, about 0.1% of the global mid-ocean ridge (MOR) carbon flux. Three other Mariana Arc submarine volcanoes (NW Rota-1, Nikko, and Daikoku), and two volcanoes on the Tonga-Kermadec Arc (Giggenbach and Volcano-1) also have vent fields discharging CO2-rich gas bubbles. The vent fluids at these volcanoes have very high CO2 concentrations and elevated C/3He and δ 13C (CO2) ratios compared to MOR systems, indicating a contribution to the carbon flux from subducted marine carbonates and organic material. Analysis of the CO2 concentrations shows that most of the fluids are undersaturated with CO2. This deviation from equilibrium would not be expected for pressure release degassing of an ascending fluid saturated with CO2. Mechanisms to produce a separate CO2-rich gas phase at the seafloor require direct injection of magmatic CO2-rich gas. The ascending CO2-rich gas could then partially dissolve into seawater circulating within the volcano edifice without reaching equilibrium. Alternatively, an ascending high-temperature, CO2-rich aqueous fluid could boil to produce a CO2-rich gas phase and a CO2-depleted liquid. These findings indicate that carbon fluxes from submarine arcs may be higher than previously estimated, and that experiments to estimate carbon fluxes at submarine arc volcanoes are merited. Hydrothermal sites such as these with a separate gas phase are valuable natural laboratories for studying the effects of high CO2 concentrations on marine ecosystems.

Description: It is shown that some important aspects of the space-time structure of multidecadal sea surface temperature (SST) variability can be explained by local air-sea interactions. A concept for “Global Hyper Climate Modes” is formulated: surface heat flux variability associated with regional atmospheric variability patterns is integrated by the large heat capacity of the extra-tropical oceans, leading to a continuous increase of SST variance towards longer timescales. Atmospheric teleconnections spread the extra-tropical signal to the tropical regions. Once SST anomalies have developed in the Tropics, global atmospheric teleconnections spread the signal around the world creating a global hyper climate mode. A simple model suggests that hyper climate modes can vary on timescales longer than 1,000 years. Ocean dynamics may amplify theses modes and influence the regional expression of the variability, but are not at the heart of the mechanism which produces the hyper modes.

Description: The diversity of Cyanobacteria in water and sediment samples from four representative sites of the Salar de Huasco was examined using denaturing gradient gel electrophoresis and analysis of clone libraries of 16S rRNA gene PCR products. Salar de Huasco is a high altitude (3800 m altitude) saline wetland located in the Chilean Altiplano. We analyzed samples from a tributary stream (H0) and three shallow lagoons (H1, H4, H6) that contrasted in their physicochemical conditions and associated biota. Seventy-eight phylotypes were identified in a total of 268 clonal sequences deriving from seven clone libraries of water and sediment samples. Oscillatoriales were frequently found in water samples from sites H0, H1 and H4 and in sediment samples from sites H1 and H4. Pleurocapsales were found only at site H0, while Chroococcales were recovered from sediment samples of sites H0 and H1, and from water samples of site H1. Nostocales were found in sediment samples from sites H1 and H4, and water samples from site H1 and were largely represented by sequences highly similar to Nodularia spumigena. We suggest that cyanobacterial communities from Salar de Huasco are unique - they include sequences related to others previously described from the Antarctic, along with others from diverse, but less extreme environments.

Description: Live (Rose Bengal stained) benthic foraminifera were investigated in surface sediment samples from the Okhotsk Sea to reveal the relationship between faunal characteristics and environmental parameters. Live benthic foraminifera were quantified in the size fraction 〉 125 µm in the upper 8 cm of replicate sediment cores, recovered with a multicorer at five stations along the Sakhalin margin, and at three stations on the southwestern Kamchatka slope. The stations are from water depths between 625 to 1752 m, located close or within the present Okhotsk Sea oxygen minimum zone, with oxygen levels between 0.3 and 1.5 ml l- 1. At the high-productivity and ice-free Kamchatka stations, live benthic foraminifera are characterized by maximal standing stocks (about 1700-3700 individuals per 50 cm2), strong dominance of calcareous species (up to 87-91% of total live faunas), and maximal habitat depths (down to 5.2-6.7 cm depth). Vertical distributions of total faunal abundances exhibit a clear subsurface maximum in sediments. At the Sakhalin stations, which are seasonally ice-covered and less productive, live benthic foraminifera show lower standing stocks (about 200-1100 individuals per 50 cm2), lower abundance of calcareous species (10-64% of total live faunas), and shallower habitat depths (down to 2.5-5.4 cm depth). Faunal vertical distributions are characterized by maximum in the uppermost surface sediments. It is suggested that 1) lower and strongly seasonal organic matter flux, caused by the seasonal sea ice cover and seasonal upwelling, 2) lower bottom water oxygenation (0.3-1.1 ml l- 1), and 3) more pronounced influence of carbonate undersaturated bottom water along the Sakhalin margin are the main factors responsible for the observed faunal differences. According to species downcore distributions and average living depths, common calcareous species were identified as preferentially shallow, intermediate and deep infaunal. Foraminiferal microhabitat occupation correlates with the organic matter flux and the depth of the oxygenated layer in sediments.

Description: Several trench-outer rise settings in subduction zones worldwide are characterized by a high degree of alteration, fracturing and hydration. These processes are induced by bending-related faulting in the upper part of the oceanic plate prior to its subduction. Mapping of P- and S-wave velocity structures in this complex tectonic setting provides crucial information for understanding the evolution of the incoming oceanic lithosphere, and serves as a baseline for comparison with seismic measurements elsewhere. Active source seismic investigations at the outer rise off Southern Central Chile (∼43°S) were carried out in order to study the seismic structure of the oceanic Nazca Plate. Seismic wide-angle data were used to derive 2-D velocity models of two seismic profiles located seaward of the trench axis on 14.5 Ma old crust; P01a approximately parallel to the direction of spreading and P03 approximately parallel to the spreading ridge and trench axes. We determined P- and S-velocity models using 2-D traveltime tomography. We found that the Poisson's ratio in the upper crust (layer 2) ranges between ∼0.33 at the top of the crust to ∼0.28 at the layer 2/3 interface, while in the lowermost crust and uppermost mantle it reaches values of ∼0.26 and ∼0.29, respectively. These features can be explained by an oceanic crust significantly weathered, altered and fractured. Relative high Poisson's ratios in the uppermost mantle may be likely related to partially hydrated mantle and hence serpentinization. Thus, the seismic structure of the oceanic lithosphere at the Southern Central Chile outer rise exhibits notable differences from the classic ophiolite seismic model (‘normal’ oceanic crust). These differences are primarily attributed to fracturing and hydration of the entire ocean crust, which are direct consequences of strong bending-related faulting at the outer rise. On the other hand, the comparison of the uppermost mantle P-wave velocities at the crossing point between the perpendicular profiles (∼90 km oceanward from the trench axis) reveals a low degree of Pn anisotropy (〈2 per cent).

Description: Three ferromanganese crusts from the northeast, northwest and central Atlantic were re-dated using osmium (Os) isotope stratigraphy and yield ages from middle Miocene to the present. The three Os isotope records do not show evidence for growth hiatuses. The reconstructed Os isotope-based growth rates for the sections older than 10 Ma are higher than those determined previously by the combined beryllium isotope (10Be/9Be) and cobalt (Co) constant-flux methods, which results in a decrease in the maximum age of each crust. This re-dating does not lead to significant changes to the interpretation of previously determined radiogenic isotope neodymium, lead (Nd, Pb) time series because the variability of these isotopes was very small in the records of the three crusts prior to 10 Ma. The Os isotope record of the central Atlantic crust shows a pronounced minimum during the middle Miocene between 15 and 12 Ma, similar to a minimum previously observed in two ferromanganese crusts from the central Pacific. For the other two Atlantic crusts, the Os isotope records and their calibration to the global seawater curve for the middle Miocene are either more uncertain or too short and thus do not allow for a reliable identification of an isotopic minimum. Similar to pronounced minima reported previously for the Cretaceous/Tertiary and Eocene/Oligocene boundaries, possible interpretations for the newly identified middle Miocene Os isotope minimum include changes in weathering intensity and/or a meteorite impact coinciding with the formation of the Nördlinger Ries Crater. It is suggested that the eruption and weathering of the Columbia River flood basalts provided a significant amount of the unradiogenic Os required to produce the middle Miocene minimum.

Description: A number of field-campaigns in the tropics have been conducted in recent years with two different LIDAR systems at Paramaribo (5.8° N, 55.2° W), Suriname. The lidars detect particles in the atmosphere with high vertical and temporal resolution and are capable of detecting extremely thin cloud layers which frequently occur in the tropical tropopause layer (TTL). Radiosonde as well as operational ECMWF analysis showed that equatorial Kelvin waves propagated in the TTL and greatly modulated its temperature structure. We found a clear correlation between the temperature anomalies introduced by these waves and the occurrence of thin cirrus in the TTL. In particular we found that extremely thin ice clouds form regularly where cold anomalies shift the tropopause to high altitudes. These findings suggest an influence of Kelvin wave activity on the dehydration in the TTL and thus on the global stratospheric water vapour concentration.