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  • 11
    Publication Date: 2011-03-24
    Description: Among the genotoxic halofuranones formed by chlorination in water are mucochloric acid (MCA, 3,4-dichloro-5-hydroxyfuran-2(5 H )-one) and mucobromic acid (MBA, 3,4-dibromo-5-hydroxyfuran-2(5 H )-one). These acids are direct genotoxins and potential carcinogens, with the capacity to alkylate the DNA bases. In recent years, they have also attracted attention in the synthesis of furanone derivatives. Mucohalic acids (MXA) exist in solution as an equilibrium between three species; a cyclic lactone-lactol , an open-chain aldehyde-acid , and the dissociated form of the latter . The distribution of the three species in the equilibrium has synthetic, toxicological, and environmental implications owing to their different functionalization. The case of the neutral open-chain form is of special interest, since it is expected to be highly reactive. We have experimentally determined the apparent dissociation constant of the cyclic species . Their values suggest that at neutral pH MXA are mostly present as the dissociated carboxylate-aldehyde. The dissociation constant of the open-chain neutral species and the cyclization equilibrium constant were determined in water and organic solvents, using density functional theory and ab initio methods. The results suggest that the undissociated aldehyde is a minor species at any given pH. The structure of MXA in solution and the influence of the level of theory on the calculated geometry are discussed. Copyright © 2011 John Wiley & Sons, Ltd. Mucohalic acids exist in solution as an equilibrium between three species; a cyclic lactone-lactol, an open-chain aldehyde-acid, and the dissociated form of the later. The distribution of the three species in equilibrium has synthetic, toxicological, and environmental implications and thus, we have determined by a combined experimental and computational approach, the respective equilibrium constants.
    Print ISSN: 0894-3230
    Electronic ISSN: 1099-1395
    Topics: Chemistry and Pharmacology , Physics
    Published by Wiley
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  • 12
    Publication Date: 2011-07-19
    Description: This study focuses on storm deposits in the Muschelkalk facies of the Betic Cordillera (southern Spain) and interprets their deposition mechanisms. Three types of storm deposit are distinguished: (i) pot/gutter casts; (ii) tempestite beds; and (iii) storm-winnowed deposits. Each deposit provides information about the carbonate platform environment in which it was deposited. The tempestite models proposed are: (i) the bypass-zone tempestite model, occurring in a muddy ramp at the epicontinental basin margin. This model is characterized by potholes and gutters that form in a shoreline bypass-zone during storms; (ii) the gradient-current tempestite model in which frequent tempestite beds are related to storm gradient currents. Thickness and grain size decrease towards the deep distal ramp; and (iii) the winnowed deposit tempestite model whereby storm deposits are winnowed and deposited in the same environment with only short lateral transport having occurred. This model evokes more restricted and shallower conditions, lagoons or inland seas. The distribution of all these deposits in the stratigraphic sections studied corroborate the eustatic third-order cycle identified, although the different features of the storm deposits and their positions in each section indicate a subsidence varying in time and space. In the transgressive stage, the margins of the epicontinental basin were a well-developed ramp with potholes and gutters. In contrast, during the high sea-level stage, storm deposits generated tempestite beds or storm-winnowed deposits in the different areas. The epicontinental carbonate platform with ramp edges evolved into a complex depositional system of coastal and shallow-marine environments with lagoons and restricted inland seas. Thus, the epicontinental platform underwent substantial change from the Late Anisian to the Late Ladinian and this is reflected in its storm deposits.
    Print ISSN: 0037-0746
    Electronic ISSN: 1365-3091
    Topics: Geosciences
    Published by Wiley
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  • 13
    Publication Date: 2011-01-06
    Description: Microscale electrokinetic techniques have great potential for the separation and sorting of microorganisms, and could solve the need for rapid and early detection of pathogens in medical diagnostics and food safety applications. Presented here is the application of micro particle image velocimetry for the characterization of electrokinetic transport of three types of microorganisms: Escherichia coli, Ankistrodesmus spiralis , and Saccharomyces cerevisiae . The electrokinetic behavior of these microorganisms was characterized employing a straight glass microchannel and direct current electric fields (50–300 V cm –1 ). The effects of the type and size of microorganism, electric field magnitude, and suspending medium characteristics were analyzed. Additionally, electrokinetic differentiation was achieved when a sample containing a mixture of the three types of microorganisms was analyzed by generating an electropherogram in one minute, identifying that three different species were present. These results demonstrate that fast and effective detection, and differentiation of intact microorganisms can be achieved employing microscale electrokinetic techniques. Characterization of electrokinetic transport of three types of microorganisms: Escherichia coli, Ankistrodesmus spiralis , and Saccharomyces cerevisiae employing particle image velocimetry. Electrokinetic detection and differentiation were achieved by generating an electropherogram in one minute, identifying that three different species were present.
    Print ISSN: 0930-7516
    Electronic ISSN: 1521-4125
    Topics: Chemistry and Pharmacology , Process Engineering, Biotechnology, Nutrition Technology
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  • 14
    Publication Date: 2014-02-04
    Description: The importance of parasitism for host populations depends on local parasite richness and prevalence: usually host individuals face higher infection risk in areas where parasites are most diverse, and host dispersal to or from these areas may have fitness consequences. Knowing how parasites are and will be distributed in space and time (in a context of global change) is thus crucial from both an ecological and a biological conservation perspective. Nevertheless, most research articles focus just on elaborating models of parasite distribution instead of parasite diversity. We produced distribution models of the areas where haemosporidian parasites are currently highly diverse (both at community and within-host levels) and prevalent among Iberian populations of a model passerine host: the blackcap Sylvia atricapilla ; and how these areas are expected to vary according to three scenarios of climate change. Based on these models, we analysed whether variation among populations in parasite richness or prevalence are expected to remain the same or change in the future, thereby reshuffling the geographic mosaic of host-parasite interactions as we observe it today. Our models predict a rearrangement of areas of high prevalence and richness of parasites in the future, with Haemoproteus and Leucocytozoon parasites (today the most diverse genera in blackcaps) losing areas of high diversity and Plasmodium parasites (the most virulent ones) gaining them. Likewise, the prevalence of multiple infections and parasite infracommunity richness would be reduced. Importantly, differences among populations in the prevalence and richness of parasites are expected to decrease in the future, creating a more homogeneous parasitic landscape. This predicts an altered geographic mosaic of host-parasite relationships, which will modify the interaction arena in which parasite virulence evolves. This article is protected by copyright. All rights reserved.
    Print ISSN: 1354-1013
    Electronic ISSN: 1365-2486
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Geography
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  • 15
    Publication Date: 2016-05-14
    Description: Bacillus thuringiensis subsp. tenebrionis DSM-2803 has been studied extensively and spore/crystal mixtures of this strain are used widely in commercial products to control coleopteran pests. The endochitinase chiA Btt gene of B. thuringiensis subsp. tenebrionis DSM-2803 was cloned and expressed in Escherichia coli . The recombinant 6x-histidine tagged protein (rChiA Btt, ~74 kDa), was purified by a HiTrap Ni affinity column. The K m of rChiA Btt was 0.847  μ mol L −1 and its optimal activity occurred at pH 7 and ~40°C. Most divalent cations reduced endochitinase activity but only Hg +2 abolished activity of the enzyme. We report for the first time the characterization of a chitinase synthesized by B. thuringiensis subsp. tenebrionis DSM-2803, and show that the purified rChiA74 Btt reduced the radial growth and increased the hyphal density of Colletotrichium gloeosporioides, the etiological agent of “anthracnose” in plants. It is reported for the first time the cloning and characterization of a chitinase synthesized by the commercial strain of Bacillus thuringiensis subsp. tenebrionis DSM-2803.We show that purified recombinant enzyme from B. thuringiensis is active against the fungus Colletotrichium gloeosporioides .
    Electronic ISSN: 2045-8827
    Topics: Biology , Medicine
    Published by Wiley
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  • 16
    Publication Date: 2016-05-25
    Description: The aim of this paper was to evaluate the ozonation on the phenols present in pyrolytic aqueous phases attained from biomass thermochemical conversion. During ozonation the dark color of original samples was found to decrease as a function of ozonation time. The oxidation kinetic of phenols was quantified by a method based on the color changes of samples. The oxidation profiles showed different behaviors and in some cases the phenols presented a positive correlation with “relative R” color parameter, spite of, eugenol, syringol and vanillin which were markedly different. Finally, the color changes observed seem to be associated with the changes in the overall content of phenols and with the change in the molecular weight of the heavy fractions that include lignin oligomers.
    Print ISSN: 0930-7516
    Electronic ISSN: 1521-4125
    Topics: Chemistry and Pharmacology , Process Engineering, Biotechnology, Nutrition Technology
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  • 17
    Publication Date: 2017-09-08
    Description: We describe the home range and movements of a population of Kinosternon integrum in Tonatico, Estado de México, México, over 3.5 years (during rainy and dry season months) using radiotelemetry in 37 adult turtles. The results showed that the home range of K. integrum was 0.151 ± 0.051 ha using 50% kernel density estimator (KDE), and 0.657 ± 0.214 ha using 95% KDE; the home range did not vary between sexes. Kinosternon integrum showed low distances traveled 51.44 ± 4.50 m, where 87.3% ( n  = 373) of movements were 〈100 m. The distance traveled differed by season, and movement category (aquatic and terrestrial movements). The shortest distance occurred during the dry season, during which some individuals move to estivation sites, and these movements were shorter than movements to artificial ponds (cattle ponds). In this population, home range and movement are similar to other species of the genus Kinosternon . Overall, the results indicate than K. integrum are highly dependent on aquatic habitats, but also utilize the terrestrial habitats for different biological activities, and to maintain viable populations. Therefore, the conservation of the entire inhabited area is fundamental. This study highlights the need to increase the studies, in Central México, concerning habitat use of freshwater turtles in order to increase the efficiency of conservation strategies. The movements of Kinosternon integrum in Tonatico, Estado de México, México, depend on the activity throughout the year. This population not exhibit a pattern of movements; it has a high variation intrapopulation, it has high fidelity for the aquatic habitats, and the size of the home range in K. integrum was relatively large in respect to other species within the Kinosternidae family.
    Electronic ISSN: 2045-7758
    Topics: Biology
    Published by Wiley
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  • 18
    Publication Date: 2017-06-08
    Description: The pathological characteristic of cirrhosis is scarring which results in a structurally distorted and dysfunctional liver. Previously, we demonstrated that Col1a1 and Pparg genes are deregulated in CCl 4 -induced cirrhosis but their normal expression levels are recovered upon treatment with IFC-305, an adenosine derivative. We observed that adenosine was able to modulate S-adenosylmethionine-dependent trans-methylation reactions, and recently, we found that IFC-305 modulates HDAC3 expression. Here, we investigated whether epigenetic mechanisms, involving DNA methylation processes and histone acetylation, could explain the re-establishment of gene expression mediated by IFC-305 in cirrhosis. Therefore, Wistar rats were CCl 4 treated and a sub-group received IFC-305 to reverse fibrosis. Global changes in DNA methylation, 5-hydroxymethylation and histone H4 acetylation were observed after treatment with IFC-305. In particular, during cirrhosis, the Pparg gene promoter is depleted of histone H4 acetylation, whereas IFC-305 administration restores normal histone acetylation levels which correlates with an increase of Pparg transcript and protein levels. In contrast, the promoter of Col1a1 gene is hypomethylated during cirrhosis but gains DNA methylation upon treatment with IFC-305 which correlates with a reduction of Col1a1 transcript and protein levels. Our results suggest a model in which cirrhosis results in a general loss of permissive chromatin histone marks which triggers the repression of the Pparg gene and the upregulation of the Col1a1 gene. Treatment with IFC-305 restores epigenetic modifications globally and specifically at the promoters of Pparg and Col1a1 genes. These results reveal one of the mechanisms of action of IFC-305 and suggest a possible therapeutic function in cirrhosis. This article is protected by copyright. All rights reserved
    Electronic ISSN: 0091-7419
    Topics: Biology , Chemistry and Pharmacology , Medicine
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  • 19
    Publication Date: 2017-11-25
    Description: Analysis of pre-stack seismic data is important for seismic interpretation and geological features classification. However, most classification analyses are based on post-stack data, which ignores pre-stack information and it may be disadvantageous for complex geological description. In this work we propose a method to address the classification of pre-stack seismic data decomposed using the wavelet transform to spread the amplitude and frequency seismic attributes at the same time, which are then classified by a self-organizing map. The resulting classes constitute an attribute constructed by the joint amplitude-frequency components of the transformed pre-stack seismic gathers, which create a multidimensional set defined through a given metric. Tests on a real seismic cube revealed that the method can identify patterns observed on the seismic images, which agree with our current knowledge of the seismic data. The method can be used as a complementary tool to identify features and structures in seismic signals. This article is protected by copyright. All rights reserved
    Print ISSN: 0016-8025
    Electronic ISSN: 1365-2478
    Topics: Geosciences , Physics
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  • 20
    Publication Date: 2017-12-27
    Description: Diet plays a key role in determining the longevity of the organisms since it has been demonstrated that glucose restriction increases lifespan whereas a high-glucose diet decreases it. However, the molecular basis of how diet leads to the aging process is currently unknown. We propose that the quantity of glucose that fuels respiration influences ROS generation and glutathione levels, and both chemical species impact in the aging process. Herein, we provide evidence that mutation of the gene GSH1 in S. cerevisiae diminishes glutathione levels. Moreover, glutathione levels were higher with 0.5% than in 10% glucose in the gsh1Δ and WT strains. Interestingly, the chronological life span (CLS) was lowered in the gsh1Δ strain cultured with 10% glucose but not under dietary restriction. The gsh1Δ strain also showed an inhibition of the mitochondrial respiration in 0.5 and 10% of glucose but only increased the H 2 O 2 levels under dietary restriction. These results correlate well with the GSH/GSSG ratio, which showed a decrease in gsh1Δ strain cultured with 0.5% glucose. Together, these data indicate that glutathione exhaustion impact negatively both the electron transport chain function and the CLS of yeast, the latter occurring when a low threshold level of this antioxidant is reached, independently of the H 2 O 2 levels.
    Print ISSN: 0749-503X
    Electronic ISSN: 1097-0061
    Topics: Biology
    Published by Wiley
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