ALBERT

Description: Phytoplankton cells in the size range ~1–50 μm were analysed in surface waters using an automated flow cytometer, the Cytosub (http://www.cytobuoy.com), from the Azores to the French Brittany during spring 2007. The Cytosub records the pulse shape of the optical signals generated by phytoplankton cells when intercepted by the laser beam. A total of 6 distinct optical groups were resolved during the whole transect, and the high frequency sampling (15 min) provided evidence for the cellular cycle (based on cyclic changes in cell size and fluorescence) and distribution changes linked to the different water characteristics crossed in the north east Atlantic provinces. Nutrient concentrations and mixed layer depth varied from west to east, with a decrease in the mixed layer depth and high nutrient concentrations in the middle of the transect as well as near the French coast. Data provided a link between the sub meso scale processes and phytoplankton patchiness, some abundance variations due to the cellular cycle can be pointed out. The high frequency spatial sampling encompasses temporal variations of the phytoplankton abundance, offering a better insight into phytoplankton distribution.

Description: Bacterioplankton play a central role in energy and matter fluxes at the sea, yet the factors that constrain their variation in the marine systems are still poorly understood. Here we show the explanatory power of multivariate statistical analysis of bacterial community structures coupled with fine measurements of numerous environmental parameters. We gathered and analysed data from a one month sampling period from the surface to 1000 m depth at the JGOFS-DYFAMED station (NW Mediterranean Sea). This station is characterized by very poor horizontal advection currents what makes it an ideal model to test hypothesis on the causes of vertical stratification of bacterial communities. Capillary electrophoresis single strand conformation polymorphism (CE-SSCP) fingerprinting profiles analyzed using multivariate statistical methods demonstrated a vertical zonation of bacterial assemblages in three layers, above, in or just below the chlorophyll maximum and deeper, that remained stable during the entire sampling period. Through the use of direct gradient multivariate ordination analyses we demonstrate that a complex array of biogeochemical parameters is the driving force behinds bacterial community structure shifts in the water column. Physico-chemical parameters such as phosphate, nitrate, salinity and to a lesser extend temperature, oxygen, dissolve organic carbon and photosynthetically active radiation acted in synergy to explain bacterial assemblages changes with depth. Analysis of lipid biomarkers of the organic matter sources and fates suggested that bacterial community structure at the surface layers was in part explained by lipids from chloroplast origin. Further detailed analysis of pigment-based phytoplankton diversity gave evidence of a compartmentalized influence of several phytoplankton groups on bacterial community structure in the first 150 m depth. This study is probably the first example of an analysis employing a complex environmental dataset in combination with microbial community profiles to unravel the mechanisms underneath bacterial assemblages in marine systems.

Description: A one-year survey of the sedimenting particulate material was conducted at the SOFi site located on the edge of the continental slope in the Gulf of Lions (Northwestern Mediterranean) between September 1999 and December 2000. The main focus of this paper was to investigate the seasonal pattern of particulate biogenic silica (BSi) sedimentation fluxes in comparison with the particulate carbon fluxes and establish annual budgets of Si and C export. The pattern of the downward flux of BSi was partly typical with increased daily sedimentation rates during spring followed by smaller peaks during summer. However, an unusual sedimentation event was recorded in the bottom trap in February before the spring thermal stratification occurred, and represented 37% of the annual BSi mass flux. The total annual BSi flux at the SOFi site was estimated from the bottom trap and amounted to 86.8 mmol Si m-2 y-1, while the organic carbon flux amounted to 154.9 mmol C m-2 y-1. The overall efficiency of C export to depth compared to surface primary production budgets was low (3%) and similar to values found for oligotrophic regions of the Eastern Mediterranean. On the other hand, we documented a very high efficiency of the Si export at the SOFi site, with 62% of the Si produced in the surface layer exported to the bottom trap. The excellent correlation between BSi and particulate organic C (POC) in the bottom trap further indicates that the bulk of the organic matter is transferred to depth in association with diatoms. However, the main fraction of the C produced by phytoplankton is lost in the water column through oxidation or metabolisation, while biogenic silica is more efficiently transferred to depth. This strong Si/C decoupling with depth is likely to be the cause of the spring depletion of silicic acid over the entire water column which was observed by mid-April in a companion study (Leblanc et al., 2003) and may cause a severe Si limitation of the diatom spring bloom in this oligotrophic region of the Gulf of Lions.

Description: The BIOSOPE cruise of the RV Atalante was devoted to study the biogeochemical properties in the South Pacific between the Marquesas Islands (141° W–8° S) and the Chilean upwelling (73° W–34° S). The 8000 km cruise had the opportunity to encounter different trophic situations, and especially strong oligotrophic conditions in the Central South Pacific Gyre (SPG, between 123° W and 101° W). In this isolated region, nitrate was undetectable between surface and 160–180 m, while regenerated nitrogen (nitrite and ammonium) only revealed some traces (100 μmoles l−1). Due to this large pool of DOM over the whole photic layer of the SPG, integrated values followed an opposite geographical pattern than this of inorganic nutrients with a large accumulation within the centre of the SPG. While suspended particulate matter in the mixed layer had C/N ratio largely conform to Redfield stoichiometry (C/N≈6.6), marked deviations were observed in this excess DOM (C/N≈16 to 23). The existence of C-rich dissolved organic matter is recognized as a feature typical of oligotrophic waters, requiring the over consumption of carbon. Thus, in spite of strong nitrate-depletion leading to low chlorophyll biomass, the closed ecosystem of the SPG can produce a large amount of carbon. The implications of this finding are discussed, the conclusion being that, due to the lack of seasonal vertical mixing and weak lateral advection, the dissolved organic carbon biologically produced can be accumulated and stored in the photic layer for a very long period.

Description: Phytoplankton cells in the size range ~1–50 μm were analysed in surface waters using an automated flow cytometer, the Cytosub (http://www.cytobuoy.com), from the Azores to the French Brittany during spring 2007. The Cytosub records the pulse shape of the optical signals generated by phytoplankton cells when intercepted by the laser beam. A total of 6 distinct optical groups were resolved during the whole transect, and the high frequency sampling (15 min) provided evidence for the cellular cycle (based on cyclic changes in cell size and fluorescence) and distribution changes linked to the different water characteristics crossed in the North East Atlantic provinces. Nutrient concentrations and mixed layer depth varied from west to east, with a decrease in the mixed layer depth and high nutrient concentrations in the middle of the transect as well as near the French coast. Data provided a link between the sub meso scale processes and phytoplankton patchiness, some abundance variations due to the cellular cycle can be pointed out. The high frequency spatial sampling encompasses temporal variations of the phytoplankton abundance, offering a better insight into phytoplankton distribution.