ALBERT

Description: The concentrations and elemental stoichiometry of particulate and dissolved pools of carbon (C), nitrogen (N), phosphorus (P) and silicon (Si) in the southeast Beaufort Sea during summer 2009 were assessed and compared with those of surface waters provided by the Mackenzie river as well as by winter mixing and upwelling of upper halocline waters at the shelf break. Neritic surface waters showed a clear enrichment in dissolved and particulate organic carbon (DOC and POC, respectively), nitrate, total particulate nitrogen (TPN) and dissolved organic nitrogen (DON) originating from the river. Silicate as well as bulk DON and DOC declined in a conservative manner away from the delta's outlet, whereas nitrate dropped non-conservatively to very low background concentrations inside the brackish zone. By contrast, the excess of soluble reactive P (SRP) present in oceanic waters declined in a non-conservative manner toward the river outlet, where concentrations were very low and consistent with P shortage in the Mackenzie River. These opposite gradients imply that the admixture of Pacific-derived, SRP-rich water is necessary to allow phytoplankton to use river-derived nitrate and to a lesser extent DON. A coarse budget based on concurrent estimates of primary production shows that river N deliveries support a small fraction of primary production when considering the entire shelf, due to the ability of phytoplankton to thrive in the subsurface chlorophyll maximum beneath the thin, nitrate-depleted river plume. Away from shallow coastal bays, local elevations in the concentration of primary production and dissolved organic constituents were consistent with upwelling at the shelf break. By contrast with shallow winter mixing, nutrient deliveries by North American rivers and upwelling relax surface communities from N limitation and permit a more extant utilization of the excess SRP entering through Bering Strait. In this context, increased nitrogen supply by rivers and upwelling potentially alter the vertical distribution of the excess P exported into the North Atlantic.

Description: Lipid tracers including fatty acids, hydroxyacids, n-alkanols, sterols and triterpenoids were used to determine the origin and fate of suspended particulate organic matter (POM) collected in the Rhone River (France). This seasonal survey (April 2011 to May 2013) revealed a year-round strong terrigenous contribution to the plant-derived particulate organic matter (POM), with significant algal inputs observed in March and attributed to phytoplanktonic blooms likely dominated by diatoms. Major terrigenous contributors to our samples are gymnosperms, and more precisely their roots and stems, as evidenced by the presence of high proportions of ω-hydroxydocosanoic acid (a suberin biomarker). The high amounts of coprostanol detected clearly show that the Rhone River is significantly affected by sewage waters. Specific sterol degradation products were quantified and used to assess the part of biotic and abiotic degradation of POM within the river. Plant-derived organic matter appears to be mainly affected by photo-oxidation and autoxidation (free radical oxidation), while organic matter of human origin, evidenced by the presence of coprostanol, is clearly more prone to bacterial degradation. Despite the involvement of an intense autoxidation-inducing homolytic cleavage of peroxy bonds, a significant proportion of hydroperoxides is still intact in higher plant debris. These compounds could affect the degradation of terrestrial material by inducing an intense autoxidation upon its arrival at sea.

Description: A one-year survey of the sedimenting particulate material was conducted at the SOFi site located on the edge of the continental slope in the Gulf of Lions (Northwestern Mediterranean) between September 1999 and December 2000. The main focus of this paper was to establish an annual budget of biogenic silica export, to describe the seasonnal pattern of Si fluxes in relation to the organic and mineral C fluxes and to quantify the Si/C decoupling processes during sedimentation. The pattern of the downward flux of BSi was partly typical with increased daily sedimentation rates during spring followed by smaller peaks during summer. However, an unusual sedimentation event was recorded in the bottom trap in February before the spring thermal stratification occurred, and represented 37% of the annual BSi mass flux. The total annual BSi flux at the SOFi site was estimated from the bottom trap and amounted to 86.8 mmol Si m-2 y-1, while the organic carbon flux amounted to 154.9 mmol C m-2 y-1. The overall efficiency of C export to depth compared to surface primary production budgets was low (3%) and similar to values found for oligotrophic regions of the Eastern Mediterranean. On the other hand, we documented a very high efficiency of the Si export at the SOFi site, with 62% of the Si produced in the surface layer exported to the bottom trap. The excellent correlation between BSi and particulate organic C (POC) in the bottom trap further indicates that the bulk of the organic matter is transferred to depth in association with diatoms. However, the main fraction of the C produced by phytoplankton is lost in the water column through oxidation or metabolisation, while biogenic silica is more efficiently transferred to depth. This strong Si/C decoupling with depth is likely to be the cause of the spring depletion of silicic acid over the entire water column which was observed by mid-April in a companion study (Leblanc et al., 2003) and may cause a severe Si limitation of the diatom spring bloom in this oligotrophic region of the Gulf of Lions.

Description: One of the major objectives of the BIOSOPE cruise, carried out on the R/V Atalante from October-November 2004 in the South Pacific Ocean, was to establish productivity rates along a zonal section traversing the oligotrophic South Pacific Gyre (SPG). These results were then compared to measurements obtained from the nutrient – replete waters in the Chilean upwelling and around the Marquesas Islands. A dual 13C/15N isotope technique was used to estimate the carbon fixation rates, inorganic nitrogen uptake (including dinitrogen fixation), ammonium (NH4) and nitrate (NO3) regeneration and release of dissolved organic nitrogen (DON). The SPG exhibited the lowest primary production rates (0.15 g C m−2 d−1), while rates were 7 to 20 times higher around the Marquesas Islands and in the Chilean upwelling, respectively. In the very low productive area of the SPG, most of the primary production was sustained by active regeneration processes that fuelled up to 95% of the biological nitrogen demand. Nitrification was active in the surface layer and often balanced the biological demand for nitrate, especially in the SPG. The percentage of nitrogen released as DON represented a large proportion of the inorganic nitrogen uptake (13–15% in average), reaching 26–41% in the SPG, where DON production played a major role in nitrogen cycling. Dinitrogen fixation was detectable over the whole study area; even in the Chilean upwelling, where rates as high as 3 nmoles l−1 d−1 were measured. In these nutrient-replete waters new production was very high (0.69±0.49 g C m−2 d−1) and essentially sustained by nitrate levels. In the SPG, dinitrogen fixation, although occurring at much lower daily rates (≈1–2 nmoles l−1 d−1), sustained up to 100% of the new production (0.008±0.007 g C m−2 d−1) which was two orders of magnitude lower than that measured in the upwelling. The annual N2-fixation of the South Pacific is estimated to 21×1012g, of which 1.34×1012g is for the SPG only. Even if our "snapshot" estimates of N2-fixation rates were lower than that expected from a recent ocean circulation model, these data confirm that the N-deficiency South Pacific Ocean would provide an ideal ecological niche for the proliferation of N2-fixers which are not yet identified.

Description: During the BIOSOPE cruise the RV Atalante was dedicated to study the biogeochemical properties in the South Pacific between the Marquesas Islands (141° W–8° S) and the Chilean upwelling (73° W–34° S). Over the 8000 km covered by the cruise, several different trophic situations were encountered, in particular strong oligotrophic conditions in the South Pacific Gyre (SPG, between 123° W and 101° W). In this isolated region, nitrate was undetectable between the surface and 160–180 m and only trace quantities (100 μmoles l−1). Due to this large pool of DOM in the SPG photic layer, integrated values followed a converse geographical pattern to that of inorganic nutrients with a large accumulation in the centre of the SPG. Whereas suspended particulate matter in the mixed layer had a C/N ratio largely conforming to the Redfield stochiometry (C/N≈6.6), marked deviations were observed in this excess DOM (C/N≈16 to 23). The marked geographical trend suggests that a net in situ source exists, mainly due to biological processes. Thus, in spite of strong nitrate-depletion leading to low chlorophyll biomass, the closed ecosystem of the SPG can accumulate large amounts of C-rich dissolved organic matter. The implications of this finding are examined, the conclusion being that, due to weak lateral advection, the biologically produced dissolved organic carbon can be accumulated and stored in the photic layer for very long periods. In spite of the lack of seasonal vertical mixing, a significant part of new production (up to 34%), which was mainly supported by dinitrogen fixation, can be exported to deep waters by turbulent diffusion in terms of DOC. The diffusive rate estimated in the SPG (134 μmolesC m−2 d−1), was quite equivalent to the particles flux measured by sediments traps.

Description: Lipid tracers including fatty acids, hydroxyacids, n-alkanols, sterols and triterpenoids were used to determine the origin and fate of suspended particulate organic matter (POM) collected in the Rhône River (France). This seasonal survey (April 2011 to May 2013) revealed a year-round strong terrestrial higher-plant contribution to the particulate organic matter (POM), with significant algal inputs observed in March and attributed to phytoplanktonic blooms likely dominated by diatoms. Major terrigenous contributors to our samples are gymnosperms, and more precisely their roots and stems, as evidenced by the presence of high proportions of ω-hydroxydocosanoic acid (a suberin biomarker). The high amounts of coprostanol detected clearly show that the Rhône River is significantly affected by sewage waters. Specific sterol degradation products were quantified and used to assess the part of biotic and abiotic degradation of POM within the river. Higher-plant-derived organic matter appears to be mainly affected by photo-oxidation and autoxidation (free radical oxidation), while organic matter of mammal or human origin, evidenced by the presence of coprostanol, is clearly more prone to bacterial degradation. Despite the involvement of an intense autoxidation-inducing homolytic cleavage of peroxy bonds, a significant proportion of hydroperoxides is still intact in higher plant debris. These compounds could affect the degradation of terrestrial material by inducing an intense autoxidation upon its arrival at sea.

Description: Bacterioplankton plays a central role in energy and matter fluxes in the sea, yet the factors that constrain its variation in marine systems are still poorly understood. Here we use the explanatory power of direct multivariate gradient analysis to evaluate the driving forces exerted by environmental parameters on bacterial community distribution in the water column. We gathered and analysed data from a one month sampling period from the surface to 1000 m depth at the JGOFS-DYFAMED station (NW Mediterranean Sea). This station is characterized by very poor horizontal advection currents which makes it an ideal model to test hypotheses on the causes of vertical stratification of bacterial communities. Capillary electrophoresis single strand conformation polymorphism (CE-SSCP) fingerprinting profiles analyzed using multivariate statistical methods demonstrated a vertical zonation of bacterial assemblages in three layers, above, in or just below the chlorophyll maximum and deeper, that remained stable during the entire sampling period. Through the use of direct gradient multivariate ordination analyses we demonstrate that a complex array of biogeochemical parameters is the driving force behind bacterial community structure shifts in the water column. Physico-chemical parameters such as phosphate, nitrate, salinity and to a lesser extent temperature, oxygen, dissolved organic carbon and photosynthetically active radiation acted in synergy to explain bacterial assemblages changes with depth. Analysis of lipid biomarkers of organic matter sources and fates suggested that bacterial community structure in the surface layers was in part explained by lipids of chloroplast origin. Further detailed analysis of pigment-based phytoplankton diversity gave evidence of a compartmentalized influence of several phytoplankton groups on bacterial community structure in the first 150 m depth.

Description: The concentrations and elemental stoichiometry of particulate and dissolved pools of carbon (C), nitrogen (N), phosphorus (P) and silicon (Si) on the Canadian Beaufort Shelf during summer 2009 (MALINA program) were assessed and compared with those of surface waters provided by the Mackenzie river as well as by winter mixing and upwelling of upper halocline waters at the shelf break. Neritic surface waters showed a clear enrichment in dissolved and particulate organic carbon (DOC and POC, respectively), nitrate, total particulate nitrogen (TPN) and dissolved organic nitrogen (DON) originating from the river. Silicate as well as bulk DON and DOC declined in a near-conservative manner away from the delta's outlet, whereas nitrate dropped non-conservatively to very low background concentrations inside the brackish zone. By contrast, the excess of soluble reactive P (SRP) present in oceanic waters declined in a non-conservative manner toward the river outlet, where concentrations were very low and consistent with P shortage in the Mackenzie River. These opposite gradients imply that the admixture of Pacific-derived, SRP-rich water is necessary to allow phytoplankton to use river-derived nitrate and to a lesser extent DON. A coarse budget based on concurrent estimates of primary production shows that river N deliveries support a modest fraction of primary production when considering the entire shelf, due to the ability of phytoplankton to thrive in the subsurface chlorophyll maximum beneath the thin, nitrate-depleted river plume. Away from shallow coastal bays, local elevations in the concentration of primary production and dissolved organic constituents were consistent with upwelling at the shelf break. By contrast with shallow winter mixing, nutrient deliveries by North American rivers and upwelling relax surface communities from N limitation and permit a more extant utilization of the excess SRP entering through the Bering Strait. In this context, increased nitrogen supply by rivers and upwelling potentially alters the vertical distribution of the excess P exported into the North Atlantic.

Description: A major goal of the BIOSOPE cruise on the R/V Atalante to the South Pacific Ocean (conducted in October–November 2004) was to establish rate of productivity along a longitudinal section across the oligotrophic South Pacific Gyre (SPG), and compared these measurements with those obtained in nutrient–repleted waters from Chilean upwelling and around Marquesas Islands. A dual 13C/15N isotopic technique was used to estimate rates of carbon fixation, inorganic nitrogen uptake (including dinitrogen fixation), ammonium (NH4) and nitrate (NO3) regeneration, and dissolved organic nitrogen (DON) release resulting from both NH4 and NO3 uptake. The SPG had revealed the lowest rates of primary production (0.1 gC.m−2.d−1), while rates were 7 to 20 fold higher around the Marquesas Islands and in the Chilean upwelling, respectively. In this very low productive area, most of primary production was sustained by active regeneration processes which fuelled up to 95% of the biological nitrogen demand. Since nitrification was very active in the surface layer and often balanced the biological demand of nitrate, dinitrogen fixation, although acting at low daily rate (≈1–2 nmoles l−1d−1), sustained the main part of new production. Then, new production in the SPG (0.008±0.007 gC m−2.d−1) was two orders of magnitude lower than this measured in the upwelling where it essentially sustained by nitrate (0.69±0.49 gC.m−2.d−1). In the whole investigated region, the percentage of nitrogen release as DON represented a large part of the inorganic nitrogen uptake (13–15% in average), and reaching 26–41% in the SPG where the production of DON appeared to be a major part of the nitrogen cycle. Due to the lack of annual vertical mixing and very low lateral advection, the high release rates could explain the large accumulation of dissolved organic matter observed in the nitrogen-depleted and low productive waters of the South Pacific Gyre.