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  • 1
    Digitale Medien
    Digitale Medien
    s.l. : American Chemical Society
    Journal of the American Chemical Society 101 (1979), S. 6032-6040 
    ISSN: 1520-5126
    Quelle: ACS Legacy Archives
    Thema: Chemie und Pharmazie
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 2
    Digitale Medien
    Digitale Medien
    Springer
    Journal of molecular modeling 2 (1996), S. 70-102 
    ISSN: 0948-5023
    Schlagwort(e): Proteins ; Davydov Model ; Special Cases ; Expansion of Exact Solutions
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Chemie und Pharmazie
    Notizen: Abstract For the Davydov Hamiltonian several special cases are known which can be solved analytically. Starting from these cases we show that the initial state for a simulation using Davydov′s |D1〉 approximation has to be constructed from a given set of initial lattice displacements and momenta in form of a coherent state with its amplitudes independent of the lattices site, corresponding to Davydov′s |D2〉 approximation. In the |D1〉 ansatz the coherent state amplitudes are site dependent. The site dependences evolve from this initial state exclusively via the equations of motion. Starting the |D1〉 simulation from an ansatz with site dependent coherent state amplitudes leads to an evolution which is different from the analytical solutions for the special cases. Further we show that simple construction of such initial states from the expressions for displacements and momenta as functions of the amplitudes leads to results which are inconsistent with the expressions for the lattice energy. The site-dependence of coherent state amplitudes can only evolve through the exciton-phonon interactions and cannot be introduced already in the initial state. Thus also in applications of the |D1〉 ansatz to polyacetylene always |D2〉 type initial states have to be used in contrast to our previous suggestion [W. Förner, J. Phys.: Condens. Matter 1994, 6, 9089-9151, on p. 9105]. Further we expand the known exact solutions in Taylor serieses in time and compare expectation values in different orders with the exact results. We find that for an approximation up to third order in time (for the wave function) norm and total energy, as well as displacements and momenta are reasonably correct for a time up to 0.12-0.14 ps, depending somewhat on the coupling strengh for the transportless case. For the oscillator system in the decoupled case the norm is correct up to 0.6-0.8 ps, while the expectation values of the number operators for different sites are reasonably correct up to roughly 0.6 ps, when calculated from the third order wave function. The most important result for the purpose to use such expansions for controlling the validity of ansatz states is, however, that the accuracy of S(t) and H(t) (constant in time, exact values known in all cases) is obviously a general indicator for the time region in which a given expansion yields reliable values also for the other, physically more interesting expectation values.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 3
    Digitale Medien
    Digitale Medien
    Springer
    Journal of molecular modeling 3 (1997), S. 78-116 
    ISSN: 0948-5023
    Schlagwort(e): Proteins ; Davydov model ; Dynamics ; Vibrational spectra
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Chemie und Pharmazie
    Notizen: Abstract The mechanism for energy and signal transport in proteins as suggested by Davydov is discussed. The idea is based on a coupling of amide-I oscillators to acoustic phonons in a hydrogen bonded chain. Results as obtained with the usually used ansätze are discussed. The quality of these states for an approximate solution of the time-dependent Schrödinger equation is investigated. It is found that the semiclassical ansatz is a poor approximation, while the more sophisticated |D1〉 state seems to represent the exact dynamics quite well. This was shown by extensive calculations, both analytically and numerically in the two preceding papers. Calculations at a temperature of 300K for one chain, as well as for three coupled ones (as they are present in an α-helix) are presented and discussed. From the calculations it is evident, that Davydov solitons are stable for reasonable parameter values at 300K for special initial excitations close to the terminal sites of the chain. Further vibrational spectra are presented and discussed. Our results suggest, that due to their strong dependence on the initial state, the Davydov |D1〉 model system might be a (quantum) chaotic one.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 4
    Digitale Medien
    Digitale Medien
    Springer
    Journal of molecular modeling 4 (1998), S. 12-32 
    ISSN: 0948-5023
    Schlagwort(e): Keywords Conducting polymers ; Nonlinear dynamics ; Solitons ; Polarons ; Electronic spectra
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Chemie und Pharmazie
    Notizen: Abstract  Conjugated organic polymers are intrinsically semiconductors but become conducting upon doping and photoconducting after optical excitation. In the low doping regime they show usually conduction without an associated spin transport. Thus as charge carriers in this regime nonlinear quasiparticles are assumed, such as charged solitons in materials with a degenerate ground state like e.g. trans-polyacetylene or pernigraniline. In the case of materials with a non-degenerate ground state the situation is often less clear but it is assumed that charged polarons or bipolarons are the charge carriers in them. We present a theoretical model for the description of the dynamics of such quasiparticles which yields also information on their mobility, their nature and stability, as well as their spectral properties. The model is based on a π-electron Hamiltonian including electron-electron interactions. On the basis of the prototype material polyacetylene it is demonstrated how such a model can be parametrized with the help of correlated ab initio or density functional calculations and applied. We discuss in some detail the dynamics of the pristine material, as well as of doped and of electronically excited polyene chains. With the help of these dynamics a scenario for the conduction mechanism assumed for polyacetylene is given. Further we calculate optical spectra from the dynamics for charged solitons and for excited chains which are in fair agreement with experiments. The thermal mobility of neutral solitons is also studied. Further we show how the model can be extended for applications to polymers different from polyacetylene. Such modifications could yield informations about the nature of nonlinear quasiparticles involved in the process of charge transport in cases where the question is not completely solved. This is the case in cis-polyacetylene where recent literature suggests that bipolarons should be instable. However, we could show that both charged polarons and bipolarons are stable in the material with bipolarons favored over charged polarons. Due to the fact that the model can be extended to other polymers, also to chemical stuctures not yet synthesized, it could gain also predictive power after further development.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 5
    ISSN: 0948-5023
    Schlagwort(e): Keywords Vibrational spectra and assignments, Rotational barriers, 3,3,3-trifluoropropanal
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Chemie und Pharmazie
    Notizen: Abstract The conformational behavior and structure of 3,3,3,-trifluoropropal have been investigated by utilizing ab initio calculations with the 6-31G** basis set (valence double zeta basis with polarization functions on all atoms) at the restricted Hartree Fock (RHF), second-order Møller-Plesset perturbation (MP2), and Density Functional (B3LYP) levels. The molecule is predicted to have a cisÛgauche conformational equilibrium. Full optimization of the transition states was performed and the rotational barriers of both the CHO and CF3 rotors were calculated. Vibrational frequencies were computed at the three levels and the zero-point corrections were included into the calculated asymmetric CHO rotational barrier. Complete vibrational assignments were made on the basis of normal coordinate calculations for both stable conformers of the molecule.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 6
    ISSN: 0948-5023
    Schlagwort(e): Ab initio ; Structural stability ; Rotational barrier ; 3-Cyclopropenecarboxaldehyde ; 3-Cyclo-propenecarboxylic acid fluoride
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Chemie und Pharmazie
    Notizen: Abstract The structural stability and internal rotation in 3-cyclopropenecarboxaldehyde and 3-cyclo-propenecarboxylic acid fluoride were investigated by ab initio calculations with a 6-31G* atomic basis in the latter and a 6-311G* atomic basis set in the former case. For the sake of comparison also results obtained with a 3-21G basis are given in the paper. As expected, it turned out that this basis set is not large enough for three-membered rings. The calculations were carried out both at the Restricted Hartree-Fock (HF) and the second order Moller-Plesset (MP2) levels. The trans-form is predicted to be the lower energy conformer for both molecules. However, in case of the fluoride the two conformers have nearly the same energy. Full optimization was performed at the transition states and the asymmetric potential function for the CXO internal rotations was predicted for both molecules.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 7
    Digitale Medien
    Digitale Medien
    Springer
    Journal of molecular modeling 2 (1996), S. 103-135 
    ISSN: 0948-5023
    Schlagwort(e): Proteins ; Davydov Model ; Nonlinear Dynamics ; Expansion of Exact Solutions ; Ansätze
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Chemie und Pharmazie
    Notizen: Abstract We performed long time simulations using the |D1〉 approximation for the solution of the Davydov Hamiltonian. In addition we computed expectation values of the relevant operators with the state (Ĥ D /J)|D 1〉 and the deviation |δ〉 from the exact solution over long times, namely 10 ns. We found that in the very long time scale the |D1〉 ansatz is very close to an exact solution, showing expectation values of the relevant physical observables in the state (Ĥ D /J)|D 1〉 being about 5-6 orders of magnitudes larger than in the deviation state |δ〉. In the intermediate time scale of the ps range such errors, as known from our previous work, are somewhat larger, but still more or less negligibly. Thus we also report results from an investigation of the very short time (in the range 0-0.4 ps) behaviour of the |D1〉 state compared with that of an expansion of the exact solution in powers of time t. This expansion is reliable for about 0.12 ps for special cases as shown in the previous paper. However, the accuracy of the exactly known value of the norm and the expectation value of the Hamiltonian finally indicates up to what time a given expansion is valid, as also shown in the preceding paper. The comparison of the expectation values of the operators representing the relevant physical observables, formed with the third order wave function and with the corresponding results of |D1〉 simulations has shown, that our expansion is valid up to a time of roughly 0.10-0.15 ps. Within this time the second and third order corrections turned out to be not very important. This is due to the fact that our first order state contains already some terms of the expansion, summed up to inifinite order. Further we found good agreement of the results obtained with our expansion and those from the corresponding |D1〉 simulations within the time of about 0.10 ps. At later times, the factors with explicit powers of t in second and third order become dominant, making the expansion meaningless. Possibilities for the use of such expansions for larger times are described. Alltogether we have shown (together with previous work on medium times), that the |D1〉 state, although of approximative nature, is very close to an exact solution of the Davydov model on time scales from some femtoseconds up to nanoseconds. Especially the very small time region is of importance, because in this time a possible soliton formation from the initial excitation would start.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 8
    Digitale Medien
    Digitale Medien
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 87 (1987), S. 443-450 
    ISSN: 1089-7690
    Quelle: AIP Digital Archive
    Thema: Physik , Chemie und Pharmazie
    Notizen: Coupled cluster studies on Li2, on the Li6 ring and on other Li6 clusters are reported. In its linear approximation the coupled cluster method gives a larger fraction of the correlation energy for Li2 than the nonlinear version, although other physical properties like force constant and bond length are described unsatisfactory. The planar Li6 ring is predicted to be stable in the equidistant form. Larger rings tend to have a Peierl's distorted alternant geometry on the Hartree–Fock level. Thus Li behaves somewhat similar to (CH)n, while for Hn also the n=6 ring is distorted. The stability of equidistant six-membered rings is therefore attributed to the existence of rather delocalized 2s electrons. The comparison of the results for Li6 clusters of different symmetry (D6h,Oh,C5v) with similar calculations reported in the literature indicates that the inclusion of p-functions is essential, whereas the size of the s function subspace is not very important.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 9
    Digitale Medien
    Digitale Medien
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 106 (1997), S. 10248-10264 
    ISSN: 1089-7690
    Quelle: AIP Digital Archive
    Thema: Physik , Chemie und Pharmazie
    Notizen: We present the formalism for the correction of the band structure for correlation effects of polymers in the framework of a localized orbital approximation, using the quasiparticle model. For this purpose we use in an ab initio framework Møller–Plesset perturbation theory in second order, the coupled cluster doubles method, and its linear approximation. The formalism is applied to a water stack and two different forms of a water chain as model systems to test the reliability of the approximations involved. From our previous work we know that, e.g., in polyacetylene difficulties due to the localizability of the canonical crystal orbitals do not arise from the π or π* bands, but from bands of σ symmetry. Thus we concentrate in this work again on polyacetylene as an example of a realistic polymer. We find that the localized orbital approximation is quite useful also in the case of band structure corrections due to correlation effects. However, the coupled cluster calculations, in particular, turn out to be computationally very costly for infinite systems. But it seems to us that localized orbital approximations are at the moment the only way to make coupled cluster calculations on realistic polymers with covalent bonds between the unit cells possible at all. © 1997 American Institute of Physics.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 10
    ISSN: 1432-2234
    Schlagwort(e): Mutually consistent field calculations ; solvation energies ; glycine-water-system
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Chemie und Pharmazie
    Notizen: Abstract We have performed calculations of the glycine zwitterion surrounded by water molecules with the help of the mutually consistent field (MCF) method and perturbation theoretical expressions. Two different models for the hydration shell have been chosen, the glycine·6H2O and glycine·12H2O complexes, representing the most probable first and second solvation shell, respectively. To calculate the exchange and charge transfer energy contributions we have applied approximative expressions derived from perturbation theory for weakly overlapping subunits. For the sake of comparison we also calculated the interaction energy in the supermolecule approach for the smaller of the two solvation complexes. Furthermore, we have investigated the part of the potential energy surface which is determined by varying the lengths of the hydrogen bonds between glycine and water in the complex glycine·12H2O using the electrostatic approach. The exchange energy contribution to the interaction energy for different points on the surface was approximated with the help of an analytical expression fitted to three directly calculated points. For the charge transfer energy a polynomial expansion of second order was established on the basis of five values, computed with the aid of the perturbation theoretical expression. To get a more detailed insight in the relatively strong hydrogen bonds between the water molecules and the ionic hydrophilic parts of glycineab initio model studies on NH 4 + ·3H2O and HCOO−·3H2O systems are reported.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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