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  • 1
    ISSN: 1573-5028
    Keywords: cucumber ; light-regulated gene expression ; NADH-dependent hydroxypyruvate reductase ; organ-specific gene expression ; peroxisome ; photorespiration
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The 5′- and 3′-flanking regions of HPRA, a cucumber gene that encodes hydroxypyruvate reductase, were evaluated for regulatory activity with respect to light responsiveness and organ specificity. To define the functional regions of the 5′-flanking region of HPRA, a series of deletions was generated and the remaining portions fused to the β-glucuronidase (GUS) reporter gene (uidA) containing a minimal 35S promoter truncated at −90. The region from −66 to +39 was found to be necessary for light-regulated expression of the uidA reporter gene, while the region from −382 to −67 was found to be necessary for its leaf-specific expression. Further deletion of the HPRA 5′ flanking region to −590 resulted in high levels of root expression, suggesting the presence of a negative regulatory element responsible for silencing root expression of the HPRA gene between −590 and −383. The 3′-flanking region of the HPRA gene downstream of the polyadenylation site contains several sequence motifs resembling regulatory elements present in the promoters of several light-responsive genes. An 823 bp portion of the HPRA 3′-flanking region containing these putative regulatory elements enhanced GUS expression in leaves when placed downstream of the uidA reporter gene in the forward orientation, but not in the reverse orientation. When placed 5′ of the −90 35S promoter, the 823 bp fragment enhanced slightly, independently of orientation, the root tip-specific expression pattern intrinsic to the −90 35S promoter, indicating that in some cases this region can act as a transcriptional enhancer.
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Plant molecular biology 17 (1991), S. 941-947 
    ISSN: 1573-5028
    Keywords: hydroxypyruvate reductase ; light regulation ; peroxisomal enzymes ; photorespiration ; plant gene expression
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Several clones corresponding to the gene encoding NADH-dependent hydroxypyruvate reductase have been isolated from a cucumber genomic library. Restriction mapping indicates the presence of two HPR genes, hpr-A and hpr-B, in the cucumber genome. Examination of the DNAs of individual plants suggests that hpr-A and hpr-B are most likely alleles at a single locus. The sequence of a 6.7 kb genomic fragment that includes the entire transcribed region, 2.2 kb of 5′ flanking sequence, and about 0.8 kb of 3′ flanking sequence reveals the presence of 12 introns in hpr-A. These introns are AT-rich relative to the exons. The donor sequence at the 5′ end of the sixth intron contains an unusual dinucleotide, GC, rather than the nearly invariant GT. Primer extension analysis maps the transcription initiation site to 61 nucleotides upstream of the translation initiation codon. An AT-rich stretch is centered at position −31 with respect to the transcription initiation site, and a potential CCAAT box is centered at position −138. Several elements that are homologous to regulatory elements of other plant genes have been identified in the flanking regions of hpr-A.
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Annals of software engineering 1 (1995), S. 43-55 
    ISSN: 1573-7489
    Keywords: Design metrics ; design metrics analyzer ; metrics model ; software metrics ; software quality
    Source: Springer Online Journal Archives 1860-2000
    Topics: Computer Science
    Notes: Abstract Metric monsters are stumbling blocks that prevent software metrics-guided methodologies from attaining product and process improvement. Metric monsters can occur during the identification, collection or application of software metrics. In our research, we have developed and tested our design metrics over a five-year period and have found them to be excellent predictors of error-prone modules. Based on this research, we will identify some of the monsters that occur in the quantitative analyses of software and its development processes, and present our approach in formulating a design metrics model that avoids these monsters. This model consists of software tools, guidelines and actions for the application of software design metrics.
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  • 4
    ISSN: 1573-5028
    Keywords: cucumber ; gene expression ; hydroxypyruvate reductase ; light regulation ; peroxisomal enzymes ; serine:glyoxylate aminotransferase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The development of peroxisomal enzymes in cotyledons of cucumber seedlings is strongly dependent on light. In light-grown seedlings, activities of two peroxisomal enzymes, hydroxypyruvate reductase (HPR) and serine: glyoxylate aminotransferase (SGAT), were barely detectable until three days postimbibition, after which time both activities increased rapidly and linearly for at least three days. In the dark, the activities of these enzymes increased slightly over the same time period, but only to about 5% to 10% of 7-day light-induced levels. When 51/2-day dark-grown seedlings were transferred into white light, activities of HPR and SGAT began to increase after approximately 8 h. HPR protein was shown by an immunoprecipitation assay to increase concurrently with enzymatic activity in both light- and dark-grown cotyledons. Immunoblotting results suggested that the amounts of SGAT-A and SGAT-B, the two subunits of SGAT, also developed along with SGAT activity. The relative levels of translatable mRNAs encoding HPR, SGAT-A, and SGAT-B were also light-dependent, and increased with a developmental pattern similar to enzyme activity and protein levels in light- and dark-grown cotyledons. In 51/2-day dark-grown cotyledons that were transferred to the light, translatable mRNAs for SGAT-A and SGAT-B began to increase within 1 h of illumination and continued of increase rapidly and linearly for the next 24 h in the light to a new steady-state level that was 45 times that of dark controls. Translatable HPR mRNA exhibited a biphasic pattern of accumulation, with a three-fold increase during the first 6 h of illumination, followed by an additional six-fold increase between 8 and 24 h. The accumulation of translationally active mRNA for both enzymes preceded the accumulation of the corresponding protein and enzyme activity by about 8 h. Our data suggest that the rise in enzyme activity depends on an increase in translatable mRNA for these enzymes and is regulated at a pretranslational level, most likely involving transcription of new mRNA.
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