ALBERT

Description: We generated genome-wide data from 69 Europeans who lived between 8,000-3,000 years ago by enriching ancient DNA libraries for a target set of almost 400,000 polymorphisms. Enrichment of these positions decreases the sequencing required for genome-wide ancient DNA analysis by a median of around 250-fold, allowing us to study an order of magnitude more individuals than previous studies and to obtain new insights about the past. We show that the populations of Western and Far Eastern Europe followed opposite trajectories between 8,000-5,000 years ago. At the beginning of the Neolithic period in Europe, approximately 8,000-7,000 years ago, closely related groups of early farmers appeared in Germany, Hungary and Spain, different from indigenous hunter-gatherers, whereas Russia was inhabited by a distinctive population of hunter-gatherers with high affinity to a approximately 24,000-year-old Siberian. By approximately 6,000-5,000 years ago, farmers throughout much of Europe had more hunter-gatherer ancestry than their predecessors, but in Russia, the Yamnaya steppe herders of this time were descended not only from the preceding eastern European hunter-gatherers, but also from a population of Near Eastern ancestry. Western and Eastern Europe came into contact approximately 4,500 years ago, as the Late Neolithic Corded Ware people from Germany traced approximately 75% of their ancestry to the Yamnaya, documenting a massive migration into the heartland of Europe from its eastern periphery. This steppe ancestry persisted in all sampled central Europeans until at least approximately 3,000 years ago, and is ubiquitous in present-day Europeans. These results provide support for a steppe origin of at least some of the Indo-European languages of Europe.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Haak, Wolfgang -- Lazaridis, Iosif -- Patterson, Nick -- Rohland, Nadin -- Mallick, Swapan -- Llamas, Bastien -- Brandt, Guido -- Nordenfelt, Susanne -- Harney, Eadaoin -- Stewardson, Kristin -- Fu, Qiaomei -- Mittnik, Alissa -- Banffy, Eszter -- Economou, Christos -- Francken, Michael -- Friederich, Susanne -- Pena, Rafael Garrido -- Hallgren, Fredrik -- Khartanovich, Valery -- Khokhlov, Aleksandr -- Kunst, Michael -- Kuznetsov, Pavel -- Meller, Harald -- Mochalov, Oleg -- Moiseyev, Vayacheslav -- Nicklisch, Nicole -- Pichler, Sandra L -- Risch, Roberto -- Rojo Guerra, Manuel A -- Roth, Christina -- Szecsenyi-Nagy, Anna -- Wahl, Joachim -- Meyer, Matthias -- Krause, Johannes -- Brown, Dorcas -- Anthony, David -- Cooper, Alan -- Alt, Kurt Werner -- Reich, David -- GM100233/GM/NIGMS NIH HHS/ -- R01 HG006399/HG/NHGRI NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2015 Jun 11;522(7555):207-11. doi: 10.1038/nature14317. Epub 2015 Mar 2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Australian Centre for Ancient DNA, School of Earth and Environmental Sciences &Environment Institute, University of Adelaide, Adelaide, South Australia 5005, Australia. ; 1] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA. ; Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA. ; 1] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA [3] Howard Hughes Medical Institute, Harvard Medical School, Boston, Massachusetts 02115, USA. ; Institute of Anthropology, Johannes Gutenberg University of Mainz, D-55128 Mainz, Germany. ; 1] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA [3] Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany [4] Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, IVPP, CAS, Beijing 100049, China. ; Institute for Archaeological Sciences, University of Tubingen, D-72070 Tubingen, Germany. ; 1] Institute of Archaeology, Research Centre for the Humanities, Hungarian Academy of Science, H-1014 Budapest, Hungary [2] Romisch Germanische Kommission (RGK) Frankfurt, D-60325 Frankfurt, Germany. ; Archaeological Research Laboratory, Stockholm University, 114 18 Stockholm, Sweden. ; Departments of Paleoanthropology and Archaeogenetics, Senckenberg Center for Human Evolution and Paleoenvironment, University of Tubingen, D-72070 Tubingen, Germany. ; State Office for Heritage Management and Archaeology Saxony-Anhalt and State Museum of Prehistory, D-06114 Halle, Germany. ; Departamento de Prehistoria y Arqueologia, Facultad de Filosofia y Letras, Universidad Autonoma de Madrid, E-28049 Madrid, Spain. ; The Cultural Heritage Foundation, Vasteras 722 12, Sweden. ; Peter the Great Museum of Anthropology and Ethnography (Kunstkamera) RAS, St Petersburg 199034, Russia. ; Volga State Academy of Social Sciences and Humanities, Samara 443099, Russia. ; Deutsches Archaeologisches Institut, Abteilung Madrid, E-28002 Madrid, Spain. ; 1] Institute of Anthropology, Johannes Gutenberg University of Mainz, D-55128 Mainz, Germany [2] State Office for Heritage Management and Archaeology Saxony-Anhalt and State Museum of Prehistory, D-06114 Halle, Germany [3] Danube Private University, A-3500 Krems, Austria. ; Institute for Prehistory and Archaeological Science, University of Basel, CH-4003 Basel, Switzerland. ; Departamento de Prehistoria, Universitat Autonoma de Barcelona, E-08193 Barcelona, Spain. ; Departamento de Prehistoria y Arqueolgia, Universidad de Valladolid, E-47002 Valladolid, Spain. ; 1] Institute of Anthropology, Johannes Gutenberg University of Mainz, D-55128 Mainz, Germany [2] Institute of Archaeology, Research Centre for the Humanities, Hungarian Academy of Science, H-1014 Budapest, Hungary. ; State Office for Cultural Heritage Management Baden-Wurttemberg, Osteology, D-78467 Konstanz, Germany. ; Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany. ; 1] Institute for Archaeological Sciences, University of Tubingen, D-72070 Tubingen, Germany [2] Departments of Paleoanthropology and Archaeogenetics, Senckenberg Center for Human Evolution and Paleoenvironment, University of Tubingen, D-72070 Tubingen, Germany [3] Max Planck Institute for the Science of Human History, D-07745 Jena, Germany. ; Anthropology Department, Hartwick College, Oneonta, New York 13820, USA. ; 1] Institute of Anthropology, Johannes Gutenberg University of Mainz, D-55128 Mainz, Germany [2] State Office for Heritage Management and Archaeology Saxony-Anhalt and State Museum of Prehistory, D-06114 Halle, Germany [3] Danube Private University, A-3500 Krems, Austria [4] Institute for Prehistory and Archaeological Science, University of Basel, CH-4003 Basel, Switzerland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25731166" target="_blank"〉PubMed〈/a〉

Description: The processes that shaped modern European mitochondrial DNA (mtDNA) variation remain unclear. The initial peopling by Palaeolithic hunter-gatherers ~42,000 years ago and the immigration of Neolithic farmers into Europe ~8000 years ago appear to have played important roles but do not explain present-day mtDNA diversity. We generated mtDNA profiles of 364 individuals from prehistoric cultures in Central Europe to perform a chronological study, spanning the Early Neolithic to the Early Bronze Age (5500 to 1550 calibrated years before the common era). We used this transect through time to identify four marked shifts in genetic composition during the Neolithic period, revealing a key role for Late Neolithic cultures in shaping modern Central European genetic diversity.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4039305/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4039305/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Brandt, Guido -- Haak, Wolfgang -- Adler, Christina J -- Roth, Christina -- Szecsenyi-Nagy, Anna -- Karimnia, Sarah -- Moller-Rieker, Sabine -- Meller, Harald -- Ganslmeier, Robert -- Friederich, Susanne -- Dresely, Veit -- Nicklisch, Nicole -- Pickrell, Joseph K -- Sirocko, Frank -- Reich, David -- Cooper, Alan -- Alt, Kurt W -- Genographic Consortium -- R01 GM100233/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2013 Oct 11;342(6155):257-61. doi: 10.1126/science.1241844.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Anthropology, Johannes Gutenberg University of Mainz, Mainz, Germany. brandtg@uni-mainz.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24115443" target="_blank"〉PubMed〈/a〉

Description: Over the last years, installations of wind turbines (WTs) increased worldwide. Owing to negative effects on humans, WTs are often installed in areas with low population density. Because of low anthropogenic noise, these areas are also well suited for sites of seismological stations. As a consequence, WTs are often installed in the same areas as seismological stations. By comparing the noise in recorded data before and after installation of WTs, seismologists noticed a substantial worsening of station quality leading to conflicts between the operators of WTs and earthquake services. In this study, we compare different techniques to reduce or eliminate the disturbing signal from WTs at seismological stations. For this purpose, we selected a seismological station that shows a significant correlation between the power spectral density and the hourly windspeed measurements. Usually, spectral filtering is used to suppress noise in seismic data processing. However, this approach is not effective when noise and signal have overlapping frequency bands which is the case for WT noise. As a first method, we applied the continuous wavelet transform (CWT) on our data to obtain a time-scale representation. From this representation, we estimated a noise threshold function (Langston & Mousavi, 2019) either from noise before the theoretical P-arrival (pre-noise) or using a noise signal from the past with similar ground velocity conditions at the surrounding WTs. Therefore, we installed low cost seismometers at the surrounding WTs to find similar signals at each WT. From these similar signals, we obtain a noise model at the seismological station, which is used to estimate the threshold function. As a second method, we used a denoising autoencoder (DAE) that learns mapping functions to distinguish between noise and signal (Zhu et al., 2019). In our tests, the threshold function performs well when the event is visible in the raw or spectral filtered data, but it fails when WT noise dominates and the event is hidden. In these cases, the DAE removes the WT noise from the data. However, the DAE must be trained with typical noise samples and high signal-to-noise ratio events to distinguish between signal and interfering noise. Using the threshold function and pre-noise can be applied immediately on real-time data and has a low computational cost. Using a noise model from our prerecorded database at the seismological station does not improve the result and it is more time consuming to find similar ground velocity conditions at the surrounding WTs.

Description: poster

Description: FloodRisk is an interdisciplinary project focusing on the effects of mine water level rise in bandoned coal mine regions in Germany. Such effects are heterogeneous ground uplift, stress changes due to the change in pore pressure and the reactivation of potential faults. One of the most directly measurable effects is certainly the induced micro seismicity. It is known from previous studies that the flooding of old mines can lead to a renewed increase level in induced micro seismicity in these regions. In this study the relationship between mine water rise, fluid-induced stress changes and induced seismicity in the Haus Aden dewatering area in the eastern Ruhr area (Germany) will be investigated in more detail. For this purpose, we operate a network of currently 21 short period seismic stations in the region of the former "Bergwerk Ost" colliery, which had the highest seismicity rate in the Ruhr area during active underground coal mining. This network is still to be expanded to cover the entire water drainage area, about 30 Raspberry Shake sensors are waiting for the possibility of installation. Nevertheless, the existing network registered almost 1000 induced micro seismic events in a magnitude range from -0.7 up to 2.6 MLv. Many of these events are spatially clustered and some show quite high waveform similarity. This allows relative localisation and can increase the accuracy of the location. The depth location of the earthquakes, within the limits of localisation accuracy, agrees very well with the distribution of seismicity at the time of active mining. The spatial distribution so far seems to be limited by a large inactive transverse fault in the west. It needs to be clarified what influence this fault has on the propagation of mine water in the underground. The measured temporal trend of the mine water level, after pumps were shut down in mid-2019, shows a strong correlation with the temporal evolution of the observed micro seismicity. In the first months after the pumps are switched off, the water levels at the observation points rise only slowly and isolated microseismic events occur again. In November 2019, the rise in water levels doubled and at the same time, the strongest induced event in the measurement period was recorded with a magnitude of 2.6 MLv . In the following months, the seismicity rate ranged from 8 to 34 events above 0.5 MLv per month, some of which were felt.

Description: Bundesministerium für Bildung und Forschung

Description: poster

Description: The Floodrisk project takes a muti- and interdisciplinary look on the effects of the rise in mine water level in abandoned coal mine regions in Germany. Such effects are heterogeneous ground uplift, stress changes due to the pore pressure changes and the reactivation potential of faults. One of the most directly measurable effects is the induced seismicity. It is known from previous studies that the flooding of old mines can lead to a renewed increase in induced microseismicity in these regions. We focused on the observation of the eastern Ruhr area and investigate in detail the relationship between mine water rise and induced seismicity in the Haus Aden dewatering area. For this purpose, we operate a network of up to 30 short period seismic stations in the region of the former "Bergwerk Ost" colliery, which had the highest seismicity rate in the Ruhr area during active mining. Continuous monitoring of seismicity and mine water levels is available for this region from the active mining phase, through the post-mining phase to flooding. Since the beginning of the flooding, more than 20000 onsets were picked and over 1700 induced events were localised in a magnitude range from -0.7 up to 2.6 MLv. For some larger events, focal mechanisms could be determined. The spatial distribution of hypocentres is divided into two areas, with few events in the central study area and over 95% of earthquakes in its eastern part. Many of these events are spatially clustered and some show quite high waveform similarity. This allows relative localisation to increase the accuracy of the location. Comparing the old galleries,which today serve as the main underground waterways, with the localisations from the relative localisation, strong correlations can be seen. The measured temporal trend of the mine water level, after pumps were shut down in mid-2019, shows a strong correlation with the temporal evolution of the observed micro seismicity. In the first months after the pumps are switched off, the water levels at the observation points rise only slowly and isolated microseismic events occur again. In November 2019, the rise in water levels doubled and at the same time, the strongest induced event in the measurement period was recorded with a magnitude of 2.6 MLv. In the years 2020, 2021 66 and 58 events 〉= MLv 1 were observed, respectively. In contrast to this number only 2- 9 events 〉= MLv 1 per year were observed in the post-minig phase before flooding.

Description: Bundesministerium für Bildung und Forschung

Description: poster

Description: NEXD is an open source software package for the simulation of seismic waves in complex geological media. This includes elastic, viscoelastic, porous and fractured media with complex geometries. For the computation of the wave fields, the nodal discontinuous Galerkin approach (NDG) is used. The NDG approach combines unstructured tetrahedral meshes with an element-wise, high-order spatial interpolation of the wave field based on Lagrange polynomials. NEXD offers capabilities for modeling wave propagation in one-, two- and three-dimensional settings of very different spatial scale with little logistical overhead. It allows the import of external triangular (2D) and tetrahedral (3D) meshes provided by independent meshing software and can be run in a parallel computing environment. The computation of adjoint wavefields and an interface for the computation of waveform sensitivity kernels are offered. The method is verified by means of symmetry tests and the method of exact solutions. The capabilities of NEXD are demonstrated through, for example, a 2D synthetic survey of a geological carbon storage site. The most recent developments have been the inclusion of porous media in 2D and the inversion capabilities to the latest release versions of the 2D and 3D codes as well as the release of the 1D code. NEXD is available on GitHub: https://github.com/seismology-RUB.

Description: poster

Description: Modelling the propagation of seismic waves in porous media gets more and more popular in the seismological community since it is an important but challenging task in the field of computational seismology. The fluid content of, for example, reservoir rocks or soils, and the interaction between the fluid and the rock or between different immiscible fluids has to be taken into account to accurately describe seismic wave propagation through such porous media. Often, numerical models are based on the elastic wave equation and some might include artificially introduced attenuation. This simplifies the problem but only approximates the true physics involved. Hence, the results are also simplified and could lack accuracy or miss phenomena in some applications. The aim of the conducted work was the consistent derivation of a theory for seismic wave propagation in porous media saturated by two immiscible fluids and the accompanying numerical solution for the derived wave equation. The theory is based on Biot's theory of poroelasticity. Starting from the basic conservation equations (energy, momentum, etc.) and generally accepted laws, the theory was derived using a macroscopic approach which demands that the wavelength is significantly larger than the size of the heterogeneities in the medium due to the size of the grains and pores or due to effects on the mesoscopic scale. This condition is usually fulfilled for seismic waves since the typical wavelength of seismic waves is in the order of 10 m to 10 km. Fluid flow is described by a Darcy type flow law and interactions between the fluids by means of capillary pressure curve models. In addition, consistent boundary conditions on interfaces between poroelastic media and elastic or acoustic media are derived from this poroelastic theory itself. The nodal discontinuous Galerkin method is used for the numerical modelling. The poroelastic solver is integrated into the 1D and 2D codes of the larger software package NEXD that uses the nodal discontinuous Galerkin method to solve wave equations. The implementation has been verified using symmetry tests and the method of exact solutions. This work has potential for applications in various scientific fields like, for example, exploration and monitoring of hydrocarbon or geothermal reservoirs as well as CO2 storage sites.

Description: poster