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  • 1
    ISSN: 1573-4951
    Keywords: Cytochromes P450 ; P450 2D6 ; P450 101 ; 3D model ; Active site residues ; Homology building
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Summary A homology model building study of cytochrome P450 2D6 has been carried out based on the crystal structure of cytochrome P450 101. The primary sequences of P450 101 and P450 2D6 were aligned by making use of an automated alignment procedure. This alignment was adjusted manually by matching α-helices (C, D, G, I, J, K and L) and β-sheets (β3/β4) of P450 101 that are proposed to be conserved in membrane-bound P450s (Ouzounis and Melvin [Eur. J. Biochem., 198 (1991) 307]) to the corresponding regions in the primary amino acid sequence of P450 2D6. Furthermore, α-helices B, B′ and F were found to be conserved in P450 2D6. No significant homology between the remaining regions of P450 101 and P450 2D6 could be found and these regions were therefore deleted. A 3D model of P450 2D6 was constructed by copying the coordinates of the residues from the crystal structure of P450 101 to the corresponding residues in P450 2D6. The regions without a significant homology with P450 101 were not incorporated into the model. After energy-minimization of the resulting 3D model of P450 2D6, possible active site residues were identified by fitting the substrates debrisoquine and dextrometorphan into the proposed active site. Both substrates could be positioned into a planar pocket near the heme region formed by residues Val370, Pro371, Leu372, Trp316, and part of the oxygen binding site of P450 2D6. Furthermore, the carboxylate group of either Asp100 or Asp301 was identified as a possible candidate for the proposed interaction with basic nitrogen atom(s) of the substrates. These findings are in accordance with a recently published predictive model for substrates of P450 2D6 [Koymans et al., Chem. Res. Toxicol., 5 (1992) 211].
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1573-4951
    Keywords: α-helical model system ; Conformational analysis ; Counterpoise method ; Hartree-Fock calculations ; Histamine H2 receptor ; Molecular mechanics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Summary Mutation studies on the histamine H2 receptor were reported by Gantz et al. [J. Biol. Chem., 267 (1992) 20840], which indicate that both the mutation of the fifth transmembrane Asp186 (to Ala186) alone or in combination with Thr190 (to Ala190) maintained, albeit partially, the cAMP response to histamine. Recently, we have shown that histamine binds to the histamine H2 receptor as a monocation in its proximal tautomeric form, and, moreover, we suggested that a proton is donated from the receptor towards the tele-position of the agonist, thereby triggering the biological effect [Nederkoorn et al., J. Mol. Graph., 12 (1994) 242; Eriks et al., Mol. Pharmacol., 44 (1993) 886]. These findings result in a close resemblance with the catalytic triad (consisting of Ser, His and Asp) found in serine proteases. Thr190 resembles a triad's serine residue closely, and could also act as a proton donor. However, the mutation of Thr190 to Ala190 — the latter is unable to function as a proton donor — does not completely abolish the agonistic cAMP response. At the fifth transmembrane α-helix of the histamine H2 receptor near the extracellular surface, another amino acid is present, i.e. Tyr182, so an alternative couple of amino acids, Tyr182 and Asp186, could constitute the histamine binding site at the fifth α-helix instead of the (mutated) couple Asp186 and Thr190. In the first part of our present study, this hypothesis is investigated with the aid of an oligopeptide with an α-helical backbone, which represents a part of the fifth transmembrane helix. Both molecular mechanics and ab initio data lead to the conclusion that the Tyr182/Asp186 couple is most likely to act as the binding site for the imidazole ring present in histamine.
    Type of Medium: Electronic Resource
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  • 3
    Publication Date: 2019-01-24
    Description: The advent of UV cameras has recently paved the way to volcanic SO2 flux observations of much improved temporal and spatial resolution, and has thus contributed to expanding use and utility of SO2 fluxes in volcano monitoring. Recently, the first examples of permanent UV camera systems have appeared that are now opening the way to routine fully automated monitoring of the volcanic SO2 flux at high-rate, and continuously (daily hours only). In 2014, using funding from the FP7-ERC project “Bridge” (http://www.bridge.unipa.it/), we deployed a network of 4 permanent UV cameras at Etna and Stromboli volcanoes (Sicily) that has been operating regularly since then. Using a suite of custom-built codes, data streamed by the UV camera are automatically processed and telemetered, allowing nearly real-time visualization and analysis of SO2 fluxes. Here, we summarise the key results obtained during the last 5 years of continuous observations (2014-2018) to demonstrate potentials and challenges in real-time continuous SO2 flux monitoring with UV cameras. We show that the spatially resolved SO2 flux time-series delivered by the UV camera allow effectively tracking migration in volcanic activity from the Central to New South-East Crater (Etna), and shifts in degassing activity along the crater terrace (Stromboli). At both volcanoes, the high temporal of UV cameras allows capturing the escalation in active (strombolian) SO2 degassing that typically precedes onset of paroxysmal (Etna in 2014-2016) or effusive (Stromboli in 2014) activity, and to quantify for the first time the syn- explosive SO2 budget for larger-scale explosions, including 2 paroxysmal lava fountains (Etna) and 1 major explosion (Stromboli). We finally demonstrate the ability of our automatic camera systems to capture temporal changes in SO2 flux regime, and thus to “live” monitoring degassing and eruptive behaviors at active volcanoes.
    Description: Published
    Description: Napoli
    Description: 6V. Pericolosità vulcanica e contributi alla stima del rischio
    Keywords: UV Camera ; SO2 Flux Monitoring ; Etna ; Stromboli
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Conference paper
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  • 4
    Publication Date: 2021-12-23
    Description: At open-vent basaltic volcanoes, resolving the activity escalation that heralds larger, potentially harmful eruptions is challenged by the persistent mild ordinary activity, which often masks the precursory unrest signals related to heightened magma transport from depth. Gas (SO2 and CO2) fluxes at surface are controlled by rate of magma transport and degassing within the magma plumbing system, and thus constitute key parameters to infer deep magma budget and dynamics. Here, we use several year-long (2014-present) gas observations at Etna and Stromboli volcanoes, in Sicily, to provide new evidence for the utility of long-term instrumental gas monitoring in real-time detecting the early phase of unrest prior eruption, and for characterizing syn-eruptive dynamics. To this aim, we use information from a gas monitoring network of permanent ultraviolet (UV) cameras and automatic Multi-Gas instruments that, combined with geophysical observations, allow characterizing changes in degassing and eruptive dynamics at high temporal/spatial resolution. Our results show that the paroxysmal (lava fountaining) explosions that periodically interrupted persistent open-vent activity on Etna (during 2014-2020) were accompanied by systematic, repetitive SO2 emission patterns prior, during, and after eruptions. These allow us identifying the characteristic pre- syn- and post- eruptive degassing regimes, and to establish thresholds in the SO2 flux record that mark phases of unrest. On Stromboli, the much improved temporal/spatial resolution of UV cameras allows resolving the escalation of regular strombolian activity, and its concentration toward its North-east crater, that heralds onset of effusive eruptions. During effusive eruption, although magma level drops in the conduit and explosive summit activity ceases, UV camera observations can still detect explosive gas bursts deep in the conduit while no infrasonic activity is detected. Combining the UV camera-derived SO2 fluxes with CO2/SO2 ratio records measured by the Multi-Gas, the CO2 flux can be inferred. We find that such CO2 flux time-series can allow tracking degassing of deeply stored mafic magma months before Stromboli"s eruptions. We finally show that remotely sensed gas emission and thermal activity can be combined together to characterize the dynamics of shallow magmatic system prior to and during unrest, ultimately helping to define timing of magma re-charging events driving the eruptions.
    Description: Published
    Description: Virtual
    Description: 4V. Processi pre-eruttivi
    Description: 5V. Processi eruttivi e post-eruttivi
    Keywords: Open vent volcanism ; SO2 ; UV cameras
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Conference paper
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  • 5
    Publication Date: 2022-05-06
    Description: We used a one-year long SO2 flux record, which was obtained using a novel algorithm for real-time automatic processing of ultraviolet (UV) camera data, to characterize changes in degassing dynamics at the Mt. Etna volcano in 2016. These SO2 flux records, when combined with independent thermal and seismic evidence, allowed for capturing switches in activity from paroxysmal explosive eruptions to quiescent degassing. We found SO2 fluxes 1.5–2 times higher than the 2016 average (1588 tons/day) during the Etna’s May 16–25 eruptive paroxysmal activity, and mild but detectable SO2 flux increases more than one month before its onset. The SO2 flux typically peaked during a lava fountain. Here, the average SO2 degassing rate was ~158 kg/s, the peak emission was ~260 kg/s, and the total released SO2 mass was ~1700 tons (in 3 hours on 18 May, 2016). Comparison between our data and prior (2014–2015) results revealed systematic SO2 emission patterns prior to, during, and after an Etna’s paroxysmal phases, which allows us to tentatively identify thresholds between pre-eruptive, syn-eruptive, and post-eruptive degassing regimes.
    Description: Published
    Description: id 1201
    Description: 5V. Processi eruttivi e post-eruttivi
    Description: JCR Journal
    Keywords: SO2 fluxes ; UV Camera ; Etna Volcano ; explosive basaltic volcanism
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 6
    Publication Date: 2024-01-26
    Description: We used two and a half years long SO2 flux record, obtained using permanent ultraviolet cameras, to characterize changes in degassing dynamics at Mt. Etna volcano from summer 2014 to the end of 2016. Volcanic activity at Mt. Etna was characterized by persistent open-vent degassing periodically interrupted by intense paroxysmal lava fountaining events (in August 2014, December 2015, and May 2016). Results revealed systematic SO2 emission patterns prior, during, and after Etna’s paroxysmal phases, allowing us to identify thresholds between pre-syn-and post-eruptive degassing regimes. The SO2 flux typically peaked during a lava fountain: in the 18 May 2016 example, the averaged SO2 degassing rate was ~158 kg/s, the peak emission was ~260 kg/s, and the total released SO2 mass was ~1700 tons (in 3h). Paroxysmal explosive activity at NSE crater on 11-15 August 2014 was also associated with intense syneruptive SO2 degassing (at 30-40 kg/s levels on a daily average), and was preceded by onset in degassing activity at the same crater 4 days before. During paroxysmal activity on 3-5 December 2015, the SO2 fluxes peaked at 54-103 kg/s from VOR crater, and was preceded by a sizable increase from 10 kg/s (end of November) up to 45.5 kg/s, two days before. The May 16-25 2016 paroxysmal activity was characterized by intense degassing ~2 times higher than the 2016 average (~18 kg/s) and preceded by mild but detectable SO2 flux increases more than one month before its onset. Taken together, our observations, when combined with independent geophysical (thermal and seismic) evidence, allow us to fully characterize the Etna’s degassing dynamics and contribute to our understanding of its shallow plumbing system.
    Description: Published
    Description: Catania
    Description: OSV2: Complessità dei processi vulcanici: approcci multidisciplinari e multiparametrici
    Keywords: SO2 ; Mt. Etna volcano ; permanent ultraviolet cameras
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Abstract
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  • 7
    Publication Date: 2024-01-25
    Description: The persistent open-vent degassing of Mt. Etna is often punctuated by monthslong paroxysmal sequences characterized by episodes of violent Strombolian to lava fountaining activity. Understanding these gas-fueled transitions from quiescence to eruption requires routine measurement of gas fluxes. Here, we report SO2 flux measurements, obtained from a permanent UV camera system, collected over a two-year-long period spanning two paroxysmal sequences of Etna’s New South East Crater (NSEC) in December 2020/April 2021 and May/ October 2021. In both cases, SO2 flux increased from ≤ 3250 Mg/day during “ordinary” activity to ≥ 4200 Mg/day. We interpret these distinct SO2 degassing regimes in light of seismic and thermal observations and drawing on numerical simulations of sulfur degassing constrained by parental melt sulfur contents in Etna’s hawaiites. We find that initiation of a paroxysmal sequence results from an approximate doubling of the time-averaged rate of magma supply (and degassing) above the sulfur exsolution level (~150 MPa pressure), to 〉4m3/s. This corroborates recent models that argue for the triggering of paroxysmal sequences by escalating supply of volatile-rich magma to a reservoir ~3–4 km below the summit region. The non-stationary nature of magma flow and volcanic degassing we identify highlights the need for sustained surveillance to characterize long-term atmospheric budgets of volcanic volatiles
    Description: Published
    Description: 1115111
    Description: OSV2: Complessità dei processi vulcanici: approcci multidisciplinari e multiparametrici
    Description: JCR Journal
    Keywords: Etna, ; volcanic gases ; SO2 flux ; paroxysms ; UV Camera ; basaltic explosive volcanism ; 04.08. Volcanology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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