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  • P. indicus  (6)
  • Ecology
  • 1
    Publication Date: 2021-05-19
    Description: This study focuses on molecular investigation of two commercial shrimp species of penaeus family namely as : P. merguiensis and P. indicus in order to find and introduce the genetic differentiations and also probable genotypes for monitoring and managing the genetic resources of populations in three major catch areas in the Persian Gulf and the Oman Sea. Only five out of the eight primers for p. merguiensis and four out of the eight primers for P. indicus produced good amplified PCR products with fixed annealing temperature. The rest of the primers were either not easily amplified or produced nonspecific bands. Seven and six alleles were found to be unique to each of the three populations in P.merguiensis and and two populations of P. indicus respectively. Occurrences of heterozygosity deficiency were found at most loci. These heterozygosity deficiencies in observed heterozygosity in compare to expected heterozygosity may be due to inbreeding, genetic drift and consequences of illegal overharvesting of P. merguiensis and P. indicus in the studied areas as well. Deviation from HWE in both studied species was significant in most microsatellite loci (P 〈0.001). We observed deviation from HWE in most loci with hetrozygosity deficits. The genetic variation results showed that the pairwise Fst values were significant between populations in both species. The assignment test for P. merguiensis revealed high gene flow between Hormoz and Jask and restricted genetic flow between Guatr and Hormoz populations .We observed high gene flow between Hormoz and Jask populations for P. indicus. It seems that the changes in immigration patterns of populations between Hormoz, Jask and Guatr areas in both species are depend on the influence of Persian Gulf currents or the life cycle of studied species. Alternatively, the presence of ecological barriers such as mangrove forests may result in restricted genetic flow between Guatr and both Hormoz and Jask populations.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Commercial ; Ecological ; Microsatellite markers ; P.merguiensis ; P. indicus ; PCR ; Molecular ; Species ; Genotype ; Population ; Temperature
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 84pp.
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  • 2
    Publication Date: 2021-05-19
    Description: Genetic knowledge and Gene bank preparation can help to protect biodiversity and detect , species identify , fishing offenses , genetic classification and also identification the faliure cross hybridizations of marine animals . In this study, sampling was performed from Jask, guatr and Hormuz areas, which is the most important habitats for the species studied using bottom trawl. Total DNA extraction was performed using phenol - chloroform method. After relevant studies on this gene primers were designed and in use. After editing the sequences, nucleotide BLAST (Basic Local Alignment Search Tool) was performed using NCBI blast main page. The sequences obtained from each sample were aligned and corrected from any ambiguities and assembled using Bio edit program .Trees were generated using maximum parsimony (MP), a character-based algorithm and neighbor joining (NJ) a distance-based algorithm for phenetic analysis. The distance matrix option of MEGA4 was used to calculate genetic distance according to the Kimura 2-parameter model of sequence evolution. Based on the results obtained, the optical density of 260 to 280 nm in the samples was recorded between 1/8 - 2, indicating good quality DNA samples. Optimized PCR reaction to 16SrRNA and COI gene amplification using the gradient between 48 - 60° C showed that the most suitable criteria for binding primers, 48 and 54 Celsius degrees respectively. The project objectives including the identification of the genetic structure of the species, and draw the phylogenetic trees using two genes 16SrRNA and COI, making identification and registration of specified computer storage and regulate the structure and management of mentioned species by focus on genetic resources 5 species of shrimp (P. semisulcatus ، P. indicus، P. merguiensis ، P. monodon، M. affinis) in the Persia Gulf and Oman Sea through the creation of an integrated network of aquatic genetic resources in the region to try to identify genetic resources and aquatic gene bank. Molecular investigation of mitochondria DNA (mtDNA) using partial sequences of 16S rRNA gene showed relatively low genetic differences between the P. semisulcatus morphotypes. These sequences were able to distinguish between the two morphotypes, and separated them into two distinct clades. Also genetic divergence detected by COI gene analysis was consistently higher. High genetic divergence for COI was observed between the two morphotypes of P.semeisulcatus which emphesise that the gene bank preparation should be perform for this morphotype of this species. This type of analysis could be considered as an important tool to be used in broodstock selection in breeding programs. In this case, different management in broodstocking programs should be performed for two morphotypes of P. semisulcatus which were detected in Persian Gulf. The results of this study show that two Morphotype of P.semisulcatus can be considered as two separate species from genetic aspects. In this regard, it can be assumed that the genetic composition of the studied species is very close together and we've no seen a huge difference in the species except in the green tiger species.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Gene Bank ; mtDNA ; Genetic Resourcess ; 16S rRNA ; Cytochrom Oxidase I ; P. semisulcatus ; P. indicus ; P. merguiensis ; P. monodon ; M. affinis ; Genetic
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 86pp.
    Location Call Number Expected Availability
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  • 3
    Publication Date: 2021-05-19
    Description: This project was designed with for objective on estimation of Biomass and optimum time for catch season of P.merguinsis and M.affinis shrimps. This investigation was carried out monthly by swept area method in coastal waters of Hormozgan province. The optimum time for fishing season in Bandar Abbas to Sirik waters in 2004,2005 and 2006 respectively was about 25/9/2004, 24/9/2005 and 25/9/2006. Total allowable catch ( T.A.C.) for P.merguiensis and M `.affinis estimated in 2004 to 2006 were 600 , 170 tonnes , 850 , 550 tonnes and 650 , 400 tonnes respectively. The densest catch was obtained for P.merguiensis ( from 58/5 to 65/5 %) and the least catch for P.indicus ( from 0/04to 1/1 % ), respectievly.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: P. merguiensis ; P.semisulcatus ; P. indicus ; M.affinis ; M.stebbingi ; P.stylifera ; Biomass ; Fishing season ; Shrimp
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 53pp.
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  • 4
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    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25652 | 18721 | 2018-10-08 08:43:54 | 25652 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: For the first time white spot disease (WSD) was reported in shrimp farms of khoozestan province, in southwest of IRAN in 2002. Then in 2005 the neighbor province, boushehr, was contaminated. In 2008 WSD outbreak reported in sistan-bloochestan province in southeast of Iran. In 2015 all of southern shrimp farms of country except Hormozgan, the middle southern province, which has remained free of WSD, are being contaminated. White Spot disease suspended shrimp culture in thousands hectares of shrimp farms. Considering that white spot disease has not been observed in Hormozgan province yet, the question is; to what extent environmental and management factors participated in preventing WSD outbreak or cause WSD outbreak. In this study (20102012), the effects of environmental factors and management, stressors that decrease immune system function of shrimp are discussed. In addition, the role of pathogen as the main factor of outbreak is discussed. The goal of this study is to define environmental parameters and management practices associates with outbreak of white spot disease in affected provinces and discover reasons of being Hormozgan province free of this disease. In this study the role of the local environmental factors and management practice stressors in susceptibility to WSD was determine. Both the effects of environmental factors in water of ponds including total ammonia, nitrogen, dissolved oxygen, pH, salinity, transparency, and temperature and management issues related to biosecurity are studied. There were overlaps on physical and chemical parameter values obtained in clear areas with contaminated areas .Results of the data analysis suggest that lack of association with WSD incidence was 7 times greater than WSD incidence despite of disease outbreak in sistan-bloochestan province, so other sources of white spot disease virus incidence was suspected in affected areas. Histopathological examinations and polymerase chain reaction (PCR) tests during project performance did not reveal white spot disease virus evidences in post larvae examined from khoozestan province stocked in farms but disease outbreak was happened in that farms , so we suspected to management practice include feed , pond preparation and carrier of disease. Recorded values of temperature and salinity in some months during inspection in Hormozgan province specified stressful condition that may lead to WSD outbreak, however the disease did not appear. Therefore the hypothesis that the water physical and chemical conditions are reasons to prevent disease outbreak in Hormozgan province is being rejected. The policy of Hormozgan’s fishery authorities, to replaced Fenneropenaeus indicus with specific pathogen free Litopenaeus vannamei, that is more resistant to some of diseases, before incidence of WSD in farms and to before being endemic in the Hormozgan province, made an advantage compare to affected southern provinces that introduced Litopenaeus vannamei after WSD prevalence to their farms. However it does not guarantee to maintain current trend of being Hormozgan province farms free of white spot disease. Therefore establishing the principals of biosecurity are strongly emphasized. Strategies taken by the proficient authorities in preparation of SPF shrimp broodstock can be the most important factor in preventing WSD. Regarding biosecurity principals purchased feed must be free of shrimp head powder. Construction the new shrimp farms should be as far as it could be away from contaminated areas.
    Keywords: Aquaculture ; Ecology ; Health ; Iran ; Khouzestan Province ; Boushehr province ; Sistan and Balochestan province ; Hormozgan Province ; Epidemiological study ; WSD ; Fenneropenaeus indicus ; Penaeus vannamei ; Shrimp ; White Spot Disease ; Temperature ; Salinity ; PCR ; Polymerase Chain Reaction ; Ammonia ; Nitrogen ; Dissolved oxygen ; pH ; Transparency
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 468
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  • 5
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    Unknown
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25344 | 18721 | 2018-09-13 12:58:40 | 25344 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: This project was designed with for objective on estimation of Biomass and optimum time for catch season of P.merguinsis and M.affinis shrimps. This investigation was carried out monthly by swept area method in coastal waters of Hormozgan province. The optimum time for fishing season in Bandar Abbas to Sirik waters in 2004,2005 and 2006 respectively was about 25/9/2004, 24/9/2005 and 25/9/2006. Total allowable catch (T.A.C.) for P.merguiensis and M.affinis estimated in 2004 to 2006 were 600, 170 tonnes, 850, 550 tonnes and 650, 400 tonnes respectively. The densest catch was obtained for P.merguiensis (from 58/5 to 65/5 %) and the least catch for P.indicus (from 0/04 to 1/1 % ), respectievly.
    Keywords: Fisheries ; Iran ; Persian Gulf ; Oman Sea ; Hormozgan Province ; Bandar Abbas ; Sirik ; P. merguiensis ; P.semisulcatus ; P. indicus ; M.affinis ; M.stebbingi ; P.stylifera ; Biomass ; Fishing season ; Shrimp
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 53
    Location Call Number Expected Availability
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  • 6
    Publication Date: 2021-07-16
    Description: This study focuses on molecular investigation of two commercial shrimp species of penaeus family namely as : P. merguiensis and P. indicus in order to find and introduce the genetic differentiations and also probable genotypes for monitoring and managing the genetic resources of populations in three major catch areas in the Persian Gulf and the Oman Sea. Only five out of the eight primers for P. merguiensis and four out of the eight primers for P. indicus produced good amplified PCR products with fixed annealing temperature. The rest of the primers were either not easily amplified or produced nonspecific bands. Seven and six alleles were found to be unique to each of the three populations in P.merguiensis and and two populations of P. indicus respectively. Occurrences of heterozygosity deficiency were found at most loci. These heterozygosity deficiencies in observed heterozygosity in compare to expected heterozygosity may be due to inbreeding, genetic drift and consequences of illegal overharvesting of P. merguiensis and P. indicus in the studied areas as well. Deviation from HWE in both studied species was significant in most microsatellite loci (P 〈0.001). We observed deviation from HWE in most loci with hetrozygosity deficits. The genetic variation results showed that the pairwise Fst values were significant between populations in both species. The assignment test for P. merguiensis revealed high gene flow between Hormoz and Jask and restricted genetic flow between Guatr and Hormoz populations .We observed high gene flow between Hormoz and Jask populations for P. indicus. It seems that the changes in immigration patterns of populations between Hormoz, Jask and Guatr areas in both species are depend on the influence of Persian Gulf currents or the life cycle of studied species. Alternatively, the presence of ecological barriers such as mangrove forests may result in restricted genetic flow between Guatr and both Hormoz and Jask populations.
    Keywords: Aquaculture ; Biology ; Iran ; Persian Gulf ; Oman Sea ; Hormoz ; Jask ; Guatr ; Microsatellite markers ; P.merguiensis ; P. indicus ; PCR ; Molecular ; Species ; Genotype ; Population ; Temperature
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 84
    Location Call Number Expected Availability
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  • 7
    facet.materialart.
    Unknown
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25785 | 18721 | 2018-10-13 08:05:51 | 25785 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: Genetic knowledge and Gene bank preparation can help to protect biodiversity and detect , species identify , fishing offenses , genetic classification and also identification the faliure cross hybridizations of marine animals. In this study, sampling was performed from Jask, guatr and Hormuz areas, which is the most important habitats for the species studied using bottom trawl. Total DNA extraction was performed using phenol- chloroform method. After relevant studies on this gene primers were designed and in use. After editing the sequences, nucleotide BLAST (Basic Local Alignment Search Tool) was performed using NCBI blast main page. The sequences obtained from each sample were aligned and corrected from any ambiguities and assembled using Bio edit program. Trees were generated using maximum parsimony (MP), a character-based algorithm and neighbor joining (NJ) a distance-based algorithm for phenetic analysis. The distance matrix option of MEGA4 was used to calculate genetic distance according to the Kimura 2-parameter model of sequence evolution. Based on the results obtained, the optical density of 260 to 280 nm in the samples was recorded between 1/8 - 2, indicating good quality DNA samples. Optimized PCR reaction to 16SrRNA and COI gene amplification using the gradient between 48 - 60° C showed that the most suitable criteria for binding primers, 48 and 54 Celsius degrees respectively. The project objectives including the identification of the genetic structure of the species, and draw the phylogenetic trees using two genes 16SrRNA and COI, making identification and registration of specified computer storage and regulate the structure and management of mentioned species by focus on genetic resources 5 species of shrimp (P. semisulcatus، P. indicus، P. merguiensis ، P. monodon، M. affinis) in the Persia Gulf and Oman Sea through the creation of an integrated network of aquatic genetic resources in the region to try to identify genetic resources and aquatic gene bank. Molecular investigation of mitochondria DNA (mtDNA) using partial sequences of 16S rRNA gene showed relatively low genetic differences between the P. semisulcatus morphotypes. These sequences were able to distinguish between the two morphotypes, and separated them into two distinct clades. Also genetic divergence detected by COI gene analysis was consistently higher. High genetic divergence for COI was observed between the two morphotypes of P.semeisulcatus which emphesise that the gene bank preparation should be perform for this morphotype of this species. This type of analysis could be considered as an important tool to be used in broodstock selection in breeding programs. In this case, different management in broodstocking programs should be performed for two morphotypes of P. semisulcatus which were detected in Persian Gulf. The results of this study show that two Morphotype of P.semisulcatus can be considered as two separate species from genetic aspects. In this regard, it can be assumed that the genetic composition of the studied species is very close together and we've no seen a huge difference in the species except in the green tiger species.
    Keywords: Aquaculture ; Biology ; Iran ; Persian Gulf ; Oman Sea ; Gene Bank ; mtDNA ; Genetic Resourcess ; 16S rRNA ; Cytochrom Oxidase I ; P. semisulcatus ; P. indicus ; P. merguiensis ; P. monodon ; M. affinis ; Genetic
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 86
    Location Call Number Expected Availability
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