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  • 1
    Publication Date: 2004-04-10
    Description: Susceptibility to asthma depends on variation at an unknown number of genetic loci. To identify susceptibility genes on chromosome 7p, we adopted a hierarchical genotyping design, leading to the identification of a 133-kilobase risk-conferring segment containing two genes. One of these coded for an orphan G protein-coupled receptor named GPRA (G protein-coupled receptor for asthma susceptibility), which showed distinct distribution of protein isoforms between bronchial biopsies from healthy and asthmatic individuals. In three cohorts from Finland and Canada, single nucleotide polymorphism-tagged haplotypes associated with high serum immunoglobulin E or asthma. The murine ortholog of GPRA was up-regulated in a mouse model of ovalbumin-induced inflammation. Together, these data implicate GPRA in the pathogenesis of atopy and asthma.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Laitinen, Tarja -- Polvi, Anne -- Rydman, Pia -- Vendelin, Johanna -- Pulkkinen, Ville -- Salmikangas, Paula -- Makela, Siru -- Rehn, Marko -- Pirskanen, Asta -- Rautanen, Anna -- Zucchelli, Marco -- Gullsten, Harriet -- Leino, Marina -- Alenius, Harri -- Petays, Tuula -- Haahtela, Tari -- Laitinen, Annika -- Laprise, Catherine -- Hudson, Thomas J -- Laitinen, Lauri A -- Kere, Juha -- New York, N.Y. -- Science. 2004 Apr 9;304(5668):300-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉GeneOS Limited, 00251 Helsinki, Finland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/15073379" target="_blank"〉PubMed〈/a〉
    Keywords: Algorithms ; Alternative Splicing ; Animals ; Asthma/*genetics/metabolism ; Bronchi/chemistry/cytology ; Chromosomes, Human, Pair 7/*genetics ; Epithelial Cells/chemistry ; Female ; Finland ; Gene Expression ; Genes ; Genetic Linkage ; *Genetic Predisposition to Disease ; Genetic Variation ; Genotype ; *Haplotypes ; Humans ; Hypersensitivity/genetics/metabolism ; Immunoglobulin E/blood ; Inflammation/genetics ; Lung/metabolism ; Male ; Mice ; Myocytes, Smooth Muscle/chemistry ; Polymorphism, Single Nucleotide ; Quebec ; Receptors, G-Protein-Coupled/analysis/*genetics
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2014-02-14
    Description: In acute myeloid leukaemia (AML), the cell of origin, nature and biological consequences of initiating lesions, and order of subsequent mutations remain poorly understood, as AML is typically diagnosed without observation of a pre-leukaemic phase. Here, highly purified haematopoietic stem cells (HSCs), progenitor and mature cell fractions from the blood of AML patients were found to contain recurrent DNMT3A mutations (DNMT3A(mut)) at high allele frequency, but without coincident NPM1 mutations (NPM1c) present in AML blasts. DNMT3A(mut)-bearing HSCs showed a multilineage repopulation advantage over non-mutated HSCs in xenografts, establishing their identity as pre-leukaemic HSCs. Pre-leukaemic HSCs were found in remission samples, indicating that they survive chemotherapy. Therefore DNMT3A(mut) arises early in AML evolution, probably in HSCs, leading to a clonally expanded pool of pre-leukaemic HSCs from which AML evolves. Our findings provide a paradigm for the detection and treatment of pre-leukaemic clones before the acquisition of additional genetic lesions engenders greater therapeutic resistance.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shlush, Liran I -- Zandi, Sasan -- Mitchell, Amanda -- Chen, Weihsu Claire -- Brandwein, Joseph M -- Gupta, Vikas -- Kennedy, James A -- Schimmer, Aaron D -- Schuh, Andre C -- Yee, Karen W -- McLeod, Jessica L -- Doedens, Monica -- Medeiros, Jessie J F -- Marke, Rene -- Kim, Hyeoung Joon -- Lee, Kwon -- McPherson, John D -- Hudson, Thomas J -- HALT Pan-Leukemia Gene Panel Consortium -- Brown, Andrew M K -- Yousif, Fouad -- Trinh, Quang M -- Stein, Lincoln D -- Minden, Mark D -- Wang, Jean C Y -- Dick, John E -- CSC-105367/Canadian Institutes of Health Research/Canada -- R21 CA152613/CA/NCI NIH HHS/ -- England -- Nature. 2014 Feb 20;506(7488):328-33. doi: 10.1038/nature13038. Epub 2014 Feb 12.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Princess Margaret Cancer Centre, University Health Network (UHN), Toronto, Ontario M5G 2M9, Canada [2]. ; Princess Margaret Cancer Centre, University Health Network (UHN), Toronto, Ontario M5G 2M9, Canada. ; 1] Princess Margaret Cancer Centre, University Health Network (UHN), Toronto, Ontario M5G 2M9, Canada [2] Department of Medicine, University of Toronto, Toronto, Ontario M5S 2J7, Canada [3] Division of Medical Oncology and Hematology, UHN, Toronto, Ontario M5G 2M9, Canada. ; 1] Princess Margaret Cancer Centre, University Health Network (UHN), Toronto, Ontario M5G 2M9, Canada [2] Department of Medicine, University of Toronto, Toronto, Ontario M5S 2J7, Canada [3] Division of Medical Oncology and Hematology, UHN, Toronto, Ontario M5G 2M9, Canada [4] Department of Medical Biophysics, University of Toronto, Toronto, Ontario M5G 2M9, Canada. ; 1] Princess Margaret Cancer Centre, University Health Network (UHN), Toronto, Ontario M5G 2M9, Canada [2] Radboud University, Nijmegen Medical Centre, Nijmegen 6500 HB, The Netherlands. ; Chonnam National University Hwasun Hospital, Genome Research Center for Hematopoietic Diseases, Gwangju 519-809, South Korea. ; 1] Department of Medical Biophysics, University of Toronto, Toronto, Ontario M5G 2M9, Canada [2] Ontario Institute for Cancer Research, Toronto, Ontario M5G 0A3, Canada. ; 1] Department of Medical Biophysics, University of Toronto, Toronto, Ontario M5G 2M9, Canada [2] Ontario Institute for Cancer Research, Toronto, Ontario M5G 0A3, Canada [3] Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada. ; Ontario Institute for Cancer Research, Toronto, Ontario M5G 0A3, Canada. ; 1] Ontario Institute for Cancer Research, Toronto, Ontario M5G 0A3, Canada [2] Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada. ; 1] Princess Margaret Cancer Centre, University Health Network (UHN), Toronto, Ontario M5G 2M9, Canada [2] Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24522528" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Differentiation ; Cell Division ; Cell Lineage ; Clone Cells/cytology/metabolism/pathology ; DNA (Cytosine-5-)-Methyltransferase/genetics/metabolism ; Drug Resistance, Neoplasm/drug effects ; Female ; Hematopoiesis ; Hematopoietic Stem Cells/*cytology/drug effects/metabolism/pathology ; Heterografts ; Humans ; Isocitrate Dehydrogenase/genetics ; Leukemia, Myeloid, Acute/diagnosis/drug therapy/genetics/*pathology ; Mice ; Mice, Inbred NOD ; Mice, SCID ; Mutation/genetics ; Neoplasm Transplantation ; Neoplastic Stem Cells/*cytology/drug effects/metabolism/pathology ; Nuclear Proteins/genetics ; Remission Induction ; T-Lymphocytes/metabolism/pathology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2015-02-25
    Description: Immunoglobulin E (IgE) is a central mediator of allergic (atopic) inflammation. Therapies directed against IgE can alleviate hay fever and allergic asthma. Genetic association studies have not yet identified novel therapeutic targets or pathways underlying IgE regulation. We therefore surveyed epigenetic associations between serum IgE concentrations and methylation at loci concentrated in CpG islands genome wide in 95 nuclear pedigrees, using DNA from peripheral blood leukocytes. We validated positive results in additional families and in subjects from the general population. Here we show replicated associations--with a meta-analysis false discovery rate less than 10(-4)--between IgE and low methylation at 36 loci. Genes annotated to these loci encode known eosinophil products, and also implicate phospholipid inflammatory mediators, specific transcription factors and mitochondrial proteins. We confirmed that methylation at these loci differed significantly in isolated eosinophils from subjects with and without asthma and high IgE levels. The top three loci accounted for 13% of IgE variation in the primary subject panel, explaining the tenfold higher variance found compared with that derived from large single-nucleotide polymorphism genome-wide association studies. This study identifies novel therapeutic targets and biomarkers for patient stratification for allergic diseases.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416961/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416961/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Liang, Liming -- Willis-Owen, Saffron A G -- Laprise, Catherine -- Wong, Kenny C C -- Davies, Gwyneth A -- Hudson, Thomas J -- Binia, Aristea -- Hopkin, Julian M -- Yang, Ivana V -- Grundberg, Elin -- Busche, Stephan -- Hudson, Marie -- Ronnblom, Lars -- Pastinen, Tomi M -- Schwartz, David A -- Lathrop, G Mark -- Moffatt, Miriam F -- Cookson, William O C M -- 096964/Wellcome Trust/United Kingdom -- 097117/Wellcome Trust/United Kingdom -- P01-ES18181/ES/NIEHS NIH HHS/ -- R01 HL101251-01/HL/NHLBI NIH HHS/ -- WT 077959/Wellcome Trust/United Kingdom -- WT096964/Wellcome Trust/United Kingdom -- Medical Research Council/United Kingdom -- England -- Nature. 2015 Apr 30;520(7549):670-4. doi: 10.1038/nature14125. Epub 2015 Feb 18.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Departments of Epidemiology and Biostatistics, Harvard School of Public Health, Boston, Massachusetts 02115, USA. ; National Heart and Lung Institute, Imperial College, London SW3 6LY, UK. ; Universite du Quebec a Chicoutimi, Saguenay, Quebec G7H 2B1, Canada. ; Institute of Life Science, College of Medicine, Swansea University, Swansea SA2 8PP, UK. ; 1] Ontario Institute for Cancer Research, Toronto, Ontario M5G 0A3, Canada [2] Departments of Medical Biophysics and Molecular Genetics, University of Toronto, Ontario M5S 1A1, Canada. ; University of Colorado School of Medicine and National Jewish Health, Denver, Colorado 80206, USA. ; Department of Human Genetics, McGill University and Genome Quebec Innovation Centre, Montreal H3A 1B1, Canada. ; Jewish General Hospital and Lady Davis Research Institute, Montreal H3T 1E2, Canada. ; Department of Medical Sciences, SciLifeLab, Uppsala University, Uppsala SE-751 44, Sweden. ; 1] Department of Human Genetics, McGill University and Genome Quebec Innovation Centre, Montreal H3A 1B1, Canada [2] Department of Medical Genetics, McGill University Health Centre, Montreal H3H 1P3, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25707804" target="_blank"〉PubMed〈/a〉
    Keywords: Adolescent ; Adult ; Asthma/blood/genetics ; Child ; CpG Islands/genetics ; DNA Methylation/*genetics ; Eosinophils/cytology/metabolism ; Epigenesis, Genetic/*genetics ; Female ; *Genetic Association Studies ; Genome, Human/*genetics ; Humans ; Immunoglobulin E/*blood ; Inflammation Mediators ; Male ; Middle Aged ; Mitochondrial Proteins/genetics ; Pedigree ; Polymorphism, Single Nucleotide/genetics ; Transcription Factors/genetics ; Young Adult
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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