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  • Atomic, Molecular and Optical Physics  (8)
  • Mutually consistent field calculations  (2)
  • Theoretical, Physical and Computational Chemistry  (2)
  • Guanine tautomers, relative stabilities of ∼  (1)
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  • 1
    ISSN: 1432-2234
    Keywords: Mutually consistent field calculations ; solvation energies ; glycine-water-system
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract We have performed calculations of the glycine zwitterion surrounded by water molecules with the help of the mutually consistent field (MCF) method and perturbation theoretical expressions. Two different models for the hydration shell have been chosen, the glycine·6H2O and glycine·12H2O complexes, representing the most probable first and second solvation shell, respectively. To calculate the exchange and charge transfer energy contributions we have applied approximative expressions derived from perturbation theory for weakly overlapping subunits. For the sake of comparison we also calculated the interaction energy in the supermolecule approach for the smaller of the two solvation complexes. Furthermore, we have investigated the part of the potential energy surface which is determined by varying the lengths of the hydrogen bonds between glycine and water in the complex glycine·12H2O using the electrostatic approach. The exchange energy contribution to the interaction energy for different points on the surface was approximated with the help of an analytical expression fitted to three directly calculated points. For the charge transfer energy a polynomial expansion of second order was established on the basis of five values, computed with the aid of the perturbation theoretical expression. To get a more detailed insight in the relatively strong hydrogen bonds between the water molecules and the ionic hydrophilic parts of glycineab initio model studies on NH 4 + ·3H2O and HCOO−·3H2O systems are reported.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical chemistry accounts 52 (1979), S. 129-145 
    ISSN: 1432-2234
    Keywords: Adenine tautomers, relative stabilities of ∼ ; Guanine tautomers, relative stabilities of ∼
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The relative stabilities of a series of adenine and guanine tautomers have been calculated using anab initio Hartree-Fock-Roothaan SCF MO method. The calculated relative stabilities agree in general with the results of earlier semiempirical studies. According to the present study, tautomeric forms with regular Kekulé structure for the six-membered purine ring are the most stable. The amine-imine tautomerization of purine bases is not likely to be responsible for spontaneous mutations in DNA.
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  • 3
    ISSN: 1432-2234
    Keywords: Mutually consistent field calculations ; solvation energies ; glycine-water-system
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract We have performed calculations of the glycine zwitterion surrounded by water molecules with the help of the mutually consistent field (MCF) method and perturbation theoretical expressions. Two different models for the hydration shell have been chosen, the glycine·6H2O and glycine·12H2O complexes, representing the most probable first and second solvation shell, respectively. To calculate the exchange and charge transfer energy contributions we have applied approximative expressions derived from perturbation theory for weakly overlapping subunits. For the sake of comparison we also calculated the interaction energy in the supermolecule approach for the smaller of the two solvation complexes. Furthermore, we have investigated the part of the potential energy surface which is determined by varying the lengths of the hydrogen bonds between glycine and water in the complex glycine·12H2O using the electrostatic approach. The exchange energy contribution to the interaction energy for different points on the surface was approximated with the help of an analytical expression fitted to three directly calculated points. For the charge transfer energy a polynomial expansion of second order was established on the basis of five values, computed with the aid of the perturbation theoretical expression. To get a more detailed insight in the relatively strong hydrogen bonds between the water molecules and the ionic hydrophilic parts of glycineab initio model studies on NH 4 + ·3H2O and HCOO−·3H2O systems are reported.
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 64 (1997), S. 379-385 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: According to the central dogma of molecular biology, information flows in the living cell from DNA through RNA to proteins. Therefore most investigations of cancer initiation try to explain these effects by carcinogen binding to, or radiation hits on, DNA which lead to the first steps of the malignant transformations. On the other hand, recent detailed theoretical investigations have shown that proteins are good disordered hopping conductors (their conductivity is in the order of good conducting amorphous glasses). Their conductivity can be substantially influenced by binding of chemicals or by the effects of radiation if they cause conformational changes (as recent calculations have shown). These effects can also destroy bonds or generate new bonds in proteins. If the affected proteins are regulatory proteins, they can be inactivated in both ways. Namely, on the basis of Warburg's experiments, one can postulate that if the hindrance of oxygen metabolism leads to fermentation, and with it to the malignant transformation, this means also the hindrance of electron flow in the Szent-Györgyi-Krebs cycle. In other words the hindrance of electron transport in this cycle most probably has the same effect as the lack of oxygen, which in this way most probably leads again to a malignant transformation. Finally the inactivation of regulatory enzymes can influence also the regulation of the expression of oncogenes. If in this way oncogenes become overactivated (or antioncogenes become inactive), the changes started by the inactivation of regulatory enzymes become hereditary. It seems that if we look at the cell as a complicated self-regulatory system, primary changes both at their DNA or regulatory protein molecules caused by external agents can disturb its self-regulation and transform it in this way into another stationary, possibly precancerous, state.   © 1997 John Wiley & Sons, Inc. Int J Quant Chem 64: 379-385, 1997
    Additional Material: 2 Ill.
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 52 (1994), S. 491-506 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Quantum chemical calculations for two different kinds of native proteins (pig insulin and hen egg white lysozyme) were done by the extended negative factor counting method in which the matrix elements have been calculated at the ab initio level with the help of a minimal basis and the simulation of the aqueous solution environment. The hopping conductivities were worked out by the formulas of the random walk theory of Lax and co-workers. The electronic density of states of these native proteins confirmed the conclusions obtained previously from aperiodic model peptides chains. The results show that the ac conductivity vs. frequency curve of these native proteins lies in the range of some typical good inorganic amorphous conductors and thus confirm that proteins, if doped, are amorphous conductors. The behavior of the ac conductivities of the proteins in different ranges of frequencies are discussed. © 1994 John Wiley & Sons, Inc.
    Additional Material: 5 Ill.
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  • 6
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 54 (1995), S. 89-92 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new boundary treatment, a Hartree-Fock (HF) surface potential model, is proposed to deal with the surface effect in the solid-state cluster calculations using the LCAO-MO-SCF ab initio method. The surface potential arises from one or more atoms, which have no basis function and are added to the calculated cluster system. These atoms are placed in such sites so that the HF potential field of the calculated system should possess a point-group symmetry. The surface potential could be found by the corresponding HF potential using a symmetry operator. The fact that a rather symmetric electronic structure of the asymmetric cluster YBa2CuZn2O7 is obtained using the HF surface potential shows that the surface effect in the cluster calculations could be neutralized to a great extent. © 1995 John Wiley & Sons, Inc.
    Additional Material: 2 Ill.
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 51 (1994), S. 343-344 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 8
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 63 (1997), S. 631-635 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: First, several reminiscences are recalled about the author's encounters with such a beautiful person as Professor Jean-Louis Calais. Since Jean-Louis was very much interested - among other things - in the correlation problem of solids, different methods are reviewed for the correlation correction of the energy bands of 1D and 2D periodic systems as well for the levels of 1D nonperiodic chains. The results obtained show a very good agreement with experiment for the fundamental gap and exciton spectra of different polymers, for the mechanical properties of polyethylene, as well for other not-here-described physical properties of different polymeric systems. The coding of these methods for the relativistic case is in progress. © 1997 John Wiley & Sons, Inc.
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  • 9
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 23 (1983), S. 1073-1081 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The negative factor counting method (in its simple and matrix block form) for the determination of the density of states of disordered polymer chains and its applications to different aperiodic organic polymers are reviewed. The problems of the calculation of the correlation energy in large systems like polymers will be discussed. Different ways for the partitioning of an energy band into regions make it possible to perform Møller-Plesset perturbation theoretical calculations on polymers. Applications to hydrogen chains are presented. Finally, possible applications to disordered polymers are also discussed.
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  • 10
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 26 (1984), S. 857-872 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is suggested that the extreme efficiency and specificity observed for chemical reactions in biological systems (compared to chemical reactions occurring under common chemical conditions) is mainly due to special features of these reactions. A key position is ascribed to the role of weak intermolecular interactions (also called noncovalent or van der Waals); in addition, the important role of the entropy and of cyclic or cavitylike shapes of numerous reaction sites, together with the influence of strong local electric fields on transport phenomena and reactivity are discussed. The greatest attention is paid to the applicability of computational methods for evaluation of weak intermolecular interactions, ranging from beyond Hartree - Fock methods to empirical potentials.
    Additional Material: 1 Ill.
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