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  • INTER-RESEARCH  (2)
  • ASLO (Association for the Sciences of Limnology and Oceanography)  (1)
  • Blackwell Publishing Ltd
  • 1
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 47 (2004), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Most widely used medium for cultivation of methanotrophic bacteria from various environments is that proposed in 1970 by Whittenbury. In order to adapt and optimize medium for culturing of methanotrophs from freshwater sediment, media with varying concentrations of substrates, phosphate, nitrate, and other mineral salts were used to enumerate methanotrophs by the most probable number method. High concentrations (〉1 mM) of magnesium and sulfate, and high concentrations of nitrate (〉500 μM) significantly reduced the number of cultured methanotrophs, whereas phosphate in the range of 15–1500 μM had no influence. Also oxygen and carbon dioxide influenced the culturing efficiency, with an optimal mixing ratio of 17% O2 and 3% CO2; the mixing ratio of methane (6–32%) had no effect. A clone library of pmoA genes amplified by PCR from DNA extracted from sediment revealed the presence of both type I and type II methanotrophs. Nonetheless, the cultivation of methanotrophs, also with the improved medium, clearly favored growth of type II methanotrophs of the Methylosinus/Methylocystis group. Although significantly more methanotrophs could be cultured with the modified medium, their diversity did not mirror the diversity of methanotrophs in the sediment sample detected by molecular biology method.
    Type of Medium: Electronic Resource
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  • 2
    Publication Date: 2019-09-24
    Description: Large quantities of methane are stored in hydrates and permafrost within shallow marine sediments in the Arctic Ocean. These reservoirs are highly sensitive to climate warming, but the fate of methane released from sediments is uncertain. Here, we review the principal physical and biogeochemical processes that regulate methane fluxes across the seabed, the fate of this methane in the water column, and potential for its release to the atmosphere. We find that, at present, fluxes of dissolved methane are significantly moderated by anaerobic and aerobic oxidation of methane. If methane fluxes increase then a greater proportion of methane will be transported by advection or in the gas phase, which reduces the efficiency of the methanotrophic sink. Higher freshwater discharge to Arctic shelf seas may increase stratification and inhibit transfer of methane gas to surface waters, although there is some evidence that increased stratification may lead to warming of sub-pycnocline waters, increasing the potential for hydrate dissociation. Loss of sea-ice is likely to increase wind speeds and seaair exchange of methane will consequently increase. Studies of the distribution and cycling of methane beneath and within sea ice are limited, but it seems likely that the sea-air methane flux is higher during melting in seasonally ice-covered regions. Our review reveals that increased observations around especially the anaerobic and aerobic oxidation of methane, bubble transport, and the effects of ice cover, are required to fully understand the linkages and feedback pathways between climate warming and release of methane from marine sediments.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
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  • 3
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    INTER-RESEARCH
    In:  EPIC3Aquatic Microbial Ecology, INTER-RESEARCH, 80, pp. 181-192, ISSN: 0948-3055
    Publication Date: 2017-10-06
    Description: ABSTRACT: Salinity is an important environmental control of aerobic methane oxidation, which reduces the emission of the potent greenhouse gas methane into the atmosphere. The effect of salinity on methane oxidation is especially severe in river estuaries and adjacent coastal waters, which are important sources of methane emission and, at the same time, are usually characterized by pronounced salinity gradients. Using methane oxidation rates determined by a radiotracer technique as a measure of methanotrophic activity, we tested the effect of immediate and gradual salinity changes on pure cultures of methanotrophic bacteria, and natural freshwater (Elbe River) and natural marine (North Sea) methanotrophic populations. According to our results, Methylomonas sp. and Methylosinus trichosporium are resistant to an increase in salinity, whereas Methylovulum sp. and Methylobacter luteus are sensitive to such an increase. Natural methanotrophic populations from freshwater are more resistant to an increase in salinity than those from marine water are to a decrease in salinity. In contrast to an immediate change of salinity, gradual change (1.25 PSU d−1) can attenuate salinity stress. Experiments with the natural populations revealed different reactions to changes in salinity; thus, we assume that the initial composition of the methanotrophic population, i.e. the ratio of sensitive versus resistant strains, also governs the community response to salinity stress.Repeated experiments with the natural populations revealed different reactions to changes of salinity; thus we assume that the initial composition of the methanotrophic population, i.e. the ratio of sensitive and resistant strains, also governs the community response to salinity stress.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 4
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    INTER-RESEARCH
    In:  EPIC3Aquatic Microbial Ecology, INTER-RESEARCH, 83, pp. 35-48, ISSN: 0948-3055
    Publication Date: 2019-05-24
    Description: Shelf sea areas are the primary oceanic source for methane release, the most abundant hydrocarbon in the atmosphere. As such, the southern North Sea’s methane concentration is mainly determined by river runoff and tidal marshes. Within such a highly variable temperate estuary, this study is the first to reveal detailed information on the in situ activity, abundance and community structure of methane oxidizing bacteria along a transect from the marine environment near Helgoland island to the riverine harbor of Hamburg, Germany. The in situ methane oxidation rate was determined with a radio tracer, and methane concentration with the head-space method. Abundance and diversity of the methanotrophic bacterial community in the water column was assessed with quantitative polymerase chain reaction for the particulate methane monooxygenase and monooxygenase intergenic spacer analysis. Median abundances ranged from 2.8 × 104 cells l−1 in the marine environment to 7.5 × 105 cells l−1 in the riverine environment. Except for salinity, no conclusive linear correlation between any environmental parameter and the abundance of methanotrophs could be determined. Relating activity with abundance of methanotrophs showed that about 70% of the population is inactive, especially in the coastal and marine environment. This study found distinct operational taxonomic unit (OTU) community compositions among the 3 environmental categories (river, coast, marine). Several identified OTUs have been reported previously and imply a wide geographic occurrence. Overall, we propose that salinity is the most important driver of differing communities in the riverine, coastal and marine environment.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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