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  • Geophysics  (138)
  • ddc:330
  • METEOROLOGY AND CLIMATOLOGY
  • Models, Molecular
  • 1995-1999  (141)
  • 1
    Publication Date: 1996-12-20
    Description: Enoyl reductase (ENR), an enzyme involved in fatty acid biosynthesis, is the target for antibacterial diazaborines and the front-line antituberculosis drug isoniazid. Analysis of the structures of complexes of Escherichia coli ENR with nicotinamide adenine dinucleotide and either thienodiazaborine or benzodiazaborine revealed the formation of a covalent bond between the 2' hydroxyl of the nicotinamide ribose and a boron atom in the drugs to generate a tight, noncovalently bound bisubstrate analog. This analysis has implications for the structure-based design of inhibitors of ENR, and similarities to other oxidoreductases suggest that mimicking this molecular linkage may have generic applications in other areas of medicinal chemistry.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baldock, C -- Rafferty, J B -- Sedelnikova, S E -- Baker, P J -- Stuitje, A R -- Slabas, A R -- Hawkes, T R -- Rice, D W -- New York, N.Y. -- Science. 1996 Dec 20;274(5295):2107-10.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Krebs Institute for Biomolecular Research, Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, UK. D.Rice@sheffield.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/8953047" target="_blank"〉PubMed〈/a〉
    Keywords: Anti-Bacterial Agents/*metabolism/pharmacology ; Binding Sites ; Boron Compounds/*metabolism/pharmacology ; Crystallography, X-Ray ; Drug Design ; Drug Resistance, Microbial ; Enoyl-(Acyl-Carrier-Protein) Reductase (NADH) ; Enzyme Inhibitors/*metabolism/pharmacology ; Escherichia coli/enzymology ; Escherichia coli Proteins ; Fatty Acid Synthase, Type II ; Fatty Acid Synthases/antagonists & inhibitors/*chemistry/metabolism ; Hydrogen Bonding ; Models, Molecular ; NAD/*metabolism ; Oxidoreductases/antagonists & inhibitors/*chemistry/metabolism ; Protein Conformation ; Protein Structure, Secondary
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 1996-10-18
    Description: The Escherichia coli DNA binding protein RuvA acts in concert with the helicase RuvB to drive branch migration of Holliday intermediates during recombination and DNA repair. The atomic structure of RuvA was determined at a resolution of 1.9 angstroms. Four monomers of RuvA are related by fourfold symmetry in a manner reminiscent of a four-petaled flower. The four DNA duplex arms of a Holliday junction can be modeled in a square planar configuration and docked into grooves on the concave surface of the protein around a central pin that may facilitate strand separation during the migration reaction. The model presented reveals how a RuvAB-junction complex may also accommodate the resolvase RuvC.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rafferty, J B -- Sedelnikova, S E -- Hargreaves, D -- Artymiuk, P J -- Baker, P J -- Sharples, G J -- Mahdi, A A -- Lloyd, R G -- Rice, D W -- Wellcome Trust/United Kingdom -- New York, N.Y. -- Science. 1996 Oct 18;274(5286):415-21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Krebs Institute, Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2TN, UK. d.rice@sheffield.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/8832889" target="_blank"〉PubMed〈/a〉
    Keywords: Bacterial Proteins/*chemistry/metabolism ; Base Composition ; Crystallography, X-Ray ; DNA Helicases/metabolism ; DNA, Bacterial/chemistry/*metabolism ; DNA-Binding Proteins/*chemistry/metabolism ; Endodeoxyribonucleases/metabolism ; Escherichia coli ; *Escherichia coli Proteins ; Hydrogen Bonding ; Models, Molecular ; *Nucleic Acid Conformation ; Oligodeoxyribonucleotides/chemistry/metabolism ; *Protein Conformation ; Protein Structure, Secondary ; Protein Structure, Tertiary ; *Recombination, Genetic
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2011-08-24
    Description: The deployment of a space-based Doppler lidar would provide information that is fundamental to advancing the understanding and prediction of weather and climate. This paper reviews the concepts of wind measurement by Doppler lidar, highlights the results of some observing system simulation experiments with lidar winds, and discusses the important advances in earth system science anticipated with lidar winds. Observing system simulation experiments, conducted using two different general circulation models, have shown (1) that there is a significant improvement in the forecast accuracy over the Southern Hemisphere and tropical oceans resulting from the assimilation of simulated satellite wind data, and (2) that wind data are significantly more effective than temperature or moisture data in controlling analysis error. Because accurate wind observations are currently almost entirely unavailable for the vast majority of tropical cyclones worldwide, lidar winds have the potential to substan- tially improve tropical cyclone forecasts. Similarly, to improve water vapor flux divergence calculations, a direct measure of the ageostrophic wind is needed since the present level of uncer- tainty cannot be reduced with better temperature and moisture soundings alone.
    Keywords: METEOROLOGY AND CLIMATOLOGY
    Type: American Meteorological Society, Bulletin (ISSN 0003-0007); 76; 6; p. 869-888
    Format: text
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  • 4
    Publication Date: 2019-06-28
    Description: Time series models successfully reproduce or predict geomagnetic activity indices from solar wind parameters. A method is presented that converts a type of nonlinear filter, the nonlinear Autoregressive Moving Average (ARMA) model to the nonlinear damped oscillator physical model. The oscillator parameters, the growth and decay, the oscillation frequencies and the coupling strength to the input are derived from the filter coefficients. Mathematical methods are derived to obtain unique and consistent filter coefficients while keeping the prediction error low. These methods are applied to an oscillator model for the Dst geomagnetic index driven by the solar wind input. A data set is examined in two ways: the model parameters are calculated as averages over short time intervals, and a nonlinear ARMA model is calculated and the model parameters are derived as a function of the phase space.
    Keywords: Geophysics
    Type: ; 639-644
    Format: text
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  • 5
    Publication Date: 2019-06-28
    Description: The recovery of a high resolution geopotential from satellite gradiometer observations motivates the examination of high performance computational techniques. The primary subject matter addresses specifically the use of satellite gradiometer and GPS observations to form and invert the normal matrix associated with a large degree and order geopotential solution. Memory resident and out-of-core parallel linear algebra techniques along with data parallel batch algorithms form the foundation of the least squares application structure. A secondary topic includes the adoption of object oriented programming techniques to enhance modularity and reusability of code. Applications implementing the parallel and object oriented methods successfully calculate the degree variance for a degree and order 110 geopotential solution on 32 processors of the Cray T3E. The memory resident gradiometer application exhibits an overall application performance of 5.4 Gflops, and the out-of-core linear solver exhibits an overall performance of 2.4 Gflops. The combination solution derived from a sun synchronous gradiometer orbit produce average geoid height variances of 17 millimeters.
    Keywords: Geophysics
    Type: NASA/CR-97-205884 , NAS 1.26:205884 , CSR-97-5
    Format: application/pdf
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  • 6
    Publication Date: 2019-07-13
    Description: Multispacecraft data from the upstream solar wind, polar cusp, and inner magnetotail are used to show that the polar ionosphere responds within a few minutes to a southward IMF turning, whereas the inner tail signatures are visible within ten min from the southward turning. Comparison of two subsequent substorm onsets, one during southward and the other during northward IMF, demonstrates the dependence of the expansion phase characteristics on the external driving conditions. Both onsets are shown to have initiated in the midtail, with signatures in the inner tail and auroral oval following a few minutes later.
    Keywords: Geophysics
    Type: NASA-CR-205242 , Paper-97GL00816 , NAS 1.26:205242 , Geophysical Research Letters (ISSN 0094-8534); 24; 8; 983-986
    Format: application/pdf
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  • 7
    Publication Date: 2019-07-17
    Description: We present the analysis of a coordinated set of observations from the POLAR Ultraviolet Imager (UVI), ground magnetometers, incoherent scatter radar, solar wind monitors, DMSP and GOES satellites, focused on a traveling convection vortex (TCV) event on 24th July 1996. Starting at approximately 10:48 UT, around magnetometers in Greenland and northern Canada observe pulsations consistent with the passing overhead of a series of alternating TCV filed-aligned current pairs. Azimuthal scans by the Sondrestrom incoherent scatter radar located near Kangerlussuaq (formerly Sondrestrom), Greenland, at this time show strong modulation in the strength and direction of ionospheric plasma flow. The magnetometer pulsations grow in magnitude over the next hour, peaking in intensity at 11:39 UT, at which time images form the UVI instrument show a localized intensification of auroral emissions over central and western Greenland. Subsequent images show the intensification grow in strength and propagate westward (tailward) until approximately 11:58 UT at which time the intensification fades. These observations are consistent with the westward passage of two pairs of moderately intense TCVs over central Greenland followed by a third very intense TCV pair. The intensification of auroral emissions at 11:39 UT is associated with the trailing vortex of the third TCV pair, thought to be the result of an upward field aligned current. The modulated flow observed by the radar is the result of the strong electric fields associated with the impulsive TCV related field aligned current systems as they pass through the field of view of the radar. Measurements of the solar wind from the V;IND and IMP-8 spacecraft suggest that a pressure change may be responsible for triggering the first two pairs of TCVS, and that a subsequent sudden change in the orientation of the interplanetary magnetic field may have produced the intensification of the third TCV pair and the associated auroral brightening. Magnetometer data from the GOES satellite located over the eastern United States at geostationary orbit is consistent with a series of field-aligned moving tailward past the satellite. DMSP particle data indicated that the TCVs occur on field lines which map to the boundary plasma sheet (BPS).
    Keywords: Geophysics
    Format: text
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  • 8
    Publication Date: 2019-07-17
    Description: Coordinated analysis of data from the POLAR UVI instrument, ground magnetometers, incoherent scatter radar, solar wind monitors IMP-8 and WIND, and DMSP satellite is focused on a traveling convection vortex (TCV) event on 24 July 1966. Starting at 10:48 UT, ground magnetometers in Greenland and eastern Canada measure pulsations consistent with the passing overhead of a series of alternating TCV field-aligned current pairs. Sondrestrom incoherent scatter radar measures strong modulation of the strength and direction of ionospheric plasma flow, The magnetometer pulsations grow in magnitude over the next hour, peaking in intensity at 11:39 UT, at which time the UVI instrument measures a localized intensification of auroral emissions over central and western Greenland. Subsequent images show the intensification grow in strength and propagate westward (tailward) until approximately 11:58 UT at which time the emissions fade. These observations are consistent with the westward passage of two pairs of moderately intense TCVs over central Greenland followed by a third very intense TCV pair. The intensification of auroral emissions at 11:39 UT is associated with the trailing vortex of the third TCV pair, thought to be the result of an upward field-aligned current. Measurements of the solar wind suggest that a pressure change may be responsible for triggering the first two pairs of TCVS, and that a subsequent sudden change in orientation of the IMF may have produced the intensification of the third TCV pair and the associated aurora] brightening. DMSP particle data indicate that the TCVs occur on field lines which map to the boundary plasma sheet or outer edge of the low latitude boundary layer.
    Keywords: Geophysics
    Type: Dec 08, 1997 - Dec 12, 1997; San Francisco, CA; United States
    Format: text
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  • 9
    Publication Date: 2019-07-10
    Description: The Global Geospace Science Program (GGS) is designed to improve greatly the understanding of the flow of energy, mass and momentum in the solar-terrestrial environment with particular emphasis on "Geospace". The Global Geospace Science Program is the US contribution to the International Solar-Terrestrial Physics (ISTP) Science Initiative. This CD-ROM issue describes the WIND and POLAR spacecraft, the scientific experiments carried onboard, the Theoretical and Ground Based investigations which constitute the US Global Geospace Science Program and the ISTP Data Systems which support the data acquisition and analysis effort. The International Solar-Terrestrial Physics Program (ISTP) Key Parameter Visualization Tool (KPVT), provided on the CD-ROM, was developed at the ISTP Science Planning and Operations Facility (SPOF). The KPVT is a generic software package for visualizing the key parameter data produced from all ISTP missions, interactively and simultaneously. The tool is designed to facilitate correlative displays of ISTP data from multiple spacecraft and instruments, and thus the selection of candidate events and data quality control. The software, written in IDL, includes a graphical/widget user interface, and runs on many platforms, including various UNIX workstations, Alpha/Open VMS, Macintosh (680x0 and PowerPC), and PC/Windows NT, Windows 3.1, and Windows 95.
    Keywords: Geophysics
    Type: NP-1999(04)-056-GSFC
    Format: text
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  • 10
    Publication Date: 2019-07-10
    Description: The Global Geospace Science Program (GGS) is designed to improve greatly the understanding of the flow of energy, mass and momentum in the solar-terrestrial environment with particular emphasis on "Geospace". The Global Geospace Science Program is the US contribution to the International Solar-Terrestrial Physics (ISTP) Science Initiative. This CD-ROM issue describes the WIND and POLAR spacecraft, the scientific experiments carried onboard, the Theoretical and Ground Based investigations which constitute the US Global Geospace Science Program and the ISTP Data Systems which support the data acquisition and analysis effort. The International Solar-Terrestrial Physics Program (ISTP) Key Parameter Visualization Tool (KPVT), provided on the CD-ROM, was developed at the ISTP Science Planning and Operations Facility (SPOF). The KPVT is a generic software package for visualizing the key parameter data produced from all ISTP missions, interactively and simultaneously. The tool is designed to facilitate correlative displays of ISTP data from multiple spacecraft and instruments, and thus the selection of candidate events and data quality control. The software, written in IDL, includes a graphical/widget user interface, and runs on many platforms, including various UNIX workstations, Alpha/Open VMS, Macintosh (680x0 and PowerPC), and PC/Windows NT, Windows 3.1, and Windows 95.
    Keywords: Geophysics
    Type: NP-1999(04)-077-GSFC
    Format: text
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