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  • 2010-2014  (991)
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  • 1
    Publication Date: 2013-05-31
    Description: Background: This study compares Mycobacterium tuberculosis culture isolation and drug sensitivity testing (DST) using solid (LJ) and liquid (BACTEC-MGIT-960) media in Nigeria. Methods: This was a cross sectional survey of adults attending reference centres in Abuja, Ibadan and Nnewi with a new diagnosis of pulmonary tuberculosis (TB) or having failed the first-line TB treatment. Patients were requested to provide three sputum specimens for smear-microscopy and culture on LJ and BACTEC-MGIT-960. Positive cultures underwent DST for streptomycin, isoniazid, rifampicin and ethambutol. Results: 527 specimens were cultured. 428 (81%) were positive with BACTEC-MGIT-960, 59 (11%) negative, 36 (7%) contaminated and 4 (1%) had non-tuberculosis mycobacteria (NTM). 411 (78%) LJ cultures were positive, 89 (17%) negative, 22 (4%) contaminated and 5 (1%) had NTM. The mean (SD) detection time was 11 (6) and 30 (11) days for BACTEC-MGIT-960 and LJ. DST patterns were compared in the 389 concordant positive BACTEC-MGIT-960 and LJ cultures. Rifampicin and isoniazid DST patterns were similar. Streptomycin resistance was detected more frequently with LJ than BACTEC-MGIT-960 and ethambutol resistance was detected more frequently with BACTEC-MGIT-960 than LJ, but differences were not statistically significant. MDR-TB was detected by 27 cases by LJ and 25 by BACTEC-MGIT-960 and using both methods detected 29 cases. Conclusions: There was a substantial degree of agreement between the two methods. However using the two in tandem increased the number of culture-positive patients and with MDR-TB. The choice of culture method should depend on local availability, cost and test performance characteristics.
    Electronic ISSN: 1756-0500
    Topics: Biology , Medicine
    Published by BioMed Central
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  • 2
  • 3
    Publication Date: 2020-02-12
    Description: We examine mid- to late Holocene centennial-scale climate variability in Ireland using proxy data from peatlands, lakes and a speleothem. A high degree of between-record variability is apparent in the proxy data and significant chronological uncertainties are present. However, tephra layers provide a robust tool for correlation and improve the chronological precision of the records. Although we can find no statistically significant coherence in the dataset as a whole, a selection of high-quality peatland water table reconstructions co-vary more than would be expected by chance alone. A locally weighted regression model with bootstrapping can be used to construct a ‘best-estimate’ palaeoclimatic reconstruction from these datasets. Visual comparison and cross-wavelet analysis of peatland water table compilations from Ireland and Northern Britain shows that there are some periods of coherence between these records. Some terrestrial palaeoclimatic changes in Ireland appear to coincide with changes in the North Atlantic thermohaline circulation and solar activity. However, these relationships are inconsistent and may be obscured by chronological uncertainties. We conclude by suggesting an agenda for future Holocene climate research in Ireland.
    Keywords: 550 - Earth sciences
    Type: info:eu-repo/semantics/article
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  • 4
    Publication Date: 2019-03-08
    Description: Coccolithophores have influenced the global climate for over 200 million years1. These marine phytoplankton can account for 20 per cent of total carbon fixation in some systems2. They form blooms that can occupy hundreds of thousands of square kilometres and are distinguished by their elegantly sculpted calcium carbonate exoskeletons (coccoliths), rendering themvisible fromspace3.Although coccolithophores export carbon in the form of organic matter and calcite to the sea floor, they also release CO2 in the calcification process. Hence, they have a complex influence on the carbon cycle, driving either CO2 production or uptake, sequestration and export to the deep ocean4. Here we report the first haptophyte reference genome, from the coccolithophore Emiliania huxleyi strain CCMP1516, and sequences from 13 additional isolates. Our analyses reveal a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome. Comparisons across strains demonstrate thatE. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires. Genome variability within this species complex seems to underpin its capacity both to thrive in habitats ranging from the equator to the subarctic and to form large-scale episodic blooms under a wide variety of environmental conditions.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 5
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    Department of Water, Land and Biodiversity Conservation, Adelaide, SA
    Publication Date: 2021-03-29
    Description: Transmissivity and storage coefficients are important properties in the characterisation of aquifers. Transmissivities and storage coefficients have been calculated from aquifer test programs for all known wells from the Tertiary Limestone Aquifer in the Lower South-East and located within the study area. The Tertiary Limestone Aquifer consists of the Gambier Limestone in the Gambier Basin. Transmissivity and specific yield data for the Tertiary Limestone Aquifer (unconfined aquifer) were collated and examined for their reliability. Most of the reported data were of low reliability. Limited data was collected from aquifer tests using one or more observation wells. Some of the observation wells were completed within different intervals from that of the production well. Therefore the specific yield values obtained were rated ‘low’ reliability. Specific capacity data are usually more abundant than aquifer test data and is used as a measure of the productivity of a well. An empirical relationship was established between transmissivity values calculated from aquifer tests and their related specific capacity data. The resulting best-fit line is T = 3.95 x SC0.89 with R2 = 82.
    Description: report
    Keywords: 551 ; UDY 000 ; VBQ 800 ; VBQ 900 ; Australien und Ozeanien {Hydrologie} ; Aquifere {Hydrogeologie} ; Hydrogeologie einzelner Regionen
    Language: English
    Type: article , publishedVersion
    Format: 48 S.
    Format: application/pdf
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  • 6
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e53889, doi:10.1371/journal.pone.0053889.
    Description: Thecosome pteropods (Mollusca, Gastropoda) are an ecologically important, diverse, and ubiquitous group of holoplanktonic animals that are the focus of intense research interest due to their external aragonite shell and vulnerability to ocean acidification. Characterizing the response of these animals to low pH and other environmental stressors has been hampered by continued uncertainty in their taxonomic identification. An example of this confusion in species assignment is found in the genus Diacavolinia. All members of this genus were originally indentified as a single species, Cavolinia longirostris, but over the past fifty years the taxonomy has been revisited multiple times; currently the genus comprises 22 different species. This study examines five species of Diacavolinia, including four sampled in the Northeast Atlantic (78 individuals) and one from the Eastern tropical North Pacific (15 individuals). Diacavolina were identified to species based on morphological characteristics according to the current taxonomy, photographed, and then used to determine the sequence of the “DNA barcoding” region of the cytochrome c oxidase subunit I (COI). Specimens from the Atlantic, despite distinct differences in shell morphology, showed polyphyly and a genetic divergence of 〈3% (K2P distance) whereas the Pacific and Atlantic samples were more distant (~19%). Comparisons of Diacavolinia spp. with other Cavolinia spp. reveal larger distances (~24%). These results indicate that specimens from the Atlantic comprise a single monophyletic species and suggest possible species-level divergence between Atlantic and Pacific populations. The findings support the maintenance of Diacavolinia as a separate genus, yet emphasize the inadequacy of our current taxonomic understanding of pteropods. They highlight the need for accurate species identifications to support estimates of biodiversity, range extent and natural exposure of these planktonic calcifiers to environmental variability; furthermore, the apparent variation of the pteropods shell may have implications for our understanding of the species’ sensitivity to ocean acidification.
    Description: This material is based upon work supported by the National Science Foundation under Grant Number OCE-0928801. AEM was funded through the WHOI Postdoctoral Scholarship. Support to LBB was provided by the College of Liberal Arts & Sciences, University of Connecticut; and by the Census of Marine Life/Alfred P. Sloan Foundation.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 7
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    Woods Hole Oceanographic Institution
    Publication Date: 2022-05-25
    Description: Flow sensors based on the principle of electromagnetic induction were investigated as alternatives to commonly used mechanical devices utilizing rotors and propellers. Prototype sensors were constructed showing considerable promise. Measurement accuracy in excess of .01 knot seems feasible with devices suited to long term battery operation. The inertial effects and many of the reliability problems inherent in moving part devices would be overcome by use of an electromagnetic sensor.
    Description: Prepared for the National Science Foundation under Grant GA-31987
    Keywords: Water current meters ; Electromagnetic induction
    Repository Name: Woods Hole Open Access Server
    Type: Technical Report
    Format: application/pdf
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  • 8
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2006. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 317 (2006): 297-310, doi:10.3354/meps317297.
    Description: The Western Antarctic Peninsula (WAP) is a biologically rich area supporting large standing stocks of krill and top predators (including whales, seals and seabirds). Physical forcing greatly affects productivity, recruitment, survival and distribution of krill in this area. In turn, such interactions are likely to affect the distribution of baleen whales. The Southern Ocean GLOBEC research program aims to explore the relationships and interactions between the environment, krill and predators around Marguerite Bay (WAP) in autumn 2001 and 2002. Bathymetric and environmental variables including acoustic backscattering as an indicator of prey abundance were used to model whale distribution patterns. We used an iterative approach employing (1) classification and regression tree (CART) models to identify oceanographic and ecological variables contributing to variability in humpback Megaptera novaeangliae and minke Balaenoptera acutorstrata whale distribution, and (2) generalized additive models (GAMs) to elucidate functional ecological relationships between these variables and whale distribution. The CART models indicated that the cetacean distribution was tightly coupled with zooplankton acoustic volume backscatter in the upper (25 to 100 m), and middle (100 to 300 m) portions of the water column. Whale distribution was also related to distance from the ice edge and bathymetric slope. The GAMs indicated a persistent, strong, positive relationship between increasing zooplankton volume and whale relative abundance. Furthermore, there was a lower limit for averaged acoustic volume backscatter of zooplankton below which the relationship between whales and prey was not significant. The GAMs also supported an annual relationship between whale distribution, distance from the ice edge and bathymetric slope, suggesting that these are important features for aggregating prey. Our results demonstrate that during the 2 yr study, whales were consistently and predictably associated with the distribution of zooplankton. Thus, humpback and minke whales may be able to locate physical features and oceanographic processes that enhance prey aggregation.
    Description: Resources for this project were provided by the National Science Foundation Office of Polar Programs grant OPP-9910307 and the International Whaling Commission. This work represents a portion of A.S.F.’s dissertation, funded by a Duke University Marine Laboratory Fellowship.
    Keywords: Whale distribution ; Zooplankton ; Ice edge ; Antarctica ; SO GLOBEC ; CART ; GAM
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 9
    Publication Date: 2022-05-25
    Description: © The Author(s), 2011. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 6 (2011): e27693, doi:10.1371/journal.pone.0027693.
    Description: Atlantic bluefin tuna (Thunnus thynnus) is considered to be overfished, but the status of its populations has been debated, partly because of uncertainties regarding the effects of mixing on fishing grounds. A better understanding of spatial structure and mixing may help fisheries managers to successfully rebuild populations to sustainable levels while maximizing catches. We formulate a new seasonally and spatially explicit fisheries model that is fitted to conventional and electronic tag data, historic catch-at-age reconstructions, and otolith microchemistry stock-composition data to improve the capacity to assess past, current, and future population sizes of Atlantic bluefin tuna. We apply the model to estimate spatial and temporal mixing of the eastern (Mediterranean) and western (Gulf of Mexico) populations, and to reconstruct abundances from 1950 to 2008. We show that western and eastern populations have been reduced to 17% and 33%, respectively, of 1950 spawning stock biomass levels. Overfishing to below the biomass that produces maximum sustainable yield occurred in the 1960s and the late 1990s for western and eastern populations, respectively. The model predicts that mixing depends on season, ontogeny, and location, and is highest in the western Atlantic. Assuming that future catches are zero, western and eastern populations are predicted to recover to levels at maximum sustainable yield by 2025 and 2015, respectively. However, the western population will not recover with catches of 1750 and 12,900 tonnes (the “rebuilding quotas”) in the western and eastern Atlantic, respectively, with or without closures in the Gulf of Mexico. If future catches are double the rebuilding quotas, then rebuilding of both populations will be compromised. If fishing were to continue in the eastern Atlantic at the unregulated levels of 2007, both stocks would continue to decline. Since populations mix on North Atlantic foraging grounds, successful rebuilding policies will benefit from trans-Atlantic cooperation.
    Description: This work was supported by grants from the TAG A Giant Foundation, the Monterey Bay Aquarium Foundation, the Lenfest Ocean Program, Washington, DC, USA, the Canadian Fisheries and Oceans International Governance Strategies Fund and the National Oceanic and Atmospheric Administration (NOAA) of the United States.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 10
    Publication Date: 2022-05-26
    Description: This report is a summary of an international workshop on the Soviet Maritime Arctic held May 10-13, 1987 by the Marine Policy Center of the Woods Hole Oceanographic Institution. Twenty-eight scholars from Canada, Great Britain, Norway and the United States participated. The workshop provided a forum for Western scholars to examine and discuss Soviet domestic and international policies regarding the Arctic Ocean. Interdisciplinary workshop sessions addressed the following concerns: strategic, geographic, historical, legal, scientific, technological, transportation, geopolitical and resource development. This report includes an overview of the workshop, 15 abstracts of contributed papers (8 with figures or tables), and an edited transcript of the concluding discussion session. Appendices include the final program, a list of participants and a list of discussion questions contributed by the participants prior to the workshop. Several key findings of the workshop include: more than 500 years of Russian involvement in the Arctic Ocean; USSR operation of the world's largest polar fleet primarily for transportation and resource development; Russian nationalism as a possible driving force in Soviet activity in the Arctic; Soviet concerns for the Arctic representing an amalgamation of interests (economic, security, environmental, resource, others), none of which alone is predominant; probable Soviet participation in international Arctic regimes based on past actions; and, Soviet legislative enactments which indicate that the balance of interests embodied in the Law of the Sea Convention are largely acceptable to the Soviet Union and that extreme doctrinal views on the legal status of polar seas do not enjoy support in law or State practice.
    Description: Funding was provided by the John D. and Catherine T. MacArthur Foundation
    Keywords: Congresses and conventions ; Russia, Northern ; Arctic regions
    Repository Name: Woods Hole Open Access Server
    Type: Technical Report
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