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  • 2020-2024  (16)
  • 1975-1979  (2)
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  • 1
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    230Th global thorium database (2020)
    PANGAEA
    Details
    Publication Date: 2024-03-02
    Description: In this dataset we present a global compilation of over 1000 sedimentary records of 230Th from across the global ocean at two time slices, the Late Holocene (0-5000 years ago, or 0-5 ka) and the Last Glacial Maximum (18.5-23.5 ka). Data have been screened for age control, errors, and lithogenic corrections. Overall quality levels were computed by summing each record's scores on the individual criteria. A record is optimal if it is based on a chronology that is constrained by δ18O or 14C and it provides both the raw nuclide concentrations and the associated errors. About one quarter of the records in the database achieved this highest quality level. The large majority of the records in the database are good, passing two of the three criteria, while the remaining quarter are of fair or poor quality.
    Keywords: Comment; DEPTH, water; Distance; Flag; Focusing factor; GEOTRACES; Global marine biogeochemical cycles of trace elements and their isotopes; Identification; LATITUDE; LONGITUDE; Ocean; ORDINAL NUMBER; Quality level; Ratio; Reference/source; Thorium-230 excess, decay-corrected; Total sediment, flux; Uranium/Thorium ratio
    Type: Dataset
    Format: text/tab-separated-values, 15667 data points
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    DATA PANGAEA
  • 2
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    Seawater carbonate chemistry and the decrease of H+ concentration in the phycosphere and thickness of the pH boundary layer of marine diatoms Coscinodiscus wailesii (2022)
    PANGAEA
    Details
    Publication Date: 2024-03-15
    Description: Surface ocean pH is declining due to anthropogenic atmospheric CO2 uptake with a global decline of ~0.3 possible by 2100. Extracellular pH influences a range of biological processes, including nutrient uptake, calcification and silicification. However, there are poor constraints on how pH levels in the extracellular microenvironment surrounding phytoplankton cells (the phycosphere) differ from bulk seawater. This adds uncertainty to biological impacts of environmental change. Furthermore, previous modelling work suggests that phycosphere pH of small cells is close to bulk seawater, and this has not been experimentally verified. Here we observe under 140 μmol photons/m**2/s the phycosphere pH of Chlamydomonas concordia (5 µm diameter), Emiliania huxleyi (5 µm), Coscinodiscus radiatus (50 µm) and C. wailesii (100 µm) are 0.11 ± 0.07, 0.20 ± 0.09, 0.41 ± 0.04 and 0.15 ± 0.20 (mean ± SD) higher than bulk seawater (pH 8.00), respectively. Thickness of the pH boundary layer of C. wailesii increases from 18 ± 4 to 122 ± 17 µm when bulk seawater pH decreases from 8.00 to 7.78. Phycosphere pH is regulated by photosynthesis and extracellular enzymatic transformation of bicarbonate, as well as being influenced by light intensity and seawater pH and buffering capacity. The pH change alters Fe speciation in the phycosphere, and hence Fe availability to phytoplankton is likely better predicted by the phycosphere, rather than bulk seawater. Overall, the precise quantification of chemical conditions in the phycosphere is crucial for assessing the sensitivity of marine phytoplankton to ongoing ocean acidification and Fe limitation in surface oceans.
    Keywords: Acid-base regulation; Alkalinity, total; Aragonite saturation state; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chromista; Coscinodiscus wailesii; Figure; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Hydrogen ion concentration; Laboratory experiment; Laboratory strains; Not applicable; OA-ICC; Ocean Acidification International Coordination Centre; Ochrophyta; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Phytoplankton; Proton gradients; Salinity; Single species; Species, unique identification; Temperature, water; Thickness; Treatment; Type
    Type: Dataset
    Format: text/tab-separated-values, 3286 data points
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    DATA PANGAEA
  • 3
    Electronic Resource
    Electronic Resource
    NMR study of 4-membered rings. VIIIPart VII: C. Cistaro, G. Fronza, R. Mondelli, S. Bradamante and G. A. Pagani, J. Magn. Resonance 17, 219 (1975). - The sign of the four-bond couplings in adducts of cyclopentenone with vic-dichloroethylenes (1975)
    Chichester : Wiley-Blackwell
    Organic Magnetic Resonance 7 (1975), S. 320-325 
    Details
    ISSN: 0030-4921
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The proton spectra of the four stereoisomers prepared by photocycloaddition of 2-cyclopentenone to cis and trans dichloroethylene have been analysed using tickling and INDOR techniques in order to obtain the sign of the cross-ring four-bond coupling constants in the cyclobutane ring. These parameters are correlated with the relative orientation of the protons involved. The complete NMR analysis of the seven-spin system of the cycloadduct endo-7-phenoxybicyclo[3.2.0]hept-2-en-6-one has been carried out and all the four-bond coupling constants have been obtained and discussed. The sign of the cross-ring coupling in the cyclobutanone ring has been determined.
    Additional Material: 3 Ill.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1002/mrc.1270070706
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    Paper (German National Licenses)
    Fulltext
  • 4
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    Cytolytic activity of circulating human monocytes on transformed and untransformed human fibroblasts (1979)
    Wiley
    Details
    Publication Date: 1979-01-15
    Print ISSN: 0020-7136
    Electronic ISSN: 1097-0215
    Topics: Biology , Medicine
    Published by Wiley
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    PAPER CURRENT
  • 5
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    Minimal cobalt metabolism in the marine cyanobacterium Prochlorococcus (2020)
    National Academy of Sciences (Washington, DC)
    Details
    Publication Date: 2023-02-08
    Description: Despite very low concentrations of cobalt in marine waters, cyanobacteria in the genus Prochlorococcus retain the genetic machinery for the synthesis and use of cobalt-bearing cofactors (cobalamins) in their genomes. We explore cobalt metabolism in a Prochlorococcus isolate from the equatorial Pacific Ocean (strain MIT9215) through a series of growth experiments under iron- and cobalt-limiting conditions. Metal uptake rates, quantitative proteomic measurements of cobalamin-dependent enzymes, and theoretical calculations all indicate that Prochlorococcus MIT9215 can sustain growth with less than 50 cobalt atoms per cell, ∼100-fold lower than minimum iron requirements for these cells (∼5,100 atoms per cell). Quantitative descriptions of Prochlorococcus cobalt limitation are used to interpret the cobalt distribution in the equatorial Pacific Ocean, where surface concentrations are among the lowest measured globally but Prochlorococcus biomass is high. A low minimum cobalt quota ensures that other nutrients, notably iron, will be exhausted before cobalt can be fully depleted, helping to explain the persistence of cobalt-dependent metabolism in marine cyanobacteria.
    Type: Article , PeerReviewed
    Format: text
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    PAPER (OCEANREP)
  • 6
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    Heme b distributions through the Atlantic Ocean: evidence for “anemic” phytoplankton populations (2020)
    Nature Research
    Details
    Publication Date: 2023-02-08
    Description: Heme b is an iron-containing cofactor in hemoproteins that participates in the fundamental processes of photosynthesis and respiration in phytoplankton. Heme b concentrations typically decline in waters with low iron concentrations but due to lack of field data, the distribution of heme b in particulate material in the ocean is poorly constrained. Here we report particulate heme b distributions across the Atlantic Ocean (59.9°N to 34.6°S). Heme b concentrations in surface waters ranged from 0.10 to 33.7 pmol L−1 (median = 1.47 pmol L−1, n = 974) and were highest in regions with a high biomass. The ratio of heme b to particulate organic carbon (POC) exhibited a mean value of 0.44 μmol heme b mol−1 POC. We identified the ratio of 0.10 µmol heme b mol−1 POC as the cut-off between heme b replete and heme b deficient (anemic) phytoplankton. By this definition, we observed anemic phytoplankton populations in the Subtropical South Atlantic and Irminger Basin. Comparison of observed and modelled heme b suggested that heme b could account for between 0.17–9.1% of biogenic iron. Our large scale observations of heme b relative to organic matter provide further evidence of the impact of changes in iron supply on phytoplankton iron status across the Atlantic Ocean.
    Type: Article , PeerReviewed
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    PAPER (OCEANREP)
  • 7
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    Resource Availability and Entrainment Are Driven by Offsets Between Nutriclines and Winter Mixed‐Layer Depth (2020)
    AGU (American Geophysical Union) | Wiley
    Details
    Publication Date: 2023-02-08
    Description: While phytoplankton play a key role in ocean biogeochemical cycles, the availability and supply pathways of resources that support their growth remain poorly constrained. Here, we show that the availability of various resources varies over several orders of magnitude throughout the Atlantic Ocean, causing regional contrasts in resource deficiency. Regional variations in the relative availability of nitrogen, phosphorous, silicon, iron, zinc, manganese, cobalt, and cadmium are important and result from the contrasts between winter mixing depths and differences in vertical profiles of the different resources. The winter-time thickening of the mixed layer may replenish or deplete resources via entrainment, depending on the vertical nutrient profile. For nutrients like nitrate, phosphate, and cadmium, entrainment is a consistent source term. While for others, such as manganese and iron, entrainment can reduce ocean resource availability, particularly in subtropical regions. Any future change to the depth of winter-time mixing will cause region-specific changes in relative availability of different resources that may have important ecological consequences.
    Type: Article , PeerReviewed
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    PAPER (OCEANREP)
  • 8
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    Cellular costs underpin micronutrient limitation in phytoplankton (2021)
    AAAS (American Association for the Advancement of Science)
    Details
    Publication Date: 2024-02-07
    Description: Micronutrients control phytoplankton growth in the ocean, influencing carbon export and fisheries. It is currently unclear how micronutrient scarcity affects cellular processes and how interdependence across micronutrients arises. We show that proximate causes of micronutrient growth limitation and interdependence are governed by cumulative cellular costs of acquiring and using micronutrients. Using a mechanistic proteomic allocation model of a polar diatom focused on iron and manganese, we demonstrate how cellular processes fundamentally underpin micronutrient limitation, and how they interact and compensate for each other to shape cellular elemental stoichiometry and resource interdependence. We coupled our model with metaproteomic and environmental data, yielding an approach for estimating biogeochemical metrics, including taxon-specific growth rates. Our results show that cumulative cellular costs govern how environmental conditions modify phytoplankton growth.
    Type: Article , PeerReviewed
    Format: text
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    PAPER (OCEANREP)
  • 9
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    The role of zinc in the adaptive evolution of polar phytoplankton (2022)
    Nature Research
    Details
    Publication Date: 2024-02-07
    Description: Zinc is an essential trace metal for oceanic primary producers with the highest concentrations in polar oceans. However, its role in the biological functioning and adaptive evolution of polar phytoplankton remains enigmatic. Here, we have applied a combination of evolutionary genomics, quantitative proteomics, co-expression analyses and cellular physiology to suggest that model polar phytoplankton species have a higher demand for zinc because of elevated cellular levels of zinc-binding proteins. We propose that adaptive expansion of regulatory zinc-finger protein families, co-expanded and co-expressed zinc-binding proteins families involved in photosynthesis and growth in these microalgal species and their natural communities were identified to be responsible for the higher zinc demand. The expression of their encoding genes in eukaryotic phytoplankton metatranscriptomes from pole-to-pole was identified to correlate not only with dissolved zinc concentrations in the upper ocean but also with temperature, suggesting that environmental conditions of polar oceans are responsible for an increased demand of zinc. These results suggest that zinc plays an important role in supporting photosynthetic growth in eukaryotic polar phytoplankton and that this has been critical for algal colonization of low-temperature polar oceans.
    Type: Article , PeerReviewed
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  • 10
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    Phycosphere pH of unicellular nano- and micro- phytoplankton cells and consequences for iron speciation (2022)
    Nature Research
    Details
    Publication Date: 2024-02-07
    Description: Surface ocean pH is declining due to anthropogenic atmospheric CO2 uptake with a global decline of ~0.3 possible by 2100. Extracellular pH influences a range of biological processes, including nutrient uptake, calcification and silicification. However, there are poor constraints on how pH levels in the extracellular microenvironment surrounding phytoplankton cells (the phycosphere) differ from bulk seawater. This adds uncertainty to biological impacts of environmental change. Furthermore, previous modelling work suggests that phycosphere pH of small cells is close to bulk seawater, and this has not been experimentally verified. Here we observe under 140 μmol photons·m−2·s−1 the phycosphere pH of Chlamydomonas concordia (5 µm diameter), Emiliania huxleyi (5 µm), Coscinodiscus radiatus (50 µm) and C. wailesii (100 µm) are 0.11 ± 0.07, 0.20 ± 0.09, 0.41 ± 0.04 and 0.15 ± 0.20 (mean ± SD) higher than bulk seawater (pH 8.00), respectively. Thickness of the pH boundary layer of C. wailesii increases from 18 ± 4 to 122 ± 17 µm when bulk seawater pH decreases from 8.00 to 7.78. Phycosphere pH is regulated by photosynthesis and extracellular enzymatic transformation of bicarbonate, as well as being influenced by light intensity and seawater pH and buffering capacity. The pH change alters Fe speciation in the phycosphere, and hence Fe availability to phytoplankton is likely better predicted by the phycosphere, rather than bulk seawater. Overall, the precise quantification of chemical conditions in the phycosphere is crucial for assessing the sensitivity of marine phytoplankton to ongoing ocean acidification and Fe limitation in surface oceans.
    Type: Article , PeerReviewed
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