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  • 1
    Publication Date: 2014-05-03
    Description: Analysis of a high-resolution suite of modern glacial sediments from Jostedalen, southern Norway, using a portable optically stimulated luminescence (OSL) reader, provides insights into the processes of sediment bleaching in glacial environments at the catchment scale. High-magnitude, low-frequency processes result in the least effective sediment bleaching, whereas low-magnitude, high-frequency events provide greater bleaching opportunities. Changes in sediment bleaching can also be identified at the scale of individual bar features: tails of braid-bars and side-attached bar deposits have the lowest portable reader signal intensities, as well as the smallest conventional OSL residual doses. In addition to improving our understanding of the processes of sediment bleaching, portable reader investigations can also facilitate more rapid and comprehensive modern analogue investigations, which are commonly used to confirm that the OSL signals of modern glacial sediments are well bleached.
    Print ISSN: 0300-9483
    Electronic ISSN: 1502-3885
    Topics: Geography , Geosciences
    Published by Wiley
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  • 2
    Publication Date: 2014-03-27
    Description: Contact patterns among hosts are considered as one of the most critical factors contributing to unequal pathogen transmission. Consequently, networks have been widely applied in infectious disease modeling. However most studies assume static network structure due to lack of accurate observation and appropriate analytic tools. In this study we used high temporal and spatial resolution animal position data to construct a high-resolution contact network relevant to infectious disease transmission. The animal contact network aggregated at hourly level was highly variable and dynamic within and between days, for both network structure (network degree distribution) and individual rank of degree distribution in the network (degree order). We integrated network degree distribution and degree order heterogeneities with a commonly used contact-based, directly transmitted disease model to quantify the effect of these two sources of heterogeneity on the infectious disease dynamics. Four conditions were simulated based on the combination of these two heterogeneities. Simulation results indicated that disease dynamics and individual contribution to new infections varied substantially among these four conditions under both parameter settings. Changes in the contact network had a greater effect on disease dynamics for pathogens with smaller basic reproduction number (i.e. R0 〈 2). Scientific Reports 4 doi: 10.1038/srep04472
    Electronic ISSN: 2045-2322
    Topics: Natural Sciences in General
    Published by Springer Nature
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  • 3
    Publication Date: 2014-09-27
    Description: A normal-fault network from Milne Point, Alaska, is investigated focusing on characterizing geometry, displacement, strain, and different fault interactions. The network, constrained from three-dimensional seismic reflection data, comprises two generations of faults: Cenozoic north-northeast–trending faults and Jurassic west-northwest–trending faults, which highly compartmentalize Upper Triassic to Lower Cretaceous reservoirs. The west-northwest–trending faults are influenced by a similarly oriented underlying structural grain. This influence is characterized by increases in throw on several faults, strain localization, reorientation of faults and an increase in linkage maturity. Reconstructing fault plane geometries and mapping spatial variations in throw identified key characteristic features in their interactions and reactivation of pre-existing structures. Faults are divided into isolated, abutting, and splaying faults. Isolated faults exhibit a range of displacement profiles depending on the degree of restriction at fault tips. Fault splays accommodate step-like decreases in throw along larger main faults with a throw maximum at the intersection with the main fault. Throw profiles of abutting faults are divided into two groups: early stage abutting faults with throw minima at both the isolated and abutting tips, and developed abutting faults with throw maxima near the abutting tip. Developed abutting faults accumulate throw after initial abutment, locally reactivating and transferring throw onto the pre-existing fault. Two abutting faults can link kinematically by reactivating a segment of the pre-existing fault forming a trailing fault. The motion sense of the trailing fault can be synthetic or antithetic to the reactivated pre-existing fault, producing increases or decreases in the throw of the pre-existing fault, respectively.
    Print ISSN: 0149-1423
    Electronic ISSN: 0149-1423
    Topics: Geosciences
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  • 4
    Publication Date: 2010-10-22
    Description: Aneuploidy, referring here to genome contents characterized by abnormal numbers of chromosomes, has been associated with developmental defects, cancer and adaptive evolution in experimental organisms. However, it remains unresolved how aneuploidy impacts gene expression and whether aneuploidy could directly bring about phenotypic variation and improved fitness over that of euploid counterparts. Here we show, using quantitative mass spectrometry-based proteomics and phenotypic profiling, that levels of protein expression in aneuploid yeast strains largely scale with chromosome copy numbers, following the same trend as that observed for the transcriptome, and that aneuploidy confers diverse phenotypes. We designed a novel scheme to generate, through random meiotic segregation, 38 stable and fully isogenic aneuploid yeast strains with distinct karyotypes and genome contents between 1N and 3N without involving any genetic selection. Through quantitative growth assays under various conditions or in the presence of a panel of chemotherapeutic or antifungal drugs, we found that some aneuploid strains grew significantly better than euploid control strains under conditions suboptimal for the latter. These results provide strong evidence that aneuploidy directly affects gene expression at both the transcriptome and proteome levels and can generate significant phenotypic variation that could bring about fitness gains under diverse conditions. Our findings suggest that the fitness ranking between euploid and aneuploid cells is dependent on context and karyotype, providing the basis for the notion that aneuploidy can directly underlie phenotypic evolution and cellular adaptation.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2978756/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2978756/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pavelka, Norman -- Rancati, Giulia -- Zhu, Jin -- Bradford, William D -- Saraf, Anita -- Florens, Laurence -- Sanderson, Brian W -- Hattem, Gaye L -- Li, Rong -- R01 GM059964/GM/NIGMS NIH HHS/ -- R01 GM059964-12/GM/NIGMS NIH HHS/ -- R01GM059964/GM/NIGMS NIH HHS/ -- England -- Nature. 2010 Nov 11;468(7321):321-5. doi: 10.1038/nature09529. Epub 2010 Oct 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Stowers Institute for Medical Research, 1000 East 50th Street, Kansas City, Missouri 64110, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20962780" target="_blank"〉PubMed〈/a〉
    Keywords: *Aneuploidy ; Antifungal Agents/pharmacology ; Cell Division/drug effects ; Chromosomes, Fungal/drug effects/genetics ; Gene Expression Profiling ; Gene Expression Regulation, Fungal/drug effects ; Genetic Fitness/drug effects/genetics ; Karyotyping ; Meiosis/drug effects/genetics ; *Phenotype ; Polyploidy ; Proteome/drug effects/*genetics ; Proteomics ; Saccharomyces cerevisiae/cytology/drug effects/*genetics/*metabolism ; Stress, Physiological ; Transcription, Genetic/drug effects/genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2008-01-22
    Description: The future paths of population ageing result from specific combinations of declining fertility and increasing life expectancies in different parts of the world. Here we measure the speed of population ageing by using conventional measures and new ones that take changes in longevity into account for the world as a whole and for 13 major regions. We report on future levels of indicators of ageing and the speed at which they change. We show how these depend on whether changes in life expectancy are taken into account. We also show that the speed of ageing is likely to increase over the coming decades and to decelerate in most regions by mid-century. All our measures indicate a continuous ageing of the world's population throughout the century. The median age of the world's population increases from 26.6 years in 2000 to 37.3 years in 2050 and then to 45.6 years in 2100, when it is not adjusted for longevity increase. When increases in life expectancy are taken into account, the adjusted median age rises from 26.6 in 2000 to 31.1 in 2050 and only to 32.9 in 2100, slightly less than what it was in the China region in 2005. There are large differences in the regional patterns of ageing. In North America, the median age adjusted for life expectancy change falls throughout almost the entire century, whereas the conventional median age increases significantly. Our assessment of trends in ageing is based on new probabilistic population forecasts. The probability that growth in the world's population will end during this century is 88%, somewhat higher than previously assessed. After mid-century, lower rates of population growth are likely to coincide with slower rates of ageing.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lutz, Wolfgang -- Sanderson, Warren -- Scherbov, Sergei -- England -- Nature. 2008 Feb 7;451(7179):716-9. doi: 10.1038/nature06516. Epub 2008 Jan 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉World Population Program, International Institute for Applied Systems Analysis, Schlossplatz 1, A-2361 Laxenburg, Austria. lutz@iiasa.ac.at〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18204438" target="_blank"〉PubMed〈/a〉
    Keywords: Age Distribution ; Aged ; Aged, 80 and over ; Aging/physiology ; Emigration and Immigration ; *Geography ; Humans ; *Internationality ; Life Expectancy/ethnology/*trends ; Longevity ; Middle Aged ; Mortality/trends ; Population Density ; Time Factors
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 6
    Publication Date: 2008-02-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lutz, Wolfgang -- Cuaresma, Jesus Crespo -- Sanderson, Warren -- New York, N.Y. -- Science. 2008 Feb 22;319(5866):1047-8. doi: 10.1126/science.1151753.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Vienna Institute of Demography (Austrian Academy of Sciences), A-1040 Vienna, Austria. lutz@iiasa.ac.at〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18292326" target="_blank"〉PubMed〈/a〉
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2014-11-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lutz, Wolfgang -- Butz, William -- K C, Samir -- Sanderson, Warren -- Scherbov, Sergei -- New York, N.Y. -- Science. 2014 Oct 31;346(6209):561. doi: 10.1126/science.346.6209.561-a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉World Population Program, International Institute for Applied Systems Analysis (IIASA), A-2361 Laxenburg, Austria. lutz@iiasa.ac.at. ; World Population Program, International Institute for Applied Systems Analysis (IIASA), A-2361 Laxenburg, Austria.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25359958" target="_blank"〉PubMed〈/a〉
    Keywords: Humans ; *Population Growth
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 8
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1980-12-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sanderson, W -- Johnston, B F -- New York, N.Y. -- Science. 1980 Dec 19;210(4476):1302-3.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17817824" target="_blank"〉PubMed〈/a〉
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2013-11-02
    Description: Contact structure, a critical driver of infectious disease transmission, is not completely understood and characterized for environmentally transmitted pathogens. In this study, we assessed the effects of temporal and spatial heterogeneity in animal contact structures on the dynamics of environmentally transmitted pathogens. We used real-time animal position data to describe contact between animals and specific environmental areas used for feeding and watering calves. The generated contact structure varied across days and among animals. We integrated animal and environmental heterogeneity into an agent-based simulation model for Escherichia coli O157 environmental transmission in cattle to simulate four different scenarios with different environmental bacteria concentrations at different areas. The simulation results suggest heterogeneity in environmental contact structure among cattle influences pathogen prevalence and exposure associated with each environment. Our findings suggest that interventions that target environmental areas, even relatively small areas, with high bacterial concentration can result in effective mitigation of environmentally transmitted pathogens. Scientific Reports 3 doi: 10.1038/srep03112
    Electronic ISSN: 2045-2322
    Topics: Natural Sciences in General
    Published by Springer Nature
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  • 10
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Journal of the American Chemical Society 88 (1966), S. 4185-4190 
    ISSN: 1520-5126
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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