ALBERT

Description: Global climate change has a significant effect on extreme environments and a profound influence on species survival. However, little is known of the genome-wide pattern of livestock adaptations to extreme environments over a short time frame following domestication. Sheep ( Ovis aries ) have become well adapted to a diverse range of agroecological zones, including certain extreme environments (e.g., plateaus and deserts), during their post-domestication (approximately 8–9 kya) migration and differentiation. Here, we generated whole-genome sequences from 77 native sheep, with an average effective sequencing depth of ~5 x for 75 samples and ~42 x for 2 samples. Comparative genomic analyses among sheep in contrasting environments, that is, plateau (〉4,000 m above sea level) versus lowland (〈100 m), high-altitude region (〉1500 m) versus low-altitude region (〈1300 m), desert (〈10 mm average annual precipitation) versus highly humid region (〉600 mm), and arid zone (〈400 mm) versus humid zone (〉400 mm), detected a novel set of candidate genes as well as pathways and GO categories that are putatively associated with hypoxia responses at high altitudes and water reabsorption in arid environments. In addition, candidate genes and GO terms functionally related to energy metabolism and body size variations were identified. This study offers novel insights into rapid genomic adaptations to extreme environments in sheep and other animals, and provides a valuable resource for future research on livestock breeding in response to climate change.

Description: More size-resolved chemical information is needed before the physicochemical characteristics and sources of airborne particles can be understood, but this information remains unavailable in most regions of China due to a paucity of measurement data. In this study, we report a one-year observation of various chemical species in size-segregated particle samples collected in urban Beijing, a mega city that experiences severe haze episodes. In addition to fine particles, the measured particle size distributions showed high concentrations of coarse particles during the haze periods. The abundance and chemical compositions of the particles in this study were temporally and spatially variable, with major contributions from organic matter and secondary inorganic aerosols. The contribution of the organic matter to the mass decreased from 37.9 to 33.1%, whereas the total contribution of SO42−, NO3− and NH4+ increased from 19.1 to 32.3% on non-haze and haze days, respectively. Due to heterogeneous reactions and hygroscopic growth, the peaks in the size distributions of organic carbon, SO42−, NO3−, NH4+, Cl−, K+ and Cu shifted from 0.43–0.65 μm on non-haze days to 0.65–1.1 μm on haze days. Although the size distributions are similar for the heavy metals Pb, Cd and Tl during the observation period, their concentrations increased by a factor of more than 1.5 on haze days compared with non-haze days. We found that NH4+ with a size range of 0.43–0.65 μm, SO42− and NO3− with a size range of 0.65–1.1 μm and Ca2+ with a size range of 5.8–9 μm as well as the meteorological factors of relative humidity and wind speed were responsible for the haze pollution when the visibility was less than 15 km. Source apportionment using positive matrix factorization identified six common sources: secondary inorganic aerosols (26.1% for fine particles vs. 9.5% for coarse particles), coal combustion (19 vs. 23.6%), primary emissions from vehicles (5.9 vs. 8.0%), biomass burning (8.5 vs. 2.9%), industrial pollution (6.3 vs. 8.5%) and mineral dust (16.1 vs. 35.1%). The first four factors were higher on haze days, while the latter factors were higher on non-haze days. The sources generally increased with decreasing size with the exception of mineral dust. However, two peaks were consistently found in the fine and coarse particles. The contributing sources also varied with the wind direction; coal and oil combustion products increased during southern flows, indicating that any mitigation strategy should consider the wind pattern, especially during the haze periods. The findings indicated that the PM2.5-based dataset is insufficient for the Chinese source control policy, and detailed size-resolved information is urgently needed to characterize the important sources in urban regions and better understand severe haze pollution.

Description: Additional size-resolved chemical information is needed before the physicochemical characteristics and sources of airborne particles can be understood; however, this information remains unavailable in most regions of China due to lacking measurement data. In this study, we report observations of various chemical species in size-segregated particle samples that were collected over 1 year in the urban area of Beijing, a megacity that experiences severe haze episodes. In addition to fine particles, high concentrations of coarse particles were measured during the periods of haze. The abundance and chemical compositions of the particles in this study were temporally and spatially variable, with major contributions from organic matter and secondary inorganic aerosols. The contributions of organic matter to the particle mass decreased from 37.9 to 31.2 %, and the total contribution of sulfate, nitrate and ammonium increased from 19.1 to 33.9 % between non-haze and haze days, respectively. Due to heterogeneous reactions and hygroscopic growth, the peak concentrations of the organic carbon, cadmium and sulfate, nitrate, ammonium, chloride and potassium shifted from 0.43 to 0.65 µm on non-haze days to 0.65–1.1 µm on haze days. Although the size distributions of lead and thallium were similar during the observation period, their concentrations increased by a factor of more than 1.5 on haze days compared with non-haze days. We observed that sulfate and ammonium, which have a size range of 0.43–0.65 µm, sulfate and nitrate, which have a size range of 0.65–1.1 µm, calcium, which has a size range of 5.8–9 µm, and the meteorological factors of relative humidity and wind speed were responsible for haze pollution when the visibility was less than 10 km. Source apportionment using Positive Matrix Factorization showed six PM2.1 sources and seven PM2.1–9 common sources: secondary inorganic aerosol (25.1 % for fine particles vs. 9.8 % for coarse particles), coal combustion (17.7 % vs. 7.8 %), biomass burning (11.1 % vs. 11.8 %), industrial pollution (12.1 % vs. 5.1 %), road dust (8.4 % vs. 10.9 %), vehicle emissions (19.6 % for fine particles), mineral dust (22.6 % for coarse particles) and organic aerosol (23.6 % for coarse particles). The contributions of the first four factors and vehicle emissions were higher on haze days than non-haze days, while the reverse is true for road dust and mineral dust. The sources' contribution generally increased as the size decreased, with the exception of mineral dust. However, two peaks were consistently found in the fine and coarse particles. In addition, the sources' contribution varied with the wind direction, with coal and oil combustion products increasing during southern flows. This result suggests that future air pollution control strategies should consider wind patterns, especially during episodes of haze. Furthermore, the findings of this study indicated that the PM2.5-based data set is insufficient for determining source control policies for haze in China and that detailed size-resolved information is needed to characterize the important sources of particulate matter in urban regions and better understand severe haze pollution.