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  • 1
    ISSN: 1573-5109
    Keywords: germplasm ; morphology ; numerical taxonomy ; Pakistan ; radish ; Raphanus sativus ; RAPDs
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Genetic diversity of 30 radish (Raphanus sativus L.) accessions was investigated at the phenotypic level with morphological characters and at the DNA level using the random amplified polymorphic DNA (RAPD) technique. Thirty-six morpho-physiological traits were recorded from seedling stage to harvest. The 31 primers used generated 202 RAPD bands, of which 158 (78.2%) were polymorphic. Multivariate procedures were used to classify the germplasm on the basis of phenotypic traits and RAPD fragments. Dendrograms were generated for the Euclidean distance from the morphological data and the Nei's genetic distance from the RAPD markers. Phenotypically, all the accessions were classified into four major groups corresponding to the different forms of cultivated radish. The morphological diversity existing within each of these groups suggested that they should be discriminated into the three botanical convarieties, sativusT (large-rooted), caudatus (pod-type) and oleifer (oilseed-type). Clustering of the accessions did not show any pattern of association between the morphological characters and the collection sites. Instead, landrace groups were associated with their morphological similarities and horticultural uses. On the other hand, the intra-specific genetic relationships of several accessions based on RAPD analysis were related primarily to their collection sites rather than to their phenotypic affinities. The level of polymorphism exhibited by the various convarieties could be exploited in genetic mapping populations to tag economically important traits. These genotypes also could serve as a useful germplasm source for root, leaf, pod and seed. This preliminary study of traditional radish landraces from Pakistan provides useful information regarding their horticultural potential.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1573-5060
    Keywords: Brassica juncea ; germplasm ; morphology ; numerical taxonomy ; Pakistan
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract An investigation was conducted to determine the extent of diversity and relationships among the Brassica juncea germplasm from Pakistan using morphological characters. A total of 52 accessions, including the collected germplasm as well as commercial cultivars/improved lines, were studied under field conditions at Tsukuba, Japan during 1995 and 1996. All the accessions were characterized for 35 agro-morphological characters from seedling emergence to crop maturity. Morphological data were analyzed by numerical taxonomic techniques using two complementary procedures: cluster and principal component analyses. Phenograms based on Euclidean distance placed the accessions into six groups during both years. Landrace groups were primarily associated with morphological differences among the accessions and secondarily with the breeding objectives and horticultural uses. The mustard germplasm collected from Pakistan showed a comparatively low level of phenotypic variation amongst themselves and were genetically similar to the oilseed cultivars. However, the oilseed forms and vegetable cultivars were genetically distinct. This study revealed that the evaluated germplasm appears to have a narrow genetic base which undergoes a high level of genetic erosion. This is perhaps due to the use of the same ancestors in the selection of new lines for similar horticultural traits, replacement by major crops and changes in agricultural land uses.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1573-5060
    Keywords: Brassica juncea ; diversity ; germplasm ; Pakistan ; relationships ; RAPDs
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The genetic diversity and the relationships among a collection of mustard (B. juncea) germplasm, including 41 accessions collected from Pakistan, 6 oilseed cultivars/ lines and 5 Japanese vegetable cultivars, were evaluated using random amplified polymorphic DNA (RAPD) markers. A total of 198 polymorphic amplified products were obtained from 30 decamer primers. Of these, 14 were unique to the accession PAK-85835 and 37 were specific to PAK-85839. Based on pair-wise comparisons of RAPD amplification products, genetic similarity was estimated using similarity coefficients of Nei & Li (1979) and a dendrogram was constructed using the unweighted pair-group method with arithmetic averages (UPGMA). Cluster analysis based on these genetic similarities placed most of the collected germplasm and oilseed cultivars/lines close to each other, showing a low level of polymorphism between the oilseed accessions collected in Pakistan. However, the clusters formed by the oilseed collections and cultivars were distinct from those formed by the vegetable cultivars. A low level of genetic variability of oilseed mustard in Pakistan was attributed to the selection for similar traits and horticultural uses. The farmers' preference for more remunerative crops and perhaps the close parentage of these accessions further contributed towards their little diversity. The study demonstrated that the RAPD is a simple and fast technique to compare the genetic relationships and the patterns of variation among accessions of this crop.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1573-9368
    Keywords: gene trapping ; ES cells ; 3′ RACE ; mutant mice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract “Gene trapping” in embryonic stem (ES) cells is a novel approach to identify a series of genes in mammals concomitant with the production of the corresponding mutant mice. However, this approach is currently unable to identify genes that are not expressed in ES cells. Here we describe a strategy to identify gene trapping clones which is not based on expression of a reporter gene. It uses theneo r gene which lacks a polyadenylation signal and has a splice donor signal. Expression of theneo r gene as fusion transcripts with the 3′ end containing the polyadenylation signal of tagged genes allows the identification of these clones by 3′ rapid amplification of the cDNA end in undifferentiated ES cells, even if the genes are not expressed in ES cells. Amplification was observed in about 25% of G418-resistant clones. Sequence analyses suggested the amplifications represent gene trapping events. The feasibility of this approach was further assessed by analysing one clone, PAT-12, in detail.
    Type of Medium: Electronic Resource
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  • 5
    Publication Date: 1995-07-01
    Print ISSN: 0962-8819
    Electronic ISSN: 1573-9368
    Topics: Biology
    Published by Springer
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