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  • 1
    Publication Date: 2014-08-20
    Description: Gene expression varies widely in natural populations, yet the proximate and ultimate causes of this variation are poorly known. Understanding how variation in gene expression affects abiotic stress tolerance, fitness, and adaptation is central to the field of evolutionary genetics. We tested the hypothesis that genes with natural genetic variation in their expression responses to abiotic stress are likely to be involved in local adaptation to climate in Arabidopsis thaliana . Specifically, we compared genes with consistent expression responses to environmental stress (expression stress responsive, "eSR") to genes with genetically variable responses to abiotic stress (expression genotype-by-environment interaction, "eGEI"). We found that on average genes that exhibited eGEI in response to drought or cold had greater polymorphism in promoter regions and stronger associations with climate than those of eSR genes or genomic controls. We also found that transcription factor binding sites known to respond to environmental stressors, especially abscisic acid responsive elements, showed significantly higher polymorphism in drought eGEI genes in comparison to eSR genes. By contrast, eSR genes tended to exhibit relatively greater pairwise haplotype sharing, lower promoter diversity, and fewer nonsynonymous polymorphisms, suggesting purifying selection or selective sweeps. Our results indicate that cis -regulatory evolution and genetic variation in stress responsive gene expression may be important mechanisms of local adaptation to climatic selective gradients.
    Print ISSN: 0737-4038
    Electronic ISSN: 1537-1719
    Topics: Biology
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  • 2
    Publication Date: 2008-07-18
    Description: Aggregate community-level response to disturbance is a principle concern in ecology because post-disturbance dynamics are integral to the ability of ecosystems to maintain function in an uncertain world. Community-level responses to disturbance can be arrayed along a spectrum ranging from synchronous oscillations where all species rise and fall together, to compensatory dynamics where total biomass remains relatively constant despite fluctuations in the densities of individual species. An important recent insight is that patterns of synchrony and compensation can vary with the timescale of analysis and that spectral time series methods can enable detection of coherent dynamics that would otherwise be obscured by opposing patterns occurring at different scales. Here I show that application of wavelet analysis to experimentally manipulated plankton communities reveals strong synchrony after disturbance. The result is paradoxical because it is well established that these communities contain both disturbance-sensitive and disturbance-tolerant species leading to compensation within functional groups. Theory predicts that compensatory substitution of functionally equivalent species should stabilize ecological communities, yet I found at the whole-community level a large increase in seasonal biomass variation. Resolution of the paradox hinges on patterns of seasonality among species. The compensatory shift in community composition after disturbance resulted in a loss of cold-season dominants, which before disturbance had served to stabilize biomass throughout the year. Species dominating the disturbed community peaked coherently during the warm season, explaining the observed synchrony and increase in seasonal biomass variation. These results suggest that theory relating compensatory dynamics to ecological stability needs to consider not only complementarity in species responses to environmental change, but also seasonal complementarity among disturbance-tolerant and disturbance-sensitive species.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Keitt, Timothy H -- England -- Nature. 2008 Jul 17;454(7202):331-4. doi: 10.1038/nature06935.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Integrative Biology, University of Texas, Austin, Texas 78712, USA. tkeitt@mail.utexas.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18633416" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomass ; Crustacea/physiology ; *Ecosystem ; Fresh Water ; Hot Temperature ; Hydrogen-Ion Concentration ; Plankton/*physiology ; Population Dynamics ; Seasons ; Time Factors
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2011-05-26
    Description: Fire regimes in the lowland Neotropics are affected both by anthropogenic land use practices and natural climate variability. In Central America it is widely recognized that fire has been used as an agricultural tool for thousands of years, but the role of anthropogenic ignition as a determinant of past biomass burning frequency and magnitude has been debated. Little is known about the effects of short-term climate variability on fire regimes in this region of the world because of both the low temporal resolution of the available charcoal records and the obfuscating effects of anthropogenic burning throughout the late Holocene. Here we reconstruct 1400 years of fire history and environmental change on Ometepe Island, Lake Nicaragua, and perform statistical wavelet analysis on multiple proxy records to identify natural cycles of environmental variability possibly related to climate forcing. Our results indicate that extensive indigenous burning and landscape modification largely mask any climate signal in the paleo-fire record from AD 580 to 1400, with the exception of the period AD 775—1000 where high wavelet power exists at scales of 2—24 years. This time period coincides with a severe, two-century long regional drought that has been identified at other locations in Central America. High wavelet power at climate-relevant scales after ~AD 1400 in the Ometepe fire record suggests that periodic drought possibly caused by the El Niño Southern Oscillation and/or high-frequency solar cycles may have played a significant role in influencing the post-contact fire regime — a role that is largely concealed in the pre-European strata because of the overriding effects of anthropogenic burning.
    Print ISSN: 0959-6836
    Electronic ISSN: 1477-0911
    Topics: Geography , Geosciences
    Published by Sage
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