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  • 1
    Publication Date: 2020-12-02
    Description: We present a new surface-atmospheric dataset for driving ocean–sea-ice models based on Japanese 55-year atmospheric reanalysis (JRA-55), referred to here as JRA55-do. The JRA55-do dataset aims to replace the CORE interannual forcing version 2 (hereafter called the CORE dataset), which is currently used in the framework of the Coordinated Ocean-ice Reference Experiments (COREs) and the Ocean Model Intercomparison Project (OMIP). A major improvement in JRA55-do is the refined horizontal grid spacing (∼ 55 km) and temporal interval (3 hr). The data production method for JRA55-do essentially follows that of the CORE dataset, whereby the surface fields from an atmospheric reanalysis are adjusted relative to reference datasets. To improve the adjustment method, we use high-quality products derived from satellites and from several other atmospheric reanalysis projects, as well as feedback on the CORE dataset from the ocean modelling community. Notably, the surface air temperature and specific humidity are adjusted using multi-reanalysis ensemble means. In JRA55-do, the downwelling radiative fluxes and precipitation, which are affected by an ambiguous cloud parameterisation employed in the atmospheric model used for the reanalysis, are based on the reanalysis products. This approach represents a notable change from the CORE dataset, which imported independent observational products. Consequently, the JRA55-do dataset is more self-contained than the CORE dataset, and thus can be continually updated in near real-time. The JRA55-do dataset extends from 1958 to the present, with updates expected at least annually. This paper details the adjustments to the original JRA-55 fields, the scientific rationale for these adjustments, and the evaluation of JRA55-do. The adjustments successfully corrected the biases in the original JRA-55 fields. The globally averaged features are similar between the JRA55-do and CORE datasets, implying that JRA55-do can suitably replace the CORE dataset for use in driving global ocean–sea-ice models.
    Description: Published
    Description: 79-139
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 2
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 3
    Publication Date: 2020-10-19
    Description: We present a new framework for global ocean–sea-ice model simulations based on phase 2 of the Ocean Model Intercomparison Project (OMIP-2), making use of the surface dataset based on the Japanese 55-year atmospheric reanalysis for driving ocean–sea-ice models (JRA55-do). We motivate the use of OMIP-2 over the framework for the first phase of OMIP (OMIP-1), previously referred to as the Coordinated Ocean–ice Reference Experiments (COREs), via the evaluation of OMIP-1 and OMIP-2 simulations from 11 state-of-the-science global ocean–sea-ice models. In the present evaluation, multi-model ensemble means and spreads are calculated separately for the OMIP-1 and OMIP-2 simulations and overall performance is assessed considering metrics commonly used by ocean modelers. Both OMIP-1 and OMIP-2 multi-model ensemble ranges capture observations in more than 80 % of the time and region for most metrics, with the multi-model ensemble spread greatly exceeding the difference between the means of the two datasets. Many features, including some climatologically relevant ocean circulation indices, are very similar between OMIP-1 and OMIP-2 simulations, and yet we could also identify key qualitative improvements in transitioning from OMIP-1 to OMIP-2. For example, the sea surface temperatures of the OMIP-2 simulations reproduce the observed global warming during the 1980s and 1990s, as well as the warming slowdown in the 2000s and the more recent accelerated warming, which were absent in OMIP-1, noting that the last feature is part of the design of OMIP-2 because OMIP-1 forcing stopped in 2009. A negative bias in the sea-ice concentration in summer of both hemispheres in OMIP-1 is significantly reduced in OMIP-2. The overall reproducibility of both seasonal and interannual variations in sea surface temperature and sea surface height (dynamic sea level) is improved in OMIP-2. These improvements represent a new capability of the OMIP-2 framework for evaluating process-level responses using simulation results. Regarding the sensitivity of individual models to the change in forcing, the models show well-ordered responses for the metrics that are directly forced, while they show less organized responses for those that require complex model adjustments. Many of the remaining common model biases may be attributed either to errors in representing important processes in ocean–sea-ice models, some of which are expected to be reduced by using finer horizontal and/or vertical resolutions, or to shared biases and limitations in the atmospheric forcing. In particular, further efforts are warranted to resolve remaining issues in OMIP-2 such as the warm bias in the upper layer, the mismatch between the observed and simulated variability of heat content and thermosteric sea level before 1990s, and the erroneous representation of deep and bottom water formations and circulations. We suggest that such problems can be resolved through collaboration between those developing models (including parameterizations) and forcing datasets. Overall, the present assessment justifies our recommendation that future model development and analysis studies use the OMIP-2 framework.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
    Format: application/pdf
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  • 4
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature 188 (1960), S. 1201-1202 
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] We succeeded in separating reticulocytes by means of a multi-layer centrifugation with a gum acacia solution. The separating procedures are similar to those of leucocytes and bone marrow cells6,7 reported previously. The technique depends on the difference in densities between reticulocytes and ...
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature 218 (1968), S. 955-957 
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] The secondary link must be involved in the bathochromic shift of absorption spectrum, a distinguishing-property of rhodopsin. We have examined the effects of denaturants of protein on the linkage between retinal and opsin and obtained results supporting the Schiff base hypothesis16. When rhodopsin ...
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    The @journal of organic chemistry 46 (1981), S. 5324-5328 
    ISSN: 1520-6904
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 7
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 8
    ISSN: 1574-695X
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: The virulence of Yersinia enterocolitica is known to be highly dependent on its virulence plasmid. However, it remains unclear whether the virulence plasmid is engaged also in the induction of cell-mediated immunity that is essential for protective immunity in the host. In this study, we have compared the induction of type 1 helper T cell immunity against Y. enterocolitica using a virulent strain (P+) harboring the pYV plasmid and an avirulent strain (P−) harboring no pYV. Spleen cells from both groups of mice immunized with 1/10 LD50 of P+ strain and those with 1/10 LD50 of P− strain produced a high level of gamma interferon (IFN-γ) upon stimulation with heat-killed bacteria, and CD4+ T cells were exclusively responsible for IFN-γ production. When crude Yersinia outer proteins (Yops) were used for antigenic stimulation, IFN-γ response of immune spleen cells against crude Yops was observed only in mice immunized with P+ strain. Flowcytometric analysis revealed a significant level of increase in IFN-γ-producing CD8+ T cells as well as the increase in IFN-γ-producing CD4+ T cells against crude Yops. These results suggest that the virulence plasmid of Y. enterocolitica is involved in the induction of Th1-type of possibly protective T cells in infected mice.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Journal of oceanography 56 (2000), S. 485-494 
    ISSN: 1573-868X
    Keywords: Intraseasonal variation ; ENSO ; zonal wind ; warm water pool ; equatorial Pacific ; GCM
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences
    Notes: Abstract The effects of intra-seasonal wind forcing on the mean field of the tropical Pacific Ocean has been studied using an ocean general circulation model (GCM). Idealized intra-seasonal zonal wind forcing with zero mean, which propagates eastward, induces net eastward jets at the equator that shift the warm water pool to the east. The mean temperature of the upper 200 m of the ocean increases off the equator and decreases at the equator. The change is independent of the propagation speed of the intra-seasonal wind forcing. The magnitude of the change depends on the amplitude and the period of the forcing, and the ocean structure, while the spatial pattern is independent of these parameters. A simple shallow water model is used to explain these changes. It is found that the term responsible for the enhanced eastward Equatorial jet is the Reynolds stress term, which arises from a phase shift of the zonal current due to friction. The resultant convergence of eastward momentum on the equator and geostrophic adjustment of the interface to the change of zonal current brings about the thermal redistribution of the upper ocean seen in the GCM.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Journal of comparative physiology 165 (1989), S. 589-604 
    ISSN: 1432-1351
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Summary The intracellular distribution of visual pigments in the retinular cells of compound eyes of a butterfly (Papilio), a moth (Actias), a water scorpion (Ranatra), a dragonfly (Pantala), a crayfish (Procambarus), and a crab (Hemigrapsus) were investigated. The experiments measured the total surface area of rhabdom membrane in single compound eyes by light and electron microscopy, the densities of intramembrane particles in rhabdoms of compound eyes by freeze-fracture methods, and the quantities of chromophore molecules in compound eyes by high pressure liquid chromatography. Four species (moth, water scorpion, dragonfly, and crayfish) contain more than 75% of total chromophore probably as visual pigments in their rhabdoms, but the butterfly and the crab contain only 28.6% and 39.2%, respectively. The remainder of the chromophore molecules (Papilio 71.4%,Actias 5.7%,Ranatra 18.9%,Pantala 23.2%,Procambarus 24.3%, andHemigrapsus 60.8%) are supposed to exist mostly in the cytoplasm of the retinular cells. The localizing sites of such extrarhabdomeric chromophores are discussed in relation to the cytoplasmic membrane systems such as endoplasmic reticulum and lysosomal elements. In view of the results of the present experiment, it seems clear that the butterfly,Papilio, possesses a very large extra-rhabdomeric pool of chromophore that is available for rapid regeneration of visual pigment.
    Type of Medium: Electronic Resource
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