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  • 1
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Plant pathology 38 (1989), S. 0 
    ISSN: 1365-3059
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: DNA isolated from the formae speciales of Erysiphe graminis that grow on barley, wheat, rye and oats was studied using restriction endonucleases and DNA/DNA hybridization procedures. DNA fragments were purified by molecular cloning and a few containing repeated sequences were used to demonstrate the many variations in restriction fragments both within and between the fourformae speciales. In an analysis of six single-colony isolates of the barley mildew pathogen collected from different UK sites in different years, more than a quarter of the fragments scored varied among isolates. One isolate, with an uncommon pathogenicity character, differed from the remainder in the distribution of DNA bands. Isolates of rye mildew were also distinct from one another but isolates of oat mildew from a population of similar size appeared to belong to a single clone.It is concluded that the chromosomes of E. graminis contain many families of dispersed repeated sequences and that there may be extensive polymorphism for restriction endonuclease cleavage sites associated with these repeats. Such unselected polymorphisms could be useful in helping to understand and discriminate among the factors affecting population structure in the pathogen as it responds to different agricultural practices.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Plant pathology 42 (1993), S. 0 
    ISSN: 1365-3059
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: In 1986, two spring barley cultivars were widely grown in the UK for the first time: Klaxon, which carries the powdery mildew resistance alleles Mla7, Mlk and Ml(La), and Natasha (Mla12 + Ml(Ab)). Significant amounts of a third cultivar, Doublet (Mla7+ Ml(La)), were grown for the first time in 1986. The individual resistance genes, and the combination Mla7+Mlk, had previously been used separately in different varieties. Isolates of the mildew pathogen Erysiphe graminis f.sp. hordei, which were virulent on Doublet and Klaxon, were rare up to June 1986. One clone of E. g. f.sp. hordei, virulent on Doublet and Klaxon, increased in frequency from 〈 1% to 36% from June to October 1986, in samples from the airborne population in Cambridge, UK. This consisted of isolates with apparently identical virulences, responses to fungicides and genetic fingerprints. It also formed the majority of Doublet-virulent mildew sampled from a field of Doublet near Cambridge in 1987. By contrast, isolates virulent on Natasha were already common and genetically diverse in 1985:22 of 100 isolates sampled in October 1985, belonging to 13 races, were virulent. Natasha appeared not to influence the E. g. f.sp. hordei population greatly, as the frequency of Natasha-virulent isolates fell slightly, from 15·5% to 11·7% between June and October 1986. No single clone predominated in the Natasha-virulent population. These results support the view that new epidemics of barley powdery mildew in the UK arise by highly stochastic evolution of E. g. f.sp. hordei populations. They also indicate that varieties with new combinations of previously exposed resistance genes do not necessarily provide durable control of mildew, because the frequency of a virulent clone may rise rapidly.
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  • 3
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Plant pathology 39 (1990), S. 0 
    ISSN: 1365-3059
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: The distribution of restriction-fragment-length polymorphisms (RFLPs) among isolates of Erysiphe graminis f.sp. hordei was used to test hypotheses about the structure of the pathogen population. There was a large diversity in the lengths of DNA restriction fragments homologous to E9, a chromosomal fragment of unknown function. It was shown that a large group of isolates, which shared identical or very similar virulence phenotypes, including virulence on the barley cv. Triumph, were members of a single clone. Several other clones were identified, including a second group of identical isolates which were virulent on cv. Triumph but were highly distinct from the more common clone of Triumph-virulent isolates. Isolates which shared the same level of resistance to the triazole fungicide triadimenol were genetically diverse. Such diversity is consistent with triadimenol resistance being under oligogenic, rather than polygenic, control. Conclusions obtained from analysis of the most easily identifiable subset of fragment lengths were very similar to those obtained from analysis of the complete set.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Palo Alto, Calif. : Annual Reviews
    Annual Review of Plant Physiology and Plant Molecular Biology 49 (1998), S. 77-95 
    ISSN: 1040-2519
    Source: Annual Reviews Electronic Back Volume Collection 1932-2001ff
    Topics: Biology
    Notes: Abstract The purpose of this review is to highlight the unique and common features of splice site selection in plants compared with the better understood yeast and vertebrate systems. A key question in plant splicing is the role of AU sequences and how and at what stage they are involved in spliceosome assembly. Clearly, intronic U- or AU-rich and exonic GC- and AG-rich elements can influence splice site selection and splicing efficiency and are likely to bind proteins. It is becoming clear that splicing of a particular intron depends on a fine balance in the "strength" of the multiple intron signals involved in splice site selection. Individual introns contain varying strengths of signals and what is critical to splicing of one intron may be of less importance to the splicing of another. Thus, small changes to signals may severely disrupt splicing or have little or no effect depending on the overall sequence context of a specific intron/exon organization.
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  • 5
    Publication Date: 2015-07-29
    Description: The mechanisms by which poikilothermic organisms ensure that biological processes are robust to temperature changes are largely unknown. Temperature compensation, the ability of circadian rhythms to maintain a relatively constant period over the broad range of temperatures resulting from seasonal fluctuations in environmental conditions, is a defining property of circadian...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 6
    Publication Date: 2012-12-14
    Description: Alternative splicing (AS) of pre-mRNAs is an important regulatory mechanism shaping the transcriptome. In plants, only few RNA-binding proteins are known to affect AS. Here, we show that the glycine-rich RNA-binding protein At GRP7 influences AS in Arabidopsis thaliana . Using a high-resolution RT–PCR-based AS panel, we found significant changes in the ratios of AS isoforms for 59 of 288 analyzed AS events upon ectopic At GRP7 expression. In particular, At GRP7 affected the choice of alternative 5' splice sites preferentially. About half of the events are also influenced by the paralog At GRP8, indicating that At GRP7 and At GRP8 share a network of downstream targets. For 10 events, the AS patterns were altered in opposite directions in plants with elevated At GRP7 level or lacking At GRP7. Importantly, RNA immunoprecipitation from plant extracts showed that several transcripts are bound by At GRP7 in vivo and indeed represent direct targets. Furthermore, the effect of At GRP7 on these AS events was abrogated by mutation of a single arginine that is required for its RNA-binding activity. This indicates that At GRP7 impacts AS of these transcripts via direct interaction. As several of the AS events are also controlled by other splicing regulators, our data begin to provide insights into an AS network in Arabidopsis .
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 7
    Publication Date: 2012-03-29
    Description: Alternative splicing (AS) coupled to nonsense-mediated decay (NMD) is a post-transcriptional mechanism for regulating gene expression. We have used a high-resolution AS RT–PCR panel to identify endogenous AS isoforms which increase in abundance when NMD is impaired in the Arabidopsis NMD factor mutants, upf1-5 and upf3-1 . Of 270 AS genes (950 transcripts) on the panel, 102 transcripts from 97 genes (32%) were identified as NMD targets. Extrapolating from these data around 13% of intron-containing genes in the Arabidopsis genome are potentially regulated by AS/NMD. This cohort of naturally occurring NMD-sensitive AS transcripts also allowed the analysis of the signals for NMD in plants. We show the importance of AS in introns in 5' or 3'UTRs in modulating NMD-sensitivity of mRNA transcripts. In particular, we identified upstream open reading frames overlapping the main start codon as a new trigger for NMD in plants and determined that NMD is induced if 3'-UTRs were 〉350 nt. Unexpectedly, although many intron retention transcripts possess NMD features, they are not sensitive to NMD. Finally, we have shown that AS/NMD regulates the abundance of transcripts of many genes important for plant development and adaptation including transcription factors, RNA processing factors and stress response genes.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 8
    Publication Date: 2014-01-28
    Description: How alternative splicing (AS) is regulated in plants has not yet been elucidated. Previously, we have shown that the nuclear cap-binding protein complex (AtCBC) is involved in AS in Arabidopsis thaliana. Here we show that both subunits of AtCBC (AtCBP20 and AtCBP80) interact with SERRATE (AtSE), a protein involved in the microRNA biogenesis pathway. Moreover, using a high-resolution reverse transcriptase-polymerase chain reaction AS system we have found that AtSE influences AS in a similar way to the cap-binding complex (CBC), preferentially affecting selection of 5' splice site of first introns. The AtSE protein acts in cooperation with AtCBC: many changes observed in the mutant lacking the correct SERRATE activity were common to those observed in the cbp mutants. Interestingly, significant changes in AS of some genes were also observed in other mutants of plant microRNA biogenesis pathway, hyl1-2 and dcl1-7 , but a majority of them did not correspond to the changes observed in the se-1 mutant. Thus, the role of SERRATE in AS regulation is distinct from that of HYL1 and DCL1, and is similar to the regulation of AS in which CBC is involved.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 9
    Publication Date: 1998-06-01
    Print ISSN: 1040-2519
    Topics: Biology
    Published by Annual Reviews
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  • 10
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