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  • 1
    Monograph available for loan
    Monograph available for loan
    London [u.a.] : Chapman & Hall
    Call number: PIK N 630-92-0666
    Type of Medium: Monograph available for loan
    Pages: 352 p.
    Edition: 1. Aufl.
    ISBN: 0412269007
    Series Statement: Population and Community Biology series 11
    Location: A 18 - must be ordered
    Branch Library: PIK Library
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  • 2
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    Washington : Ecological Society of America
    Call number: ZS-050
    ISSN: 0012-9658
    Branch Library: GFZ Library
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  • 3
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in BMC Bioinformatics 14 (2013): 16, doi:10.1186/1471-2105-14-16.
    Description: The digitization of biodiversity data is leading to the widespread application of taxon names that are superfluous, ambiguous or incorrect, resulting in mismatched records and inflated species numbers. The ultimate consequences of misspelled names and bad taxonomy are erroneous scientific conclusions and faulty policy decisions. The lack of tools for correcting this ‘names problem’ has become a fundamental obstacle to integrating disparate data sources and advancing the progress of biodiversity science. The TNRS, or Taxonomic Name Resolution Service, is an online application for automated and user-supervised standardization of plant scientific names. The TNRS builds upon and extends existing open-source applications for name parsing and fuzzy matching. Names are standardized against multiple reference taxonomies, including the Missouri Botanical Garden's Tropicos database. Capable of processing thousands of names in a single operation, the TNRS parses and corrects misspelled names and authorities, standardizes variant spellings, and converts nomenclatural synonyms to accepted names. Family names can be included to increase match accuracy and resolve many types of homonyms. Partial matching of higher taxa combined with extraction of annotations, accession numbers and morphospecies allows the TNRS to standardize taxonomy across a broad range of active and legacy datasets. We show how the TNRS can resolve many forms of taxonomic semantic heterogeneity, correct spelling errors and eliminate spurious names. As a result, the TNRS can aid the integration of disparate biological datasets. Although the TNRS was developed to aid in standardizing plant names, its underlying algorithms and design can be extended to all organisms and nomenclatural codes. The TNRS is accessible via a web interface at http://tnrs.iplantcollaborative.org/ webcite and as a RESTful web service and application programming interface. Source code is available at https://github.com/iPlantCollaborativeOpenSource/TNRS/ webcite.
    Description: BJE was supported by NSF grant DBI 0850373 and TR by CSIRO Marine and Atmospheric Research, Australia,. BB and BJE acknowledge early financial support from Conservation International and TEAM who funded the development of early prototypes of taxonomic name resolution. The iPlant Collaborative (http://www.iplantcollaborative.org) is funded by a grant from the National Science Foundation (#DBI-0735191).
    Keywords: Biodiversity informatics ; Database integration ; Taxonomy ; Plants
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Format: application/vnd.ms-excel
    Format: text/csv
    Format: text/plain
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  • 4
    ISSN: 1435-0629
    Keywords: Key words: disturbance frequency; disturbance intensity; disturbance size; dispersal distance; landscape ecology; patch size; succession.
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: ABSTRACT Disturbance events vary in intensity, size, and frequency, but few opportunities exist to study those that are extreme on more than one of these gradients. This article characterizes successional processes that occur following infrequent disturbance events that are exceptional in their great intensity or large size. The spatial variability in disturbance intensity within large, infrequent disturbances (LIDs) often leads to a heterogeneous pattern of surviving organisms. These surviving organisms dictate much of the initial successional pattern on large disturbances where the opportunities for seeds to disperse into the middle of the disturbance are limited. The traditional distinction between primary and secondary succession is insufficient to capture the tremendous variability in succession following LIDs. Disturbance size influences succession where long-distance colonization by propagules is important. Observations from LIDs suggest the following interrelated hypotheses about trends in succession with increasing distance from seed sources when disturbanceintensity is high: (a) initial densities of organisms will be lower; (b) nucleation processes, in which recovering patches serve as foci for additional colonization and expand spatially, will be more important; (c) competitive sorting will be less important relative to chance arrival in determination of community composition, and (d) community composition will be initially less predictable; and (e) the rate of recovery of community composition will be slower. Prediction of succession following LIDs without considering contingencies such as the abundance, types, and spatial distribution of residuals, and distance to seed sources is likely to be unsuccessful for large portions of the landscape. Abundance and spatial arrangement of survivors and arrival patterns of propagules may be the pivotal factors determining how succession differs between intense disturbances of large and small extent.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Plant ecology 45 (1981), S. 3-75 
    ISSN: 1573-5052
    Keywords: Colorado ; Forests ; Front Range ; Gradient analysis ; Population structure ; Rockey Mountains ; Succession ; Vegetation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The forest vegetation of the northern Colorado Front Range was studied using a combination of gradient analysis and classification methods. A graphical model of forest composition based on elevation and topographic-moisture gradients was constructed using 305 0.1 ha samples. To derive the topographic moisture gradient, stands were stratified into eight 200 m elevation belts, and then ordinated by correspondence analysis using understory (〈1 m) data. Each of the resultant gradients was scaled against a standard site moisture scalar derived from incident solar radiation and topographic position. Except for krummholz sites, the vegetation defined gradients fit the moisture scalar closely. Once scaled, these gradients were stacked vertically, sandwich-style, to create the graphical representation shown in Figure 5. Gradient analysis and ordination (direct and indirect gradient analysis of Whittaker, 1967) are frequently viewed as alternative approaches for analysis of vegetation. With gradient analysis the axes are readily interpretable, but stand placement is often difficult and at times questionable. Ordination defines an optimal arrangement for species and/or stands, but axis interpretation is often impossible. With the present combination of methods, the interpretability of gradient analysis complements the precision of placement obtained with ordination. Forest vegetation was classified by dividing the gradient model into eight series and 29 types on the basis of similar successional trends in canopy dominants. On dry, low-elevation sites above 1 700 m Pinus ponderosa woodlands dominate. With increasing elevation or site moisture, tree density increases and Pinus ponderosa, Pseudotsuga forests prevail. At middle elevations on mesic sites forests of mixed composition occur. Pinus contorta forests dominate at middle elevations over much of the central position of the moisture gradient, though these are primarily post-fire forests. With protection from fire only a small percentage of sites retain dominance by Pinus contorta. Over the lower portion of its range Pinus contorta is succeeded by Pseudotsuga, while at higher elevations Abies lasiocarpa and Picea engelmannii can eventually achieve dominance. At high elevations on all except the driest sites Picea engelmannii and Abies lasiocarpa are exclusive dominants, both after disturbance and in climax forests. Pinus flexilis dominates on the driest high-elevation sites. Above 3 500 m forests are replaced by alpine tundra, often with a transitional krummholz zone. Structure and post-fire development were examined in the context of the gradient-based classification scheme. Three generalized types of forest development were recognized as reference points in a continuum of developmental patterns varying with both elevation and soil moisture. On favorable, middle-elevation sites, trees become established rapidly after disturbance. Rapid growth results in severe overcrowding and competitive elimination of reproduction. As a consequence bell-shaped diameter distributions develop. Diversity and productivity appear to drop while biomass remains roughly constant. Following decades or even centuries of stagnation, the forests eventually breakup through mortality of the canopy trees, thereby allowing regeneration to resume. During this period of renewed regeneration, biomass, diversity, and productivity all show dramatic changes in response to the changing population structure (Fig. 9). This type of forest development can be found in forests dominated by Picea engelmannii and Abies lasiocarpa, Pinus contorta, Pseudotsuga menzeisii, Pinus flexilis or Populus tremuloides. On highest elevation forest sites or at middle elevations on the very driest sites reestablishment rates are greatly reduced. These forests dominated by Picea and Abies or Pinus flexilis gradually approach predisturbance levels of biomass, diversity and productivity, while regeneration remains at a roughly constant level. At lower elevations in the Pinus ponderosa woodlands, regeneration appears episodic, reflecting variation in seed rain and favorable conditions for seedling growth. Here, inter-tree competition is relatively unimportant and diameter distributions show irregular humps resulting from periodic recruitment. A few species pairs presented consistent problems and their treatment as single species was necessary. Garex rossii and C. brevipes were lumped as Carex rossii. Rosa woodsii and R. acicularis were lumped as Rosa sp. Cirsium scopulorum and C. coloradense were lumped as Cirsium coloradense. Extreme forms of Arnica cordifolia and A. latifolia are easily distinguishable, but as these species intergrade and hybridize extensively, they have been lumped as Arnica cordifolia. The native bluegrass, Poa agassizensis, was lumped with Poa paratensis. Solidago missouriensis includes some S. canadensis.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Plant ecology 80 (1989), S. 153-165 
    ISSN: 1573-5052
    Keywords: Detrended correspondence analysis ; Ordination ; Procrustes rotation ; Resampling ; Rotational instability ; Scaled rank variance
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Indirect gradient analysis, or ordination, is primarily a method of exploratory data analysis. However, to support biological interpretations of resulting axes as vegetation gradients, or later confirmatory analyses and statistical tests, these axes need to be stable or at least robust into minor sampling effects. We develop a computer-intensive bootstrap (resampling) approach to estimate sampling effects on solutions from nonlinear ordination. We apply this approach to simulated data and to three forest data sets from North Carolina, USA and examine the resulting patterns of local and global instability in detrended correspondence analysis (DCA) solutions. We propose a bootstrap coefficient, scaled rank variance (SRV), to estimate remaining instability in species ranks after rotating axes to a common global orientation. In analysis of simulated data, bootstrap SRV was generally consistent with an equivalent estimate from repeated sampling. In an example using field data SRV, bootstrapped DCA showed good recovery of the order of common species along the first two axes, but poor recovery of later axes. We also suggest some criteria to use with the SRV to decide how many axes to retain and attempt to interpret.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Plant ecology 43 (1980), S. 131-140 
    ISSN: 1573-5052
    Keywords: Forests ; Mortality ; North Carolina ; Plant demography ; Succession ; Thinning ; Vegetation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Recent critical reviews suggest the need for a reductionistic approach to the study of secondary plant succession. We propose viewing succession as the result of the underlying plant population dynamics. This approach is being developed using nearly 50 years of permanent sample plot records. After initial establishment Pinus taeda shows an exponential depletion with stands of various densities conforming to the reciprocal yield relationship. Uneven-aged hardwoods also show exponential depletion. Canopy disturbance can enhance the establishment process, though severe disturbance and the consequent abundant regeneration can lead again to dense, even-aged stands with low levels of establishment. These results suggest a general pattern of forest development wherein establishment is initially important, but is quickly replaced by mortality as the dominant process when the dense, even-sized stand starts to thin. Eventually, failing additional disturbance, natural mortality will again open the canopy allowing development of a balance between establishment, and mortality.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    Springer
    Plant ecology 55 (1984), S. 163-179 
    ISSN: 1573-5052
    Keywords: Biomass ; Coastal plain ; Fire ; Grassland ; North Carolina ; Phenology ; Pinus palustris ; Primary production ; Savanna
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Fire-maintained, species-rich pine-wiregrass savannas in the Green Swamp, North Carolina were sampled over their natural range of environmental conditions and fire frequencies. Species composition, species richness, diversity (Exp H′, 1/C), and aboveground production were documented and fertilization experiments conducted to assess possible mechanisms for the maintenance of high species diversity in these communities. Although savanna composition varies continuously, DECORANA ordination and TWINSPAN classification of 21 sites facilitated recognition of 3 community types: dry, mesic, and wet savannas. These savannas are remarkably species-rich with up to 42 species/0.25 m2 and 84 species/625 m2. Maximum richness occurred on mesic, annually burned sites. Aboveground production, reported as peak standing crop, was only 293 g · m−2 on a frequently burned mesic savanna but was significantly higher (375 g · m−2) on an infrequently burned mesic site. Production values from fertilized high and low fire frequency sites were equivalent. Monthly harvest samples showed that savanna biomass composition by species groups did not vary seasonally, but within groups the relative importance of species showed clear phenological progressions. The variation in species richness with fire frequency is consistent with non-equilibrium theories of species diversity, while phenological variation in production among similar species and the changing species composition across the moisture gradient suggest the importance of equilibrium processes for maintenance of savanna diversity.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Plant ecology 37 (1978), S. 65-78 
    ISSN: 1573-5052
    Keywords: Colorado ; Diversity ; Rocky Mountains ; Species diversity ; Stratal relationships ; Succession
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Plant species diversity patterns of the Rocky Mountain forests were found to be at variance with patterns reported from other regions. The most centrally located forests in terms of elevation, site moisture and successional status were found to have the lowest diversity. In contrast, the peripheral and environmentally more severe sites were found to have relatively high diversity. In particular, the forest-grassland transition and the low elevation riparian forests have species diversity values as high as any yet reported from western North America. When diversity was examined in terms of variation across elevation or moisture gradients, varying results were obtained due to the interaction of these factors. The failure of previous studies to converge on generalizations about plant diversity reflects, in part, the failure of most investigators to view diversity in a regional context of variation across several interacting gradients. Diversity was seen to vary inversely with the degree of development of the forest canopy. The interaction of different components of the forest community is one reason for the failure of general patterns of plant species diversity to emerge from previous studies. A potentially rich herb community can be greatly suppressed by a single species tree stratum. Among the most successful work to date on species diversity is that on birds, a distinct albeit large and functional group. It is unlikely that similar success could have been achieved through work on all animal species simultaneously. This suggests the need to examine plant species diversity, not in terms of total diversity, but in terms of component functional groups, perhaps guilds, growing under similar microclimatic conditions and subject to similar competitive pressures.
    Type of Medium: Electronic Resource
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  • 10
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