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  • 1
    ISSN: 1432-184X
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The nutritional responses of unattached and attached bacterial communities were studied in groundwater from 3 sampling depths, i.e., 830–841 m, 910–921 m, and 999–1,078 m, of the subvertical borehole KLX01 at the Laxemar study area in SE Sweden. The salinity profile of the groundwater in this borehole is homogeneous. There were negative redox potentials (Eh) in the waters (−220 to −270 mV) and they contained sulfide, hydrogen, and methane. Biofilm reactors with hydrophilic glass surfaces were connected to the flowing groundwaters from each of the 3 depths with flow rates of approximately 3 x 10−3 m sec−1 over 19 days. There were 0.15 to 0.68 × 105 unattached bacteria ml−1 groundwater and 0.94 to 1.2 × 105 attached bacteria cm−2 on the surfaces. The assimilations of 14CO2, 14C-formate, 1,2,3-3H-acetate, U-14C-lactate, U-14C-glucose, and L-4,5-3H-leucine by the communities were demonstrated with microautoradiographic and liquid scintillation counting techniques. There were significant assimilations of CO2 by all communities, except for the unattached bacteria at the 910–921 m depth, indicating in situ production of organic carbon from carbonate. Assimilation of formate was detected in two communities, indicating the presence of bacteria able to substitute CO2 with formate. Acetate, lactate, and glucose assimilations demonstrated the presence of heterotrophic bacteria. The assimilation of lactate by the attached bacteria dominated over acetate and glucose at all depths. Leucine was assimilated by 20 to 98% of the communities, which showed that major portions of the communities studied were viable. The results indicate that the attached communities at the 830–841 m and 910–921 m depths were in more metabolically active states than the unattached bacteria. Incubation in air compared with N2 indicated that portions of the studied communities were obligate anaerobes, as their ability to assimilate the added compounds was sensitive to oxygen. The results show that the use of several different compounds reduces the risk for false conclusions about the viability and the metabolic activity of the deep groundwater communities.
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  • 2
    ISSN: 1432-072X
    Keywords: Attachment of bacteria ; Biofilm development ; Continuous culture ; Biofilm reactor ; Fluid shear ; Analysis of variance ; Vibrio ; Pseudomonas ; Immobilization of bacteria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A budding coccoid bacterium, (CH1), a Vibrio sp. and a Pseudomonas sp. were investigated for factors governing their attachment to glass surfaces in static batch culture and laminar flow continuous culture systems. An analysis of variance showed that the three species exhibited very different responses. For CH1 attachment was dependent on cell density, incubation time and nutrient concentration. The Vibrio sp. was affected by nutrient concentration while the attachment of the Pseudomonas sp. was independent of cell density, incubation time and nutrient concentration. A comparison of attachment to hydrophilic and hydrophobic surfaces showed that attachment of the Vibrio sp. and CH1 to hydrophilic surfaces was 3 and 10 times greater respectively than to hydrophobic surfaces while Pseudomonas attached in equal numbers to both surfaces. The continuous culture system with defined flow hydrodynamics and growth conditions at steady state revealed a random sampling effect 3 times smaller than the batch culture system did. When the biofilm development of Pseudomonas sp. was followed during 46 h at different fluid shear under laminar and turbulent flow conditions, the former biofilm reached 3.3·108 cells·cm-2 and the latter 8.2·107 cells·cm-2.
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  • 3
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 12 (1981), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 141 (1996), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract Long-lived radioactive waste will be buried several hundred meters below ground in metal canisters surrounded by a buffer of compacted bentonite. Sulfate-reducing bacteria present in the bentonite may induce canister corrosion by production of hydrogen sulfide. Here we show that survival of sulfate-reducing bacteria in bentonite depends on the availability of water and that compacting a high quality bentonite to a water activity (aw) of 0.96 was lethal for the species investigated.
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  • 5
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 26 (1998), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: This study reveals the existence of active chemoautolithotrophic microbial communities in deep granitic groundwater, containing hydrogen and methane. Homoacetogens and acetotrophic methanogens dominated in the groundwater down to a depth of 112 m, while autotrophic methanogens prevailed deeper, down to 446 m. The results from most probable number counts showed that viable methanogens and homoacetogens coexisted at all depths investigated, from 45 m to 446 m below sea level. In vitro radiotracer experiments demonstrated these microorganisms to form methane and acetate from CO2 with hydrogen, and methane from [14C]acetate at close to in situ temperature (17°C). The data suggest that autotrophic methanogens and homoacetogens initiate a deep subterranean food chain and that acetate-dependent methane formation is mediated by homoacetogenesis. The finding of an active, deep, hydrogen based autotrophic biosphere adds a significant but previously overlooked reducing activity to deep granitic rock.
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology reviews 20 (1997), S. 0 
    ISSN: 1574-6976
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The presence and diversity of methanogens and homoacetogens in deep granitic rock groundwater from Äspö Hard Rock Laboratory were studied. Concentrations of hydrogen and methane in Äspö groundwater were 45 nM–100 μM and 19–1000 μM, respectively. Groundwater-based media were used to count viable cells in the groundwaters from the subsurface. Different physiological groups of methanogens (autotrophic H2/CO2 consuming and heterotrophic acetate, methanol and trimethylamine consuming) were found at depths ranging from 68 to 446 m below sea level in numbers from 12 to 4.5×105 cells/ml. Viable numbers of different physiological groups of methanogens and autofluorescent cells were counted repeatedly during a period of 1 year in the groundwater. The counts were reproducible in the same boreholes at different sampling times. Methane production was observed in the groundwater with added methanogenic substrates, at anaerobic conditions, at 17°C, after 20–50 days of adaptation. The most active methane production took place in those groundwaters that were sources of methanogenic enrichment and pure cultures. Methanosarcina-like organisms were observed in groundwater from depths of 45–68 m and active enrichment cultures. 16S rRNA gene sequencing of enrichment cultures indicated the presence of a psychrophilic Methanohalophilus related organism at a depth of 414 m. A new species of alkaliphilic Methanobacterium was isolated from depths of 68, 409 and 420 m and studied. Homoacetogenic Bacteria were found in the granitic groundwater as viable cells from 10 to 3.6×104 cells/ml and produced acetate autotrophically. It appears that deep granitic groundwater is inhabited by autotrophic methanogens and acetogens, which may produce methane and acetate at the expense of subterranean hydrogen and bicarbonate.
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  • 7
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology reviews 20 (1997), S. 0 
    ISSN: 1574-6976
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Granitic rock has aquifers that run through faults and single or multiple fracture systems. They can orientate any way, vertically or horizontally and usually, only parts of hard rock fractures are water conducting. The remaining parts are filled by coatings of precipitated minerals, and clay and gouge material. Sampling hard rock is difficult and the risk of contamination due to intrusion of drilling fluids and cuttings in aquifers is obvious. A recent investigation of the potential for contamination of boreholes in granite during drilling operations, using molecular and growth methods, showed that predominating microorganisms in the drilling equipment were absent in groundwater from the drilled boreholes. The total number of bacteria found in subterranean granitic environments ranges from 103 up to 107 cells per ml groundwater, but the number of cultivable microorganisms is usually much lower. We have used culturing techniques with numeric taxonomy for the identification of cultivable microorganisms and the 16S rRNA gene technique to determine bacterial diversity in granitic groundwater. Members of the genera Bacillus, Desulfovibrio, Desulfomicrobium, Eubacterium, Methanomicrobium, Pseudomonas, Serratia and Shewanella have been found. Several biogeochemical processes in granitic rock have been demonstrated where microorganisms seem to be of major importance. One process is the mobilization of solid phase ferric iron oxy-hydroxides to liquid phase ferrous iron by iron reducing bacteria with organic carbon as electron donor. Another biogeochemical process found to be important is the reduction of sulfate to sulfide by sulfate reducing bacteria. They frequently appear in granitic aquifers at depths, and seem to prefer a moderate salinity, approximately 1%. When groundwater rich in ferrous iron, manganese(II) and reduced sulfur compounds reaches an oxygenated atmosphere such as an open tunnel, gradients suitable for chemolithotrophic bacteria develop. A third process is the conversion of carbon dioxide to organic material with hydrogen as the source of energy, possibly formed through radiolysis, mineral reactions or by volcanic activity. Recent results show that autotrophic methanogens, acetogenic bacteria and acetoclastic methanogens all are present and active in deep granitic rock. These observations announce the existence of a hydrogen driven deep biosphere in crystalline bedrock that is independent of photosynthesis. If this hypothesis is true, life may have been present and active deep down in the earth for a very long time, and it cannot be excluded that the place for the origin of life was a deep subterranean igneous rock environment (probably hot with a high pressure) rather than a surface environment.
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  • 8
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 39 (2002), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Microbial populations in 16 groundwater samples from six Fennoscandian Shield sites in Finland and Sweden were investigated. The average total cell number was 3.7×105 cells ml−1, and there was no change in the mean of the total cell numbers to a depth of 1390 m. Culture media were designed based on the chemical composition of each groundwater sample and used successfully to culture anaerobic microorganisms from all samples between 65 and 1350 m depth. Between 0.0084 and 14.8% of total cells were cultured from groundwater samples. Sulfate-reducing bacteria, iron-reducing bacteria and heterotrophic acetogenic bacteria were cultured from groundwater sampled at 65–686 m depth in geographically distant sites. Different microbial populations were cultured from deeper, older and more saline groundwater from 863 to 1350 m depth. Principal component analysis of groundwater chemistry data showed that sulfate- and iron-reducing bacteria were not detected in the most saline groundwater. Iron-reducing bacteria and acetogens were cultured from deep groundwater that contained 0.35–3.5 mM sulfate, while methanogens and acetogens were cultured from deep sulfate-depleted groundwater. In one borehole from which autotrophic methanogens were cultured, dissolved inorganic carbon was enriched in 13C compared to other Fennoscandian Shield groundwater samples, suggesting that autotrophs were active. It can be concluded that a diverse microbial community is present from the surface to over 1300 m depth in the Fennoscandian Shield.
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  • 9
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract: A total of 155 16S rRNA genes that were cloned from unattached and attached bacteria in nine boreholes down to 626 m below ground were partially sequenced. Attached bacteria were examined with scanning electron microscopy (SEM). The distribution of the 16S rRNA genes found was related to the different types of groundwaters studied. Several of the sequences obtained could be identified on genus level as one of the genera Acinetobacter, Bacillus, Desulfovibrio or Thiomicrospira. The 16S rRNA genes from 20 selected isolates were closely related to the sulphate reducers Desulfomicrobium baculatum or Desulfovibrio sp., the iron reducer Shewanella putrefaciens, or distantly related to the Gram-positive genus Eubacterium. Viable counts confirmed the presence of sulphate-reducing bacteria.
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    BioMetals 9 (1996), S. 169-175 
    ISSN: 1572-8773
    Keywords: bacteria ; adsorption ; uptake ; metals
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Abstract Passive and active accumulation of zinc and cadmium by a common soil and freshwater bacterium, Cytophaga johnsonae, was studied using a radio-tracer batch distribution technique. The effects of variation of pH (3–10), as well as of ionic strength (0.007 and 0.07 m) on passive accumulation of the metals were examined. For both zinc and cadmium, accumulation was mainly due to passive processes, such as surface adsorption and/or diffusion into the periplasm. However, at low zinc concentrations, accumulation increased when glucose was added, suggesting an active uptake; at higher zinc concentrations such uptake was not detected, probably because it was masked by the stronger sorption properties of the cell wall. Adsorption of the metals was pH dependent: at higher ionic strength, accumulation was enhanced at pH values above 7; at lower ionic strength, adsorption differed and was markedly higher, with increased accumulation between pH 5 and 8.
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