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  • 1
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    PANGAEA
    In:  Supplement to: Mather, Ian D; Wellsbury, Peter; Parkes, R John; Maxwell, James R (2001): Purge-trap analysis of sediments of the western Woodlark Basin, Sites 1109 and 1115. In: Huchon, P; Taylor, B; Klaus, A (eds.) Proceedings of the Ocean Drilling Program, Scientific Results, College Station, TX (Ocean Drilling Program), 180, 1-14, https://doi.org/10.2973/odp.proc.sr.180.171.2001
    Publication Date: 2024-01-09
    Description: Low molecular weight hydrocarbon (LMWH) distributions were examined in sediments from Sites 1109 and 1115 in the western Woodlark Basin using purge-trap thermal adsorption/desorption gas analysis. A number of different hydrocarbon components 〉C1, which were not detected during shipboard gas analysis, were detected at both sites using the purge-trap procedure. Concentrations of ethane, propane, and butane remained relatively low (〈100 pmol/g) throughout Site 1109 and had no consistent trend with depth. In contrast, the longer-chain components increased in concentration with depth. Hexane concentrations rose to 716 pmol/g at the base of the site with a concomitant increase in both 2-methyl- and 3-methylpentane. At Site 1115, concentrations of ethane, propane, butane, and isobutylene + 1-butene remained low (〈60 pmol/g) throughout the site and again had no consistent trend with depth. 2-Methylpentane, 3-methylpentane, and hexane concentrations had a subsurface maximum that coincided with sediments containing abundant plant-rich material. The LMWH downhole profiles plus low in situ temperatures suggest that the LMWH components were formed in situ by low-temperature biological processes. Purge-trap analysis has indicated the presence of some unexpected deep low-temperature bacterial reactions, which demonstrates that further analysis of LMWH may provide valuable information at future Ocean Drilling Program sites.
    Keywords: Ocean Drilling Program; ODP
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 2
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    PANGAEA
    In:  Supplement to: Cragg, Barry A; Parkes, R John; Fry, J C; Herbert, R A; Wimpenny, Julian W T; Getliff, J M (1990): Bacterial biomass and activity profiles within deep sediment layers. In: Suess, E; von Huene, R; et al. (eds.), Proceedings of the Ocean Drilling Program, Scientific Results, College Station, TX (Ocean Drilling Program), 112, 607-619, https://doi.org/10.2973/odp.proc.sr.112.161.1990
    Publication Date: 2024-01-09
    Description: Microbiological examination of sediment cores from the Peru margin (Leg 112) has produced highly significant results: (1) bacteria were present at all sediment depths sampled to 80 meters below seafloor (mbsf); (2) Bacteria were observed in the process of cell division at all but one depth to 80 mbsf; (3) Viable bacteria of different types (heterotrophs, sulfate-reducing, nitrate-reducing, methanogenic, and hydrocarbon oxidizing) have been isolated from many of the sediment samples, including those at 80 mbsf; and (4) Potential activity rates for sulfate reduction and methanogenesis have been determined and are consistent with the distribution of the respective bacteria and in-situ chemical profiles within the sediment. In combination, these results unequivocally demonstrate the presence and activity of bacteria within deep sediment layers.
    Keywords: 112-680C; 112-681C; Bacteria; Bacteria, aerobic; Bacteria, anaerobic; DEPTH, sediment/rock; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Event label; Joides Resolution; Leg112; Ocean Drilling Program; ODP; Ratio; Sample code/label; South Pacific Ocean
    Type: Dataset
    Format: text/tab-separated-values, 234 data points
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  • 3
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    PANGAEA
    In:  Supplement to: Cragg, Barry A; Harvey, S M; Fry, J C; Herbert, R A; Parkes, R John (1992): Bacterial biomass and activity in the deep sediment layers of the Japan Sea, Hole 798B. In: Pisciotto, KA; Ingle, JCJr.; von Breymann, MT; Barron, J; et al. (eds.), Proceedings of the Ocean Drilling Program, Scientific Results, College Station, TX (Ocean Drilling Program), 127/128(1), 761-776, https://doi.org/10.2973/odp.proc.sr.127128-1.184.1992
    Publication Date: 2024-01-09
    Description: Sediment whole-round cores from a dedicated hole (798B) were obtained for detailed microbiological analysis, down to 518 m below the seafloor (mbsf). These sediments have characteristic bacterial profiles in the top 6 mbsf, with high but rapidly decreasing bacterial populations (total and dividing bacteria, and concentrations of different types of viable heterotrophic bacteria) and potential bacterial activities. Rates of thymidine incorporation into bacterial DNA and anaerobic sulfate reduction are high in the surface sediments and decrease rapidly down to 3 mbsf. Methanogenesis from CO2/H2 peaks below the maximum in sulfate reduction and although it decreases markedly down the core, is present at low rates at all but one depth. Consistent with these activities is the removal of pore-water sulfate, methane gas production, and accumulation of reduced sulfide species. Rates of decrease in bacterial populations slow down below 6 mbsf, and there are some distinct increases in bacterial populations and activities that continue over considerable depth intervals. These include a large and significant increase in total heterotrophic bacteria below 375 mbsf, which corresponds to an increase in the total bacterial population, bacterial viability, a small increase in potential rates of sulfate reduction, and the presence of thermogenic methane and other gases. Bacterial distributions seem to be controlled by the availability of terminal electron acceptors (e.g., sulfate), the bioavailability of organic carbon (which may be related to the dark/light bands within the sediment), and biological and geothermal methane production. Significant bacterial populations are present even in the deepest samples (518 mbsf) and hence it seems likely that bacteria may continue to be present and active much deeper than the sediments studied here. These results confirm and extend our previous results of bacterial activity within deep sediments of the Peru Margin from Leg 112, and to our knowledge this is the first comprehensive report of the presence of active bacterial populations from the sediment surface to in excess of 500 mbsf and sediments 〉 4 m.y. old.
    Keywords: 128-798B; Acridine Orange Direct Counting (AODC); Bacteria, acetogens; Bacteria, aerobic ammonifers; Bacteria, anaerobic; Bacteria, anaerobic ammonifers; Bacteria, cells; Bacteria, heterotrophic; Bacteria, nitrate-reducing; Bacteria, sulfate reducing; Depth, bottom/max; DEPTH, sediment/rock; Depth, top/min; DRILL; Drilling/drill rig; Japan Sea; Joides Resolution; Leg128; Ocean Drilling Program; ODP
    Type: Dataset
    Format: text/tab-separated-values, 262 data points
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  • 4
    Publication Date: 2024-01-09
    Keywords: 180-1109B; 180-1109C; 2-Methylpentane per unit sediment mass; 3-Methylpentane per unit sediment mass; Butane; DEPTH, sediment/rock; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Ethane; Event label; Gas chromatograhpy after purge-trap gas extraction; Hexane; Isobutane; Isobutylene per unit sediment mass; Isopentane per unit sediment mass; Joides Resolution; Leg180; Ocean Drilling Program; ODP; Propane; Sample code/label; Solomon Sea; trans-2-Butene per unit sediment mass
    Type: Dataset
    Format: text/tab-separated-values, 77 data points
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  • 5
    Publication Date: 2024-01-09
    Keywords: 1,3-Butadiene per unit sediment mass; 180-1115A; 180-1115B; 180-1115C; 2,2-Dimethylbutane per unit sediment mass; 2-Methylpentane per unit sediment mass; 3-Methylpentane per unit sediment mass; Butane; cis-2-Butene per unit sediment mass; DEPTH, sediment/rock; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Ethane; Event label; Gas chromatograhpy after purge-trap gas extraction; Hexane; Isobutane per unit sediment mass; Isobutylene per unit sediment mass; Joides Resolution; Leg180; Ocean Drilling Program; ODP; Pentane; Propane; Sample code/label; Solomon Sea
    Type: Dataset
    Format: text/tab-separated-values, 117 data points
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  • 6
    Publication Date: 2024-01-09
    Keywords: 190-1173A; Carbon, organic, total; Carbon, total; Carbon dioxide yield, S3 per unit sediment mass; DEPTH, sediment/rock; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Hydrocarbon yield, S1 per unit sediment mass; Hydrocarbon yield, S2 per unit sediment mass; Hydrogen index, mass HC, per unit mass total organic carbon; Joides Resolution; Leg190; Ocean Drilling Program; ODP; Oxygen index, mass CO2, per unit mass total organic carbon; Philippine Sea; Pyrolysis temperature maximum; Rock eval pyrolysis (Behar et al., 2001); Sample code/label; Sulfur, total
    Type: Dataset
    Format: text/tab-separated-values, 100 data points
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  • 7
    Publication Date: 2024-01-09
    Keywords: 190-1177A; Carbon, organic, total; Carbon, total; Carbon dioxide yield, S3 per unit sediment mass; DEPTH, sediment/rock; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Hydrocarbon yield, S1 per unit sediment mass; Hydrocarbon yield, S2 per unit sediment mass; Hydrogen index, mass HC, per unit mass total organic carbon; Joides Resolution; Leg190; Ocean Drilling Program; ODP; Oxygen index, mass CO2, per unit mass total organic carbon; Philippine Sea; Pyrolysis temperature maximum; Rock eval pyrolysis (Behar et al., 2001); Sample code/label; Sulfur, total
    Type: Dataset
    Format: text/tab-separated-values, 110 data points
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  • 8
    Publication Date: 2024-01-09
    Keywords: 190-1174; Carbon, organic, total; Carbon, total; Carbon dioxide yield, S3 per unit sediment mass; COMPCORE; Composite Core; DEPTH, sediment/rock; DSDP/ODP/IODP sample designation; Hydrocarbon yield, S1 per unit sediment mass; Hydrocarbon yield, S2 per unit sediment mass; Hydrogen index, mass HC, per unit mass total organic carbon; Joides Resolution; Leg190; Ocean Drilling Program; ODP; Oxygen index, mass CO2, per unit mass total organic carbon; Philippine Sea; Pyrolysis temperature maximum; Rock eval pyrolysis (Behar et al., 2001); Sample code/label; Sulfur, total
    Type: Dataset
    Format: text/tab-separated-values, 150 data points
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  • 9
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    PANGAEA
    In:  Supplement to: Horsfield, Brian; Schenk, H J; Zink, Klaus-Gerhard; Ondrak, Robert; Dieckmann, V; Kallmeyer, Jens; Mangelsdorf, Kai; di Primio, Rolando; Wilkes, Heinz; Parkes, R John; Cragg, Barry A (2006): Living microbial ecosystems within the active zone of catagenesis: Implications for feeding the deep biosphere. Earth and Planetary Science Letters, 246(1-2), 55-69, https://doi.org/10.1016/j.epsl.2006.03.040
    Publication Date: 2024-01-09
    Description: Earth's largest reactive carbon pool, marine sedimentary organic matter, becomes increasingly recalcitrant during burial, making it almost inaccessible as a substrate for microorganisms, and thereby limiting metabolic activity in the deep biosphere. Because elevated temperature acting over geological time leads to the massive thermal breakdown of the organic matter into volatiles, including petroleum, the question arises whether microorganisms can directly utilize these maturation products as a substrate. While migrated thermogenic fluids are known to sustain microbial consortia in shallow sediments, an in situ coupling of abiotic generation and microbial utilization has not been demonstrated. Here we show, using a combination of basin modelling, kinetic modelling, geomicrobiology and biogeochemistry, that microorganisms inhabit the active generation zone in the Nankai Trough, offshore Japan. Three sites from ODP Leg 190 have been evaluated, namely 1173, 1174 and 1177, drilled in nearly undeformed Quaternary and Tertiary sedimentary sequences seaward of the Nankai Trough itself. Paleotemperatures were reconstructed based on subsidence profiles, compaction modelling, present-day heat flow, downhole temperature measurements and organic maturity parameters. Today's heat flow distribution can be considered mainly conductive, and is extremely high in places, reaching 180 mW/m**2. The kinetic parameters describing total hydrocarbon generation, determined by laboratory pyrolysis experiments, were utilized by the model in order to predict the timing of generation in time and space. The model predicts that the onset of present day generation lies between 300 and 500 m below sea floor (5100-5300 m below mean sea level), depending on well location. In the case of Site 1174, 5-10% conversion has taken place by a present day temperature of ca. 85 °C. Predictions were largely validated by on-site hydrocarbon gas measurements. Viable organisms in the same depth range have been proven using 14C-radiolabelled substrates for methanogenesis, bacterial cell counts and intact phospholipids. Altogether, these results point to an overlap of abiotic thermal degradation reactions going on in the same part of the sedimentary column as where a deep biosphere exists. The organic matter preserved in Nankai Trough sediments is of the type that generates putative feedstocks for microbial activity, namely oxygenated compounds and hydrocarbons. Furthermore, the rates of thermal degradation calculated from the kinetic model closely resemble rates of respiration and electron donor consumption independently measured in other deep biosphere environments. We deduce that abiotically driven degradation reactions have provided substrates for microbial activity in deep sediments at this convergent continental margin.
    Keywords: 190-1173A; 190-1174; 190-1177A; COMPCORE; Composite Core; DRILL; Drilling/drill rig; Joides Resolution; Leg190; Ocean Drilling Program; ODP; Philippine Sea
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 10
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 31 (1985), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract The bacterial fatty acids of three strains of Desulfobulbus grown on propionate were analysed. The fatty acid profiles of all three strains were very similar, being dominated by C17: 1Δ11, which represented approx. 50% of the total fatty acids, and with major contributions from C15:0, C16:0, C15:1, C18:1Δ11 and C14:0. This data indicates that all three strains are closely related despite their different habitats (1 marine and 2 freshwater) and that C17:1Δ11 is a biomarker for Desulfobulbus.
    Type of Medium: Electronic Resource
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