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  • 1
    Publication Date: 2024-03-27
    Description: To choose the treatment temperatures for an indoor mesocosm temperature experiment at the ICBM in Wilhelmshaven (https://doi.pangaea.de/10.1594/PANGAEA.961155), a thermal performance curve assay was performed from the 8th of March until the 16th of March. It was started one day after filling the mesocosms with seawater from Helgoland Roads (https://deims.org/1e96ef9b-0915-4661-849f-b3a72f5aa9b1) by randomly spreading pooled sample water in 50 ml culture flasks across ten temperatures (3 °C to 30 °C in 3 °C steps) in triplicates. Their fluorescence (395/680 Excitation/Emission) was measured daily using a SYNERGY H1 microplate reader (BioTek, Winooski, Vermont, USA).
    Keywords: Blank; Bottle number; Changing Earth – Sustaining our Future; Chlorophyll a; community composition; DATE/TIME; Day of experiment; Diaphragm pump; coupled with pipe [covered with a 200 µm net]; Event label; HE593; HE593_SOT22; Heincke; Helgoland; Helmholtz_ChangingEarth; incubation experiment; Microplate reader, BioTek, Synergy H1; North Sea; phytoplankton; plankton community; Replicate; SOT22; spring bloom; thermal performance curve; Treatment: temperature; Type of study
    Type: Dataset
    Format: text/tab-separated-values, 1890 data points
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  • 2
    Publication Date: 2024-03-27
    Description: To investigate the effect of temperature on a North Sea spring bloom community, we performed an incubation experiment in the mesocosm facility of the Institute for Chemistry and Biology of the Marine Environment (ICBM) in Wilhelmshaven. The plankton community was sampled from the long-term ecological research station Helgoland Roads (https://deims.org/1e96ef9b-0915-4661-849f-b3a72f5aa9b1) on the 6ᵗʰ of March, 2022. Collection of the surface community was conducted from the RV Heincke with a pipe covered with a 200 µm net that was attached to a diaphragm pump. The month-long incubation was started on the 7ᵗʰ of March in twelve indoor mesocosms, the Planktotrons (Gall et al., 2017). We chose three temperatures along the ascending part of the thermal performance curve (TPC) of the in situ community: the minimum temperature for positive growth (6°C, also the field temperature), the middle between the minimum and the optimum temperature (12 °C), and the optimum temperature for growth (18 °C). Ramping up the temperatures was conducted by 1 °C per day until the treatment temperatures were reached, resulting in a ramp phase (first twelve days) and a constant temperature phase. This dataset comprises all data collected within the experiment. Temperature, oxygen, pH, salinity, and in vivo fluorescence were measured daily at 10 am. Samples for dissolved nutrients (nitrate, nitrite, phosphate, silicate), chlorophyll a, DNA, particulate nutrients (biogenic silica, particulate organic carbon/nitrogen/phosphorus), as well as flow cytometric counts of bacteria (stained) and the unstained community were sampled every third day at the same time. The mesocosm water was generally filtered over a 200 µm mesh before sampling to exclude mesozooplankton. However, due to the appearance of large Phaeocystis colonies, additional samples without pre-filtration were taken for particulate organic carbon, nitrogen, phosphorus, and chlorophyll a starting on incubation day 15. PAR, total nitrogen and phosphorus as well as total alkalinity were measured at the start, in the middle, and at the end of the incubation. Samples for Mesozooplankton enumeration were taken and plankton species identified at the end of the experiment. All analysis scripts can be found on github (https://github.com/AntoniaAhme/TopTrons22MesocosmIncubation). The sequence data are available at the European Nucleotide Archive (ENA).
    Keywords: Alkalinity, total; Bacteria; Bicarbonate ion; Biogenic silica; calculated from carbonate chemistry using the CO2Sys Excel sheet (Pierrot, Lewis & Wallace, 2006); Carbon, inorganic, dissolved; Carbon, organic, particulate; Carbon and hydrogen and nitrogen (CHN) analyzer, Thermo Scientific, FlashEA 1112; Carbon dioxide, dissolved; Carbon dioxide, partial pressure; Carbon trioxide; Cell Sorter, BD Biosciences, BD Influx; Changing Earth – Sustaining our Future; Chlorophyll a; community composition; Conductivity and oxygen sensor, WTW, ConOx-1.5; measured with Handheld meter, WTW, Multi 3630 IDS; Conductivity probe, WTW, TetraCon 925/C; measured with Handheld meter, WTW, Multi 3630 IDS; Cryptophytes; Cyanobacteria; Date/time end, experiment; Date/time start, experiment; Diaphragm pump; coupled with pipe [covered with a 200 µm net]; Elemental analyzer, EuroVector, EA 3000; Event label; Field experiment; Flow cytometer, BD Biosciences, BD Accuri C6; Fluorescence, in vivo; Handheld Fluorometer, Turner Designs, AquaFluor; HE593; HE593_SOT22; Heincke; Helgoland; Helmholtz_ChangingEarth; Incubation duration; incubation experiment; Measured according to Grasshoeff et al. (2009); Measured according to Wetzel and Likens (2003); mesocosm experiment; Mesocosm label; mesozooplankton; Mesozooplankton; Method comment; Microplate reader, BioTek, Synergy H1; Nitrate and Nitrite; Nitrogen, organic, particulate; Nitrogen, total dissolved; North Sea; Oxygen; Oxygen sensor, PreSens Precision Sensing GmbH, OXYBase WR-RS485-L5; pH; Phosphate; Phosphorus, organic, particulate; Phosphorus, total dissolved; phytoplankton; Phytoplankton, total; Plankton; plankton community; Planktotron; Pressure resistant ORP electrode, WTW, SensoLyt ORP 900-P; measured with Handheld meter, WTW, Multi 3630 IDS; Radiation, photosynthetically active; Replicate; Salinity; Sample code/label; Segmented Flow Analyzer, SEAL Analytical, SEAL AA500; Silicate; SOT22; Species; spring bloom; Stereo microscope, Leica Microsystems, S8 APO; stoichiometry; Temperature, water; Temperature probe, TC Mess- und Regeltechnik GmbH, PT100; measured with Temperature controller, Temperature Control GmbH, custom-built; temperature stress; thermal performance curve; Titration analyzer, Schott Instruments, TitroLine alpha plus; Treatment: temperature; Treatment: temperature description; Type of study
    Type: Dataset
    Format: text/tab-separated-values, 8288 data points
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  • 3
    Publication Date: 2024-04-16
    Description: Phototrophic protists are a fundamental component of the world's oceans by serving as the primary source of energy, oxygen, and organic nutrients for the entire ecosystem. Due to the high thermal seasonality of their habitat, temperate protists could harbour many well-adapted species that tolerate ocean warming. However, these species may not sustain ecosystem functions equally well. To address these uncertainties, we conducted a 30-day mesocosm experiment to investigate how moderate (12C) and substantial (18C) warming compared to ambient conditions (6C) affect the composition (18S rRNA metabarcoding) and ecosystem functions (biomass, gross oxygen productivity, nutritional quality – C:N and C:P ratio) of a North Sea spring bloom community. Our results revealed warming-driven shifts in dominant protist groups, with haptophytes thriving at 12 C and diatoms at 18 C. Species responses primarily depended on the species' thermal traits, with indirect temperature effects on grazing being less relevant and phosphorus acting as a critical modulator. The species Phaeocystis globosa showed highest biomass on low phosphate concentrations and relatively increased in some replicates of both warming treatments. In line with this, the C:P ratio varied more with the presence of P. globosa than with temperature. Examining further ecosystem responses under warming, our study revealed lowered gross oxygen productivity but increased biomass accumulation whereas the C:N ratio remained unaltered. Although North Sea species exhibited resilience to elevated temperatures, a diminished functional similarity and heightened compositional variability indicate potential ecosystem repercussions for higher trophic levels. In conclusion, our research stresses the multifaceted nature of temperature effects on protist communities, emphasising the need for a holistic understanding that encompasses trait-based responses, indirect effects, and functional dynamics in the face of exacerbating temperature changes.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 4
    Publication Date: 2013-10-01
    Print ISSN: 0378-1127
    Electronic ISSN: 1872-7042
    Topics: Biology , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by Elsevier
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