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  • 1
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 49 (1988), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract A Rhodococcus strain possessing a capsule, but no fimbriae, was isolated from pond water by adsorption to Teflon. The strain was hydrophobic, as shown by partitioning between dodecane and buffer. A high emulsifying activity was found in the culture supernatant, from which a polysaccharide was isolated. This contained glucuronic acid, glucose, galactose and rhamnose in a molecular ratio of 1:1:1:2. One acetate residue was found per repeating unit. The polysaccharide molecules formed clusters, which disaggregated on the addition of sodium dodecyl sulphate (SDS). Rabbit antibodies against this polysaccharide aggregated the bacterial cells. Thus, it can be concluded that this polysaccharide at least contributes to the cell surface hydrophobicity, thereby mediating in the adsorption of cells to inert hydrophobic surfaces.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Aerobic and anaerobic cultivation techniques, 16S rDNA-based phylogeny, and fluorescent in situ hybridization were used to describe the phylogenetic diversity and physiological versatility of lotic microbial aggregates (‘river snow’) obtained from the river Elbe. In the course of the year the ‘river snow’ community changed. It was characterized by a great bacterial diversity in spring, the predominant occurrence of algae in summer and reduction of the total bacterial cell count in autumn and winter. In all ‘river snow’ samples, more than 70% of the bacteria counted with the general DNA stain DAPI also hybridized with the Bacteria-specific probe EUB338. In situ analysis of the bacterial ‘river snow’ community with a comprehensive suite of specific rRNA-targeted probes revealed population dynamics to be governed by seasonal factors. During all seasons, β-Proteobacteria constituted the numerically most important bacterial group forming up to 54% of the total cell counts. In contrast to this, the relative abundance of other major bacterial lineages ranged from 2% for the order Planctomycetales to 36% for Cytophaga-Flavobacteria. Cultivation of ‘river snow’ under aerobic and anaerobic conditions with a variety of different media resulted in the isolation of 40 new bacterial strains. Phenotypic and phylogenetic analyses revealed these new strains to be mostly unknown organisms affiliated to different bacterial phyla. Application of newly developed specific oligonucleotide probes proved the cultivated bacteria, including clostridia and the numerically abundant β-Proteobacteria, as relevant in situ members of the ‘river snow’ community.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: A comprehensive panel of ten 16S rRNA targeted oligonucleotides specific for mesophilic sulfate-reducing bacteria (SRB) within the δ-subclass of Proteobacteria was developed as a diagnostic tool and evaluated for its specificity and in situ applicability. Five probes (DSD131, DSBO224, DSV407, DSR651, DSS658) are specific on genus level and five probes identify distinct phylogenetic subbranches within the families Desulfobacteriaceae (DSMA488, DSB985) and Desulfovibrionaceae (DSV214, DSV698, DSV1292). All oligonucleotides were checked for their specificity by computer aided comparative sequence analysis. For in situ application optimal stringency conditions were adjusted for each fluorescence-labelled probe performing whole cell hybridizations using target and non-target organisms. Activated sludge flocs from different stages within the aeration tank of a large municipal wastewater treatment plant were examined by in situ hybridizations with the indocarbocyanine- (Cy3-) labelled SRB-specific probes. The relative abundance and the spatial organization of single SRB were monitored with epifluorescence and confocal laser scanning microscopy. Individual sulfate-reducing cells could be visualized and the number of cells ranged from 0.5 to 8% of the total cell counts within all stages of the activated sludge process and the final clarifier. Cells yielding strong fluorescence signals after hybridization with the newly developed probes were not restricted to anoxic and anaerobic compartments, but were also clearly detectable in the aeration zones of the treatment plant.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 24 (1997), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The development of stream biofilms was studied using a rotating annular biofilm reactor system for cultivation and confocal laser scanning microscopy for structural examination. Biofilms were generated by feeding the reactor with raw river water as inoculum and a sole nutrient source. The biofilm developed during 56 days from microcolonies via a thin patchy film into a ridged structure. The ridges were oriented parallel to the direction of flow. The parallel ridges varied from a few microns up to 500 μm thick and consisted of cellular and non-cellular material. The architecture of the film was in contrast to previous views of a homogeneous biofilm structure and more recent biofilm models with channels and inverted biomass distribution. The difference may be attributed to the presence and co-adsorption of humic and detrital material in natural lotic systems. This material building the ridges supplied an increased surface area for colonization and may serve as an additional source of nutrients. The biofilms on the removable slides showed a thickness gradient across the width and the length of the slides which may be caused by the flow pattern of the water inside the reactor. By using a live/dead fluorescent probe the population heterogeneity of the biofilm was demonstrated in space and time. In addition, the dominance of certain bacteria and their extracellular polymeric products was examined using lectin binding analyses. The rotating annular biofilm reactor may be a useful tool for morphological studies of complex microbial films, particularly those developing under turbulent flow regimes which are typical for aqueous environmental ecosystems.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Applied microbiology and biotechnology 32 (1990), S. 518-520 
    ISSN: 1432-0614
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary A surfactant was purified from a Pseudomonas fluorescens strain isolated while screening for bacteria with hydrophobic surfaces. The surfactant was separated from the isolated extract by the use of thin-layer chromatography and detected as a ninhydrin-negative, 4,4′-tetramethyl-diamino-diphenylmethane-positive spot. HPLC of the purified substance resulted in one single peak. The amino acid composition was identical to viscosin, a peptidolipid. Fast-atom bombardment mass spectrometry showed a mass peak at m/z 1126. Surface tension measurements revealed a value of 26.5 mN/m and a critical micelle concentration of 0.15 mg/ml.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Applied microbiology and biotechnology 32 (1990), S. 521-525 
    ISSN: 1432-0614
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary The culture supernatants of 126 bacterial strains isolated during screening for hydrophobic cell surfaces, were tested for the production of emulsifying agents. Forty-eight strains were found to produce effective emulsion-stabilizing substances during growth on glucose. The most effective emulsifying agents were isolated and could be divided into two chemical groups. The first group was separated from the isolated extracts by the use of thin-layer chromatography and detected as ninhydrin-negative, 4,4'-tetramethyldiamino-diphenylmethane-positive spots. The amino acid composition indicated surfactin and iturin, produced by one Bacillus species, and viscosin, produced by a Pseudomonas species. The second group was identified as polymeric substances. The chemical characterization of five polymers showed polysaccharides that were able to stabilize emulsions. From these the neutral and charged monosaccharides were determined qualitatively. The constituents of the five isolated polysaccharides were: strain 5, glucose, strain 17, rhamnose, glucose, glucuronic acid; strain 33, rhamnose, galactose, glucose. glucuronic acid; strain 113, fucose, galactose, glucose, galacturonic acid, glucosamine; strain 259, one unknown compound, rhamnose, galactose, glucuronic acid.
    Type of Medium: Electronic Resource
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  • 7
    Publication Date: 2021-12-06
    Description: Periphytic biofilms are the major resource for many herbivorous invertebrates in both marine and freshwater benthos. They are of crucial importance for benthic food webs, substrate stability, and biogeochemical processes in littoral zones. While the importance of invertebrate grazing on biofilms has been studied extensively using natural, mixed algal communities grown on artificial substrates, there is so far no method available to create defined periphyton communities for these grazing studies. The reason for this is that many benthic algae interact with co-occurring species within the extracellular polymeric substances (EPSs) that form the nonorganismic part of the biofilm. Here, we present a novel method that allows the manufacturing of defined monoculture and multispecies biofilms by using an alginate polymer as artificial EPS structure, into which algal cultures can be embedded. Using confocal laser scanning microscopy, we show that alginate effectively embeds various algal taxa in an EPS matrix that is very similar to natural biofilms. In a grazing experiment, we demonstrate that several common freshwater herbivorous invertebrates can graze these alginate biofilms efficiently. As the method is easy to handle, it allows for highly controlled feeding experiments with benthic herbivores to assess, for example, the role of algal biodiversity on the efficiency of top-down control, the effects of environmental drivers such as nutrients, salinity, or seawater acidification on biofilm community structure, and the impacts of herbivory in benthic communities.
    Keywords: 577.2 ; benthic ecology ; biofilm pads
    Language: English
    Type: map
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  • 8
    Publication Date: 2010-06-21
    Description: To understand mechanisms of tufa biofilm calcification, selected karstwater stream stromatolites in Germany have been investigated with regard to their hydrochemistry, biofilm community, exopolymers, physicochemical microgradients, calcification pattern and lamination. In stream waters, CO2 degassing drives the increase in calcite saturation to maximum values of approximately 10-fold, independent from the initial Ca2+/alkalinity ratio. For the cyanobacteria of tufa biofilms, a culture-independent molecular approach showed that microscopy of resin-embedded biofilm thin sections underestimated the actual diversity of cyanobacteria, i.e. the six cyanobacteria morphotypes were opposed to nine different lineages of the 16S rDNA phylogeny. The same morphotype may even represent two genetically distant cyanobacteria and the closest relatives of tufa biofilm cyanobacteria may be from quite different habitats. Diatom diversity was even higher in the biofilm at the studied exemplar site than that of the cyanobacteria, i.e. 13 diatom species opposed to 9 cyanobacterial lineages. The non-phototrophic prokaryotic biofilm community is clearly different from the soil-derived community of the stream waters, and largely composed of flavobacteria, firmicutes, proteobacteria and actinobacteria. The exopolymeric biofilm matrix can be divided into three structural domains by fluorescence lectin-binding analysis. Seasonal and spatial variability of these structural EPS domains is low in the investigated streams. As indicated by microsensor data, biofilm photosynthesis is the driving mechanism in tufa stromatolite formation. However, photosynthesis-induced biofilm calcification accounts for only 10-20% of the total Ca2+ loss in the streams, and occurs in parallel to inorganic precipitation driven by CO2-degassing within the water column and on biofilm-free surfaces. Annual stromatolite laminae reflect seasonal changes in temperature and light supply. The stable carbon isotope composition of the laminae is not affected by photosynthesis-induced microgradients, but mirrors that of the bulk water body only reflecting climate fluctuations. Tufa stromatolites with their cyanobacterial-photosynthesis-related calcification fabrics form an analogue to porostromate cyanobacterial stromatolites in fossil settings high in CaCO3 mineral supersaturation but comparatively low in dissolved inorganic carbon. Here, the sum-effect of heterotrophic exopolymer-degradation and secondary Ca2+-release rather decreases calcite saturation, contrary to settings high in dissolved inorganic carbon such as soda lakes.
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  • 9
    Publication Date: 2013-03-18
    Print ISSN: 0013-936X
    Electronic ISSN: 1520-5851
    Topics: Chemistry and Pharmacology , Energy, Environment Protection, Nuclear Power Engineering
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  • 10
    Publication Date: 2016-10-01
    Print ISSN: 0043-1354
    Electronic ISSN: 1879-2448
    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Published by Elsevier
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