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  • 1
    ISSN: 1520-4995
    Source: ACS Legacy Archives
    Topics: Biology , Chemistry and Pharmacology
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  • 2
    ISSN: 1520-4995
    Source: ACS Legacy Archives
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 140 (1984), S. 265-270 
    ISSN: 1432-072X
    Keywords: EcoRI ; EcoRI-DNA complexes ; EcoRI* activity ; Recognition sites ; Frequency of binding ; Electron microscopy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Electron microscopy of negatively stained isolated restriction enzyme EcoRI revealed particle projections with triangular or square outlines, indicating that the enzyme, in its tetrameric state, is tetrahedron-like. The two dimers making up the tetramer appear to be arranged in two planes orthogonal to each other. Complexes formed by EcoRI with the plasmids pBR322 or pGW10 were investigated by electron microscopic spreading techniques. In the presence of Mg2+, EcoRI was bound to the DNA molecules to form pearl necklace-like aggregates. The number of bound EcoRI particles was much higher as the sum of EcoRI-and 5′..AATT..3′ sites (with exceptions, the 5′..AATT..3′ sites may function as one type of EcoRI* sites) along the DNAs, indicating unspecific binding. In the absence of Mg2+, EcoRI was bound to the DNA only at the recognition site for EcoRI and the sites where the tetranucleotide sequence 5′..AATT..3′ was present. A direct correlation of the local concentrations of the bases A and T within the flanking sequences of the binding sites with the frequency of EcoRI to the DNA was observed. Dimers and tetramers of the enzyme was found to bind to the DNA. Tetramers occasionally exhibited two binding sites for DNA as indicated by the observation of DNA loops originating at the sites of bound tetrameric EcoRI particles.
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  • 4
    ISSN: 1432-072X
    Keywords: Mycoplana ; LPS ; 2,3-Diamino-glucose ; 4-Oxo-14:0 ; DOC-PAGE ; Phylogeny ; Pseudomonas vesicularis ; Agrobacterium tumefaciens
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Lipopolysaccharides (LPS), isolated from four Mycoplana species, i.e. the type strains of M. bullata, M. segnis, M. ramosa and M. dimorpha, were characterized onto their chemical composition and their respective lipid A-types. Those of M. bullata and M. segnis showed on DOC-PAGE an R-type character and had lipid A's of the Lipid ADAG-type which exclusively contained 2,3-diamino-2,3-dideoxy-d-glucose as lipid A sugar. LPS's of M. ramosa and M. dimorpha showed, although only weakly expressed, ladder-like patterns on DOC-PAGE indicating some S-type LPS's and lipid A of the d-glucosamine type (Lipid AGlcN). M. bullata LPS contained mannose and glucose in major amounts and additionally l-glycero-d-mannoheptose, whereas M. segnis LPS was composed of rhamnose, mannose and glucose together with both, d-glycero-d-manno- and l-glycero-d-manno-heptoses in a molar ratio of 1:2. All LPS's contained 2-keto-3-deoxy-octonic acid (Kdo), phosphate and an unidentified acidic component “X”. In addition to “X”, M. segnis LPS contained glucuronic and galacturonic acids, whereas M. ramosa LPS contained only galacturonic acid. Acetic acid hydrolysis of the LPS resulted in splitting off lipid A moieties, very rich in 3-hydroxy fatty acids, in particular in 3-OH-12:0 (in Lipid ADAG), or in 3-OH-14:0 (in Lipid AGlcN). Analysis of the 3-acyloxyacyl residues revealed major amounts of amide-linked 3-OH(3-OH-13:0)12:0 in lipid A of M. bullata and 3-OH(12:0)12:0 in lipid A of M. segnis. The rare 4-oxo-myristic acid (4-oxo-14:0) was observed only in M. bullata LPS, where it is ester-linked. Amide linked diesters could not be traced in M. ramosa and M. dimorpha. All four lipid A's lacked erster-bound acyloxyacyl residues.
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  • 5
    ISSN: 1432-072X
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary 1. The isolation and chemical characterization of the lipopolysaccharides (O-antigens) of 12 strains of the gram-negative photosynthetic bacterium Rhodopseudomonas palustris is described. Lipopolysaccharides (LPS) were extractable with phenol/water, however, the bulk of the LPS of all strains remained in the phenol phase and only trace amounts were found in the aqueous layer. The LPS was also extractable by a phenol/chloroform/petroleum ether mixture (PCP-method), recommended for lipophilic glycolipids. Neither incubation of living bacteria with EDTA nor with NaCl liberated appreciable amounts of LPS-protein-lipid conjugates from the cells. 2. All strains investigated were found to have galactose, mannose, heptose, 2-keto-3-deoxyoctonate (KDO), glucosamine, 6-deoxy-glucosamine (quinovosamine) and a recently identified sugar, a 2,3-diamino-2,3-dideoxyhexose, as common LPS constituents. The presence of additional sugars allowed the classification of the strains into three distinct chemotypes. Chemotype I contains 4-O-methyl-D-xylose, and several non-identified amphoteric amino sugars. Chemotype II contains 4-O-methyl-D-xylose, 3-O-methyl-6-deoxy-D-talose, 6-deoxy-talose, xylose and again some unidentified amphoteric amino sugars, which were different from those of chemotype I. In chemotype III xylose, glucose, rhamnose, galactosamine and 6-O-methyl-glucosamine were identified. The main fatty acid in the high molecular weight material from the phenol phase of phenol/water extracts of all strains is β-hydroxymyristic acid. In addition in all strains β-hydroxypalmitic, palmitic and stearic acids were found. It has still to be proven that all these fatty acids are LPS constituents. 3. Like enteric LPS the LPS of R. palustris can be split by mild acid hydrolysis in a lipid portion (lipid A) and the degraded polysaccharide. But contrary to enteric lipid A, the lipid A of R. palustris does not contain glucosamine, but has the 2,3-diamino-hexose as the only amino sugar constituent. The possible occurrence of a common R-core and the question if repeating units exist in the O-specific chains of R. palustris LPS are discussed. 4. In two strains small amounts of additional LPS, which differ in their chemical composition from the respective LPS of the phenol phase, were isolated from the aqueous phase.
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  • 6
    ISSN: 1432-072X
    Keywords: Rhodopseudomonas palustris ; O-Antigens ; Serology ; Lipopolysaccharides
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Description / Table of Contents: Zusammenfassung Die isolierten O-Antigen (Lipopolysaccharide) aus 12 Rhodopseudomonas palustris-Stämmen konnten drei verschiedenen Serotypen zugeordnet werden. Diese decken sich mit der kürzlich erarbeiteten Chemotypisierung dieser O-Antigene. Im passiven Hämagglutinationstest, der mit den Lipopolysacchariden der Stämme 2/2, K/1 (Chemotyp I), sowie 8/1, 1e5 (Chemotyp II) und 11/1, 15, 1a1, 42 (Chemotyp III) und den entsprechenden Antiseren gegen diese Stämme ausgeführt wurde, zeigten die O-Antigene nur innerhalb eines Chemotyps Kreuzreaktionen. Zwischen Lipopolysacchariden verschiedener Chemotypen wurden in keinem Fall Kreuzreaktionen beobachtet. Entsprechende Ergebnisse wurden durch Immunelektrophorese und im Agargel-Präcipitationstest nach Ouchterlony erhalten, bei welchen die Lipopolysaccharide der Stämme 8/1 (Chemotyp II) und 11/1 (Chemotyp III) mit den homologen und den gegen die übrigen Stämme gerichteten heterologen Antiseren getestet wurden. Durch Kreuzabsorptionen der Antiseren wurde für die dem Chemotyp III zugehörenden Stämme 11/1, 15 und 1a1 O-Identität nachgewiesen. Die weitgehende Parallelität von Chemo- und Serotyp hat somit nicht nur für Enterobacteriaceae, sondern auch für die taxonomisch weit entfernten Rhodospirillaceae Gültigkeit. Jedoch sind die Serotypen bzw. Chemotypen der untersuchten Stämme nicht als selbständige Taxa anzusehen. Mit Lipopolysacchariden aus anderen Rhodospirillaceae-Species (Rhodopseudomonas capsulata, Rhodopseudomonas viridis, Rhodopseudomonas gelatinosa, Rhodospirillum rubrum) wurde in keinem Fall Kreuzreaktion erhalten.
    Notes: Abstract Serological investigations carried out with isolated O-antigens (lipopolysaccharides) of 12 strains of Rhodopseudomonas palustris showed that these O-antigens can be arranged into 3 distinct serotypes. These are identical with the three chemotypes previously established. The passive hemagglutination test carried out with isolated lipopolysaccharides of the strains 2/2 and K/1 of chemotype I, strains 8/1 and 1 e5 of chemotype II and strains 11/1, 15, 1a1 and 42 of chemotype III and their respective rabbit antisera showed that crossreactions can only be observed in between the chemotypes. No cross-reactions were observed between O-antigens of different chemotypes. This result was essentially confirmed by gel-precipitation studies (according to Ouchterlony) and in immunoelectrophoresis using the alkali-treated lipopolysaccharides of strains 8/1 (chemotype II) and 11/1 (chemotype III) as test antigens and antisera against strains of chemotypes I–III. Cross absorptions carried out with strains 11/1, 15 and 1a1, all belonging to chemotype III, showed identity of their O-antigens. The earlier established rather far-reaching parallelity of chemo- and serotypes existing in Enterobacteriaceae is therefore also valid for the taxonomically remote Rhodospirillaceae. In contrast to Enterobacteriaceae the different serotypes of Rhodopseudomonas palustris are not distinct taxa. Additional studies carried out with isolated lipopolysaccharides of other species of Rhodospirillaceae (Rhodopseudomonas capsulata, viridis and gelatinosa and Rhodospirillum rubrum) failed to show any cross reactivities with the three serotypes of Rhodopseudomonas palustris.
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  • 7
    ISSN: 1432-072X
    Keywords: Rhodospirillum rubrum ; Rhodospirillum molischianum ; Rhodopila globiformis ; Lipopolysaccharide ; Lipid A ; 2,3-Diamino-glucose
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The cell wall lipopolysaccharides from three phototrophic species of the alpha1-group of Proteobacteria, Rhodospirillum rubrum, Rhodospirillum molischianum, and Rhodopila globiformis were isolated and chemically characterized. Sodium deoxycholate polyacrylamide gel electrophoresis patterns revealed that the lipopolysaccharides of all three species possess O-chains. They are composed of repeating units only in R. molischianum and R. globiformis. The presence of l-glycero-d-mannoheptose and 2-keto-3-deoxyoctonate indicated core structures in all three lipopolysaccharides. Glucosamine was found as backbone amino sugar in lipid A of R. molischianum and R. rubrum, while R. globiformis has 2,3-diaminoglucose as backbone amino sugar. The latter species also differed from the two former ones in its content of hydroxy fatty acids (3-OH-14:0, 3-OH-16:0 in R. rubrum and R. molischianum and 3-OH-14:0, 3-OH-18:0 and 3-OH-19:0 (possibly iso- or anteisobranched) in R. globiformis).
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  • 8
    ISSN: 1432-072X
    Keywords: Sphaerotilus natans ; Lipopolysaccharide ; Lipid A ; Laser desorption mass spectrometry ; DOC-PAGE ; 3-Hydroxycapric acid ; Proteobacteria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The lipopolysaccharide of Sphaerotilus natans afforded a ladder-like pattern of bands in sodium deoxycholate-polyacrylamide gel electrophoresis, indicating the presence of a S-form lipopolysaccharide. The chemical analysis showed neutral sugars (rhamnose, glucose, l-glycero-d-manno-heptose), 3-deoxy-octulosonic acid (Kdo), amino compounds (glucosamine, glucosamine phosphate, ethanolamine and ethanolamine phosphate), and phosphorus. The lipid A fraction contained saturated and unsaturated capric, lauric, and myristic acids, and 3-hydroxy capric acid (3-OH-10:0). Its chemical structure was consisting of a glucosamine disaccharide, glycosidically substituted by a phosphomonoester, and substituted at C-4′ by a pyrophosphodiester esterified with ethanolamine. The amino groups of both glucosamines are acylated by 3-hydroxy capric acids and these in turn are substituted by saturated and unsaturated capric, lauric, and myristic acids. Hydroxyl groups of the backbone disaccharide at C-3 and C-3′ were also esterified by 3-hydroxy capric acid, those at C-4 and C-6 were unsubstituted. The latter provides the attachment site for Kdo.
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  • 9
    ISSN: 1432-072X
    Keywords: Key wordsRhizobium meliloti ; Lipopolysaccharide ; 3-Deoxyheptulosaric acid ; 2-Keto-3-deoxyoctonic acid ; Core oligosaccharide
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Lipopolysaccharides from the Rhizobium meliloti wild-type strain 102F51, which is effective in symbiosis with alfalfa, and from the nonnodulating mutant WL113, defective in root hair adhesion, derived thereof, were isolated and comparatively analyzed. Both preparations were composed of galactose, glucose, glucuronic acid, galacturonic acid, glucosamine, 3-deoxyheptulosaric acid, and 2-keto-3-deoxyoctonic acid as the major sugar constitutents. After a modified methylation analysis (consisting of the following consecutive steps: methylation, carboxyl reduction, remethylation, mild acid hydrolysis, reduction, and trideuterio-methylation), all of the 3-deoxyheptulosaric and some of the 2-keto-3-deoxyoctonic acid residues were converted into their corresponding 3-deoxyalditol derivatives, which carried trideuteriomethyl groups at positions C-2, C-4, and C-6. Another part of the permethylated 3-deoxyoctitol was also found as 2,5,6- and 2,6,8-tri-O-trideuteriomethyl derivatives. NMR data obtained with the separated oligosaccharides and the results of methylation analysis indicated that the majority of 2-keto-3-deoxyoctonate was present in the fraction of permethylated disaccharide alditols, namely as 6-O-CD3-aGlc(1→5)3-deoxyoctitol, 6-O-CD3-βGlcNMeAcyl(1→4)3-deoxyoctitol, and as the permethylated trisaccharide alditol, αGalA(1→3)-[6-O-CD3]-β-Glc(1→5)-[4-O-CD3]-3-deoxyoctitol. The presence of trideuteriomethyl groups at C-4 of both 3-deoxyalditols and at C-6 of the glucosaminyl or glucosyl residues indicated the linkage points of the released acid-labile ketosidic substituents, such as 3-deoxyheptulosarate and 2-keto-3-deoxyoctonate, in these oligosaccharides. The main differences between the preparations from the wild-type 102F51 and its mutant strain WL 113 were found in the higher content (in strain 102F51) of the following oligosaccharides: α-glucuronosyl(1→4)2-keto-3-deoxyoctonate and α-galacturonosyl-(1→3)α-glucosyl-(1→5)2-keto-3-deoxyoctonate and in the decreased content of β-glucosaminyl(1→4)2-keto-3-deoxy-octonate.
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  • 10
    ISSN: 1432-072X
    Keywords: Fast growing rhizobia ; Lipid A ; 3-Hydroxy-octadecenoic acid ; 27-Hydroxyoctacosanoic acid ; Rhizobium meliloti
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The structure of the lipopolysaccharide from Rhizobium meliloti 10406, a derivative of the wild-type strain MVII-1, was examined. The compositional analysis of its polysaccharide moiety demonstrated lack of heptose(s), but high contents in glucose, galacturonic acid and 2-keto-3-deoxy-octonate (dOclA) as characteristic features. The lipid A moiety consisted of a β-1,6 linked glucosamine disaccharide carrying ester (at C-4′) and glycosidically (at C-1) linked phosphate residues, both present exclusively as monoester phosphates but not as phosphodiesters. Ester- and amidelinked 3-hydroxy fatty acids were mostly present as non-3-O-acylated residues. Laser desorption mass spectrometry (LD-MS) revealed heterogeneity in the fatty acid substitution, as was also indicated by the non-stoichiometric ratios obtained by quantitative fatty acid analysis. The predominating lipid A structure contained at the reducing glucosamine residue ester-linked 3-hydroxy-tetradecanoic acid (3-OH-14:0) and amide-linked 3-OH-18:0, or 3-OH-18:1, respectively. The distal (non-reducing) glucosamine carried ester-bound the recently discovered 27-hydroxyoctacosanoic acid and 3-OH-14:0 and, as amide-linked fatty acid, mostly 3-hydroxy-stearic acid (3-OH-18:0). The isolated lipopolysaccharide exhibited a high extent of lethal toxicity in galactosamine-treated mice, comparable to that of enterobacterial lipopolysaccharide. The structural relationship of LPS and lipid A of Rhizobium meliloti to other rhizobial lipopolysaccharides and lipid A's with respect to questions of taxonomy and of phylogenetic relationships will be discussed.
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