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  • 1
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Biochemistry 29 (1990), S. 10745-10757 
    ISSN: 1520-4995
    Source: ACS Legacy Archives
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Copenhagen : International Union of Crystallography (IUCr)
    Acta crystallographica 55 (1999), S. 1462-1464 
    ISSN: 1399-0047
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: The oxidized form of purple acid phosphatase from pig allantoic fluid has been crystallized in the presence of phosphate using the hanging-drop technique. The crystals belong to the space group P212121 and have unit-cell parameters a = 66.8, b = 70.3, c = 78.7 Å. Diffraction data collected from a cryocooled crystal using a conventional X-ray source extend to 1.55 Å resolution. A knowledge of the three-dimensional structure of mammalian purple acid phosphatase will aid in understanding the substrate specificity of the enzyme and will be important in the rational design of inhibitors, with potential in the treatment of bone diseases.
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  • 3
    ISSN: 1399-0047
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: Disulfide-bond (Dsb) proteins are a family of redox proteins containing a Cys-X-X-Cys motif. They are essential for disulfide-bond exchange in the bacterial periplasm and are necessary for the correct folding and function of many secreted proteins. CcmG (DsbE) is a reducing Dsb protein required for cytochrome c maturation. Crystals of Bradyrhizobium japonicum CcmG have been obtained that diffract X-rays to 1.14 Å resolution. The crystals are orthorhombic, space group P212121, with unit-cell parameters a = 35.1, b = 48.2, c = 90.2 Å. Selenomethionine CcmG was expressed without using a methionine auxotroph or methionine-pathway inhibition and was purified without reducing agents.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Science Ltd
    Global change biology 11 (2005), S. 0 
    ISSN: 1365-2486
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Geography
    Notes: Mixedwood forests are an ecologically and economically important forest type in central Canada, but the ecology of these forests is not as well studied as that of single-species dominated stands in the boreal forest. Northern boreal mixedwood forests have only recently been harvested and the effects of harvesting on carbon content in these stands are unknown. We quantified the carbon content and aboveground net primary production (NPP) for four different-aged mixedwood boreal forest stands in northern Manitoba, Canada. The stands included 11-, 18-, and 30-year-old stands that originated from harvesting and a 65-year-old fire-originated stand that typifies the origin of all northern boreal mixed-wood forests that are coming under management. Trees included black spruce (Picea mariana (Mill.) B.S.P.), jack pine (Pinus banksiana Lamb.), balsam poplar (Populus balsamifera L.), and quaking aspen (Populus tremuloides Michx.). Overstory biomass was estimated using species-specific allometric models that generally explained greater than 95% of the observed variation in biomass. Carbon content of the overstory vegetation was greatest in the 65-year-old stand and was 74% larger than the 11-year-old stand and showed a positive relationship with stand age (F1, 2=122.62, P=0.0081 R2=0.99). The slope of mineral soil carbon did not differ significantly among stands (F1, 2=0.39, P=0.5956, R2=0.16). Coarse woody debris carbon content followed a U-shaped pattern among stands. Aboveground NPP differed by 24% between the youngest and oldest stand. Mean annual carbon accumulation and aboveground NPP rates of the mixedwood forests were on average two times greater than nearby relatively pure stands studied during the BOREAS (BOReal Ecosystem Atmospheric Study) project. The trends in the results, along with other field studies, suggest that harvesting does not significantly affect the total soil carbon content. The results of this study suggest that scientists should be cautious about extrapolating results from BOREAS stands to a broader region until more data on other forest types and regions are available.
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  • 5
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature 365 (1993), S. 464-468 
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] The structure of the 189 residue protein DsbA (Fig. 1) was determined at 2 A resolution by a combination of multiple isomorphous replacement (MIR) and multi-wavelength anomalous diffraction (MAD) (Table 1). A notable feature is the presence of a compactly folded helical domain that is inserted ...
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  • 6
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    NOAA/National Marine Fisheries Service/Southeast Fisheries Science Center | Miami, FL
    In:  http://aquaticcommons.org/id/eprint/2110 | 403 | 2011-09-29 19:39:26 | 2110 | United States National Marine Fisheries Service
    Publication Date: 2021-07-12
    Description: For2R is a collection of Fortran routines for saving complex data structures into a file that can be read in the R statistics environment with a single command.1 For2R provides both the means to transfer data structures significantly more complex than simple tables, and anarchive mechanism to store data for future reference.We developed this software because we write and run computationally intensive numerical models in Fortran, C++, and AD Model Builder. We then analyse results with R. We desired to automate data transfer to speed diagnostics during working-group meetings.We thus developed the For2R interface to write an R data object (of type list) to a plain-text file. The master list can contain any number of matrices, values, dataframes, vectors or lists,all of which can be read into R with a single call to the dget function. This allows easy transfer of structured data from compiled models to R.Having the capacity to transfer model data, metadata, and results has sharply reduced the time spent on diagnostics, and at the same time, our diagnostic capabilities have improved tremendously. The simplicity of this interface and the capabilities of R have enabled us to automate graph and table creation for formal reports. Finally, the persistent storage in files makes it easier to treat model results in analyses or meta-analyses devised months—or evenyears—later.We offer For2R to others in the hope that they will find it useful. (PDF contains 31 pages)
    Description: Software Version 1.03
    Keywords: Management ; Education
    Repository Name: AquaDocs
    Type: monograph
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  • 7
    facet.materialart.
    Unknown
    NOAA/National Marine Fisheries Service/Southeast Fisheries Science Center | Miami, FL
    In:  http://aquaticcommons.org/id/eprint/2109 | 403 | 2020-08-23 23:57:12 | 2109 | United States National Marine Fisheries Service
    Publication Date: 2021-07-12
    Description: C2R is a collection of C routines for saving complex data structures into a file that can be read in the R statistics environment with a single command.1 C2R provides both the means to transfer data structures significantly more complex than simple tables, and an archive mechanismto store data for future reference.We developed this software because we write and run computationally intensive numerical models in Fortran, C++, and AD Model Builder. We then analyse results with R. We desired to automate data transfer to speed diagnostics during working-group meetings.We thus developed the C2R interface to write an R data object (of type list) to a plain-text file. The master list can contain any number of matrices, values, dataframes, vectors or lists, all of which can be read into R with a single call to the dget function. This allows easy transferof structured data from compiled models to R. Having the capacity to transfer model data, metadata, and results has sharply reduced the time spent on diagnostics, and at the same time, our diagnostic capabilities have improved tremendously. The simplicity of this interface and the capabilities of R have enabled us to automate graph and table creation for formal reports. Finally, the persistent storage in files makes it easier to treat model results in analyses or meta-analyses devised months—or even years—later.We offer C2R to others in the hope that they will find it useful. (PDF contains 27 pages)
    Description: Software Version 1.00
    Keywords: Management ; Education
    Repository Name: AquaDocs
    Type: monograph
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  • 8
    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2013. This is the author's version of the work. It is posted here by permission of Elsevier for personal use, not for redistribution. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 103 (2014): 174-184, doi:10.1016/j.dsr2.2013.05.011.
    Description: In early July 2009, an unusually high concentration of the toxic dinoflagellate Alexandrium fundyense occurred in the western Gulf of Maine, causing surface waters to appear reddish brown to the human eye. The discolored water appeared to be the southern terminus of a large-scale event that caused shellfish toxicity along the entire coast of Maine to the Canadian border. Rapid-response shipboard sampling efforts together with satellite data suggest the water discoloration in the western Gulf of Maine was a highly ephemeral feature of less than two weeks in duration. Flow cytometric analysis of surface samples from the red water indicated the population was undergoing sexual reproduction. Cyst fluxes downstream of the discolored water were the highest ever measured in the Gulf of Maine, and a large deposit of new cysts was observed that fall. Although the mechanisms causing this event remain unknown, its timing coincided with an anomalous period of downwelling-favorable winds that could have played a role in aggregating upward-swimming cells. Regardless of the underlying causes, this event highlights the importance of short-term episodic phenomena on regional population dynamics of A. fundyense.
    Description: The R/V Tioga sampling effort was facilitated by event response funding from the National Oceanic Atmospheric Administration (NOAA), National Ocean Service, Center for Sponsored Coastal Ocean Research, through NOAA Cooperative Agreement NA17RJ1223. Additional support for follow-up analysis and synthesis was provided by NOAA grant NA06NOS4780245 for the Gulf of Maine Toxicity (GOMTOX) program and the Woods Hole Center for Oceans and Human Health through National Science Foundation grants OCE- 0430724 and OCE-0911031 and National Institute of Environmental Health Sciences grant 1P50-ES01274201.
    Keywords: Phytoplankton ; Population dynamics ; Red tides ; Cysts ; Paralytic shellfish poisoning ; USA ; Gulf of Maine
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 9
    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2013. This is the author's version of the work. It is posted here by permission of Elsevier for personal use, not for redistribution. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 103 (2014): 6-26, doi:10.1016/j.dsr2.2013.10.002.
    Description: Here we document Alexandrium fundyense cyst abundance and distribution patterns over nine years (1997 and 2004-2011) in the coastal waters of the Gulf of Maine (GOM) and identify linkages between those patterns and several metrics of the severity or magnitude of blooms occurring before and after each autumn cyst survey. We also explore the relative utility of two measures of cyst abundance and demonstrate that GOM cyst counts can be normalized to sediment volume, revealing meaningful patterns equivalent to those determined with dry weight normalization.Cyst concentrations were highly variable spatially. Two distinct 1 seedbeds (defined here as accumulation zones with 〉 300 cysts cm-3) are evident, one in the Bay of Fundy (BOF) and one in mid-coast Maine. Overall, seedbed locations remained relatively constant through time, but their area varied 3-4 fold, and total cyst abundance more than 10 fold among years. A major expansion of the mid-coast Maine seedbed occurred in 2009 following an unusually intense A. fundyense bloom with visible red-water conditions, but that feature disappeared by late 2010. The regional system thus has only two seedbeds with the bathymetry, sediment characteristics, currents, biology, and environmental conditions necessary to persist for decades or longer. Strong positive correlations were confirmed between the abundance of cysts in both the 0-1 and the 0-3 cm layers of sediments in autumn and geographic measures of the extent of the bloom that occurred the next year (i.e., cysts → blooms), such as the length of coastline closed due to shellfish toxicity or the southernmost latitude of shellfish closures. In general, these metrics of bloom geographic extent did not correlate with the number of cysts in sediments following the blooms (blooms → cysts). There are, however, significant positive correlations between 0-3 cm cyst abundances and metrics of the preceding bloom that are indicative of bloom intensity or vegetative cell abundance (e.g., cumulative shellfish toxicity, duration of detectable toxicity in shellfish, and bloom termination date). These data suggest that it may be possible to use cyst abundance to empirically forecast the geographic extent of the forthcoming bloom and, conversely, to use other metrics from bloom and toxicity events to forecast the size of the subsequent cyst population as the inoculum for the next year’s bloom. This is an important step towards understanding the excystment/encystment cycle in A. fundyense bloom dynamics while also augmenting our predictive capability for this HAB-forming species in the GOM.
    Description: Research support provided by the ECOHAB Grant program through NOAA Grants NA06NOS4780245 and NA09NOS4780193, and through the Woods Hole Center for Oceans and Human Health, National 1 Science Foundation (NSF) Grants OCE-0430724, OCE-0911031, and OCE-1314642; and National Institute of Environmental Health Sciences (NIEHS) Grants 1-P50-ES012742-01 and 1-P01-ES021923-01, and funding through the states of ME, NH, and MA. We are also grateful for event response funding provided for many of the cruises. Funding for J.L. Martin was provided by Fisheries and Oceans Canada.
    Keywords: Alexandrium fundyense ; Cysts ; Resuspension ; Gulf of Maine ; Harmful algal bloom ; HAB ; Red tide ; Paralytic shellfish poisoning
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2013. This is the author's version of the work. It is posted here by permission of Elsevier for personal use, not for redistribution. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 103 (2014): 264-276, doi:10.1016/j.dsr2.2013.09.018.
    Description: A major goal in harmful algal bloom (HAB) research has been to identify mechanisms underlying interannual variability in bloom magnitude and impact. Here the focus is on variability in Alexandrium fundyense blooms and paralytic shellfish poisoning (PSP) toxicity in Maine, USA, over 34 years (1978 – 2011). The Maine coastline was divided into two regions - eastern and western Maine, and within those two regions, three measures of PSP toxicity (the percent of stations showing detectable toxicity over the year, the cumulative amount of toxicity per station measured in all shellfish (mussel) samples during that year, and the duration of measurable toxicity) were examined for each year in the time series. These metrics were combined into a simple HAB Index that provides a single measure of annual toxin severity across each region. The three toxin metrics, as well as the HAB Index that integrates them, reveal significant variability in overall toxicity between individual years as well as long-term, decadal patterns or regimes. Based on different conceptual models of the system, we considered three trend formulations to characterize the long-term patterns in the Index – a three-phase (mean-shift) model, a linear two-phase model, and a pulse-decline model. The first represents a “regime shift” or multiple equilibria formulation as might occur with alternating periods of sustained high and low cyst abundance or favorable and unfavorable growth conditions, the second depicts a scenario of more gradual transitions in cyst abundance or growth conditions of vegetative cells, and the third characterizes a ”sawtooth” pattern in which upward shifts in toxicity are associated with major cyst recruitment events, followed by a gradual but continuous decline until the next pulse. The fitted models were compared using both residual sum of squares and Akaike’s Information Criterion. There were some differences between model fits, but none consistently gave a better fit than the others. This statistical underpinning can guide efforts to identify physical and/or biological mechanisms underlying the patterns revealed by the HAB Index. Although A. fundyense cyst survey data (limited to 9 years) do not span the entire interval of the shellfish toxicity records, this analysis leads us to hypothesize that major changes in the abundance of A. fundyense cysts may be a primary factor contributing to the decadal trends in shellfish toxicity in this region. The HAB Index approach taken here is simple but represents a novel and potentially useful tool for resource managers in many areas of the world subject to toxic HABs.
    Description: Research support provided through the Woods Hole Center for Oceans and Human Health, National Science Foundation (NSF) Grants OCE- 1128041 and OCE-1314642; and National Institute of Environmental Health Sciences (NIEHS) Grant 1-P50-ES021923-01, the ECOHAB Grant program through NOAA Grants NA06NOS4780245 and NA09NOS4780193, the MERHAB Grant program through NOAA Grant NA11NOS4780025, the PCMHAB Grant program through NOAA Grant NA11NOS4780023, and funding through the states of ME, NH, and MA. Funding for J.L. Martin was provided by Fisheries and Oceans Canada.
    Keywords: Alexandrium fundyense ; Harmful algal blooms ; HABs ; PSP ; HAB Index
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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